Psyllid ID: psy17467

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730
Protein Sequence
MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNIDIKSVSGISQIRSDIVKSLSLYYYTFVDLLHFKDCVYLSGHFDAQIASRRKKDKNNKKILNEIIKPGAESYRKTREEAQIASRRKKDKNNKKILNEIIKPGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESRFSRALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLRRVSETQVKSLNLLNFLRVYTVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLRRVSAGNICFSLNQRAFVSLTAEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNELSLKAFNAAHEMVHNQSDVNFPRLGQMIMDYEVPMKKLSEEFIPHDSMRPMRWFIIKVMSTSHV
Secondary Structure (PSIPRED)
cccccEEEEEEEEccccccHHHHHHHcccccccccccccccEEEEEEEEEEccEEEEEEEEccccHHHHHHHHHHHHHcccEEEEEEEcccccHHccHHHHHHHHHHHcccccEEEEEcccccccccccccHHHHHccccccccccEEccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEccccccccccHHHcHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccEEccHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHccccccccccHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEEccccccHHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEcHHHHHHccccHHHHHHHHHHccccEEEccHHHcccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHcccEEcccccccEEEEcccccccccccccccccHHHccHHHHHHHHHHccccccEccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccHHHHHHHHHHccccccccHHHHcccccEHHHHHHHHHHHHHcccccccccEccccccccccHccccHHHHccHHHHHHHHHHHHHHHHcccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHccccHHHHccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccEcHHHHHHHHHHEHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccEEEcccccEEEEccccccccccHHHHccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHEEcccccHHHHHHHccccccccccHEEEEEEcccccc
Coil and Loop (DISEMBL)
MEDYKFLFKVVLVGNAGVGKTCLVRrftqgvfppgqgatigvDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYdiscqptfDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALasdktdldeDEHVLACLLMVFVAVCIPKLARNEACFYLASLeghsnnihcmarnkidredreiptevgedfaKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKAcgdakskpsflsdksLESCIKQIVKKfpnidiksvsgiSQIRSDIVKSLSLYYYTFVDLLHFKDCVYLSGHFDAQIASRRKKDKNNKKILNEIIKPGAESYRKTREEAQIASRRKKDKNNKKILNEIIKPGAESYRKTREELTTMDKLHMALTELCFAInyctniqvwdftfapREYLHQHLESRFSRALVGMVmfnpdtseiakpSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLRRVSETQVKSLNLLNFLRVYTVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLRRVSAGNICFSLNQRAFVSLtaegaipfnaeefsdvNELRALADLIGPYGMKLLNELSLKAFNAAHEMVhnqsdvnfprlgQMIMDYEVpmkklseefiphdsmrpMRWFIIKVMSTSHV
Flexible Loop (DISEMBL)
MEDYKFLFKVVLVGNAGVGKTCLVRRFTQgvfppgqgatigVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLAsleghsnniHCMArnkidredreiPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAkskpsflsdkslESCIKQIVKkfpnidiksvsgisqIRSDIVKSLSLYYYTFVDLLHFKDCVYLSGHFDAQiasrrkkdknnkkilneiikpgaesyrktrEEAQiasrrkkdknnkkilneiikpgaesyrKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESRFSRALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLRRVSETQVKSLNLLNFLRVYTVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLRRVSAGNICFSLNQRAFVSLTAEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNELSLKAFNAAHEMVHNQSDVNFPRLGQMIMDYEVPMKKLSEefiphdsmrpMRWFIIKVMSTSHV
Low Complexity Region (SEG)
MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNIDIKSVSGISQIRSDIVKSLSLYYYTFVDLLHFKDCVYLSGHFDAQIASRRkkdknnkkilneiikPGAESYRKTREEAQIASRRkkdknnkkilneiikPGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESRFSRALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLRRVSETQVKSLNLLNFLRVYTVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLRRVSAGNICFSLNQRAFVSLTAEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNELSLKAFNAAHEMVHNQSDVNFPRLGQMIMDYEVPMKKLSEEFIPHDSMRPMRWFIIKVMSTSHV
Disordered region (IsUnstruct)
***YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKI**********VGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDA*****FLSDKSLESCIKQIVKKFPNIDIKSVSGISQIRSDIVKSLSLYYYTFVDLLHFKDCVYLSGHFDAQI*****************************************************************LTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESRFSRALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLRRVSETQVKSLNLLNFLRVYTVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLRRVSAGNICFSLNQRAFVSLTAEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNELSLKAFNAAHEMVHNQSDVNFPRLGQMIMDYEVPMKKLSEEFIPHDSMRPMRWFIIKVM*****
Disordered Region (DISOPRED)
*EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVF****************************CMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL******************************************SLESCIKQIVKKFPNIDIKSVSGISQIRSDIVKSLSLYYYTFVDLLHFKDCVYLSGHFDAQIASRRKKDKNNKKILNEIIKPGAE*****************************************ELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESRFSRALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQ****HGEKTVAALYIQWYSEVLLRRVSETQVKSLNLLNFLRVYTVENYVHIDMTRVFNNALLQQTQ***SHGEKTVAALYIQWYSEVLLRRVSAGNICFSLNQRAFVSLTAEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNELSLKAFNAAHEMVHNQSDVNFPRLGQMIMDYEVPMKKLSEEFIPHDSMRPMRWFIIKVMST***
Disordered Region (DISEMBL)
MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNIDIKSVSGISQIRSDIVKSLSLYYYTFVDLLHFKDCVYLSGHFDAQIASRRKKDKNNKKILNEIIKPGAES*****************KNNKKILNEIIKPGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESRFSRALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLRRVSETQVKSLNLLNFLRVYTVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLRRVSAGNICFSLNQRAFVSLTAEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNELSLKAFNAAHEMVHNQSDVNFPRLGQMIMDYEVPMKKLSEEFIPHDSMRPMRWFIIKVMSTSHV
Disordered Region (DISPRO)
*EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVC*******************************************EDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNIDIKSVSGISQIRSDIVKSLSLYYYTFVDLLHFKDCVYLSGHFDAQIASRRKKDKNNKKILNEIIKPGAESYRKTREEAQIASR****************PGAE**RKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESRFSRALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLRRVSETQVKSLNLLNFLRVYTVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLRRVSAGNICFSLNQRAFVSLTAEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNELSLKAFNAAHEMVHNQSDVNFPRLGQMIMDYEVPMKKLSEEFIPHDSMRPMRWFIIKVMS****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNIDIKSVSGISQIRSDIVKSLSLYYYTFVDLLHFKDCVYLSGHFDAQIASRRKKDKNNKKILNEIIKPGAESxxxxxxxxxxxxxxxxxxxxxKILNEIIKPGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESRFSRALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLRRVSETQVKSLNLLNFLRVYTVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLRRVSAGNICFSLNQRAFVSLTAEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNELSLKAFNAAHEMVHNQSDVNFPRLGQMIMDYEVPMKKLSEEFIPHDSMRPMRWFIIKVMSTSHV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	730	2.2.26 [Sep-21-2011]
P55162	1126	Membrane-associated prote	yes	N/A	0.208	0.134	0.802	2e-67
Q923S9	203	Ras-related protein Rab-3	yes	N/A	0.147	0.532	0.831	1e-56
Q15771	203	Ras-related protein Rab-3	yes	N/A	0.147	0.532	0.831	1e-56
Q17QB7	203	Ras-related protein Rab-3	yes	N/A	0.147	0.532	0.831	1e-56
B0S6R1	1128	Nck-associated protein 1	no	N/A	0.194	0.125	0.646	3e-53
P28660	1128	Nck-associated protein 1	no	N/A	0.194	0.125	0.646	3e-53
Q9Y2A7	1128	Nck-associated protein 1	no	N/A	0.194	0.125	0.646	5e-53
Q640K3	1128	Nck-associated protein 1	N/A	N/A	0.194	0.125	0.646	7e-53
P55161	1128	Nck-associated protein 1	yes	N/A	0.194	0.125	0.639	1e-52
A7RU46	1120	Nck-associated protein 1	N/A	N/A	0.216	0.141	0.487	2e-40

>sp|P55162|HEM_DROME Membrane-associated protein Hem OS=Drosophila melanogaster GN=Hem PE=2 SV=1

 Score =  258 bits (658), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 122/152 (80%), Positives = 133/152 (87%)

Query: 401 LNEIIKPGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLE 460
            ++I KPG ESYRKTRE+LTTMDKLHMALTELCFAINYC  + VW+F FAPREYL Q+LE
Sbjct: 654 FDDIRKPGDESYRKTREDLTTMDKLHMALTELCFAINYCPTVNVWEFAFAPREYLCQNLE 713

Query: 461 SRFSRALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQT 520
            RFSR LVGMVMFN +T EIAKPSELLASVRAYMNVLQTVENYVHID+TRVFNN LLQQT
Sbjct: 714 HRFSRDLVGMVMFNQETMEIAKPSELLASVRAYMNVLQTVENYVHIDITRVFNNCLLQQT 773

Query: 521 QRMDSHGEKTVAALYIQWYSEVLLRRVSETQV 552
           Q +DSHGEKT+AALY  WYSEVLLRRVS   +
Sbjct: 774 QALDSHGEKTIAALYNTWYSEVLLRRVSAGNI 805

Plays a role during growth of the oocyte.
Drosophila melanogaster (taxid: 7227)

>sp|Q923S9|RAB30_MOUSE Ras-related protein Rab-30 OS=Mus musculus GN=Rab30 PE=2 SV=1

 Score =  222 bits (565), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 99/119 (83%), Positives = 111/119 (93%)

Query: 1   MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
           MEDY FLFK+VL+GNAGVGKTCLVRRFTQG+FPPGQGATIGVDFMIKTVEIN E++KLQI
Sbjct: 3   MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQI 62

Query: 61  WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           WDTAGQERFRSITQSYYRSA+ALIL YDI+C+ +F CL +WLREIE+YAS KV+ VLVG
Sbjct: 63  WDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVG 121

Mus musculus (taxid: 10090)

>sp|Q15771|RAB30_HUMAN Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2

 Score =  222 bits (565), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 99/119 (83%), Positives = 111/119 (93%)

Query: 1   MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
           MEDY FLFK+VL+GNAGVGKTCLVRRFTQG+FPPGQGATIGVDFMIKTVEIN E++KLQI
Sbjct: 3   MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQI 62

Query: 61  WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           WDTAGQERFRSITQSYYRSA+ALIL YDI+C+ +F CL +WLREIE+YAS KV+ VLVG
Sbjct: 63  WDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVG 121

Homo sapiens (taxid: 9606)

>sp|Q17QB7|RAB30_BOVIN Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 PE=2 SV=1

 Score =  222 bits (565), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 99/119 (83%), Positives = 111/119 (93%)

Query: 1   MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
           MEDY FLFK+VL+GNAGVGKTCLVRRFTQG+FPPGQGATIGVDFMIKTVEIN E++KLQI
Sbjct: 3   MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQI 62

Query: 61  WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           WDTAGQERFRSITQSYYRSA+ALIL YDI+C+ +F CL +WLREIE+YAS KV+ VLVG
Sbjct: 63  WDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVG 121

Bos taurus (taxid: 9913)

>sp|B0S6R1|NCKP1_DANRE Nck-associated protein 1 OS=Danio rerio GN=nckap1 PE=3 SV=1

 Score =  210 bits (535), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 95/147 (64%), Positives = 114/147 (77%)

Query: 406 KPGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESRFSR 465
           KPG ES RK R  +T +DKLH AL+ELCF+INY  N+ VW+ TF PREYL  HLE RF++
Sbjct: 659 KPGVESMRKNRLLVTNLDKLHTALSELCFSINYVPNMMVWEHTFTPREYLTSHLEIRFTK 718

Query: 466 ALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQRMDS 525
           ++VGM M+N  T EIAKPSELL SVRAYM VLQ++ENYV ID+TRVFNN LLQQTQ +DS
Sbjct: 719 SIVGMTMYNQTTQEIAKPSELLTSVRAYMTVLQSIENYVQIDITRVFNNVLLQQTQHLDS 778

Query: 526 HGEKTVAALYIQWYSEVLLRRVSETQV 552
           HGE T+ +LY  WY E LLR+VS   +
Sbjct: 779 HGEPTITSLYTNWYLETLLRQVSNGHI 805

Part of the WAVE complex that regulates lamellipodia formation. The WAVE complex regulates actin filament reorganization via its interaction with the Arp2/3 complex. Actin remodeling activity is regulated by RAC1.

Danio rerio (taxid: 7955)

>sp|P28660|NCKP1_MOUSE Nck-associated protein 1 OS=Mus musculus GN=Nckap1 PE=1 SV=2

 Score =  210 bits (535), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 95/147 (64%), Positives = 114/147 (77%)

Query: 406 KPGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESRFSR 465
           KPG ES RK R  +T +DKLH AL+ELCF+INY  N+ VW+ TF PREYL  HLE RF++
Sbjct: 659 KPGVESMRKNRLVVTNLDKLHTALSELCFSINYVPNMAVWEHTFTPREYLTSHLEIRFTK 718

Query: 466 ALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQRMDS 525
           ++VGM M+N  T EIAKPSELL SVRAYM VLQ++ENYV ID+TRVFNN LLQQTQ +DS
Sbjct: 719 SIVGMTMYNQATQEIAKPSELLTSVRAYMTVLQSIENYVQIDITRVFNNVLLQQTQHLDS 778

Query: 526 HGEKTVAALYIQWYSEVLLRRVSETQV 552
           HGE T+ +LY  WY E LLR+VS   +
Sbjct: 779 HGEPTITSLYTNWYLETLLRQVSNGHI 805

Part of the WAVE complex that regulates lamellipodia formation. The WAVE complex regulates actin filament reorganization via its interaction with the Arp2/3 complex. Actin remodeling activity is regulated by RAC1.

Mus musculus (taxid: 10090)

>sp|Q9Y2A7|NCKP1_HUMAN Nck-associated protein 1 OS=Homo sapiens GN=NCKAP1 PE=1 SV=1

 Score =  209 bits (533), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 95/147 (64%), Positives = 114/147 (77%)

Query: 406 KPGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESRFSR 465
           KPG ES RK R  +T +DKLH AL+ELCF+INY  N+ VW+ TF PREYL  HLE RF++
Sbjct: 659 KPGVESMRKNRLVVTNLDKLHTALSELCFSINYVPNMVVWEHTFTPREYLTSHLEIRFTK 718

Query: 466 ALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQRMDS 525
           ++VGM M+N  T EIAKPSELL SVRAYM VLQ++ENYV ID+TRVFNN LLQQTQ +DS
Sbjct: 719 SIVGMTMYNQATQEIAKPSELLTSVRAYMTVLQSIENYVQIDITRVFNNVLLQQTQHLDS 778

Query: 526 HGEKTVAALYIQWYSEVLLRRVSETQV 552
           HGE T+ +LY  WY E LLR+VS   +
Sbjct: 779 HGEPTITSLYTNWYLETLLRQVSNGHI 805

Part of the WAVE complex that regulates lamellipodia formation. The WAVE complex regulates actin filament reorganization via its interaction with the Arp2/3 complex. Actin remodeling activity is regulated by RAC1.

Homo sapiens (taxid: 9606)

>sp|Q640K3|NCKP1_XENLA Nck-associated protein 1 OS=Xenopus laevis GN=nckap1 PE=2 SV=1

 Score =  209 bits (532), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 95/147 (64%), Positives = 114/147 (77%)

Query: 406 KPGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESRFSR 465
           KPG ES RK R  +T +DKLH AL+ELCF+INY  N+ VW+ TF PREYL  HLE RF++
Sbjct: 659 KPGVESMRKNRLVVTNLDKLHTALSELCFSINYAPNMVVWEHTFTPREYLTSHLEIRFTK 718

Query: 466 ALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQRMDS 525
           ++VGM M+N  T EIAKPSELL SVRAYM VLQ++ENYV ID+TRVFNN LLQQTQ +DS
Sbjct: 719 SIVGMTMYNQVTQEIAKPSELLTSVRAYMTVLQSIENYVQIDITRVFNNVLLQQTQHLDS 778

Query: 526 HGEKTVAALYIQWYSEVLLRRVSETQV 552
           HGE T+ +LY  WY E LLR+VS   +
Sbjct: 779 HGEPTITSLYTNWYLETLLRQVSNGHI 805

Part of the WAVE complex that regulates lamellipodia formation. The WAVE complex regulates actin filament reorganization via its interaction with the Arp2/3 complex. Actin remodeling activity is regulated by RAC1.

Xenopus laevis (taxid: 8355)

>sp|P55161|NCKP1_RAT Nck-associated protein 1 OS=Rattus norvegicus GN=Nckap1 PE=2 SV=1

 Score =  208 bits (529), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 94/147 (63%), Positives = 113/147 (76%)

Query: 406 KPGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESRFSR 465
           KPG ES RK R  +T +DKLH AL+ELCF+INY  N+ VW+ TF PREYL  HLE RF++
Sbjct: 659 KPGVESMRKNRLVVTNLDKLHTALSELCFSINYVPNMAVWEHTFTPREYLTSHLEIRFTK 718

Query: 466 ALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQRMDS 525
           ++VGM M+N  T EIAKPSELL SVR YM VLQ++ENYV ID+TRVFNN LLQQTQ +DS
Sbjct: 719 SIVGMTMYNQATQEIAKPSELLTSVREYMTVLQSIENYVQIDITRVFNNVLLQQTQHLDS 778

Query: 526 HGEKTVAALYIQWYSEVLLRRVSETQV 552
           HGE T+ +LY  WY E LLR+VS   +
Sbjct: 779 HGEPTITSLYTNWYLETLLRQVSNGHI 805

Part of the WAVE complex that regulates lamellipodia formation. The WAVE complex regulates actin filament reorganization via its interaction with the Arp2/3 complex. Actin remodeling activity is regulated by RAC1.

Rattus norvegicus (taxid: 10116)

>sp|A7RU46|NAPA_NEMVE Nck-associated protein 1 homolog OS=Nematostella vectensis GN=napA PE=3 SV=1

 Score =  167 bits (424), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/160 (48%), Positives = 108/160 (67%)

Query: 388 ASRRKKDKNNKKILNEIIKPGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDF 447
           + RR KDKN K +  E   PG ES+RK+RE LT++D   ++LTELC AI +   I VW+ 
Sbjct: 641 SERRTKDKNKKNVHVEFKPPGIESFRKSRETLTSLDTKLLSLTELCHAITHTEAIPVWEH 700

Query: 448 TFAPREYLHQHLESRFSRALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHID 507
            FAP+EYL   LE  F++A+V M  ++ D   IA+PSE+L++V+A M+ L+++ENY  +D
Sbjct: 701 IFAPKEYLSSQLEEFFAKAVVSMAQYDIDNQRIARPSEVLSNVKAMMSSLRSLENYTGVD 760

Query: 508 MTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLRRV 547
             RVFN+ LLQQTQ  DS G  T+  +Y  WY +V LRRV
Sbjct: 761 TARVFNHVLLQQTQPQDSQGANTITQMYTTWYLDVFLRRV 800

Involved in regulation of actin and microtubule organization. Involved in cell adhesion.

Nematostella vectensis (taxid: 45351)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	730
357616343	1074	putative membrane-associated protein gex	0.173	0.118	0.883	3e-72
322786599	1121	hypothetical protein SINV_07486 [Solenop	0.202	0.132	0.833	5e-71
307175866	1122	Membrane-associated protein Hem [Campono	0.202	0.131	0.833	6e-71
332017367	1122	Membrane-associated protein Hem [Acromyr	0.202	0.131	0.833	6e-71
383862515	1122	PREDICTED: membrane-associated protein H	0.202	0.131	0.833	1e-70
307191997	1122	Membrane-associated protein Hem [Harpegn	0.202	0.131	0.826	2e-70
340725220	1122	PREDICTED: membrane-associated protein H	0.202	0.131	0.833	4e-70
350403919	1122	PREDICTED: membrane-associated protein H	0.202	0.131	0.833	4e-70
380016202	1439	PREDICTED: membrane-associated protein H	0.202	0.102	0.833	6e-70
156548662	1123	PREDICTED: membrane-associated protein H	0.206	0.134	0.828	9e-70

>gi|357616343|gb|EHJ70140.1| putative membrane-associated protein gex-3 [Danaus plexippus]

 Score =  280 bits (715), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 129/146 (88%), Positives = 138/146 (94%)

Query: 403 EIIKPGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESR 462
           EIIKPGAESYRKTREELTTMDKLHMALTELCFAINYC+ + VW++TFAPREYLHQHLE+R
Sbjct: 605 EIIKPGAESYRKTREELTTMDKLHMALTELCFAINYCSTVNVWEYTFAPREYLHQHLENR 664

Query: 463 FSRALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQR 522
           FS+ALVGMVMFN DTSEIAKPSELL SVRAYMNVLQTVENYVHID+TRVFNN LLQQTQ 
Sbjct: 665 FSKALVGMVMFNQDTSEIAKPSELLVSVRAYMNVLQTVENYVHIDITRVFNNCLLQQTQS 724

Query: 523 MDSHGEKTVAALYIQWYSEVLLRRVS 548
            DSHGEKT+AALY QWYSE+LLRRVS
Sbjct: 725 CDSHGEKTIAALYTQWYSEILLRRVS 750

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322786599|gb|EFZ12994.1| hypothetical protein SINV_07486 [Solenopsis invicta]

 Score =  275 bits (704), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 125/150 (83%), Positives = 138/150 (92%)

Query: 403 EIIKPGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESR 462
           EI KPG ESYRKTREELTTMDKLHMALTELC+AINYC  I VW++TFAPREYLHQHLESR
Sbjct: 655 EIHKPGIESYRKTREELTTMDKLHMALTELCYAINYCPTINVWEYTFAPREYLHQHLESR 714

Query: 463 FSRALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQR 522
           F+RALVGMVM+NPDTSEIAKPSEL  SVR+YMNVLQT+ENYVHID+TRVFNNALLQQTQ 
Sbjct: 715 FARALVGMVMYNPDTSEIAKPSELFVSVRSYMNVLQTIENYVHIDITRVFNNALLQQTQE 774

Query: 523 MDSHGEKTVAALYIQWYSEVLLRRVSETQV 552
           +DSHG+KT+AALY QWYS+VLLRRVS   +
Sbjct: 775 LDSHGDKTIAALYTQWYSDVLLRRVSAGNI 804

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307175866|gb|EFN65681.1| Membrane-associated protein Hem [Camponotus floridanus]

 Score =  275 bits (703), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 125/150 (83%), Positives = 138/150 (92%)

Query: 403 EIIKPGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESR 462
           EI KPG ESYRKTREELTTMDKLHMALTELC+AINYC  I VW++TFAPREYLHQHLESR
Sbjct: 655 EIHKPGIESYRKTREELTTMDKLHMALTELCYAINYCPTINVWEYTFAPREYLHQHLESR 714

Query: 463 FSRALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQR 522
           F+RALVGMVM+NPDTSEIAKPSEL  SVR+YMNVLQT+ENYVHID+TRVFNNALLQQTQ 
Sbjct: 715 FARALVGMVMYNPDTSEIAKPSELFVSVRSYMNVLQTIENYVHIDITRVFNNALLQQTQE 774

Query: 523 MDSHGEKTVAALYIQWYSEVLLRRVSETQV 552
           +DSHG+KT+AALY QWYS+VLLRRVS   +
Sbjct: 775 LDSHGDKTIAALYTQWYSDVLLRRVSAGNI 804

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017367|gb|EGI58109.1| Membrane-associated protein Hem [Acromyrmex echinatior]

 Score =  275 bits (703), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 125/150 (83%), Positives = 138/150 (92%)

Query: 403 EIIKPGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESR 462
           EI KPG ESYRKTREELTTMDKLHMALTELC+AINYC  I VW++TFAPREYLHQHLESR
Sbjct: 655 EIHKPGIESYRKTREELTTMDKLHMALTELCYAINYCPTINVWEYTFAPREYLHQHLESR 714

Query: 463 FSRALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQR 522
           F+RALVGMVM+NPDTSEIAKPSEL  SVR+YMNVLQT+ENYVHID+TRVFNNALLQQTQ 
Sbjct: 715 FARALVGMVMYNPDTSEIAKPSELFVSVRSYMNVLQTIENYVHIDITRVFNNALLQQTQE 774

Query: 523 MDSHGEKTVAALYIQWYSEVLLRRVSETQV 552
           +DSHG+KT+AALY QWYS+VLLRRVS   +
Sbjct: 775 LDSHGDKTIAALYTQWYSDVLLRRVSAGNI 804

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862515|ref|XP_003706729.1| PREDICTED: membrane-associated protein Hem-like [Megachile rotundata]

 Score =  274 bits (701), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 125/150 (83%), Positives = 138/150 (92%)

Query: 403 EIIKPGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESR 462
           EI KPG ESYRKTREELTTMDKLHMALTELC+AINYC  I VW++TFAPREYLHQHLESR
Sbjct: 655 EIHKPGIESYRKTREELTTMDKLHMALTELCYAINYCPTINVWEYTFAPREYLHQHLESR 714

Query: 463 FSRALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQR 522
           F+RALVGMVM+NPDTSEIAKPSEL  SVR+YMNVLQTVENYVHID+TRVFNNALLQQTQ 
Sbjct: 715 FARALVGMVMYNPDTSEIAKPSELFVSVRSYMNVLQTVENYVHIDITRVFNNALLQQTQE 774

Query: 523 MDSHGEKTVAALYIQWYSEVLLRRVSETQV 552
           +D+HG+KT+AALY QWYS+VLLRRVS   +
Sbjct: 775 LDNHGDKTIAALYTQWYSDVLLRRVSAGNI 804

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307191997|gb|EFN75387.1| Membrane-associated protein Hem [Harpegnathos saltator]

 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 124/150 (82%), Positives = 138/150 (92%)

Query: 403 EIIKPGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESR 462
           EI KPG ES+RKTREELTTMDKLHMALTELC+AINYC  I VW++TFAPREYLHQHLESR
Sbjct: 655 EIHKPGIESFRKTREELTTMDKLHMALTELCYAINYCPTINVWEYTFAPREYLHQHLESR 714

Query: 463 FSRALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQR 522
           F+RALVGMVM+NPDTSEIAKPSEL  SVR+YMNVLQT+ENYVHID+TRVFNNALLQQTQ 
Sbjct: 715 FARALVGMVMYNPDTSEIAKPSELFVSVRSYMNVLQTIENYVHIDITRVFNNALLQQTQE 774

Query: 523 MDSHGEKTVAALYIQWYSEVLLRRVSETQV 552
           +DSHG+KT+AALY QWYS+VLLRRVS   +
Sbjct: 775 LDSHGDKTIAALYTQWYSDVLLRRVSAGNI 804

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725220|ref|XP_003400971.1| PREDICTED: membrane-associated protein Hem-like [Bombus terrestris]

 Score =  272 bits (696), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 125/150 (83%), Positives = 137/150 (91%)

Query: 403 EIIKPGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESR 462
           EI KPG ESYRKTREELTTMDKLHMALTELC+AINYC  I VW++TFAPREYLHQHLESR
Sbjct: 655 EIHKPGIESYRKTREELTTMDKLHMALTELCYAINYCPTINVWEYTFAPREYLHQHLESR 714

Query: 463 FSRALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQR 522
           F+RALVGMVM+N DTSEIAKPSEL  SVR+YMNVLQTVENYVHID+TRVFNNALLQQTQ 
Sbjct: 715 FARALVGMVMYNSDTSEIAKPSELFVSVRSYMNVLQTVENYVHIDITRVFNNALLQQTQE 774

Query: 523 MDSHGEKTVAALYIQWYSEVLLRRVSETQV 552
           +DSHG+KT+AALY QWYS+VLLRRVS   +
Sbjct: 775 LDSHGDKTIAALYTQWYSDVLLRRVSAGNI 804

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403919|ref|XP_003486951.1| PREDICTED: membrane-associated protein Hem-like [Bombus impatiens]

 Score =  272 bits (696), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 125/150 (83%), Positives = 137/150 (91%)

Query: 403 EIIKPGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESR 462
           EI KPG ESYRKTREELTTMDKLHMALTELC+AINYC  I VW++TFAPREYLHQHLESR
Sbjct: 655 EIHKPGIESYRKTREELTTMDKLHMALTELCYAINYCPTINVWEYTFAPREYLHQHLESR 714

Query: 463 FSRALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQR 522
           F+RALVGMVM+N DTSEIAKPSEL  SVR+YMNVLQTVENYVHID+TRVFNNALLQQTQ 
Sbjct: 715 FARALVGMVMYNSDTSEIAKPSELFVSVRSYMNVLQTVENYVHIDITRVFNNALLQQTQE 774

Query: 523 MDSHGEKTVAALYIQWYSEVLLRRVSETQV 552
           +DSHG+KT+AALY QWYS+VLLRRVS   +
Sbjct: 775 LDSHGDKTIAALYTQWYSDVLLRRVSAGNI 804

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016202|ref|XP_003692077.1| PREDICTED: membrane-associated protein Hem-like [Apis florea]

 Score =  272 bits (695), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 125/150 (83%), Positives = 137/150 (91%)

Query: 403  EIIKPGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESR 462
            EI KPG ESYRKTREELTTMDKLHMALTELC+AINYC  I VW++TFAPREYLHQHLESR
Sbjct: 1005 EIHKPGIESYRKTREELTTMDKLHMALTELCYAINYCPTINVWEYTFAPREYLHQHLESR 1064

Query: 463  FSRALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQR 522
            F+RALVGMVM+N DTSEIAKPSEL  SVR+YMNVLQTVENYVHID+TRVFNNALLQQTQ 
Sbjct: 1065 FARALVGMVMYNSDTSEIAKPSELFVSVRSYMNVLQTVENYVHIDITRVFNNALLQQTQE 1124

Query: 523  MDSHGEKTVAALYIQWYSEVLLRRVSETQV 552
            +DSHG+KT+AALY QWYS+VLLRRVS   +
Sbjct: 1125 LDSHGDKTIAALYTQWYSDVLLRRVSAGNI 1154

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156548662|ref|XP_001602104.1| PREDICTED: membrane-associated protein Hem-like [Nasonia vitripennis]

 Score =  271 bits (693), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 126/152 (82%), Positives = 137/152 (90%)

Query: 401 LNEIIKPGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLE 460
           L EI KPG ESYRKTREELTTMDKLHMALTELC+AINYC  I VW++TFAPREYLHQHLE
Sbjct: 653 LMEIRKPGVESYRKTREELTTMDKLHMALTELCYAINYCPTINVWEYTFAPREYLHQHLE 712

Query: 461 SRFSRALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQT 520
           +RF+RALVGMVMF+ DT+ IAKPSEL  SVRAYMNVLQTVENYVHID+TRVFNNALLQQT
Sbjct: 713 TRFARALVGMVMFDADTNVIAKPSELFVSVRAYMNVLQTVENYVHIDITRVFNNALLQQT 772

Query: 521 QRMDSHGEKTVAALYIQWYSEVLLRRVSETQV 552
           Q +DSHGEKT+AALY QWYSEVLLRRVS   +
Sbjct: 773 QALDSHGEKTIAALYTQWYSEVLLRRVSAGNI 804

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	730
FB|FBgn0011771	1126	Hem "HEM-protein" [Drosophila	0.384	0.249	0.494	4.5e-99
ZFIN|ZDB-GENE-030131-4426	1128	nckap1 "NCK-associated protein	0.275	0.178	0.514	1.7e-74
MGI|MGI:1355333	1128	Nckap1 "NCK-associated protein	0.275	0.178	0.514	3.3e-74
UNIPROTKB|F1RYL3	1125	NCKAP1 "Uncharacterized protei	0.275	0.178	0.514	5.6e-74
UNIPROTKB|Q9Y2A7	1128	NCKAP1 "Nck-associated protein	0.275	0.178	0.514	5.7e-74
RGD|61939	1128	Nckap1 "NCK-associated protein	0.275	0.178	0.509	2.8e-73
UNIPROTKB|E1C6G9	1128	NCKAP1 "Uncharacterized protei	0.2	0.129	0.643	9.5e-73
UNIPROTKB|F1MPZ9	1093	NCKAP1 "Uncharacterized protei	0.275	0.183	0.514	8e-62
FB|FBgn0031882	223	Rab30 "Rab30" [Drosophila mela	0.163	0.533	0.899	4.2e-56
UNIPROTKB|E1B876	1134	NCKAP1L "Uncharacterized prote	0.194	0.125	0.507	1e-55

FB|FBgn0011771 Hem "HEM-protein" [Drosophila melanogaster (taxid:7227)]

 Score = 641 (230.7 bits), Expect = 4.5e-99, Sum P(3) = 4.5e-99
 Identities = 146/295 (49%), Positives = 186/295 (63%)

Query:   407 PGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESRFSRA 466
             PG ESYRKTRE+LTTMDKLHMALTELCFAINYC  + VW+F FAPREYL Q+LE RFSR 
Sbjct:   660 PGDESYRKTREDLTTMDKLHMALTELCFAINYCPTVNVWEFAFAPREYLCQNLEHRFSRD 719

Query:   467 LVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQRMDSH 526
             LVGMVMFN +T EIAKPSELLASVRAYMNVLQTVENYVHID+TRVFNN LLQQTQ +DSH
Sbjct:   720 LVGMVMFNQETMEIAKPSELLASVRAYMNVLQTVENYVHIDITRVFNNCLLQQTQALDSH 779

Query:   527 GEKTVAALYIQWYSEVLLRRVSETQVK-SLNLLNFLRVYTVENYVHIDMTRVFN-NALLQ 584
             GEKT+AALY  WYSEVLLRRVS   +  S+N   F+ + + E +V  +     + N L  
Sbjct:   780 GEKTIAALYNTWYSEVLLRRVSAGNIVFSINQKAFVPI-SPEGWVPFNPQEFSDLNELRA 838

Query:   585 QTQRMDSHGEKTVAALYIQWYSEVLLRRVSAGNICFSLNQRAFVSLTAEGAIP-FNAEEF 643
               + +  +G KT+    + W+   +  +V       S N+   ++L      P    E+F
Sbjct:   839 LAELVGPYGIKTLNET-LMWH---IANQVQELKSLVSTNKEVLITLRTSFDKPEVMKEQF 894

Query:   644 SDVNELRALADLIGPYGMKLLNELSLKAFNAAHEMVHNQSDVNFPRLGQMIMDYE 698
               + ++  +   +   G+ +         N  HE + +  D   P L   + D++
Sbjct:   895 KRLQDVDRVLQRMTIIGVIICFR------NLVHEALVDVLDKRIPFLLSSVKDFQ 943

GO:0007417 "central nervous system development" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA;NAS

GO:0001555 "oocyte growth" evidence=NAS

GO:0007409 "axonogenesis" evidence=IMP

GO:0007010 "cytoskeleton organization" evidence=IMP

GO:0005737 "cytoplasm" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0030031 "cell projection assembly" evidence=IMP

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0030866 "cortical actin cytoskeleton organization" evidence=IMP

GO:0007528 "neuromuscular junction development" evidence=IMP

GO:0008407 "chaeta morphogenesis" evidence=IMP

GO:0007520 "myoblast fusion" evidence=IMP

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0001764 "neuron migration" evidence=IMP

GO:0031209 "SCAR complex" evidence=IPI

ZFIN|ZDB-GENE-030131-4426 nckap1 "NCK-associated protein 1" [Danio rerio (taxid:7955)]

 Score = 508 (183.9 bits), Expect = 1.7e-74, Sum P(2) = 1.7e-74
 Identities = 108/210 (51%), Positives = 139/210 (66%)

Query:   407 PGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESRFSRA 466
             PG ES RK R  +T +DKLH AL+ELCF+INY  N+ VW+ TF PREYL  HLE RF+++
Sbjct:   660 PGVESMRKNRLLVTNLDKLHTALSELCFSINYVPNMMVWEHTFTPREYLTSHLEIRFTKS 719

Query:   467 LVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQRMDSH 526
             +VGM M+N  T EIAKPSELL SVRAYM VLQ++ENYV ID+TRVFNN LLQQTQ +DSH
Sbjct:   720 IVGMTMYNQTTQEIAKPSELLTSVRAYMTVLQSIENYVQIDITRVFNNVLLQQTQHLDSH 779

Query:   527 GEKTVAALYIQWYSEVLLRRVSETQVKSLNLLN-FLRVYTVENYVHIDMTRVFNNALLQQ 585
             GE T+ +LY  WY E LLR+VS   +     +  F+ + T EN    ++T  FN      
Sbjct:   780 GEPTITSLYTNWYLETLLRQVSNGHIAYFPAMKAFVNLPT-EN----ELT--FNAEEYSD 832

Query:   586 TQRMDSHGEKTVAALYIQWYSEVLLRRVSA 615
                M S  E  +    +++ SE L+  +S+
Sbjct:   833 ISEMRSLSE-LLGPYGMKFLSESLMWHISS 861

GO:0005886 "plasma membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031258 "lamellipodium membrane" evidence=IEA

MGI|MGI:1355333 Nckap1 "NCK-associated protein 1" [Mus musculus (taxid:10090)]

 Score = 507 (183.5 bits), Expect = 3.3e-74, Sum P(2) = 3.3e-74
 Identities = 108/210 (51%), Positives = 139/210 (66%)

Query:   407 PGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESRFSRA 466
             PG ES RK R  +T +DKLH AL+ELCF+INY  N+ VW+ TF PREYL  HLE RF+++
Sbjct:   660 PGVESMRKNRLVVTNLDKLHTALSELCFSINYVPNMAVWEHTFTPREYLTSHLEIRFTKS 719

Query:   467 LVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQRMDSH 526
             +VGM M+N  T EIAKPSELL SVRAYM VLQ++ENYV ID+TRVFNN LLQQTQ +DSH
Sbjct:   720 IVGMTMYNQATQEIAKPSELLTSVRAYMTVLQSIENYVQIDITRVFNNVLLQQTQHLDSH 779

Query:   527 GEKTVAALYIQWYSEVLLRRVSETQVKSLNLLN-FLRVYTVENYVHIDMTRVFNNALLQQ 585
             GE T+ +LY  WY E LLR+VS   +     +  F+ + T EN    ++T  FN      
Sbjct:   780 GEPTITSLYTNWYLETLLRQVSNGHIAYFPAMKAFVNLPT-EN----ELT--FNAEEYSD 832

Query:   586 TQRMDSHGEKTVAALYIQWYSEVLLRRVSA 615
                M S  E  +    +++ SE L+  +S+
Sbjct:   833 ISEMRSLSE-LLGPYGMKFLSESLMWHISS 861

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0001756 "somitogenesis" evidence=IMP

GO:0001843 "neural tube closure" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007354 "zygotic determination of anterior/posterior axis, embryo" evidence=IMP

GO:0007492 "endoderm development" evidence=IMP

GO:0008078 "mesodermal cell migration" evidence=IMP

GO:0010172 "embryonic body morphogenesis" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030027 "lamellipodium" evidence=IDA

GO:0030032 "lamellipodium assembly" evidence=IMP;IDA

GO:0030903 "notochord development" evidence=IMP

GO:0030950 "establishment or maintenance of actin cytoskeleton polarity" evidence=IMP

GO:0032880 "regulation of protein localization" evidence=IMP

GO:0035050 "embryonic heart tube development" evidence=IMP

GO:0042074 "cell migration involved in gastrulation" evidence=IMP

GO:0042995 "cell projection" evidence=IEA

GO:0045175 "basal protein localization" evidence=IDA

GO:0045176 "apical protein localization" evidence=IDA

GO:0048339 "paraxial mesoderm development" evidence=IMP

GO:0048340 "paraxial mesoderm morphogenesis" evidence=IMP

GO:0048570 "notochord morphogenesis" evidence=IMP

GO:0048617 "embryonic foregut morphogenesis" evidence=IMP

GO:0050821 "protein stabilization" evidence=IMP

UNIPROTKB|F1RYL3 NCKAP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 506 (183.2 bits), Expect = 5.6e-74, Sum P(2) = 5.6e-74
 Identities = 108/210 (51%), Positives = 139/210 (66%)

Query:   407 PGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESRFSRA 466
             PG ES RK R  +T +DKLH AL+ELCF+INY  N+ VW+ TF PREYL  HLE RF+++
Sbjct:   660 PGVESMRKNRLVVTNLDKLHTALSELCFSINYVPNMVVWEHTFTPREYLTSHLEIRFTKS 719

Query:   467 LVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQRMDSH 526
             +VGM M+N  T EIAKPSELL SVRAYM VLQ++ENYV ID+TRVFNN LLQQTQ +DSH
Sbjct:   720 IVGMTMYNQATQEIAKPSELLTSVRAYMTVLQSIENYVQIDITRVFNNVLLQQTQHLDSH 779

Query:   527 GEKTVAALYIQWYSEVLLRRVSETQVKSLNLLN-FLRVYTVENYVHIDMTRVFNNALLQQ 585
             GE T+ +LY  WY E LLR+VS   +     +  F+ + T EN    ++T  FN      
Sbjct:   780 GEPTITSLYTNWYLETLLRQVSNGHIAYFPAMKAFVNLPT-EN----ELT--FNAEEYSD 832

Query:   586 TQRMDSHGEKTVAALYIQWYSEVLLRRVSA 615
                M S  E  +    +++ SE L+  +S+
Sbjct:   833 ISEMRSLSE-LLGPYGMKFLSESLMWHISS 861

GO:0050821 "protein stabilization" evidence=IEA

GO:0048617 "embryonic foregut morphogenesis" evidence=IEA

GO:0048570 "notochord morphogenesis" evidence=IEA

GO:0048340 "paraxial mesoderm morphogenesis" evidence=IEA

GO:0045176 "apical protein localization" evidence=IEA

GO:0045175 "basal protein localization" evidence=IEA

GO:0035050 "embryonic heart tube development" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

GO:0030950 "establishment or maintenance of actin cytoskeleton polarity" evidence=IEA

GO:0030032 "lamellipodium assembly" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0010172 "embryonic body morphogenesis" evidence=IEA

GO:0008078 "mesodermal cell migration" evidence=IEA

GO:0007492 "endoderm development" evidence=IEA

GO:0007354 "zygotic determination of anterior/posterior axis, embryo" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0001756 "somitogenesis" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

UNIPROTKB|Q9Y2A7 NCKAP1 "Nck-associated protein 1" [Homo sapiens (taxid:9606)]

 Score = 506 (183.2 bits), Expect = 5.7e-74, Sum P(2) = 5.7e-74
 Identities = 108/210 (51%), Positives = 139/210 (66%)

Query:   407 PGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESRFSRA 466
             PG ES RK R  +T +DKLH AL+ELCF+INY  N+ VW+ TF PREYL  HLE RF+++
Sbjct:   660 PGVESMRKNRLVVTNLDKLHTALSELCFSINYVPNMVVWEHTFTPREYLTSHLEIRFTKS 719

Query:   467 LVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQRMDSH 526
             +VGM M+N  T EIAKPSELL SVRAYM VLQ++ENYV ID+TRVFNN LLQQTQ +DSH
Sbjct:   720 IVGMTMYNQATQEIAKPSELLTSVRAYMTVLQSIENYVQIDITRVFNNVLLQQTQHLDSH 779

Query:   527 GEKTVAALYIQWYSEVLLRRVSETQVKSLNLLN-FLRVYTVENYVHIDMTRVFNNALLQQ 585
             GE T+ +LY  WY E LLR+VS   +     +  F+ + T EN    ++T  FN      
Sbjct:   780 GEPTITSLYTNWYLETLLRQVSNGHIAYFPAMKAFVNLPT-EN----ELT--FNAEEYSD 832

Query:   586 TQRMDSHGEKTVAALYIQWYSEVLLRRVSA 615
                M S  E  +    +++ SE L+  +S+
Sbjct:   833 ISEMRSLSE-LLGPYGMKFLSESLMWHISS 861

GO:0016021 "integral to membrane" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001756 "somitogenesis" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0007354 "zygotic determination of anterior/posterior axis, embryo" evidence=IEA

GO:0007492 "endoderm development" evidence=IEA

GO:0008078 "mesodermal cell migration" evidence=IEA

GO:0010172 "embryonic body morphogenesis" evidence=IEA

GO:0030032 "lamellipodium assembly" evidence=IEA

GO:0030950 "establishment or maintenance of actin cytoskeleton polarity" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

GO:0035050 "embryonic heart tube development" evidence=IEA

GO:0045175 "basal protein localization" evidence=IEA

GO:0045176 "apical protein localization" evidence=IEA

GO:0048340 "paraxial mesoderm morphogenesis" evidence=IEA

GO:0048570 "notochord morphogenesis" evidence=IEA

GO:0048617 "embryonic foregut morphogenesis" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0031258 "lamellipodium membrane" evidence=IEA

GO:0006915 "apoptotic process" evidence=TAS

GO:0007417 "central nervous system development" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

RGD|61939 Nckap1 "NCK-associated protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 502 (181.8 bits), Expect = 2.8e-73, Sum P(2) = 2.8e-73
 Identities = 107/210 (50%), Positives = 138/210 (65%)

Query:   407 PGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESRFSRA 466
             PG ES RK R  +T +DKLH AL+ELCF+INY  N+ VW+ TF PREYL  HLE RF+++
Sbjct:   660 PGVESMRKNRLVVTNLDKLHTALSELCFSINYVPNMAVWEHTFTPREYLTSHLEIRFTKS 719

Query:   467 LVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQRMDSH 526
             +VGM M+N  T EIAKPSELL SVR YM VLQ++ENYV ID+TRVFNN LLQQTQ +DSH
Sbjct:   720 IVGMTMYNQATQEIAKPSELLTSVREYMTVLQSIENYVQIDITRVFNNVLLQQTQHLDSH 779

Query:   527 GEKTVAALYIQWYSEVLLRRVSETQVKSLNLLN-FLRVYTVENYVHIDMTRVFNNALLQQ 585
             GE T+ +LY  WY E LLR+VS   +     +  F+ + T EN    ++T  FN      
Sbjct:   780 GEPTITSLYTNWYLETLLRQVSNGHIAYFPAMKAFVNLPT-EN----ELT--FNAEEYSD 832

Query:   586 TQRMDSHGEKTVAALYIQWYSEVLLRRVSA 615
                M S  E  +    +++ SE L+  +S+
Sbjct:   833 ISEMRSLSE-LLGPYGMKFLSESLMWHISS 861

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0001756 "somitogenesis" evidence=ISO

GO:0001843 "neural tube closure" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0007354 "zygotic determination of anterior/posterior axis, embryo" evidence=ISO

GO:0007492 "endoderm development" evidence=ISO

GO:0008078 "mesodermal cell migration" evidence=ISO

GO:0010172 "embryonic body morphogenesis" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030027 "lamellipodium" evidence=ISO

GO:0030032 "lamellipodium assembly" evidence=ISO

GO:0030903 "notochord development" evidence=ISO

GO:0030950 "establishment or maintenance of actin cytoskeleton polarity" evidence=ISO

GO:0031258 "lamellipodium membrane" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=ISO

GO:0035050 "embryonic heart tube development" evidence=ISO

GO:0042074 "cell migration involved in gastrulation" evidence=ISO

GO:0045175 "basal protein localization" evidence=ISO

GO:0045176 "apical protein localization" evidence=ISO

GO:0048339 "paraxial mesoderm development" evidence=ISO

GO:0048340 "paraxial mesoderm morphogenesis" evidence=ISO

GO:0048570 "notochord morphogenesis" evidence=ISO

GO:0048617 "embryonic foregut morphogenesis" evidence=ISO

GO:0050821 "protein stabilization" evidence=ISO

UNIPROTKB|E1C6G9 NCKAP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 505 (182.8 bits), Expect = 9.5e-73, Sum P(2) = 9.5e-73
 Identities = 94/146 (64%), Positives = 113/146 (77%)

Query:   407 PGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESRFSRA 466
             PG ES RK R  +T +DKLH AL+ELCF+INY  N+ VW+ TF PREYL  HLE RF+++
Sbjct:   660 PGVESMRKNRLVVTNLDKLHTALSELCFSINYVPNMVVWEHTFTPREYLTSHLEIRFTKS 719

Query:   467 LVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQRMDSH 526
             +VGM M+N  T EIAKPSELL SVRAYM VLQ++ENYV ID+TRVFNN LLQQTQ +DSH
Sbjct:   720 IVGMTMYNQATQEIAKPSELLTSVRAYMTVLQSIENYVQIDITRVFNNVLLQQTQHLDSH 779

Query:   527 GEKTVAALYIQWYSEVLLRRVSETQV 552
             GE T+ +LY  WY E LLR+VS   +
Sbjct:   780 GEPTITSLYTNWYLETLLRQVSNGHI 805

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001756 "somitogenesis" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0007354 "zygotic determination of anterior/posterior axis, embryo" evidence=IEA

GO:0007492 "endoderm development" evidence=IEA

GO:0008078 "mesodermal cell migration" evidence=IEA

GO:0010172 "embryonic body morphogenesis" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0030032 "lamellipodium assembly" evidence=IEA

GO:0030950 "establishment or maintenance of actin cytoskeleton polarity" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

GO:0035050 "embryonic heart tube development" evidence=IEA

GO:0045175 "basal protein localization" evidence=IEA

GO:0045176 "apical protein localization" evidence=IEA

GO:0048340 "paraxial mesoderm morphogenesis" evidence=IEA

GO:0048570 "notochord morphogenesis" evidence=IEA

GO:0048617 "embryonic foregut morphogenesis" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

UNIPROTKB|F1MPZ9 NCKAP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 506 (183.2 bits), Expect = 8.0e-62, Sum P(2) = 8.0e-62
 Identities = 108/210 (51%), Positives = 139/210 (66%)

Query:   407 PGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESRFSRA 466
             PG ES RK R  +T +DKLH AL+ELCF+INY  N+ VW+ TF PREYL  HLE RF+++
Sbjct:   625 PGVESMRKNRLVVTNLDKLHTALSELCFSINYVPNMVVWEHTFTPREYLTSHLEIRFTKS 684

Query:   467 LVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQRMDSH 526
             +VGM M+N  T EIAKPSELL SVRAYM VLQ++ENYV ID+TRVFNN LLQQTQ +DSH
Sbjct:   685 IVGMTMYNQATQEIAKPSELLTSVRAYMTVLQSIENYVQIDITRVFNNVLLQQTQHLDSH 744

Query:   527 GEKTVAALYIQWYSEVLLRRVSETQVKSLNLLN-FLRVYTVENYVHIDMTRVFNNALLQQ 585
             GE T+ +LY  WY E LLR+VS   +     +  F+ + T EN    ++T  FN      
Sbjct:   745 GEPTITSLYTNWYLETLLRQVSNGHIAYFPAMKAFVNLPT-EN----ELT--FNAEEYSD 797

Query:   586 TQRMDSHGEKTVAALYIQWYSEVLLRRVSA 615
                M S  E  +    +++ SE L+  +S+
Sbjct:   798 ISEMRSLSE-LLGPYGMKFLSESLMWHISS 826

GO:0050821 "protein stabilization" evidence=IEA

GO:0048617 "embryonic foregut morphogenesis" evidence=IEA

GO:0048570 "notochord morphogenesis" evidence=IEA

GO:0048340 "paraxial mesoderm morphogenesis" evidence=IEA

GO:0045176 "apical protein localization" evidence=IEA

GO:0045175 "basal protein localization" evidence=IEA

GO:0035050 "embryonic heart tube development" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

GO:0030950 "establishment or maintenance of actin cytoskeleton polarity" evidence=IEA

GO:0030032 "lamellipodium assembly" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0010172 "embryonic body morphogenesis" evidence=IEA

GO:0008078 "mesodermal cell migration" evidence=IEA

GO:0007492 "endoderm development" evidence=IEA

GO:0007354 "zygotic determination of anterior/posterior axis, embryo" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0001756 "somitogenesis" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

FB|FBgn0031882 Rab30 "Rab30" [Drosophila melanogaster (taxid:7227)]

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 107/119 (89%), Positives = 115/119 (96%)

Query:     1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
             MEDYKFLFK+VLVGNAGVGKTCLVRRFTQG+FPPGQGATIGVDFMIKTVE+  E+IKLQI
Sbjct:     1 MEDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVEGEKIKLQI 60

Query:    61 WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
             WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCL DWLREI+EYA+ KVL++LVG
Sbjct:    61 WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLPDWLREIQEYANSKVLKILVG 119

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0031982 "vesicle" evidence=ISS

UNIPROTKB|E1B876 NCKAP1L "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 385 (140.6 bits), Expect = 1.0e-55, Sum P(3) = 1.0e-55
 Identities = 72/142 (50%), Positives = 101/142 (71%)

Query:   407 PGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESRFSRA 466
             PGAES+RK R  +T MDKLH+ LTEL   +N+  +  V++ T  P EYL  HLE+RF+RA
Sbjct:   661 PGAESHRKNRSVVTNMDKLHLNLTELALTMNHVQSFSVFEHTIFPSEYLSSHLEARFNRA 720

Query:   467 LVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQRMDSH 526
             +V +  +N  T EIA+PSELLA V+AY++ +Q++  ++  D++R+  NALLQQTQ +DS 
Sbjct:   721 IVWLAGYNATTQEIARPSELLAGVKAYISFIQSLAQFLGADVSRIIRNALLQQTQPLDSS 780

Query:   527 GEKTVAALYIQWYSEVLLRRVS 548
             GE+T+  LY  WY E LLR+ S
Sbjct:   781 GEQTITTLYTNWYLESLLRQAS 802

GO:0090023 "positive regulation of neutrophil chemotaxis" evidence=IEA

GO:0070358 "actin polymerization-dependent cell motility" evidence=IEA

GO:0060100 "positive regulation of phagocytosis, engulfment" evidence=IEA

GO:0050853 "B cell receptor signaling pathway" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0045648 "positive regulation of erythrocyte differentiation" evidence=IEA

GO:0045588 "positive regulation of gamma-delta T cell differentiation" evidence=IEA

GO:0045579 "positive regulation of B cell differentiation" evidence=IEA

GO:0043378 "positive regulation of CD8-positive, alpha-beta T cell differentiation" evidence=IEA

GO:0043372 "positive regulation of CD4-positive, alpha-beta T cell differentiation" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043029 "T cell homeostasis" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0042102 "positive regulation of T cell proliferation" evidence=IEA

GO:0035509 "negative regulation of myosin-light-chain-phosphatase activity" evidence=IEA

GO:0033630 "positive regulation of cell adhesion mediated by integrin" evidence=IEA

GO:0032715 "negative regulation of interleukin-6 production" evidence=IEA

GO:0032700 "negative regulation of interleukin-17 production" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0031209 "SCAR complex" evidence=IEA

GO:0030890 "positive regulation of B cell proliferation" evidence=IEA

GO:0030866 "cortical actin cytoskeleton organization" evidence=IEA

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA

GO:0030675 "Rac GTPase activator activity" evidence=IEA

GO:0030593 "neutrophil chemotaxis" evidence=IEA

GO:0030295 "protein kinase activator activity" evidence=IEA

GO:0030011 "maintenance of cell polarity" evidence=IEA

GO:0006461 "protein complex assembly" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0002262 "myeloid cell homeostasis" evidence=IEA

GO:0001782 "B cell homeostasis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q15771	RAB30_HUMAN	No assigned EC number	0.8319	0.1479	0.5320	yes	N/A
Q923S9	RAB30_MOUSE	No assigned EC number	0.8319	0.1479	0.5320	yes	N/A
P20791	RAB8B_DICDI	No assigned EC number	0.5344	0.1547	0.5566	yes	N/A
O24466	RAE1A_ARATH	No assigned EC number	0.5213	0.1547	0.5231	yes	N/A
P01123	YPT1_YEAST	No assigned EC number	0.5365	0.1671	0.5922	yes	N/A
Q4UB16	RAB1_THEAN	No assigned EC number	0.5083	0.1630	0.5409	yes	N/A
Q17QB7	RAB30_BOVIN	No assigned EC number	0.8319	0.1479	0.5320	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	730
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	1e-80
pfam09735	1118	pfam09735, Nckap1, Membrane-associated apoptosis p	5e-68
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	1e-56
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	5e-54
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	1e-52
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	4e-49
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	3e-48
pfam00071	162	pfam00071, Ras, Ras family	4e-47
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	1e-45
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	3e-45
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	4e-44
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	2e-42
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	3e-40
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	4e-39
pfam09735	1118	pfam09735, Nckap1, Membrane-associated apoptosis p	1e-38
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	1e-38
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	2e-38
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	1e-37
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	2e-37
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	1e-35
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	2e-35
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	3e-35
pfam09735	1118	pfam09735, Nckap1, Membrane-associated apoptosis p	2e-34
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	2e-34
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	5e-34
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	2e-32
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	2e-31
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	2e-30
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	2e-30
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	4e-29
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-28
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	2e-28
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	2e-25
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	4e-25
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	4e-25
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	9e-25
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	3e-24
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	5e-23
pfam09735	1118	pfam09735, Nckap1, Membrane-associated apoptosis p	7e-23
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	5e-21
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	7e-21
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	3e-20
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	5e-20
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	9e-20
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	2e-19
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	7e-18
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	1e-17
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	2e-17
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	2e-17
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	2e-17
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	5e-17
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	1e-16
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	2e-16
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	3e-16
pfam08477	116	pfam08477, Miro, Miro-like protein	7e-16
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	3e-15
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	7e-15
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	1e-14
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	2e-14
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	3e-14
pfam09735	1118	pfam09735, Nckap1, Membrane-associated apoptosis p	7e-14
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	8e-14
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	1e-13
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	3e-13
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	7e-13
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	8e-13
pfam00071	162	pfam00071, Ras, Ras family	2e-12
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-12
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	6e-12
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	6e-12
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	7e-12
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	8e-12
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	9e-12
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	9e-12
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	1e-11
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	1e-11
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	2e-11
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	2e-11
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	3e-11
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	8e-11
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	9e-11
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	2e-10
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	2e-10
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	3e-10
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	6e-10
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	7e-10
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	7e-10
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	8e-10
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	1e-09
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	2e-09
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	3e-09
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	4e-09
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	6e-09
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	7e-09
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	1e-08
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	2e-08
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	2e-08
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	2e-08
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	2e-08
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	2e-08
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	3e-08
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	3e-08
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	4e-08
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	5e-08
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	6e-08
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	6e-08
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	2e-07
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	3e-07
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	5e-07
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	2e-06
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	2e-06
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	4e-06
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	5e-06
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	6e-06
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	7e-06
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	8e-06
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	1e-05
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	1e-05
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	1e-05
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	1e-05
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	2e-05
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	2e-05
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	2e-05
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	4e-05
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	7e-05
pfam04670	230	pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve	7e-05
cd04161	167	cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A	8e-05
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	9e-05
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	1e-04
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	1e-04
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	1e-04
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	2e-04
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	2e-04
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	2e-04
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	3e-04
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	0.001
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	0.001
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	0.001
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	0.002
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	0.003

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  254 bits (649), Expect = 1e-80
 Identities = 97/119 (81%), Positives = 110/119 (92%)

Query: 1   MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
           MEDY FLFK+VL+GNAGVGKTCLVRRFTQG+FPPGQGATIGVDFMIKTVEI  E+IKLQI
Sbjct: 1   MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQI 60

Query: 61  WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           WDTAGQERFRSITQSYYRSA+ALIL YDI+C+ +F CL +WLREIE+YA+ KV+ +LVG
Sbjct: 61  WDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVG 119

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|204301 pfam09735, Nckap1, Membrane-associated apoptosis protein

 Score =  242 bits (620), Expect = 5e-68
 Identities = 94/168 (55%), Positives = 118/168 (70%)

Query: 385 AQIASRRKKDKNNKKILNEIIKPGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQV 444
           +   +++ K    KK   E  KPG ESYRK R  +T +DKLH+ LTELC A+N+   I V
Sbjct: 634 SAARNKKSKKAKAKKGEPEREKPGHESYRKNRSSVTMLDKLHLRLTELCSALNHVEPICV 693

Query: 445 WDFTFAPREYLHQHLESRFSRALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYV 504
           W+ TFAPREYL  HLE RF+RA+VGM  +N  T EIA+PSELL+ VRAYM VLQ++E YV
Sbjct: 694 WEHTFAPREYLSSHLEGRFTRAIVGMAQYNQATQEIARPSELLSLVRAYMTVLQSLEQYV 753

Query: 505 HIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLRRVSETQV 552
            +D+TRV  N LLQQTQ +DSHGE T+ ALY  WY + LLR+VS   +
Sbjct: 754 SMDITRVIRNVLLQQTQPLDSHGEGTITALYTNWYLDNLLRQVSGGGI 801

Expression of this protein was found to be markedly reduced in patients with Alzheimer's disease. It is involved in the regulation of actin polymerisation in the brain as part of a WAVE2 signalling complex. Length = 1118

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  189 bits (484), Expect = 1e-56
 Identities = 62/112 (55%), Positives = 83/112 (74%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VL+G++GVGKT L+ RF    F     +TIGVDF  KT+E++ +++KLQIWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           RFRSIT SYYR AH  ILVYD++ + +F+ L  WL E++EYA   +  +LVG
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVG 112

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  183 bits (466), Expect = 5e-54
 Identities = 64/112 (57%), Positives = 87/112 (77%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK++L+G++GVGK+ L+ RFT G F     +TIGVDF  KT+E++ +R+KLQIWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           RFRSIT SYYR A   +LVYDI+ + +F+ L +WL+E+ EYAS  V+ +LVG
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVG 112

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  179 bits (455), Expect = 1e-52
 Identities = 73/160 (45%), Positives = 108/160 (67%), Gaps = 13/160 (8%)

Query: 6   FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
           FLFK++L+G++ VGKTC+V+RF  G F   QG TIGVDF +KT+EI  +R+KLQIWDTAG
Sbjct: 2   FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAG 61

Query: 66  QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLK 125
           QERFR+ITQSYYRSA+  I+ YDI+ + +F+ +  W+ E+E+Y +  V+ +L+G    L+
Sbjct: 62  QERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLE 121

Query: 126 IVNE--------MASAAGLLCTVDPALATALASDKTDLDE 157
              E        +A   G+L      L T+ A + ++++E
Sbjct: 122 EQREVLFEEACTLAEHYGILA----VLETS-AKESSNVEE 156

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  169 bits (431), Expect = 4e-49
 Identities = 63/114 (55%), Positives = 93/114 (81%)

Query: 6   FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
           +LFK++L+G++GVGK+CL+ RF++  F P   +TIG+DF I+T+E++ ++IKLQIWDTAG
Sbjct: 2   YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAG 61

Query: 66  QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           QERFR+IT SYYR A  +ILVYDI+ + +F+ + +W+R I+E+AS  V R+LVG
Sbjct: 62  QERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVG 115

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  167 bits (424), Expect = 3e-48
 Identities = 62/120 (51%), Positives = 90/120 (75%)

Query: 6   FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
           +LFK++L+G++GVGK+CL+ RF    +     +TIGVDF I+T+E++ + +KLQIWDTAG
Sbjct: 1   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAG 60

Query: 66  QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLK 125
           QERFR+IT SYYR AH +I+VYD++ Q +F+ +  WL+EI+ YAS  V ++LVG    L 
Sbjct: 61  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  163 bits (416), Expect = 4e-47
 Identities = 59/111 (53%), Positives = 77/111 (69%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+VLVG+ GVGK+ L+ RFTQ  FP     TIGVDF  KT+E++ + +KLQIWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           FR++   YYR A   +LVYDI+ + +F+ +  WL EI  +A   V  VLVG
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVG 111

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  160 bits (406), Expect = 1e-45
 Identities = 66/242 (27%), Positives = 110/242 (45%), Gaps = 81/242 (33%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VL+G++ VGK+ +V RF +  F   Q +TIG  F+ +TV +++  +K +IWDTAGQE
Sbjct: 2   FKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE 61

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIV 127
           R+RS+   YYR A A I+VYDI+ + +F+    W++E++E+                   
Sbjct: 62  RYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHG------------------ 103

Query: 128 NEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLA 187
                         P +  ALA +K DL+                               
Sbjct: 104 -------------PPNIVIALAGNKADLESK----------------------------- 121

Query: 188 SLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA 247
                          ++  E+        +++A  + + ++ETSAK  +NV +LF +IA 
Sbjct: 122 --------------RQVSTEE-------AQEYADENGLLFMETSAKTGENVNELFTEIAR 160

Query: 248 EL 249
           +L
Sbjct: 161 KL 162

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  158 bits (403), Expect = 3e-45
 Identities = 57/120 (47%), Positives = 88/120 (73%)

Query: 6   FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
           +LFK+VL+G++GVGK+ L+ RFT+  F     +TIGV+F  +T++I+ + IK QIWDTAG
Sbjct: 2   YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAG 61

Query: 66  QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLK 125
           QER+R+IT +YYR A   +LVYDI+ + TF+ +  WL+E+ ++A   ++ +LVG  S L+
Sbjct: 62  QERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDLR 121

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  155 bits (394), Expect = 4e-44
 Identities = 56/113 (49%), Positives = 83/113 (73%), Gaps = 1/113 (0%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K++L+G++GVGK+ L+ RFT   F     +TIGVDF +KTV ++ +++KL IWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFK-VLRVLVG 119
           RFR++T SYYR A  +ILVYD++ + TFD L  WL E++ Y++    +++LVG
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVG 113

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  151 bits (383), Expect = 2e-42
 Identities = 61/127 (48%), Positives = 88/127 (69%), Gaps = 2/127 (1%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK++++G++ VGKTCL  RF  G FP    ATIGVDF  +TVEI+ ERIK+Q+WDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62

Query: 68  RFR-SITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGLK 125
           RFR S+ Q YYR+ HA++ VYD++   +F  L  W+ E E+++   +V R+LVG    L+
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122

Query: 126 IVNEMAS 132
              ++ +
Sbjct: 123 EQIQVPT 129

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  144 bits (366), Expect = 3e-40
 Identities = 57/121 (47%), Positives = 84/121 (69%)

Query: 4   YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
           Y +LFK +++G+ GVGK+CL+ +FT   F P    TIGV+F  + + I+ ++IKLQIWDT
Sbjct: 1   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 60

Query: 64  AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSG 123
           AGQE FRSIT+SYYR A   +LVYDI+ + TF+ LT WL +  ++++  +  +L+G    
Sbjct: 61  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCD 120

Query: 124 L 124
           L
Sbjct: 121 L 121

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  141 bits (358), Expect = 4e-39
 Identities = 46/112 (41%), Positives = 73/112 (65%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K+V +G+  VGKT ++ RF    F     ATIG+DF+ KT+ ++++ ++LQ+WDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           RFRS+  SY R +   ++VYDI+ + +FD    W+ ++ +     V+ VLVG
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVG 112

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|204301 pfam09735, Nckap1, Membrane-associated apoptosis protein

 Score =  154 bits (391), Expect = 1e-38
 Identities = 70/135 (51%), Positives = 87/135 (64%), Gaps = 15/135 (11%)

Query: 557 LLNFLRVY-----TVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLR 611
           LL+ +R Y     ++E YV +D+TRV  N LLQQTQ +DSHGE T+ ALY  WY + LLR
Sbjct: 735 LLSLVRAYMTVLQSLEQYVSMDITRVIRNVLLQQTQPLDSHGEGTITALYTNWYLDNLLR 794

Query: 612 RVSAGNICFSLNQRAFVSLTAEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNELSLKA 671
           +VS G I FS   +AFVS   E  + FNAEEFSD++ELRAL +L+GPYGMK L+E     
Sbjct: 795 QVSGGGIVFSPAMKAFVSSPPEE-LGFNAEEFSDISELRALVELLGPYGMKFLSESL--- 850

Query: 672 FNAAHEMVHNQSDVN 686
                 M H  S VN
Sbjct: 851 ------MWHIASQVN 859

Expression of this protein was found to be markedly reduced in patients with Alzheimer's disease. It is involved in the regulation of actin polymerisation in the brain as part of a WAVE2 signalling complex. Length = 1118

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  141 bits (357), Expect = 1e-38
 Identities = 62/116 (53%), Positives = 85/116 (73%), Gaps = 1/116 (0%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQ-GATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
           FKV+LVG++GVGKTCL+ RF  G F  G   AT+G+ F  K V ++  ++KLQIWDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
           ERFRS+T +YYR AHAL+L+YD++ + +FD +  WL EI EYA   V+ +L+G  +
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKA 116

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  139 bits (353), Expect = 2e-38
 Identities = 53/112 (47%), Positives = 78/112 (69%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK +++G+AG GK+CL+ +F +  F      TIGV+F  + V +  + +KLQIWDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           RFRS+T+SYYR A   +LVYDI+ + +F+ LT+WL +    AS  ++ +LVG
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVG 112

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  138 bits (350), Expect = 1e-37
 Identities = 63/117 (53%), Positives = 84/117 (71%), Gaps = 1/117 (0%)

Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
           DY  LFK++++G++GVGK+ L+ RF    F      TIGVDF I+TVEIN ER+KLQIWD
Sbjct: 2   DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWD 61

Query: 63  TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           TAGQERFR+IT +YYR  H +I+VYD++   +F  +  WL+EIE+     V +VLVG
Sbjct: 62  TAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD-DVCKVLVG 117

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  138 bits (350), Expect = 2e-37
 Identities = 53/119 (44%), Positives = 83/119 (69%), Gaps = 2/119 (1%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE-RIKLQIWDTAGQ 66
           F+++++G++ VGK+ L++RFT+G F      T+GVDF  + +EI    RIKLQ+WDTAGQ
Sbjct: 3   FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQ 62

Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYAS-FKVLRVLVGGTSGL 124
           ERFRSIT+SYYR++  ++LV+DI+ + +F+ + DWL E   +    + + +LVG    L
Sbjct: 63  ERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDL 121

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  132 bits (333), Expect = 1e-35
 Identities = 52/112 (46%), Positives = 84/112 (75%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           F+++L+G++GVGKTCL+ RFT   F     +TIGVDF +KT+E++  ++++QIWDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           R+++IT+ YYR A  + LVYDIS + ++  +  W+ +++EYA   V ++L+G
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIG 112

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  131 bits (331), Expect = 2e-35
 Identities = 51/119 (42%), Positives = 82/119 (68%)

Query: 6   FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
           ++FK +++G+ GVGK+CL+ +FT+  F      TIGV+F  + +E+N ++IKLQIWDTAG
Sbjct: 1   YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAG 60

Query: 66  QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
           QERFR++T+SYYR A   ++VYDI+ + T++ L+ WL +     +   +  L+G  + L
Sbjct: 61  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADL 119

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  132 bits (333), Expect = 3e-35
 Identities = 58/121 (47%), Positives = 83/121 (68%)

Query: 4   YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
           Y +LFK +++G+ GVGK+CL+ +FT   F P    TIGV+F  + + I+N+ IKLQIWDT
Sbjct: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62

Query: 64  AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSG 123
           AGQE FRSIT+SYYR A   +LVYDI+ + TF+ L  WL +  ++A+  +  +L+G    
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122

Query: 124 L 124
           L
Sbjct: 123 L 123

Length = 210

>gnl|CDD|204301 pfam09735, Nckap1, Membrane-associated apoptosis protein

 Score =  141 bits (356), Expect = 2e-34
 Identities = 66/95 (69%), Positives = 78/95 (82%), Gaps = 2/95 (2%)

Query: 252 KLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNIDIKS 311
           KLAEKLTI++DRGVGMLTRIYNIKKACGD KSKPSFLSDK LE  IK IV+KFPN+D ++
Sbjct: 5   KLAEKLTILNDRGVGMLTRIYNIKKACGDPKSKPSFLSDKFLEPSIKFIVRKFPNVDTRT 64

Query: 312 VS--GISQIRSDIVKSLSLYYYTFVDLLHFKDCVY 344
                + + + +I+KSLSLYYYTFVDL+ FKD V 
Sbjct: 65  QQLDAVQEEKEEILKSLSLYYYTFVDLMEFKDHVL 99

Expression of this protein was found to be markedly reduced in patients with Alzheimer's disease. It is involved in the regulation of actin polymerisation in the brain as part of a WAVE2 signalling complex. Length = 1118

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  130 bits (328), Expect = 2e-34
 Identities = 55/123 (44%), Positives = 87/123 (70%)

Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
           +Y +LFK+VL+G++GVGK+ ++ RFT+  F     +TIGV+F  +T+++  + +K QIWD
Sbjct: 8   EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWD 67

Query: 63  TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
           TAGQER+R+IT +YYR A   +LVYDI+ + TFD +  WLRE+ ++A   ++ ++ G  S
Sbjct: 68  TAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKS 127

Query: 123 GLK 125
            L 
Sbjct: 128 DLN 130

Length = 216

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  128 bits (324), Expect = 5e-34
 Identities = 61/111 (54%), Positives = 82/111 (73%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           +V+++G+ GVGKT L+ RFT   F     +T+GVDF IKTVE+  ++I+LQIWDTAGQER
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           F SIT +YYRSA  +ILVYDI+ + TFD L  W++ I++YAS     +LVG
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVG 112

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  122 bits (308), Expect = 2e-32
 Identities = 52/113 (46%), Positives = 79/113 (69%)

Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
           +FK++++GN+ VGKT  + R+    F     +T+G+DF +KTV  N++RIKLQIWDTAGQ
Sbjct: 1   MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQ 60

Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           ER+R+IT +YYR A   IL+YDI+ + +F+ + DW  +I+ Y+      +LVG
Sbjct: 61  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVG 113

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  120 bits (303), Expect = 2e-31
 Identities = 44/105 (41%), Positives = 67/105 (63%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            KV+++G++GVGKT L+ ++    F     ATIG DF+ K V +++  + LQIWDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFK 112
           RF+S+  ++YR A   +LVYD++   +F+ L  W  E    AS +
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPR 105

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  118 bits (298), Expect = 2e-30
 Identities = 50/169 (29%), Positives = 88/169 (52%), Gaps = 9/169 (5%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERI-KLQIWDTAGQ 66
           FKV+++G+ GVGKT +++R+  GVF     ATIGVDF +K +E +   + +LQ+WD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASF----KVLRVLVGGTS 122
           ERF  +T+ YY+ A   I+V+D++   TF+ +  W  +++   +      +  +L+    
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKC 120

Query: 123 GLKIVNEMASA--AGLLCTVDPALATALASDKTDLDEDE--HVLACLLM 167
            LK              C  +  +     S K +++ +E    L   ++
Sbjct: 121 DLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNIL 169

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  118 bits (298), Expect = 2e-30
 Identities = 54/184 (29%), Positives = 81/184 (44%), Gaps = 7/184 (3%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+V++G+ GVGKT L+ R     FP G   TIG     KT+E     IKLQ+WDTAGQE
Sbjct: 6   FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE 65

Query: 68  RFRSITQSYYRSAHALILVYDISCQP-TFDCLTDWLREIEEYASFKVLRVLVGGTSGLKI 126
            +RS+   YYR A+ +++VYD + +  + +   +WL E+ E A   V  +LVG     KI
Sbjct: 66  EYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGN----KI 121

Query: 127 VNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYL 186
                 ++             L             +A   ++  +            F  
Sbjct: 122 DLFDEQSSSEEILNQLNREVVLLVLAP--KAVLPEVANPALLETSAKSLTGPNVNELFKE 179

Query: 187 ASLE 190
              +
Sbjct: 180 LLRK 183

Length = 219

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  113 bits (285), Expect = 4e-29
 Identities = 49/118 (41%), Positives = 68/118 (57%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FKVVL+G   VGKT LV R+ +  F     +T    F  KTV I  +RI L IWDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLK 125
           R+ ++   YYR A   ILVYDI+   +F  +  W++E+++     +  V+VG    L+
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLE 118

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  113 bits (285), Expect = 1e-28
 Identities = 55/118 (46%), Positives = 82/118 (69%), Gaps = 3/118 (2%)

Query: 4   YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
           Y   FK++L+G++GVGK+ L+  F           TIGVDF IK + +  +R+KL IWDT
Sbjct: 11  YDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDT 69

Query: 64  AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFK-VLRVLVG 119
           AGQERFR++T SYYR+A  +ILVYD++ + TF  L+D W +E+E Y++ +  +++LVG
Sbjct: 70  AGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVG 127

Length = 211

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  111 bits (280), Expect = 2e-28
 Identities = 42/101 (41%), Positives = 68/101 (67%), Gaps = 2/101 (1%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN--NERIKLQIWDTAGQ 66
           KV++VGN  VGK+ +++RF +G+F      TIGVDF+ K + +   +E ++L +WDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEE 107
           E F +IT++YYR A A ILV+  + + +F+ +  W  ++E 
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEA 102

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  103 bits (257), Expect = 2e-25
 Identities = 50/112 (44%), Positives = 71/112 (63%), Gaps = 1/112 (0%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           KV++VG+  VGKTCL+ RF + VF     ATIGVDF ++  E+      LQ+WDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLRE-IEEYASFKVLRVLVG 119
           F+ I  +YYR A A+I+V+D++   + +    WL + ++E     VL  LVG
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVG 113

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  102 bits (256), Expect = 4e-25
 Identities = 42/116 (36%), Positives = 73/116 (62%), Gaps = 10/116 (8%)

Query: 4   YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINN---------- 53
           Y +L K++ +G++GVGKT  + R+T   F P    T+G+DF  K V  N+          
Sbjct: 1   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKA 60

Query: 54  ERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA 109
            R+ LQ+WDTAGQERFRS+T +++R A   +L++D++ + +F  + +W+ +++ +A
Sbjct: 61  FRVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHA 116

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  102 bits (256), Expect = 4e-25
 Identities = 47/118 (39%), Positives = 76/118 (64%), Gaps = 1/118 (0%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
           + Y +L K +LVG++ VGK  ++     G      G  +G+D+   T+ ++  R+KLQ+W
Sbjct: 1   KAYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLW 60

Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           DT+GQ RF +I +SY R A  +ILVYDI+ + +FD +  W++EI+E+A   V ++LVG
Sbjct: 61  DTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILVG 117

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  100 bits (252), Expect = 9e-25
 Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 1/97 (1%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V++G  GVGK+ L  RF  G F      TI  D   K + ++ E   L I DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQEE 59

Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
           F ++   Y R+    ILVY I+ + +F+ + +   +I
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQI 96

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =   99 bits (249), Expect = 3e-24
 Identities = 43/106 (40%), Positives = 65/106 (61%)

Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
           L KV+L+G+ GVGK+ L+ R+    F      TIGV+F+ K +E++   + LQIWDTAGQ
Sbjct: 5   LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ 64

Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFK 112
           ERFRS+   +YR +   +L + +    +F  L++W +E   YA  K
Sbjct: 65  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVK 110

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 96.3 bits (240), Expect = 5e-23
 Identities = 31/100 (31%), Positives = 65/100 (65%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           KV+ +GN+GVGK+C+++R+ +G F      TIG+D+ +K V + N+ +++  +D +G   
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY 108
           +  +   +Y+    ++LVYD++ + +F+ L  WL+E+++ 
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQE 101

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|204301 pfam09735, Nckap1, Membrane-associated apoptosis protein

 Score =  104 bits (261), Expect = 7e-23
 Identities = 48/115 (41%), Positives = 69/115 (60%), Gaps = 9/115 (7%)

Query: 96   DCLTDWLREIEE------YASFKVLRVLVGGTSGLKI---VNEMASAAGLLCTVDPALAT 146
            D   + LR + E       +S + L+  V   +  K+   + EMASAAG+ C VDPAL  
Sbjct: 913  DLAQEALRAVLESHVPFLMSSIEDLKEHVPEVTDKKVILRIFEMASAAGVPCDVDPALVN 972

Query: 147  ALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMAR 201
            AL + K +  E+++  +CLL+VFVAV +P LA  +  FY   +EGHSNNIHC+A+
Sbjct: 973  ALLAQKGENSEEDYKNSCLLLVFVAVSLPTLAMWDTSFYNPEIEGHSNNIHCLAK 1027

Expression of this protein was found to be markedly reduced in patients with Alzheimer's disease. It is involved in the regulation of actin polymerisation in the brain as part of a WAVE2 signalling complex. Length = 1118

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 89.9 bits (223), Expect = 5e-21
 Identities = 39/100 (39%), Positives = 61/100 (61%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K++L+G++ VGK+ LV RF    + P Q +T  +       +   + I +  WDTAGQER
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY 108
           F+++  SYY  AHA ILV+D++ + T+  L+ W  E+ EY
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREY 101

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 90.7 bits (225), Expect = 7e-21
 Identities = 39/101 (38%), Positives = 60/101 (59%), Gaps = 3/101 (2%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVF--PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
           KVV++G   VGKT LV R+    F   P Q  TIG  F+ K + +    + L IWDTAG 
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQN-TIGAAFVAKRMVVGERVVTLGIWDTAGS 60

Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEE 107
           ER+ ++++ YYR A A I+ YD++   +F+    W++E++ 
Sbjct: 61  ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQN 101

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 88.4 bits (220), Expect = 3e-20
 Identities = 50/238 (21%), Positives = 90/238 (37%), Gaps = 79/238 (33%)

Query: 10  VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE-- 67
           +V+VG+  VGKTCL+  +T   FP     T+  +     VE++ + ++L +WDTAGQE  
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTV-FENYSADVEVDGKPVELGLWDTAGQEDY 59

Query: 68  -RFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
            R R ++   Y      ++ + +    +F+ + + W  E++ +    V  +LVG      
Sbjct: 60  DRLRPLS---YPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP-NVPIILVG------ 109

Query: 126 IVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFY 185
                                     K DL  D+              + +L++      
Sbjct: 110 -------------------------TKLDLRNDKS------------TLEELSK------ 126

Query: 186 LASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR-HDMYYLETSAKASDNVEKLF 242
                               ++   +  E G+  AKR   + YLE SA   + V ++F
Sbjct: 127 --------------------KKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVF 164

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 88.7 bits (220), Expect = 5e-20
 Identities = 42/116 (36%), Positives = 64/116 (55%), Gaps = 4/116 (3%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEI-NNERIKLQIWDTAGQ 66
            K+V++G+   GKT L+RRF Q  F      TIG+DF  + + +  +  + LQ+WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWL---REIEEYASFKVLRVLVG 119
           +    +   Y   A A+ LVYDI+   +F+ L DWL   +++ E +  K   VLVG
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVG 116

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 86.7 bits (215), Expect = 9e-20
 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 3/115 (2%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQG-VFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
            K+V+VG+  VGK+ L+ R     +           +++   +E + +  K  + DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 67  ERFRSITQSYYRSAHALILVYDIS--CQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           E + +I + YYR+  + + V+DI        + L    +EI  +A   V  +LVG
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVG 116

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 85.7 bits (213), Expect = 2e-19
 Identities = 54/240 (22%), Positives = 87/240 (36%), Gaps = 74/240 (30%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V+VG+  VGKTCL+  +T   FP     T+  D     V ++ +++ L +WDTAGQE 
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 69  FRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYASFKVLRVLVGGTSGLKIV 127
           +  +    Y      +L + +    +F+   T W  EI+ Y    V  +LV GT      
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYC-PNVPIILV-GT------ 112

Query: 128 NEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLA 187
                                   K DL +D +             + KL + +      
Sbjct: 113 ------------------------KIDLRDDGNT------------LKKLEKKQKP---- 132

Query: 188 SLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMY-YLETSAKASDNVEKLFMQIA 246
                                  I  E GE  AK      Y+E SA   + ++++F +  
Sbjct: 133 -----------------------ITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAI 169

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 81.5 bits (201), Expect = 7e-18
 Identities = 36/81 (44%), Positives = 50/81 (61%), Gaps = 11/81 (13%)

Query: 173 CIPKLARNEACFYLASLEGHSNN--IHCMARNKIDR-EDREIPTEVGEDFAKRHDMYYLE 229
           C+P+        +L  +E ++NN  I  +  NKID  E RE+  +  E+F+   DMYYLE
Sbjct: 97  CLPE--------WLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLE 148

Query: 230 TSAKASDNVEKLFMQIAAELM 250
           TSAK SDNVEKLF+ +A  L+
Sbjct: 149 TSAKESDNVEKLFLDLACRLI 169

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score = 80.7 bits (200), Expect = 1e-17
 Identities = 40/109 (36%), Positives = 59/109 (54%), Gaps = 9/109 (8%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +K+V++G  GVGK+ L  +F QG F      TI  D   K +EI+ E   L I DTAGQE
Sbjct: 3   YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 61

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRV 116
            F ++   Y R+    +LVY I+ + +F+ +    RE       ++LRV
Sbjct: 62  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAK-FRE-------QILRV 102

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score = 80.3 bits (199), Expect = 2e-17
 Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 9/109 (8%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +K+V++G+ GVGK+ L  +F QG F      TI  D   K +EI+ E   L I DTAGQE
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 59

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRV 116
            F ++   Y R+    +LVY I+ + +F+ +    RE       ++LRV
Sbjct: 60  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKK-FRE-------QILRV 100

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 81.7 bits (202), Expect = 2e-17
 Identities = 35/98 (35%), Positives = 54/98 (55%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK++LVG+ GVGKT  V+R   G F      T+GV+        N   I   +WDTAGQE
Sbjct: 10  FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
           +F  +   YY      I+++D++ + T+  + +W R+I
Sbjct: 70  KFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDI 107

Length = 215

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 80.6 bits (198), Expect = 2e-17
 Identities = 39/99 (39%), Positives = 64/99 (64%)

Query: 38  ATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDC 97
           +TIG+DF+ KT+ ++   ++LQ+WDTAGQERFRS+  SY R + A I+VYDI+ + +F+ 
Sbjct: 11  STIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFEN 70

Query: 98  LTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGL 136
            T W+++I       V+  LVG  + L  + ++    G+
Sbjct: 71  TTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGM 109

Length = 176

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 78.8 bits (194), Expect = 5e-17
 Identities = 43/130 (33%), Positives = 71/130 (54%), Gaps = 4/130 (3%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +K+V++G+ GVGK+ L  +F QG+F      TI  D   K +E++ ++  L+I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTE 60

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLRE--IEEYASFKVLRVLVGGTSGLK 125
           +F ++   Y ++     LVY I+ Q +F+ L D LRE  +    +  V  +LVG    L+
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSITAQQSFNDLQD-LREQILRVKDTEDVPMILVGNKCDLE 119

Query: 126 IVNEMASAAG 135
               ++   G
Sbjct: 120 DERVVSKEEG 129

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 77.3 bits (191), Expect = 1e-16
 Identities = 35/98 (35%), Positives = 56/98 (57%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VLVG+ G GKT  V+R   G F     AT+GV+        N  +I+  +WDTAGQE
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
           +F  +   YY      I+++D++ + T+  + +W R++
Sbjct: 61  KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDL 98

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 77.2 bits (190), Expect = 2e-16
 Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 9/160 (5%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQ--GVFPPGQGATIGVDFMIKTVEI--NNERIKLQIWDTA 64
           +  +VG+  VGK+ LV+ F      F      T G D ++KTV +   ++ ++L I+D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 65  GQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVL-RVLVGGTSG 123
           GQE F  + ++ +     + +VYD++ + +F+  + W+  +  ++       VLVG    
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKCD 121

Query: 124 LKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163
           L    E+ +A         A A  L   +T   E     A
Sbjct: 122 LTDRREVDAAQA----QALAQANTLKFYETSAKEGVGYEA 157

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 77.4 bits (191), Expect = 3e-16
 Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 8/116 (6%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K+V+VG+ G GKTCL+  + QG FP     T+  +++      N + I+L +WDTAGQE
Sbjct: 4   VKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTAGQE 63

Query: 68  ---RFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
              R R ++   Y     +++ Y +    + D + D W  E+  +       VLVG
Sbjct: 64  DYDRLRPLS---YPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFCP-GTPIVLVG 115

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 74.0 bits (182), Expect = 7e-16
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 4/114 (3%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           KVV++G+ G GK+ L+ +   G FPP      G    + T+E++ +   L IWD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 69  FRSITQSYYRSAHALILVYDISCQPTF---DCLTDWLREIEEYASFKVLRVLVG 119
            +     + + A A++LVYD++ + +      L  WL  + +    K+  +LVG
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGG-KIPVILVG 113

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 73.7 bits (181), Expect = 3e-15
 Identities = 42/109 (38%), Positives = 65/109 (59%), Gaps = 9/109 (8%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +K+V++G+ GVGK+ L  +F QG+F      TI  D   K VE++ ++  L+I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTE 60

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRV 116
           +F ++   Y ++    +LVY I+ Q TF+ L D LRE       ++LRV
Sbjct: 61  QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQD-LRE-------QILRV 101

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 74.0 bits (182), Expect = 7e-15
 Identities = 34/100 (34%), Positives = 53/100 (53%)

Query: 6   FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
             FK+V+VG+ G GKT  V+R   G F      TIGV+        N  +I+   WDTAG
Sbjct: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71

Query: 66  QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
           QE+F  +   YY      I+++D++ + T+  +  W R++
Sbjct: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL 111

Length = 219

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 73.4 bits (180), Expect = 1e-14
 Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 5/111 (4%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           KVVL+G+  VGKT L+ R+ +  F     +T+G  F +K     N    + IWDTAG+E+
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQWGPYN----ISIWDTAGREQ 56

Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           F  +   Y R A A+IL YD+S   + + L D    + + A+   L  +VG
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVG 107

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 71.7 bits (176), Expect = 2e-14
 Identities = 31/96 (32%), Positives = 56/96 (58%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+ L+G+A +GKT L+ ++ +G F      T+GV+FM KT+ I    I   IWD  GQ  
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLRE 104
           F ++     + A A++ ++D++ + T + + +W R+
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQ 97

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 71.0 bits (174), Expect = 3e-14
 Identities = 51/154 (33%), Positives = 80/154 (51%), Gaps = 6/154 (3%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +KVV++G+ GVGK+ L  +F  G F      TI  DF  K +E+++    L+I DTAG E
Sbjct: 2   YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 60

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASF-KVLRVLVGGTSGLKI 126
           +F S+   Y ++    I+VY +  Q TF  +     +I     + KV  +LVG    L+ 
Sbjct: 61  QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES 120

Query: 127 VNEMASAAGLLCTVD---PALATALASDKTDLDE 157
             E++SA G     +   P + T+ A  KT ++E
Sbjct: 121 EREVSSAEGRALAEEWGCPFMETS-AKSKTMVNE 153

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|204301 pfam09735, Nckap1, Membrane-associated apoptosis protein

 Score = 75.5 bits (186), Expect = 7e-14
 Identities = 30/43 (69%), Positives = 36/43 (83%)

Query: 669 LKAFNAAHEMVHNQSDVNFPRLGQMIMDYEVPMKKLSEEFIPH 711
           L  +NAAHEM H QSD +FPRLGQMI+DY+ P+KKL EEF+PH
Sbjct: 148 LGLYNAAHEMQHGQSDCSFPRLGQMILDYDPPLKKLHEEFVPH 190

Expression of this protein was found to be markedly reduced in patients with Alzheimer's disease. It is involved in the regulation of actin polymerisation in the brain as part of a WAVE2 signalling complex. Length = 1118

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 69.3 bits (170), Expect = 8e-14
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 1/103 (0%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN-NERIKLQIWDTAGQE 67
           K++LVG  GVGKT L ++     F   + +T G++     +     ++I+L +WD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYAS 110
            + +  Q +  S    +LV+D+        +  WLR+I+ +  
Sbjct: 63  IYHATHQFFLTSRSLYLLVFDLRTGDEVSRVPYWLRQIKAFGG 105

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 70.0 bits (171), Expect = 1e-13
 Identities = 31/93 (33%), Positives = 50/93 (53%)

Query: 13  VGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSI 72
           VG+ G GKT  V+R   G F     AT+GV+        N   I+  +WDTAGQE+F  +
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 73  TQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
              YY      I+++D++ + T+  + +W R++
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDL 93

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 67.9 bits (166), Expect = 3e-13
 Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 14/146 (9%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +K+V++G  GVGK+ L  +F Q VF      TI  D   K VEI+  +  L+I DTAG E
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIE-DSYRKQVEIDGRQCDLEILDTAGTE 60

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLRE--IEEYASFKVLRVLVGGTSGLK 125
           +F ++ + Y +S    +LVY ++ + + + L + LRE  +    S  V  VLVG  + L+
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTSEASLNELGE-LREQVLRIKDSDNVPMVLVGNKADLE 119

Query: 126 IVNEMASAAGLLCTVDPALATALASD 151
             ++          V      +L+  
Sbjct: 120 --DDRQ--------VSREDGVSLSQQ 135

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 66.7 bits (163), Expect = 7e-13
 Identities = 58/238 (24%), Positives = 95/238 (39%), Gaps = 81/238 (34%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +K+V+VG  GVGK+ L  +F Q  F      TI  D   K  EI+ +  +L I DTAGQE
Sbjct: 3   YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWARLDILDTAGQE 61

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIV 127
            F ++ + Y R+    +LV+ ++ + +F+       E++++ + ++LRV        K  
Sbjct: 62  EFSAMREQYMRTGEGFLLVFSVTDRGSFE-------EVDKFHT-QILRV--------KDR 105

Query: 128 NEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLA 187
           +E            P +   L  +K DL+    V                +R E      
Sbjct: 106 DEF-----------PMI---LVGNKADLEHQRQV----------------SREEG----- 130

Query: 188 SLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI 245
                      +AR                    +  + Y+ETSAK   NV+K F  +
Sbjct: 131 ---------QELAR--------------------QLKIPYIETSAKDRVNVDKAFHDL 159

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 66.4 bits (163), Expect = 8e-13
 Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 5/82 (6%)

Query: 9  KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
          +++++G  G GKT ++ +   G        TIG  F ++TVE  N  +K  +WD  GQ++
Sbjct: 1  RILMLGLDGAGKTTILYKLKLGEVVTTI-PTIG--FNVETVEYKN--VKFTVWDVGGQDK 55

Query: 69 FRSITQSYYRSAHALILVYDIS 90
           R + + YY +   LI V D S
Sbjct: 56 IRPLWKHYYENTDGLIFVVDSS 77

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score = 65.2 bits (160), Expect = 2e-12
 Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 202 NKID-REDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
           NK D  + R + TE GE  AK   + ++ETSAK ++NVE+ F ++A E+++
Sbjct: 112 NKCDLEDQRVVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 65.6 bits (160), Expect = 2e-12
 Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 13/119 (10%)

Query: 11  VLVGNAGVGKTCLVRRFTQGVFPPG---QGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           V+VG  GVGK+ L+     G         G T   D      E++  ++KL + DT G +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDV--YVKELDKGKVKLVLVDTPGLD 58

Query: 68  RF-----RSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGT 121
            F       + +   R A  ++LV D + + + +   D    I      + + +++ G 
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEE---DAKLLILRRLRKEGIPIILVGN 114

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 64.1 bits (157), Expect = 6e-12
 Identities = 21/52 (40%), Positives = 35/52 (67%), Gaps = 1/52 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
           NK D E+ R++  E  E FA+ H + + ETSAK + NVE+ F ++A E++++
Sbjct: 113 NKSDLEEQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 64.2 bits (157), Expect = 6e-12
 Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 1/49 (2%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
           NK D  D R++ TE GE  AK ++  ++ETSAKA  NV++LF +IA  L
Sbjct: 113 NKTDLSDKRQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 64.0 bits (156), Expect = 7e-12
 Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 9/146 (6%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K VLVG+  VGKT L+  +T   +P     T   +F +  V ++ + ++LQ+ DTAGQ+ 
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVV-VLVDGKPVRLQLCDTAGQDE 60

Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGL--- 124
           F  +    Y      +L + +    +F  +++ W+ EI ++   K   +LVG  + L   
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNP-KAPIILVGTQADLRTD 119

Query: 125 -KIVNEMASAAGLLCTVDPALATALA 149
             ++ ++A        V  + A ALA
Sbjct: 120 VNVLIQLARYGEK--PVSQSRAKALA 143

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 64.2 bits (157), Expect = 8e-12
 Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 2/117 (1%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+ ++G+  VGK+ L  +F +G F      TI   F  K +    +   L+I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 69  FRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYASFKVLRVLVGGTSGL 124
           +  + Q Y    H  ILVY ++ + +F+     + + ++      V  VLVG  S L
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDL 118

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 64.0 bits (156), Expect = 9e-12
 Identities = 40/130 (30%), Positives = 70/130 (53%), Gaps = 9/130 (6%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+VLVG++  GKT L++ F +  FP     T+  +    + E++ +RI+L +WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV-FENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 69  FRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYA-SFKVLRVLVGGTSGL-- 124
           + ++    Y  + A+++ +DIS   T D  L  W  E+ E+  +  VL  LVG  S L  
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCPNTPVL--LVGCKSDLRT 119

Query: 125 --KIVNEMAS 132
               + E+++
Sbjct: 120 DLSTLTELSN 129

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 63.6 bits (155), Expect = 9e-12
 Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 2/118 (1%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +K+V+VG  GVGK+ L  +  Q  F      TI  D   K V I+ E   L I DTAGQE
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 60

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
            + ++   Y R+    + V+ I+ + +F+ +  +  +I+    S  V  VLVG    L
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDL 118

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 63.9 bits (155), Expect = 1e-11
 Identities = 40/119 (33%), Positives = 68/119 (57%), Gaps = 5/119 (4%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V+VG++  GKT L+  F +  FP     T+  ++   + EI+ +RI+L +WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPY 65

Query: 69  FRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYA-SFKVLRVLVGGTSGLK 125
           + ++    Y  + A+++ +DIS   T D  L  W  EI+E+  + K+L  LVG  S L+
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKML--LVGCKSDLR 122

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 49/236 (20%), Positives = 92/236 (38%), Gaps = 73/236 (30%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V+VG+   GKTCL+  F++  FP     T+  ++ +  +E++ ++++L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 61

Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLKIV 127
           +  +    Y     +++ + I    + + + + W  E++ +                   
Sbjct: 62  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF------------------- 102

Query: 128 NEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLA 187
                     C   P +   L  +K DL  DEH             I +LA+        
Sbjct: 103 ----------C---PNVPIILVGNKKDLRNDEHT------------IRELAK-------- 129

Query: 188 SLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMY-YLETSAKASDNVEKLF 242
                              +   +  E G   A++   + YLE SAK  + V ++F
Sbjct: 130 ------------------MKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVF 167

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 62.5 bits (153), Expect = 2e-11
 Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 202 NKID-REDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA 246
           NK D  ++R++ TE  + FAK + + + ETSAK  +NV++ F  +A
Sbjct: 113 NKSDLEDERQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLA 158

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 62.6 bits (153), Expect = 2e-11
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 3/68 (4%)

Query: 185 YLASLEGHS-NNIHCM-ARNKID-REDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL 241
           +L  L  H+ +NI  M   NK D R  R +PTE  + FA+++ + ++ETSA    NVE+ 
Sbjct: 97  WLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEA 156

Query: 242 FMQIAAEL 249
           F Q+  E+
Sbjct: 157 FKQLLTEI 164

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 62.2 bits (151), Expect = 3e-11
 Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 4/155 (2%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           ++VV+ G  GVGK+ LV RF +G F      TI  D   + +  +     LQI DT G  
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCSKSICTLQITDTTGSH 60

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLT---DWLREIEEYASFKVLRVLVGGTSGL 124
           +F ++ +      HA ILVY I+ + + + L    + + EI+     K+  +LVG     
Sbjct: 61  QFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDE 120

Query: 125 KIVNEMASAAGLLCTVDPALATALASDKTDLDEDE 159
               E++S+ G         A    S KT+ +  E
Sbjct: 121 SPSREVSSSEGAALARTWNCAFMETSAKTNHNVQE 155

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 61.4 bits (149), Expect = 8e-11
 Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 22/140 (15%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +K+V+VG  GVGK+ L  +F Q  F      TI  D   K   I+ E   L I DTAGQE
Sbjct: 6   YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIE-DSYRKQCVIDEETCLLDILDTAGQE 64

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFK--VLRV--------- 116
            + ++   Y R+    + VY I+ + +F+          E ASF+  +LRV         
Sbjct: 65  EYSAMRDQYMRTGQGFLCVYSITSRSSFE----------EIASFREQILRVKDKDRVPMI 114

Query: 117 LVGGTSGLKIVNEMASAAGL 136
           LVG    L    ++++  G 
Sbjct: 115 LVGNKCDLDSERQVSTGEGQ 134

Length = 189

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 60.4 bits (147), Expect = 9e-11
 Identities = 20/45 (44%), Positives = 33/45 (73%)

Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA 246
           NKID+E+RE+  E G+ FA++H+M ++ETSAK    V++ F ++ 
Sbjct: 114 NKIDKENREVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELV 158

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 60.2 bits (146), Expect = 2e-10
 Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 3/112 (2%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K V VG+  VGKTC++  +T   FP     T+  +F    V ++   + L +WDTAGQE 
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGNTVNLGLWDTAGQED 61

Query: 69  FRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYASFKVLRVLVG 119
           +  +    YR A   +L + +  + +++  L  W+ E+  YA   V  VLVG
Sbjct: 62  YNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAP-GVPIVLVG 112

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 4/112 (3%)

Query: 10  VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERF 69
           + LVG    GKT LV     G F      T+G  F ++ V   N  IK  +WD  GQ RF
Sbjct: 2   ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVG--FNMRKVTKGNVTIK--VWDLGGQPRF 57

Query: 70  RSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGT 121
           RS+ + Y R  +A++ V D + +   +   + L ++ E  S + + +LV G 
Sbjct: 58  RSMWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGN 109

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 59.9 bits (145), Expect = 3e-10
 Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 4/117 (3%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V++G+ GVGKT L  +     F      TI  D   K V ++ +   L++ DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIE-DSYRKQVVVDGQPCMLEVLDTAGQEE 59

Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTDW---LREIEEYASFKVLRVLVGGTS 122
           + ++   + R     ILVY I+ + TF+ +  +   ++ +++ ++  V  ++VG   
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKC 116

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 58.2 bits (141), Expect = 6e-10
 Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 5/100 (5%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            KV++VG+ GVGK+ L  +F    F      T   D   K V ++ E ++L I DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQLNILDTAGQE 59

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTD----WLR 103
            + +I  +Y+RS    +LV+ I+   +F  L +     LR
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILR 99

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 58.2 bits (141), Expect = 7e-10
 Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 202 NKIDRE-DREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
           NK D E  RE+  E GE FA+ H + ++ETSAK + NVE+ F+  A E+ +K
Sbjct: 117 NKCDLESRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYDK 168

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 58.7 bits (142), Expect = 7e-10
 Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 9/115 (7%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V+VG+   GKT L+  FT G FP     T+  +  +    ++ + ++L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTV-FENYVTDCRVDGKPVQLALWDTAGQEE 61

Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCL----TDWLREIEEYASFKVLRVLVG 119
           +  +    Y  AH +++ + I    T D L    T W+ E+  Y    V  +LVG
Sbjct: 62  YERLRPLSYSKAHVILIGFAID---TPDSLENVRTKWIEEVRRYCP-NVPVILVG 112

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 59.3 bits (143), Expect = 8e-10
 Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 3/112 (2%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V+VG+   GKT L+  F +  +P     T+  ++   + EI+  RI+L +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYT-ASFEIDKHRIELNMWDTSGSSY 61

Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLT-DWLREIEEYASFKVLRVLVG 119
           + ++    Y  + A+++ +DIS   T D +   W  E +E+     L VLVG
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKL-VLVG 112

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 5/136 (3%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           ++VVL+G++GVGK+ L   FT GV+        G D   +TV ++ E   L ++D   QE
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDC---LTDWLREIEEYASFKVLRVLVGGTSGL 124
               +  S  +   A ++VY ++ + +F+    L   LR   +     +  +LVG  S L
Sbjct: 61  DGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPI--ILVGNKSDL 118

Query: 125 KIVNEMASAAGLLCTV 140
               E++   G  C V
Sbjct: 119 VRSREVSVQEGRACAV 134

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 57.6 bits (139), Expect = 2e-09
 Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 2/101 (1%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           KVV++G+   GKT L+  FT+G FP     T+  ++ I  + ++   ++L +WDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-IHDIFVDGLAVELSLWDTAGQEE 60

Query: 69  FRSITQSYYRSAHALILVYDISCQPTF-DCLTDWLREIEEY 108
           F  +    Y   H ++L + +    +  +  + WL EI  +
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHH 101

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
           NK D  D + +     ++FA    + +LETSAK + NVE+ FM +A E+ ++
Sbjct: 115 NKCDLTDKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREIKKR 166

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 56.0 bits (135), Expect = 4e-09
 Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 16/137 (11%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +K+V++G  GVGK+ +  +F    FP     TI   +  +   I+NE   L I DTAGQ 
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQAR-IDNEPALLDILDTAGQA 61

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYAS--FKVLR------VLVG 119
            F ++   Y R     I+ Y ++ + +F       +E  E+     +V        VLVG
Sbjct: 62  EFTAMRDQYMRCGEGFIICYSVTDRHSF-------QEASEFKELITRVRLTEDIPLVLVG 114

Query: 120 GTSGLKIVNEMASAAGL 136
               L+   ++ +  G 
Sbjct: 115 NKVDLEQQRQVTTEEGR 131

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 55.8 bits (134), Expect = 6e-09
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 9  KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
          K V+VG+  VGKTCL+  +T   FP     T+  ++  +T  ++   + L +WDTAGQE 
Sbjct: 5  KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTA-VDGRTVSLNLWDTAGQEE 63

Query: 69 FRSITQSYYRSAHALILVYDISCQPTFD 96
          +  +    Y   +  I+ + I+   +++
Sbjct: 64 YDRLRTLSYPQTNVFIICFSIASPSSYE 91

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 55.2 bits (133), Expect = 7e-09
 Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 9/115 (7%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE- 67
           K V+VG+  VGKTCL+  +T   F PG+      D     V ++ + + L +WDTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 61

Query: 68  --RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
             R R ++   Y      ++ + +    +F+ +   W  E+  +       +LVG
Sbjct: 62  YDRLRPLS---YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVG 112

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 13/116 (11%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQG--VFPPGQ--GATIGVDFMI--------KTVEINNER- 55
           +V++VG++GVGK+ LV    +G  +  P Q  G T+GV  +          +++ ++ER 
Sbjct: 23  RVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERD 82

Query: 56  IKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASF 111
             +++WD +G ER++     +Y   + +I V+D+S + T   L  W  E+    +F
Sbjct: 83  FFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTF 138

Length = 334

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 18/102 (17%)

Query: 8  FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD----- 62
           +V ++G  GVGKT +VR+F    FP     T         V ++     L I D     
Sbjct: 1  VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 63 ----TAGQE----RFRSITQSYYRSAHALILVYDISCQPTFD 96
              TAGQE    RFR +     R++ A ILVYDI    +F 
Sbjct: 61 RYPGTAGQEWMDPRFRGL-----RNSRAFILVYDICSPDSFH 97

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 11/94 (11%)

Query: 10 VVLVGNAGVGKTCLVRR----FTQ--GVFPPGQ-GATIGVDFMIKTVEINNERIKLQIWD 62
          V+++G    GKT  + +    F++      P +   T+G++  I T+E+     +L  WD
Sbjct: 2  VLILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLN--IGTIEVGK--ARLMFWD 57

Query: 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFD 96
            GQE  RS+   YY  +H +I V D + +  F+
Sbjct: 58 LGGQEELRSLWDKYYAESHGVIYVIDSTDRERFN 91

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 13/119 (10%)

Query: 9   KVVLVGNAGVGKTCLVRRF-TQ---GVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTA 64
           K+ ++G +GVGK+ L  RF T+   G + P   +        + V I+ E++ L+I DT 
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYS-----RQVTIDGEQVSLEIQDTP 55

Query: 65  GQERF--RSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASF--KVLRVLVG 119
           GQ++       +   R A   +LVY I+ + +FD ++  L+ I E      ++  +LVG
Sbjct: 56  GQQQNEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVG 114

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 5/119 (4%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+VLVG+   GKT +++   +  +P     T+  ++    +E   +R++L +WDT+G   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPY 73

Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDC-LTDWLREIEEYA-SFKVLRVLVGGTSGLK 125
           + ++    Y  + A++L +DIS    FD  L  W  EI +Y  S ++L  L+G  + L+
Sbjct: 74  YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRIL--LIGCKTDLR 130

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 1/112 (0%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           ++V +G AGVGKT L++RF    F P    T+  +   K  E+   ++ + I DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGG 120
           F ++ +   ++  A  LVY +    +F+ +     EI E    K + ++V G
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVG 111

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 194 NNIH-CMARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELM 250
           NNI   +  NKID E  R +     E++AK     + ETSAK    +E+LF+ +A  ++
Sbjct: 104 NNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRMI 162

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 13/87 (14%)

Query: 8  FKVVLVGNAGVGKTCLVRRFTQGVF----PPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
           +++++G    GKT ++ +   G      P     TIG  F ++TV   N  +K  +WD 
Sbjct: 15 MRILILGLDNAGKTTILYKLKLGEIVTTIP-----TIG--FNVETVTYKN--VKFTVWDV 65

Query: 64 AGQERFRSITQSYYRSAHALILVYDIS 90
           GQE  R + ++Y+ +  A+I V D +
Sbjct: 66 GGQESLRPLWRNYFPNTDAVIFVVDSA 92

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 53.3 bits (128), Expect = 4e-08
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 3/112 (2%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K V+VG+  VGKTCL+  +T   FP     T+  ++ + TV I  E   L ++DTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 61

Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
           +  +    Y      ++ + +    +F+ + + W+ EI  +   K   +LVG
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 112

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 22/52 (42%), Positives = 36/52 (69%), Gaps = 1/52 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
           NK D E+ R +  E GE  A+ + + +LETSAKA+ NVE+ F+ +A ++++K
Sbjct: 116 NKCDMEEKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDILKK 167

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 53.4 bits (128), Expect = 6e-08
 Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 7/92 (7%)

Query: 171 AVCIPKLARNEACFYLAS-LEG---HSN-NIHCM-ARNKID-REDREIPTEVGEDFAKRH 223
           A+ +  + R E   +LAS LE    H+N N+  M   NK D    R + TE GE FAK H
Sbjct: 82  ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH 141

Query: 224 DMYYLETSAKASDNVEKLFMQIAAELMEKLAE 255
            + ++E SAK + NVE+ F++ AA++ +K+ +
Sbjct: 142 GLIFMEASAKTAQNVEEAFIKTAAKIYKKIQD 173

Length = 210

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 41/144 (28%), Positives = 64/144 (44%), Gaps = 17/144 (11%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPG-----QGATIGVDFMIKTVEINNERIKLQIWDT 63
           ++VL+G+ GVGK+ L+       FP          TI  D          ER+   I DT
Sbjct: 4   RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADV-------TPERVPTTIVDT 56

Query: 64  AGQERFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVGGTS 122
           + + + R+   +  R A+ + LVY +    T + + T WL  I      KV  +LVG  S
Sbjct: 57  SSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKS 115

Query: 123 GLKIVNEMASAAGLLCTVDPALAT 146
            L+   + +S AGL   + P +  
Sbjct: 116 DLR---DGSSQAGLEEEMLPIMNE 136

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 51.6 bits (123), Expect = 2e-07
 Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 3/113 (2%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +    FP     T+  D    +V +  ++  L ++DTAGQE
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQE 59

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTF-DCLTDWLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F +   +W+ E++EYA   V  +L+G
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPYLLIG 111

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score = 50.2 bits (121), Expect = 3e-07
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
           NK D E  R + TE G++ A++    +LETSAK   NV++ F  +  E+ +K
Sbjct: 113 NKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIRKK 164

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score = 49.9 bits (120), Expect = 5e-07
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELM 250
           NK D E+ R + TE G++ A++    +LETSAK   NV++ F  +  E+ 
Sbjct: 115 NKCDLENERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLVREIR 164

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF 242
           NK D E+ R++ TE GE  A+     +LETSAK + N+++LF
Sbjct: 112 NKCDLENERQVSTEEGEALAEEWGCPFLETSAKTNINIDELF 153

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 13/84 (15%)

Query: 9  KVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDTA 64
          ++++VG    GKT ++ +   G      P     TIG  F ++TV   N  I   +WD  
Sbjct: 15 RILMVGLDAAGKTTILYKLKLGESVTTIP-----TIG--FNVETVTYKN--ISFTVWDVG 65

Query: 65 GQERFRSITQSYYRSAHALILVYD 88
          GQ++ R + + YY +   LI V D
Sbjct: 66 GQDKIRPLWRHYYTNTQGLIFVVD 89

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 48.1 bits (114), Expect = 4e-06
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 189 LEGHSNNIHC---MARNKIDRE-DREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ 244
           +E +S N  C   +  NK+DRE +R++  E G   AK H   +LE SAK  +NVE+ F +
Sbjct: 112 VELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEE 171

Query: 245 IAAELME 251
           +A ++ME
Sbjct: 172 LALKIME 178

Length = 211

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 13/87 (14%)

Query: 8  FKVVLVGNAGVGKTCLVRRF----TQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
           +++++G    GKT ++++F       + P     T+G  F IKT+E N    KL IWD 
Sbjct: 15 MRILMLGLDNAGKTTILKKFNGEDISTISP-----TLG--FNIKTLEYNG--YKLNIWDV 65

Query: 64 AGQERFRSITQSYYRSAHALILVYDIS 90
           GQ+  RS  ++Y+ S  ALI V D S
Sbjct: 66 GGQKSLRSYWRNYFESTDALIWVVDSS 92

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 47.6 bits (113), Expect = 6e-06
 Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 9/112 (8%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQG---VFPPGQ-GATIGVDFMIKTVEINNER-IKLQIWDT 63
           KV+++G++GVGK+ LV    +      P    G ++ V           E+   +++WD 
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWDV 61

Query: 64  AGQ----ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASF 111
            G     E  +S    +Y   + +I V+D++ + +   L  W  E     +F
Sbjct: 62  GGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRDTF 113

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 5/81 (6%)

Query: 8  FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
          +KV++VG    GKT ++ +F  G        TIG +  ++ +   N  I+  +WD  GQE
Sbjct: 16 YKVIIVGLDNAGKTTILYQFLLGEVVHTS-PTIGSN--VEEIVYKN--IRFLMWDIGGQE 70

Query: 68 RFRSITQSYYRSAHALILVYD 88
            RS   +YY +  A+ILV D
Sbjct: 71 SLRSSWNTYYTNTDAVILVID 91

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 46.6 bits (110), Expect = 8e-06
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 8/107 (7%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           +VV +G  G GKT ++ +  Q  F      TIG  F ++TVE  N  +K  IWD  G+ +
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEFMQPI-PTIG--FNVETVEYKN--LKFTIWDVGGKHK 55

Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLR 115
            R + + YY +  A++ V D S     D +++   E+ +  + K LR
Sbjct: 56  LRPLWKHYYLNTQAVVFVID-SSHR--DRVSEAHSELAKLLTEKELR 99

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 4/52 (7%)

Query: 202 NKID-REDREIPTEVGEDFAKRHDMYYLETSAKA---SDNVEKLFMQIAAEL 249
           NK D RE  ++PT++ + FA  H M   ETSAK    +D+VE +FM +A +L
Sbjct: 117 NKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 203 KIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
           K D E  R++  E  E  AK   M Y+ETSA+  DNVE+ F  +  E+ E+
Sbjct: 118 KCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYER 168

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 13/84 (15%)

Query: 9  KVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDTA 64
          ++++VG    GKT ++ +   G      P     TIG  F ++TVE  N  +K  +WD  
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEVVTTIP-----TIG--FNVETVEYKN--LKFTMWDVG 69

Query: 65 GQERFRSITQSYYRSAHALILVYD 88
          GQ++ R + + YY++ + LI V D
Sbjct: 70 GQDKLRPLWRHYYQNTNGLIFVVD 93

Length = 182

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 13/84 (15%)

Query: 9  KVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDTA 64
          ++++VG    GKT ++ +   G      P     TIG  F ++TVE  N  I   +WD  
Sbjct: 2  RILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIG--FNVETVEYKN--ISFTVWDVG 52

Query: 65 GQERFRSITQSYYRSAHALILVYD 88
          GQ++ R + + Y+++   LI V D
Sbjct: 53 GQDKIRPLWRHYFQNTQGLIFVVD 76

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 202 NKIDRED-REIPTEVGEDFAK-RHDMYYLETSAKASDNVEKLFMQIAAELMEKLAE 255
           NKID E+ R++ T+  + + K + ++ Y ETSAK + NV++ F  IA   +E+  E
Sbjct: 117 NKIDLEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARLALEQEKE 172

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 1/103 (0%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +++V++G + VGKT +V RF  G F      TI  DF  K   I  E  +L I DT+G  
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH 59

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYAS 110
            F ++ +    +    ILV+ +  + +F+ +     +I E  S
Sbjct: 60  PFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKS 102

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 15/113 (13%)

Query: 10  VVLVGNAGVGKTCLVRRF------TQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
           ++++G    GKT ++ +       +Q + P     T+G  F +++ +  N  +    +D 
Sbjct: 2   ILVLGLDNSGKTTIINQLKPSNAQSQNIVP-----TVG--FNVESFKKGN--LSFTAFDM 52

Query: 64  AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRV 116
           +GQ ++R + + YY++   +I V D S +       D L  +  +   K  R+
Sbjct: 53  SGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRI 105

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 19/48 (39%), Positives = 27/48 (56%)

Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
           NK D   R + T  G+D AK + + Y+ETSAK    VE+ F  +  E+
Sbjct: 114 NKCDLAARTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 43.6 bits (103), Expect = 7e-05
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 191 GHSNNIHCMARNKIDRED-REIPTEVGEDFAKRHDMYY-LETSAKASDNVEKLFMQIAAE 248
           G SN +  +  NK D E+ RE+  E     A+ + +   LETSAK S NVE+ F+ +A E
Sbjct: 105 GASNVVLLLIGNKCDLEEQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMATE 164

Query: 249 L 249
           L
Sbjct: 165 L 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region

 Score = 44.5 bits (106), Expect = 7e-05
 Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 18/108 (16%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFP---PGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
           KV+L+G  G GK+ +         P      GATI V+   ++       + L +WD  G
Sbjct: 1   KVLLMGLRGSGKSSMRSIIFSNYSPRDTLRLGATIDVE---QSHVRFLGNLTLNLWDCPG 57

Query: 66  QERFRSITQSY-----YRSAHALILVYDISCQPTFDCLTDWLREIEEY 108
           Q+ F     +      + +   LI V+D+  +       ++  ++   
Sbjct: 58  QDDFMENYLTRQKEHIFSNVGVLIYVFDVESR-------EYEEDLATL 98

GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230

>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 11/112 (9%)

Query: 10  VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERF 69
           ++ VG    GKT LV    QG  P     T+G      T ++  ++ ++ I+D  G   F
Sbjct: 2   LLTVGLDNAGKTTLVSAL-QGEIPKKVAPTVG---FTPT-KLRLDKYEVCIFDLGGGANF 56

Query: 70  RSITQSYYRSAHALILVYDIS----CQPTFDCLTDWLREIEEYASFKVLRVL 117
           R I  +YY  AH L+ V D S     Q   + L + L+      S K + VL
Sbjct: 57  RGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQ--HPRVSGKPILVL 106

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
           NK D E  R++  E  + FA  + + +LE SAK  +NVE  F++ A ++ + 
Sbjct: 115 NKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQN 166

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 11/113 (9%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFP---PGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
           +++L+G    GKT ++++          P QG      F IK V    +  KL +WD  G
Sbjct: 17  RILLLGLDNAGKTTILKQLASEDISHITPTQG------FNIKNV--QADGFKLNVWDIGG 68

Query: 66  QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLV 118
           Q + R   ++Y+ +   LI V D + +  F+     L E+ E      + VLV
Sbjct: 69  QRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLV 121

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 13/84 (15%)

Query: 9  KVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDTA 64
          ++++VG    GKT ++ +   G      P     TIG  F ++TVE  N  I   +WD  
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIG--FNVETVEYKN--ISFTVWDVG 69

Query: 65 GQERFRSITQSYYRSAHALILVYD 88
          GQ++ R + + Y+++   LI V D
Sbjct: 70 GQDKIRPLWRHYFQNTQGLIFVVD 93

Length = 181

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 42 VDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDIS 90
          V F ++TV   N  +K  +WD  GQ++ R + + YY     LI V D +
Sbjct: 41 VGFNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSA 87

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)

Query: 185 YLASLEGH--SNNIHCMARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKL 241
           +L  L  H  SN +  MA NK D    R +  E G+  A++  + +LETSA  + NVEK 
Sbjct: 106 WLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKA 165

Query: 242 FMQIAAELMEKLAEK 256
           F  I  E+   +++K
Sbjct: 166 FQTILLEIYHIISKK 180

Length = 216

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 202 NKID-REDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
           NK D   +R++  E G+  A+     +LE+SAK ++NVE+ F  +  E +EK
Sbjct: 114 NKSDLHMERQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEE-IEK 164

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 13/84 (15%)

Query: 9  KVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDTA 64
          +++++G  G GKT ++ R   G      P     TIG  F ++TV   N  +K Q+WD  
Sbjct: 1  RILILGLDGAGKTTILYRLQVGEVVTTIP-----TIG--FNVETVTYKN--LKFQVWDLG 51

Query: 65 GQERFRSITQSYYRSAHALILVYD 88
          GQ   R   + YY +  A+I V D
Sbjct: 52 GQTSIRPYWRCYYSNTDAIIYVVD 75

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
           NK D ED R++  E   + A++  + Y+ETSAK   NV+K+F  +  E+
Sbjct: 113 NKCDLEDKRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREI 161

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 202 NKID-REDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
           NK D   +R +  E GE  AK + + ++ETSAK   NVE  F  +A EL
Sbjct: 114 NKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKEL 162

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 21/54 (38%), Positives = 38/54 (70%), Gaps = 2/54 (3%)

Query: 202 NKIDRE-DREIPTEVGEDFAKR-HDMYYLETSAKASDNVEKLFMQIAAELMEKL 253
           NK+D E DREI  + GE FA++   M + E SAK + NV+++F+++  ++++K+
Sbjct: 113 NKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 166

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF 242
           NK D ED R +  E G++ A++    +LETSAKA  NV ++F
Sbjct: 114 NKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIF 155

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 14/88 (15%)

Query: 8  FKVVLVGNAGVGKTCLVRR--FTQGV--FPPGQGATIGVDFMIKTVEINN---ERIKLQI 60
            +V++G    GKT ++ R  F + V   P     T G  F  + ++++    + +    
Sbjct: 4  LHIVMLGLDSAGKTTVLYRLKFNEFVNTVP-----TKG--FNTEKIKVSLGNAKGVTFHF 56

Query: 61 WDTAGQERFRSITQSYYRSAHALILVYD 88
          WD  GQE+ R + +SY R    ++ V D
Sbjct: 57 WDVGGQEKLRPLWKSYTRCTDGIVFVVD 84

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 12/86 (13%)

Query: 9  KVVLVGNAGVGKTCLVRRFTQGVF----PPGQGATIGVDFMIKTVEINNERIKLQIWDTA 64
          +V+L+G    GK+ L+ +          P     T+G  F ++ +++  + + L +WD  
Sbjct: 1  QVLLLGLDSAGKSTLLYKLKHAELVTTIP-----TVG--FNVEMLQLE-KHLSLTVWDVG 52

Query: 65 GQERFRSITQSYYRSAHALILVYDIS 90
          GQE+ R++ + Y  +   L+ V D S
Sbjct: 53 GQEKMRTVWKCYLENTDGLVYVVDSS 78

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	730
KOG1917|consensus	1125		100.0
PF09735	1116	Nckap1: Membrane-associated apoptosis protein; Int	100.0
KOG0084|consensus	205		100.0
KOG0078|consensus	207		100.0
KOG0098|consensus	216		99.98
KOG0094|consensus	221		99.97
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.97
KOG0092|consensus	200		99.97
KOG0394|consensus	210		99.97
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.97
KOG0080|consensus	209		99.97
KOG0095|consensus	213		99.97
KOG0087|consensus	222		99.97
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.97
KOG0086|consensus	214		99.96
KOG0079|consensus	198		99.96
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.96
KOG0091|consensus	213		99.96
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.96
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.96
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.96
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.96
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.96
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.96
PRK03003	472	GTP-binding protein Der; Reviewed	99.96
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.96
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.96
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.96
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.96
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.95
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.95
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.95
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.95
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.95
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.95
KOG0093|consensus	193		99.95
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.95
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.95
COG1160	444	Predicted GTPases [General function prediction onl	99.95
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.95
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.95
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.95
PTZ00369	189	Ras-like protein; Provisional	99.95
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.95
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.95
PLN03110	216	Rab GTPase; Provisional	99.95
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.95
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.95
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.95
PLN03108	210	Rab family protein; Provisional	99.95
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.95
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.95
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.95
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.95
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.95
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.95
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.95
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.95
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.95
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.95
KOG0081|consensus	219		99.95
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.95
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.94
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.94
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.94
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.94
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.94
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.94
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.94
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.94
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.94
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.94
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.94
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.94
KOG0097|consensus	215		99.94
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.94
PRK00093	435	GTP-binding protein Der; Reviewed	99.94
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.94
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.94
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.94
KOG0393|consensus	198		99.94
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.94
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.94
KOG0088|consensus	218		99.93
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.93
KOG0083|consensus	192		99.93
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.93
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.93
PLN03118	211	Rab family protein; Provisional	99.93
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.93
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.93
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.93
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.93
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.93
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.93
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.93
KOG0395|consensus	196		99.93
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.93
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.92
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.92
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.91
COG1163	365	DRG Predicted GTPase [General function prediction	99.91
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.91
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.91
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.91
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.91
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.91
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.9
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.9
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.9
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.9
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.9
PLN00223	181	ADP-ribosylation factor; Provisional	99.9
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.89
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.89
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.89
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.89
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.89
PTZ00133	182	ADP-ribosylation factor; Provisional	99.89
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.89
KOG4252|consensus	246		99.89
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.89
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.87
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.87
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.87
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.86
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.86
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.86
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.86
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.85
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.84
PTZ00099	176	rab6; Provisional	99.84
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.83
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.83
PLN00023	334	GTP-binding protein; Provisional	99.83
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.83
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.82
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.82
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.82
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.81
KOG0073|consensus	185		99.81
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.81
COG1100	219	GTPase SAR1 and related small G proteins [General	99.81
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.8
PRK12299	335	obgE GTPase CgtA; Reviewed	99.78
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.77
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.77
PRK04213	201	GTP-binding protein; Provisional	99.75
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.74
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.74
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.73
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.73
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.73
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.72
PRK03003	472	GTP-binding protein Der; Reviewed	99.72
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.72
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.71
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.7
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.7
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.69
KOG0070|consensus	181		99.69
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.69
cd00881	189	GTP_translation_factor GTP translation factor fami	99.69
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.68
PRK15494	339	era GTPase Era; Provisional	99.68
KOG1486|consensus	364		99.68
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.68
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.67
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.67
KOG1673|consensus	205		99.66
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.66
KOG0096|consensus	216		99.66
PRK12297	424	obgE GTPase CgtA; Reviewed	99.66
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.66
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.65
PRK11058	426	GTPase HflX; Provisional	99.65
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.65
PRK12296	500	obgE GTPase CgtA; Reviewed	99.64
PRK00093	435	GTP-binding protein Der; Reviewed	99.64
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.63
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.62
KOG4423|consensus	229		99.61
KOG3883|consensus	198		99.61
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.61
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.61
KOG0075|consensus	186		99.6
PRK12298	390	obgE GTPase CgtA; Reviewed	99.59
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.59
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.58
PRK05433	600	GTP-binding protein LepA; Provisional	99.57
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.57
KOG0071|consensus	180		99.57
PRK00089	292	era GTPase Era; Reviewed	99.56
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.56
PRK05306	787	infB translation initiation factor IF-2; Validated	99.56
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.55
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.55
CHL00189	742	infB translation initiation factor 2; Provisional	99.54
KOG0076|consensus	197		99.5
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.49
COG1160	444	Predicted GTPases [General function prediction onl	99.48
PRK09602	396	translation-associated GTPase; Reviewed	99.48
PRK12317	425	elongation factor 1-alpha; Reviewed	99.48
KOG1707|consensus	625		99.47
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.46
COG0486	454	ThdF Predicted GTPase [General function prediction	99.45
KOG0074|consensus	185		99.44
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.43
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.43
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.43
PF09735	1116	Nckap1: Membrane-associated apoptosis protein; Int	99.42
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.42
KOG1191|consensus	531		99.42
COG1159	298	Era GTPase [General function prediction only]	99.41
KOG0072|consensus	182		99.4
PRK10218	607	GTP-binding protein; Provisional	99.4
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.4
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.39
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.39
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.37
PRK04004	586	translation initiation factor IF-2; Validated	99.37
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.36
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.36
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.35
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.34
KOG1423|consensus	379		99.33
PTZ00258	390	GTP-binding protein; Provisional	99.33
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.31
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.29
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.28
KOG1489|consensus	366		99.27
COG2229	187	Predicted GTPase [General function prediction only	99.27
PRK12735	396	elongation factor Tu; Reviewed	99.26
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.25
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.24
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.24
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.24
PRK12736	394	elongation factor Tu; Reviewed	99.23
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.22
COG0218	200	Predicted GTPase [General function prediction only	99.22
KOG1487|consensus	358		99.2
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.2
CHL00071	409	tufA elongation factor Tu	99.2
PLN00043	447	elongation factor 1-alpha; Provisional	99.18
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.16
PRK13351	687	elongation factor G; Reviewed	99.15
COG1084	346	Predicted GTPase [General function prediction only	99.15
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.11
KOG0090|consensus	238		99.11
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.11
PLN03126	478	Elongation factor Tu; Provisional	99.1
KOG1490|consensus	620		99.09
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.08
PRK00049	396	elongation factor Tu; Reviewed	99.07
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.06
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.06
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.05
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.04
PRK09601	364	GTP-binding protein YchF; Reviewed	99.04
COG2262	411	HflX GTPases [General function prediction only]	99.03
KOG0077|consensus	193		99.03
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.03
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.0
COG0536	369	Obg Predicted GTPase [General function prediction	98.99
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	98.99
PLN03127	447	Elongation factor Tu; Provisional	98.98
KOG3905|consensus	473		98.97
PTZ00141	446	elongation factor 1- alpha; Provisional	98.97
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	98.95
PRK12739	691	elongation factor G; Reviewed	98.94
KOG0462|consensus	650		98.92
PRK12740	668	elongation factor G; Reviewed	98.91
PRK00007	693	elongation factor G; Reviewed	98.9
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.89
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.86
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	98.83
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	98.81
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	98.81
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	98.8
PRK14845	1049	translation initiation factor IF-2; Provisional	98.78
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.77
KOG1145|consensus	683		98.77
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	98.68
PRK09866	741	hypothetical protein; Provisional	98.67
COG3596	296	Predicted GTPase [General function prediction only	98.66
KOG1707|consensus	625		98.65
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	98.64
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.64
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	98.6
KOG1917|consensus	1125		98.58
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.58
PF14714	80	KH_dom-like: KH-domain-like of EngA bacterial GTPa	98.56
KOG0705|consensus	749		98.52
PRK13768	253	GTPase; Provisional	98.48
PLN00116	843	translation elongation factor EF-2 subunit; Provis	98.47
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.47
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	98.47
PTZ00416	836	elongation factor 2; Provisional	98.43
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	98.42
KOG1144|consensus	1064		98.37
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.37
PRK07560	731	elongation factor EF-2; Reviewed	98.33
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.24
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.2
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	98.18
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	98.15
KOG0082|consensus	354		98.13
KOG0410|consensus	410		98.12
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	98.12
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.07
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.06
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.05
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.04
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.01
KOG0461|consensus	522		97.99
COG1217	603	TypA Predicted membrane GTPase involved in stress	97.98
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	97.97
PRK12289	352	GTPase RsgA; Reviewed	97.96
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	97.94
KOG3886|consensus	295		97.93
PRK00098	298	GTPase RsgA; Reviewed	97.92
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.92
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	97.91
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	97.91
KOG0458|consensus	603		97.91
KOG0468|consensus	971		97.9
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.87
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	97.86
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	97.86
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	97.85
KOG1532|consensus	366		97.85
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	97.82
PRK12288	347	GTPase RsgA; Reviewed	97.78
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	97.75
KOG1491|consensus	391		97.74
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	97.73
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	97.71
PRK09563	287	rbgA GTPase YlqF; Reviewed	97.71
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	97.7
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	97.66
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	97.59
COG3276	447	SelB Selenocysteine-specific translation elongatio	97.56
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	97.49
COG1161	322	Predicted GTPases [General function prediction onl	97.48
KOG4273|consensus	418		97.47
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.47
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	97.43
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	97.34
KOG2486|consensus	320		97.18
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	97.15
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	97.13
KOG1954|consensus	532		97.09
COG0050	394	TufB GTPases - translation elongation factors [Tra	97.07
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	97.02
PRK12288	347	GTPase RsgA; Reviewed	97.0
KOG1143|consensus	591		96.98
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	96.97
PRK13796	365	GTPase YqeH; Provisional	96.95
PRK12289	352	GTPase RsgA; Reviewed	96.94
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	96.94
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	96.88
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	96.84
KOG1547|consensus	336		96.84
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	96.82
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	96.79
PRK13796	365	GTPase YqeH; Provisional	96.77
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	96.73
COG5019	373	CDC3 Septin family protein [Cell division and chro	96.71
KOG2655|consensus	366		96.68
COG5258	527	GTPBP1 GTPase [General function prediction only]	96.65
KOG1424|consensus	562		96.5
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	96.49
KOG0448|consensus	749		96.34
PRK09563	287	rbgA GTPase YlqF; Reviewed	96.29
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	96.24
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	96.21
COG1162	301	Predicted GTPases [General function prediction onl	96.2
PRK00098	298	GTPase RsgA; Reviewed	96.19
KOG0463|consensus	641		96.03
TIGR00064	272	ftsY signal recognition particle-docking protein F	95.92
cd03112	158	CobW_like The function of this protein family is u	95.85
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	95.83
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	95.75
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	95.69
KOG2484|consensus	435		95.68
KOG3887|consensus	347		95.41
PRK01889	356	GTPase RsgA; Reviewed	95.39
KOG0467|consensus	887		95.34
KOG0464|consensus	753		95.11
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	95.09
PRK14974	336	cell division protein FtsY; Provisional	94.75
PRK13695	174	putative NTPase; Provisional	94.7
KOG2485|consensus	335		94.5
KOG3859|consensus	406		94.46
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	94.32
KOG0466|consensus	466		94.31
KOG0460|consensus	449		94.19
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	94.06
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	93.96
PRK10416	318	signal recognition particle-docking protein FtsY;	93.82
KOG0447|consensus	980		93.75
COG3523	1188	IcmF Type VI protein secretion system component Va	93.69
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	93.65
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	93.33
KOG0085|consensus	359		93.26
PF13173	128	AAA_14: AAA domain	93.25
COG3845	501	ABC-type uncharacterized transport systems, ATPase	93.15
PRK08118	167	topology modulation protein; Reviewed	93.14
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	93.08
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	93.0
KOG0465|consensus	721		92.94
PRK07261	171	topology modulation protein; Provisional	92.88
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	92.85
TIGR00959	428	ffh signal recognition particle protein. This mode	92.83
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	92.79
PF00005	137	ABC_tran: ABC transporter This structure is on hol	92.48
cd03111	106	CpaE_like This protein family consists of proteins	92.47
PRK14738	206	gmk guanylate kinase; Provisional	92.46
smart00382	148	AAA ATPases associated with a variety of cellular	92.38
PRK14737	186	gmk guanylate kinase; Provisional	91.99
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	91.9
COG0523	323	Putative GTPases (G3E family) [General function pr	91.69
PF00004	132	AAA: ATPase family associated with various cellula	91.68
KOG0099|consensus	379		91.66
PRK01889	356	GTPase RsgA; Reviewed	91.58
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	91.58
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	91.38
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	91.36
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	91.18
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	91.17
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	91.11
PF13555	62	AAA_29: P-loop containing region of AAA domain	91.08
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	90.97
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	90.97
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	90.9
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	90.89
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	90.82
PRK06217	183	hypothetical protein; Validated	90.75
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	90.67
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	90.67
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	90.65
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	90.51
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	90.49
COG1162	301	Predicted GTPases [General function prediction onl	90.48
KOG0780|consensus	483		90.39
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	90.32
KOG0066|consensus	807		90.3
PRK03839	180	putative kinase; Provisional	90.27
PRK05541	176	adenylylsulfate kinase; Provisional	90.26
PRK14530	215	adenylate kinase; Provisional	90.25
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	90.15
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	90.09
PF05729	166	NACHT: NACHT domain	90.02
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	89.94
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	89.84
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	89.82
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	89.79
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	89.75
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	89.68
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	89.57
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	89.55
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	89.54
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	89.52
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	89.47
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	89.45
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	89.37
PRK14532	188	adenylate kinase; Provisional	89.37
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	89.33
PRK00300	205	gmk guanylate kinase; Provisional	89.29
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	89.23
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	89.23
PRK08233	182	hypothetical protein; Provisional	89.23
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	89.15
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	89.12
PRK13949	169	shikimate kinase; Provisional	89.11
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	89.1
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	89.1
KOG0469|consensus	842		89.07
TIGR00235	207	udk uridine kinase. Model contains a number of lon	89.07
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	89.07
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	89.04
PRK02496	184	adk adenylate kinase; Provisional	88.98
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	88.97
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	88.96
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	88.93
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	88.91
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	88.87
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	88.85
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	88.83
KOG2423|consensus	572		88.82
cd03269	210	ABC_putative_ATPase This subfamily is involved in	88.78
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	88.76
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	88.74
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	88.74
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	88.73
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	88.7
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	88.7
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	88.68
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	88.66
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	88.62

>KOG1917|consensus

Probab=100.00  E-value=3.2e-76  Score=665.63  Aligned_cols=238  Identities=60%  Similarity=0.932  Sum_probs=232.0

Q ss_pred             HHHHHhhhccCCccccccccCCCCcccccchhhhcchHHHHHHHHHHHHhhcccceeEEEeeeechHHHHHHhHHHHHHH
Q psy17467        386 QIASRRKKDKNNKKILNEIIKPGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESRFSR  465 (730)
Q Consensus       386 ~~~~kkkk~~k~kK~~~~~~~pg~es~~~~~~~~~~~d~~~~~l~~lc~~~~~~~~i~v~~~~f~p~eyl~~~l~~~f~~  465 (730)
                      .+.++|++++|++|+++++.+||+|||||||..+|+|||||++|||||+++|++++|+||||+|+|||||++|||.||.|
T Consensus       636 ~a~~~k~~s~k~~k~~~~r~kpG~ESyrknr~~lt~lDklh~~LteLc~~ln~~~~i~V~eHtf~prEYL~~~Le~rf~r  715 (1125)
T KOG1917|consen  636 NASNKKKKSQKSPKGEPERDKPGHESYRKNRKSLTMLDKLHTALTELCFALNYVPPICVWEHTFAPREYLRQHLEGRFKR  715 (1125)
T ss_pred             HHHHhhccCCCCCCCCCcCCCCccccccchhhhhccHHHHHHHHHHHHHHhccCCceeEEeecccHHHHHHHHHHHHHHH
Confidence            56778888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhccCCCCCcccCcHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHh
Q psy17467        466 ALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLR  545 (730)
Q Consensus       466 ~~~~~~~~~~~~~~~~rps~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~ll~~tq~~d~~~~~~~~~~~~~~~~~~~~~  545 (730)
                      .|++|.+||++|++|+||||||++|||||+|+|++||||+||+||+||++||||||++||||++                
T Consensus       716 ~~vgm~~~nqtt~ei~kPSeLla~vrayM~vlq~leq~v~~Ditrvir~~LLqQtq~lDs~gEq----------------  779 (1125)
T KOG1917|consen  716 RLVGMLMYNQTTQEIAKPSELLASVRAYMGVLQSLEQYVSIDITRVIRNILLQQTQSLDSHGEQ----------------  779 (1125)
T ss_pred             HHHHHHHcCCccccccChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccCCCch----------------
Confidence            9999999999999999999999999999999999999999999999999999999999999999                


Q ss_pred             hhhhhhhhhhcccchhheeeeccceeccchhhhhhhhhhhhhcccccCccchhhHHHHHHHHHHHhccCCCceEeecccc
Q psy17467        546 RVSETQVKSLNLLNFLRVYTVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLRRVSAGNICFSLNQR  625 (730)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~y~~wy~e~l~~~~~~~~~~~s~~~~  625 (730)
                                                                        |||++|||||+|+|||+||+|||+|||++|
T Consensus       780 --------------------------------------------------Ti~~lytnWYlE~LLR~vSsg~Iv~sp~~k  809 (1125)
T KOG1917|consen  780 --------------------------------------------------TIAALYTNWYLEVLLRRVSSGHIVFSPAMK  809 (1125)
T ss_pred             --------------------------------------------------hHHHHHHHHHHHHHHHHhcCCcEEechHHH
Confidence                                                              888999999999999999999999999999


Q ss_pred             cccccCCCCCccccccccCCHHHHHHHHHhHcchhhHHHHHHHHH----HhhchhhhhhcCCCCcccc
Q psy17467        626 AFVSLTAEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNELSLK----AFNAAHEMVHNQSDVNFPR  689 (730)
Q Consensus       626 ~f~s~~~~~~~~~~ae~~~d~~el~al~~l~gpyg~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~  689 (730)
                      +|||++++|.++|+||+|||++|||||+||+||||||||+|+|||    .-||.-.++..|-|+...-
T Consensus       810 afvs~~~e~~~~f~aee~SDl~ElrAlvel~GpYGvk~Lse~LmwHvasqV~elkklv~tn~d~L~~~  877 (1125)
T KOG1917|consen  810 AFVSLPPEGELGFNAEEYSDLSELRALVELLGPYGVKFLSEMLMWHVASQVNELKKLVVTNKDVLEQA  877 (1125)
T ss_pred             hhccCCccccCCCChhhcCCHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            999999999999999999999999999999999999999999999    8899999999999987643

>PF09735 Nckap1: Membrane-associated apoptosis protein; InterPro: IPR019137 Nck-associated protein 1 is part of lamellipodial complex that controls Rac-dependent actin remodeling

Probab=100.00  E-value=8.7e-68  Score=633.58  Aligned_cols=244  Identities=57%  Similarity=0.886  Sum_probs=194.0

Q ss_pred             HHHHHhhhccCCccccccccCCCCcccccchhhhcchHHHHHHHHHHHHhhcccceeEEEeeeechHHHHHHhHHHHHHH
Q psy17467        386 QIASRRKKDKNNKKILNEIIKPGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESRFSR  465 (730)
Q Consensus       386 ~~~~kkkk~~k~kK~~~~~~~pg~es~~~~~~~~~~~d~~~~~l~~lc~~~~~~~~i~v~~~~f~p~eyl~~~l~~~f~~  465 (730)
                      +++++|++|+++||+.+++.+||.||+|++|+++|+||++|++|+|||+|||++++|+||||+|+|||||++|||++|++
T Consensus       635 ~~~~~k~~k~~~k~~~~~~~~PG~ES~r~~r~~~t~ld~l~~~L~eLc~aln~~~~I~V~dh~f~PrEyL~~~Le~~f~~  714 (1116)
T PF09735_consen  635 QARNKKKKKQKNKKGEPERVKPGAESYRKNRENLTMLDKLHQALTELCSALNHFPSIVVFDHVFVPREYLREHLENRFRR  714 (1116)
T ss_dssp             HHTT-----------------TTGGG--S-TTS--HHHHHHHHHHHHHHHHTS-S-EEETTEEE-HHHHHHHHHHHHHHH
T ss_pred             HHHhhhcccccCcCCCCCCCCCchhccCCCchhhhhHHHHHHHHHHHHHHHhcCCCeEEEeeEeeHHHHHHHHHHHHHHH
Confidence            45556666678889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhccCCCCCcccCcHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHh
Q psy17467        466 ALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLR  545 (730)
Q Consensus       466 ~~~~~~~~~~~~~~~~rps~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~ll~~tq~~d~~~~~~~~~~~~~~~~~~~~~  545 (730)
                      +|++|++||+++++|+||||||++|++||+|||++||||+||+|++||+||||||||.|+||++                
T Consensus       715 ~l~~~~~~~~~~~~i~RPS~ll~~l~a~m~vlq~le~~v~iDvt~~~~~vLLqqtq~~d~~g~~----------------  778 (1116)
T PF09735_consen  715 ALVSMVMYNPDDQEIARPSELLSSLRAYMSVLQSLENYVSIDVTRLFRNVLLQQTQPVDSHGEK----------------  778 (1116)
T ss_dssp             HHHHHT--BTTTTB---HHHHHHHHHHHHHHHHHGGGTSS--HHHHHHHHHHHTTSSB-TTS-B----------------
T ss_pred             HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCcccCCcc----------------
Confidence            9999999999999999999999999999999999999999999999999999999999999999                


Q ss_pred             hhhhhhhhhhcccchhheeeeccceeccchhhhhhhhhhhhhcccccCccchhhHHHHHHHHHHHhccCCCceEeecccc
Q psy17467        546 RVSETQVKSLNLLNFLRVYTVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLRRVSAGNICFSLNQR  625 (730)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~y~~wy~e~l~~~~~~~~~~~s~~~~  625 (730)
                                                                        |+|++||+||+|+|+|++++|||||||+++
T Consensus       779 --------------------------------------------------ti~~~yt~WYle~llr~~s~~~ivfSp~~~  808 (1116)
T PF09735_consen  779 --------------------------------------------------TITTLYTNWYLENLLRDASNGGIVFSPSRK  808 (1116)
T ss_dssp             ---------------------------------------------------HHHHHHHHHHHTHHHHHHTTSEEEETTTT
T ss_pred             --------------------------------------------------cHHHHHHHHHHHHHHHhccCCcEEeecHHH
Confidence                                                              899999999999999999999999999999


Q ss_pred             cccccCCCCCccccccccCCHHHHHHHHHhHcchhhHHHHHHHHH----HhhchhhhhhcCCCCccccccceeeccccc
Q psy17467        626 AFVSLTAEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNELSLK----AFNAAHEMVHNQSDVNFPRLGQMIMDYEVP  700 (730)
Q Consensus       626 ~f~s~~~~~~~~~~ae~~~d~~el~al~~l~gpyg~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  700 (730)
                      ||||.+++ +.+|+||+|||++||||||+||||||||+||++|+|    ..+|+.+++..|.|++..-.    -.|+.|
T Consensus       809 ~FvS~~~~-~~~f~ae~ytD~~ELrAL~~LiGpyGvk~l~~~L~~~va~~v~elkk~v~~N~d~L~~l~----~~~~~~  882 (1116)
T PF09735_consen  809 CFVSSRPE-QGPFNAEEYTDLNELRALVELIGPYGVKFLDENLMWHVASQVNELKKLVRQNRDVLEQLR----SNFDKP  882 (1116)
T ss_dssp             EEEE-SSS----S-THHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH----H-TT-H
T ss_pred             hhhCCCCc-cCCcChHHcCCHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HhcCCH
Confidence            99999987 678999999999999999999999999999999999    88999999999999887433    346666

It associates preferentially with the first SH3 domain of Nck and is a component of the WAVE2 complex composed of ABI1, CYFIP1/SRA1, NCKAP1/NAP1 and WASF2/WAVE2. It is also a component of the WAVE1 complex composed of ABI2, CYFIP2, C3orf10/HSPC300, NCKAP1 and WASF1/WAVE1. CYFIP2 binds to activated RAC1 which causes the complex to dissociate, releasing activated WASF1. The complex can also be activated by NCK1. Expression of this protein was found to be markedly reduced in patients with Alzheimer's disease [].; PDB: 3P8C_B.

>KOG0084|consensus

Probab=100.00  E-value=1.2e-33  Score=279.66  Aligned_cols=173  Identities=50%  Similarity=0.864  Sum_probs=159.4

Q ss_pred             CCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhcccc
Q psy17467          2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAH   81 (730)
Q Consensus         2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~AD   81 (730)
                      ..++|++||+++|++|||||+|+.||.++.|...+..|+|+|+..+++.++|+.++|+||||+|+++|+++...|||+|+
T Consensus         4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ah   83 (205)
T KOG0084|consen    4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAH   83 (205)
T ss_pred             cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467         82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV  161 (730)
Q Consensus        82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~  161 (730)
                      +||+|||+|+.+||+++..|+.++.++..                               ++.|.++||||+|+.     
T Consensus        84 Gii~vyDiT~~~SF~~v~~Wi~Ei~~~~~-------------------------------~~v~~lLVGNK~Dl~-----  127 (205)
T KOG0084|consen   84 GIIFVYDITKQESFNNVKRWIQEIDRYAS-------------------------------ENVPKLLVGNKCDLT-----  127 (205)
T ss_pred             eEEEEEEcccHHHhhhHHHHHHHhhhhcc-------------------------------CCCCeEEEeeccccH-----
Confidence            99999999999999999999999998763                               456667777777775     


Q ss_pred             HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCe-EEEEecCCCCChHH
Q psy17467        162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMY-YLETSAKASDNVEK  240 (730)
Q Consensus       162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~-fvEtSAktG~GVee  240 (730)
                                                                   ..+.|+.++++.++..++++ |+|+|||++.||++
T Consensus       128 ---------------------------------------------~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~  162 (205)
T KOG0084|consen  128 ---------------------------------------------EKRVVSTEEAQEFADELGIPIFLETSAKDSTNVED  162 (205)
T ss_pred             ---------------------------------------------hheecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence                                                         34789999999999999998 99999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy17467        241 LFMQIAAELMEKLAE  255 (730)
Q Consensus       241 LFe~Li~~l~e~~~~  255 (730)
                      +|..+...+.++...
T Consensus       163 ~F~~la~~lk~~~~~  177 (205)
T KOG0084|consen  163 AFLTLAKELKQRKGL  177 (205)
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999988655443

>KOG0078|consensus

Probab=100.00  E-value=7.6e-32  Score=269.69  Aligned_cols=173  Identities=46%  Similarity=0.877  Sum_probs=160.3

Q ss_pred             CCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhcccc
Q psy17467          2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAH   81 (730)
Q Consensus         2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~AD   81 (730)
                      +++++++||+++|+++||||+|+.||..+.|...+..|+|+++..+++..++..+.+++|||+|+++|..+...||+.|+
T Consensus         7 ~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~   86 (207)
T KOG0078|consen    7 EDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAM   86 (207)
T ss_pred             CCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467         82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV  161 (730)
Q Consensus        82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~  161 (730)
                      +++||||+++..||+++..|+..|.++.+                               +++|.+|||||+|+.     
T Consensus        87 gi~LvyDitne~Sfeni~~W~~~I~e~a~-------------------------------~~v~~~LvGNK~D~~-----  130 (207)
T KOG0078|consen   87 GILLVYDITNEKSFENIRNWIKNIDEHAS-------------------------------DDVVKILVGNKCDLE-----  130 (207)
T ss_pred             eeEEEEEccchHHHHHHHHHHHHHHhhCC-------------------------------CCCcEEEeecccccc-----
Confidence            99999999999999999999999998763                               456666777777775     


Q ss_pred             HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHH
Q psy17467        162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL  241 (730)
Q Consensus       162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeL  241 (730)
                                                                   .+|+|+.+.++++|..+|+.|+|||||+|.||+++
T Consensus       131 ---------------------------------------------~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ea  165 (207)
T KOG0078|consen  131 ---------------------------------------------EKRQVSKERGEALAREYGIKFFETSAKTNFNIEEA  165 (207)
T ss_pred             ---------------------------------------------ccccccHHHHHHHHHHhCCeEEEccccCCCCHHHH
Confidence                                                         24899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy17467        242 FMQIAAELMEKLAE  255 (730)
Q Consensus       242 Fe~Li~~l~e~~~~  255 (730)
                      |..+++.++.+...
T Consensus       166 F~~La~~i~~k~~~  179 (207)
T KOG0078|consen  166 FLSLARDILQKLED  179 (207)
T ss_pred             HHHHHHHHHhhcch
Confidence            99999999875444

>KOG0098|consensus

Probab=99.98  E-value=1e-31  Score=263.48  Aligned_cols=175  Identities=45%  Similarity=0.819  Sum_probs=161.2

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI   83 (730)
                      +.+.+|++++|+.|||||+|+.||+...|.+.+..|+|+++..+++.+++++++|++|||+|++.|+++...||++|.++
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      |||||+++++||..|..|+++++++..                               +|..++|+|||+||.       
T Consensus        83 lLVydit~r~sF~hL~~wL~D~rq~~~-------------------------------~NmvImLiGNKsDL~-------  124 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTSWLEDARQHSN-------------------------------ENMVIMLIGNKSDLE-------  124 (216)
T ss_pred             EEEEEccchhhHHHHHHHHHHHHHhcC-------------------------------CCcEEEEEcchhhhh-------
Confidence            999999999999999999999998753                               566667777777774       


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM  243 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe  243 (730)
                                                                 ..|.|+.||++.||+++|..|+|+||++++||+++|.
T Consensus       125 -------------------------------------------~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~  161 (216)
T KOG0098|consen  125 -------------------------------------------ARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI  161 (216)
T ss_pred             -------------------------------------------ccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence                                                       3579999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q psy17467        244 QIAAELMEKLAEKLTI  259 (730)
Q Consensus       244 ~Li~~l~e~~~~~~~~  259 (730)
                      .....+....+.....
T Consensus       162 nta~~Iy~~~q~g~~~  177 (216)
T KOG0098|consen  162 NTAKEIYRKIQDGVFD  177 (216)
T ss_pred             HHHHHHHHHHHhcccc
Confidence            9999998877664433

>KOG0094|consensus

Probab=99.97  E-value=5.2e-31  Score=260.31  Aligned_cols=167  Identities=40%  Similarity=0.669  Sum_probs=151.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      ..+||++||+.+||||||++||+.+.|..+|.+|+|+|+.++++.+.|..+.|++|||+|+++|+++.+.|+|+++++|+
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi  100 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI  100 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      |||++|..||++...|++++.......                              ++-|+|||||.||.         
T Consensus       101 VyDit~~~Sfe~t~kWi~dv~~e~gs~------------------------------~viI~LVGnKtDL~---------  141 (221)
T KOG0094|consen  101 VYDITDRNSFENTSKWIEDVRRERGSD------------------------------DVIIFLVGNKTDLS---------  141 (221)
T ss_pred             EEeccccchHHHHHHHHHHHHhccCCC------------------------------ceEEEEEccccccc---------
Confidence            999999999999999999998765322                              23356677777775         


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L  245 (730)
                                                               .+|+++.++++..|+++++.|+|+||++|.||.++|..|
T Consensus       142 -----------------------------------------dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrI  180 (221)
T KOG0094|consen  142 -----------------------------------------DKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRI  180 (221)
T ss_pred             -----------------------------------------chhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHH
Confidence                                                     347899999999999999999999999999999999998


Q ss_pred             HHHHHHH
Q psy17467        246 AAELMEK  252 (730)
Q Consensus       246 i~~l~e~  252 (730)
                      ..++...
T Consensus       181 aa~l~~~  187 (221)
T KOG0094|consen  181 AAALPGM  187 (221)
T ss_pred             HHhccCc
Confidence            8877554

>cd04121 Rab40 Rab40 subfamily

Probab=99.97  E-value=2.1e-30  Score=258.94  Aligned_cols=166  Identities=34%  Similarity=0.660  Sum_probs=151.4

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      ++++.+||+++|++|||||||+.+|.++.+...+.++++.++....+.+++..+.+++|||+|++++..++..++++||+
T Consensus         2 ~~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~   81 (189)
T cd04121           2 AYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQG   81 (189)
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence            46788999999999999999999999999988888899988888889999999999999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +|||||++++.||+++..|++++....                                ++.|++|||||.|+.+     
T Consensus        82 illVfD~t~~~Sf~~~~~w~~~i~~~~--------------------------------~~~piilVGNK~DL~~-----  124 (189)
T cd04121          82 IILVYDITNRWSFDGIDRWIKEIDEHA--------------------------------PGVPKILVGNRLHLAF-----  124 (189)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEECccchh-----
Confidence            999999999999999999999996532                                4678888888888852     


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF  242 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF  242 (730)
                                                                   .+.++.++++.+|+..++.|+||||++|.||+++|
T Consensus       125 ---------------------------------------------~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F  159 (189)
T cd04121         125 ---------------------------------------------KRQVATEQAQAYAERNGMTFFEVSPLCNFNITESF  159 (189)
T ss_pred             ---------------------------------------------ccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence                                                         25688899999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy17467        243 MQIAAELM  250 (730)
Q Consensus       243 e~Li~~l~  250 (730)
                      +++++.+.
T Consensus       160 ~~l~~~i~  167 (189)
T cd04121         160 TELARIVL  167 (189)
T ss_pred             HHHHHHHH
Confidence            99998774

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0092|consensus

Probab=99.97  E-value=7.4e-31  Score=258.95  Aligned_cols=170  Identities=42%  Similarity=0.719  Sum_probs=154.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      ...+||++||+.+||||||+-||..+.|.....||+|..|..+++.+++..+++.||||+|+++|.++.+.|||+|+++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            45699999999999999999999999999988899999999999999999999999999999999999999999999999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      +|||+|+.+||+.++.|+.++.+..+                               +++.+.|||||+||.        
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~-------------------------------~~~vialvGNK~DL~--------  123 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQAS-------------------------------PNIVIALVGNKADLL--------  123 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCC-------------------------------CCeEEEEecchhhhh--------
Confidence            99999999999999999999988653                               445556677777774        


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~  244 (730)
                                                                ..|+|..+++..+|...|+.|+|+|||||.||+++|..
T Consensus       124 ------------------------------------------~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~  161 (200)
T KOG0092|consen  124 ------------------------------------------ERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQA  161 (200)
T ss_pred             ------------------------------------------hcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHH
Confidence                                                      23899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy17467        245 IAAELMEKLAE  255 (730)
Q Consensus       245 Li~~l~e~~~~  255 (730)
                      |.+.+......
T Consensus       162 Ia~~lp~~~~~  172 (200)
T KOG0092|consen  162 IAEKLPCSDPQ  172 (200)
T ss_pred             HHHhccCcccc
Confidence            99998654443

>KOG0394|consensus

Probab=99.97  E-value=7.3e-31  Score=257.09  Aligned_cols=177  Identities=34%  Similarity=0.625  Sum_probs=159.2

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI   83 (730)
                      +..++||+++|++|||||||+++|.+.+|...|..|+|.++..+.+.++++.+.++||||+|+++|.++...+||+||++
T Consensus         6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC   85 (210)
T KOG0394|consen    6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC   85 (210)
T ss_pred             cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      ++|||++++.||++|..|.+++..+.....|                           ...|.||+|||.|+...     
T Consensus        86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~P---------------------------e~FPFVilGNKiD~~~~-----  133 (210)
T KOG0394|consen   86 VLVYDVNNPKSFENLENWRKEFLIQASPQDP---------------------------ETFPFVILGNKIDVDGG-----  133 (210)
T ss_pred             EEEeecCChhhhccHHHHHHHHHHhcCCCCC---------------------------CcccEEEEcccccCCCC-----
Confidence            9999999999999999999999887643322                           45677788887777531     


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC-CeEEEEecCCCCChHHHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYLETSAKASDNVEKLF  242 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg-~~fvEtSAktG~GVeeLF  242 (730)
                                                                 ..|+|+.+.++.||+..| ++|+|+|||.+.||+++|
T Consensus       134 -------------------------------------------~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AF  170 (210)
T KOG0394|consen  134 -------------------------------------------KSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAF  170 (210)
T ss_pred             -------------------------------------------ccceeeHHHHHHHHHhcCCceeEEecccccccHHHHH
Confidence                                                       238999999999999885 799999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy17467        243 MQIAAELMEKLAE  255 (730)
Q Consensus       243 e~Li~~l~e~~~~  255 (730)
                      +.+.+.++.....
T Consensus       171 e~ia~~aL~~E~~  183 (210)
T KOG0394|consen  171 EEIARRALANEDR  183 (210)
T ss_pred             HHHHHHHHhccch
Confidence            9999999876543

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.97  E-value=4.2e-30  Score=255.03  Aligned_cols=175  Identities=29%  Similarity=0.509  Sum_probs=150.0

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI   83 (730)
                      ++..+||+++|++|||||||+++|.++.|...+.||++.++ .+.+.+++..+.+++|||+|+++|..++..++++||++
T Consensus         2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~   80 (182)
T cd04172           2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   80 (182)
T ss_pred             CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence            56779999999999999999999999999999999998554 56788899999999999999999999999999999999


Q ss_pred             EEEeecCCCCchhhh-HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         84 ILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        84 ILVyDvtd~eSfe~L-~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      |+|||++++.||+++ ..|++++.+..                                ++.|++|||||.||.++....
T Consensus        81 ilvyDit~~~Sf~~~~~~w~~~i~~~~--------------------------------~~~piilVgNK~DL~~~~~~~  128 (182)
T cd04172          81 LICFDISRPETLDSVLKKWKGEIQEFC--------------------------------PNTKMLLVGCKSDLRTDLTTL  128 (182)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC--------------------------------CCCCEEEEeEChhhhcChhhH
Confidence            999999999999998 78999987643                                567899999999996432110


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCC-hHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDN-VEK  240 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~G-Vee  240 (730)
                                                            .+-.+...+.|+.++++++|+.+|+ .|+||||++|.| |++
T Consensus       129 --------------------------------------~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~  170 (182)
T cd04172         129 --------------------------------------VELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRD  170 (182)
T ss_pred             --------------------------------------HHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHH
Confidence                                                  0001112357999999999999996 899999999998 999


Q ss_pred             HHHHHHHHH
Q psy17467        241 LFMQIAAEL  249 (730)
Q Consensus       241 LFe~Li~~l  249 (730)
                      +|+.+++.+
T Consensus       171 ~F~~~~~~~  179 (182)
T cd04172         171 IFHVATLAC  179 (182)
T ss_pred             HHHHHHHHH
Confidence            999999865

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0080|consensus

Probab=99.97  E-value=1.8e-30  Score=249.30  Aligned_cols=168  Identities=43%  Similarity=0.816  Sum_probs=151.5

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      .++.++||+++|++|||||||+-||+.+.|.+....|+|+++..+.+.++|+.+++-||||+|+++|+.+.+.||+.|.+
T Consensus         7 ~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG   86 (209)
T KOG0080|consen    7 GYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG   86 (209)
T ss_pred             CcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence            35788999999999999999999999999999987889999999999999999999999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +|+|||+|.+++|..+..|+.++.-++.                              ++++.                 
T Consensus        87 iIlVYDVT~Rdtf~kLd~W~~Eld~Yst------------------------------n~dii-----------------  119 (209)
T KOG0080|consen   87 IILVYDVTSRDTFVKLDIWLKELDLYST------------------------------NPDII-----------------  119 (209)
T ss_pred             eEEEEEccchhhHHhHHHHHHHHHhhcC------------------------------CccHh-----------------
Confidence            9999999999999999999999976542                              22333                 


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCcccccccccccc-CCCCChHHHHHHHHhcCCeEEEEecCCCCChHHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDRE-DREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL  241 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~-~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeL  241 (730)
                                                        .|+||||+|.+ +|.|+.+++.++|+.+++.|+|||||+.+||+..
T Consensus       120 ----------------------------------kmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~  165 (209)
T KOG0080|consen  120 ----------------------------------KMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCC  165 (209)
T ss_pred             ----------------------------------HhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence                                              34555666654 6899999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy17467        242 FMQIAAELME  251 (730)
Q Consensus       242 Fe~Li~~l~e  251 (730)
                      |+.++..+++
T Consensus       166 FeelveKIi~  175 (209)
T KOG0080|consen  166 FEELVEKIIE  175 (209)
T ss_pred             HHHHHHHHhc
Confidence            9999988854

>KOG0095|consensus

Probab=99.97  E-value=4.8e-30  Score=243.68  Aligned_cols=173  Identities=76%  Similarity=1.271  Sum_probs=155.1

Q ss_pred             CCCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccc
Q psy17467          1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSA   80 (730)
Q Consensus         1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~A   80 (730)
                      ||+|++++||++||..|||||+|++||+.+-|++....|+|+++..++++++|.+++++||||+|+++|+++...||+.|
T Consensus         1 medykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsa   80 (213)
T KOG0095|consen    1 MEDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSA   80 (213)
T ss_pred             CcccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhH
Q psy17467         81 HALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEH  160 (730)
Q Consensus        81 DaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~  160 (730)
                      +++|+|||++...||+.+.+|+.+|.++...+...                               ++||||.|+.+   
T Consensus        81 halilvydiscqpsfdclpewlreie~yan~kvlk-------------------------------ilvgnk~d~~d---  126 (213)
T KOG0095|consen   81 HALILVYDISCQPSFDCLPEWLREIEQYANNKVLK-------------------------------ILVGNKIDLAD---  126 (213)
T ss_pred             ceEEEEEecccCcchhhhHHHHHHHHHHhhcceEE-------------------------------Eeeccccchhh---
Confidence            99999999999999999999999999987544333                               33445555432   


Q ss_pred             HHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHH
Q psy17467        161 VLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEK  240 (730)
Q Consensus       161 ~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVee  240 (730)
                                                                     .|+|+...++++++....-|.|+||+...||+.
T Consensus       127 -----------------------------------------------rrevp~qigeefs~~qdmyfletsakea~nve~  159 (213)
T KOG0095|consen  127 -----------------------------------------------RREVPQQIGEEFSEAQDMYFLETSAKEADNVEK  159 (213)
T ss_pred             -----------------------------------------------hhhhhHHHHHHHHHhhhhhhhhhcccchhhHHH
Confidence                                                           368899999999999888999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy17467        241 LFMQIAAELMEKLA  254 (730)
Q Consensus       241 LFe~Li~~l~e~~~  254 (730)
                      +|..+...+....+
T Consensus       160 lf~~~a~rli~~ar  173 (213)
T KOG0095|consen  160 LFLDLACRLISEAR  173 (213)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99998877755433

>KOG0087|consensus

Probab=99.97  E-value=1.1e-29  Score=253.69  Aligned_cols=177  Identities=43%  Similarity=0.786  Sum_probs=163.5

Q ss_pred             CCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhcccc
Q psy17467          2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAH   81 (730)
Q Consensus         2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~AD   81 (730)
                      ++++|++||+++|+++||||-|+.||+.++|.....+|+|+++...++.++++.+..+||||+|+++|+.+...||+.|.
T Consensus         9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv   88 (222)
T KOG0087|consen    9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV   88 (222)
T ss_pred             cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467         82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV  161 (730)
Q Consensus        82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~  161 (730)
                      ++++|||+|.+.+|+++.+|+.+++.+.                               +++++++|||||+||.+    
T Consensus        89 GAllVYDITr~~Tfenv~rWL~ELRdha-------------------------------d~nivimLvGNK~DL~~----  133 (222)
T KOG0087|consen   89 GALLVYDITRRQTFENVERWLKELRDHA-------------------------------DSNIVIMLVGNKSDLNH----  133 (222)
T ss_pred             eeEEEEechhHHHHHHHHHHHHHHHhcC-------------------------------CCCeEEEEeecchhhhh----
Confidence            9999999999999999999999998875                               46777788888888852    


Q ss_pred             HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHH
Q psy17467        162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL  241 (730)
Q Consensus       162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeL  241 (730)
                                                                    .|.|+.++++.+|+..+..|+|+||..+.||+++
T Consensus       134 ----------------------------------------------lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~a  167 (222)
T KOG0087|consen  134 ----------------------------------------------LRAVPTEDGKAFAEKEGLFFLETSALDATNVEKA  167 (222)
T ss_pred             ----------------------------------------------ccccchhhhHhHHHhcCceEEEecccccccHHHH
Confidence                                                          3789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhh
Q psy17467        242 FMQIAAELMEKLAEKLTI  259 (730)
Q Consensus       242 Fe~Li~~l~e~~~~~~~~  259 (730)
                      |+.++..+.....++...
T Consensus       168 F~~~l~~I~~~vs~k~~~  185 (222)
T KOG0087|consen  168 FERVLTEIYKIVSKKQLD  185 (222)
T ss_pred             HHHHHHHHHHHHHHHhhh
Confidence            999999998776655433

>cd04131 Rnd Rnd subfamily

Probab=99.97  E-value=2.2e-29  Score=248.52  Aligned_cols=172  Identities=30%  Similarity=0.516  Sum_probs=146.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+++|++|||||||+++|.++.|+..+.||++.++ .+.+.+++..+.+++|||+|++.+..++..++++||++|+||
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            7999999999999999999999999999999998555 567888999999999999999999999999999999999999


Q ss_pred             ecCCCCchhhh-HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         88 DISCQPTFDCL-TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        88 Dvtd~eSfe~L-~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      |++++.||+++ ..|++++.+..                                ++.|++|||||.||.++....    
T Consensus        81 dit~~~Sf~~~~~~w~~~i~~~~--------------------------------~~~~iilVgnK~DL~~~~~~~----  124 (178)
T cd04131          81 DISRPETLDSVLKKWRGEIQEFC--------------------------------PNTKVLLVGCKTDLRTDLSTL----  124 (178)
T ss_pred             ECCChhhHHHHHHHHHHHHHHHC--------------------------------CCCCEEEEEEChhhhcChhHH----
Confidence            99999999996 78999987643                                567899999999996421100    


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCC-hHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDN-VEKLFMQ  244 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~G-VeeLFe~  244 (730)
                                                        .+-.+...+.++.++++++|+.+|+ .|+||||++|+| |+++|..
T Consensus       125 ----------------------------------~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~  170 (178)
T cd04131         125 ----------------------------------MELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHV  170 (178)
T ss_pred             ----------------------------------HHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHH
Confidence                                              0111112356899999999999997 899999999995 9999999


Q ss_pred             HHHHHH
Q psy17467        245 IAAELM  250 (730)
Q Consensus       245 Li~~l~  250 (730)
                      +++..+
T Consensus       171 ~~~~~~  176 (178)
T cd04131         171 ATMACL  176 (178)
T ss_pred             HHHHHh
Confidence            998543

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0086|consensus

Probab=99.96  E-value=1.1e-29  Score=241.95  Aligned_cols=175  Identities=42%  Similarity=0.793  Sum_probs=162.2

Q ss_pred             CCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhcccc
Q psy17467          2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAH   81 (730)
Q Consensus         2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~AD   81 (730)
                      |.|++++|++++|+.|.|||+|+.+|..++|......|+|+++.++.+.+.++.++++||||+|+++|+++.+.||+.|-
T Consensus         4 EtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAA   83 (214)
T KOG0086|consen    4 ETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA   83 (214)
T ss_pred             hhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcccc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467         82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV  161 (730)
Q Consensus        82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~  161 (730)
                      +.++|||+++++||+.+..|+.+++...                               .+++.|+++|||.||.     
T Consensus        84 GAlLVYD~TsrdsfnaLtnWL~DaR~lA-------------------------------s~nIvviL~GnKkDL~-----  127 (214)
T KOG0086|consen   84 GALLVYDITSRDSFNALTNWLTDARTLA-------------------------------SPNIVVILCGNKKDLD-----  127 (214)
T ss_pred             ceEEEEeccchhhHHHHHHHHHHHHhhC-------------------------------CCcEEEEEeCChhhcC-----
Confidence            9999999999999999999999997654                               3677778888888886     


Q ss_pred             HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHH
Q psy17467        162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL  241 (730)
Q Consensus       162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeL  241 (730)
                                                                   .+|+|+..++.++|++..+.|.|+||+||+||++.
T Consensus       128 ---------------------------------------------~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEa  162 (214)
T KOG0086|consen  128 ---------------------------------------------PEREVTFLEASRFAQENELMFLETSALTGENVEEA  162 (214)
T ss_pred             ---------------------------------------------hhhhhhHHHHHhhhcccceeeeeecccccccHHHH
Confidence                                                         34789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy17467        242 FMQIAAELMEKLAEKL  257 (730)
Q Consensus       242 Fe~Li~~l~e~~~~~~  257 (730)
                      |-...+.++.+....+
T Consensus       163 Fl~c~~tIl~kIE~GE  178 (214)
T KOG0086|consen  163 FLKCARTILNKIESGE  178 (214)
T ss_pred             HHHHHHHHHHHHhhcC
Confidence            9999999987766543

>KOG0079|consensus

Probab=99.96  E-value=7.5e-30  Score=242.13  Aligned_cols=171  Identities=43%  Similarity=0.763  Sum_probs=154.2

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      ++++++|.+|+|++|||||||+.+|..+.|...|..|+|+++..++++++|..+.++||||+|+++|+.+...|++..++
T Consensus         4 ~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthg   83 (198)
T KOG0079|consen    4 DYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHG   83 (198)
T ss_pred             cHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCce
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +++|||+|+.+||.++.+|+++|...++                                ..|-|+||||.|+.      
T Consensus        84 v~vVYDVTn~ESF~Nv~rWLeei~~ncd--------------------------------sv~~vLVGNK~d~~------  125 (198)
T KOG0079|consen   84 VIVVYDVTNGESFNNVKRWLEEIRNNCD--------------------------------SVPKVLVGNKNDDP------  125 (198)
T ss_pred             EEEEEECcchhhhHhHHHHHHHHHhcCc--------------------------------cccceecccCCCCc------
Confidence            9999999999999999999999987662                                23334444444442      


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF  242 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF  242 (730)
                                                                  +.|.|..++++.+|...|+.+||+|||+++|++.+|
T Consensus       126 --------------------------------------------~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF  161 (198)
T KOG0079|consen  126 --------------------------------------------ERRVVDTEDARAFALQMGIELFETSAKENENVEAMF  161 (198)
T ss_pred             --------------------------------------------cceeeehHHHHHHHHhcCchheehhhhhcccchHHH
Confidence                                                        247889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy17467        243 MQIAAELMEKLAE  255 (730)
Q Consensus       243 e~Li~~l~e~~~~  255 (730)
                      .-|.+.++....+
T Consensus       162 ~cit~qvl~~k~r  174 (198)
T KOG0079|consen  162 HCITKQVLQAKLR  174 (198)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999877633

>cd04120 Rab12 Rab12 subfamily

Probab=99.96  E-value=9.4e-29  Score=249.75  Aligned_cols=163  Identities=47%  Similarity=0.823  Sum_probs=146.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +.|+++|++|||||||++||.++.|...+.+|+|.++..+.+.+++..+.+++|||+|++++..++..|+++||++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            46999999999999999999999999999999999999899999999999999999999999999999999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |+++++||+++..|+..+.+..                               .++.|+++||||.|+.+          
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~-------------------------------~~~~piilVgNK~DL~~----------  119 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYA-------------------------------SEDAELLLVGNKLDCET----------  119 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhC-------------------------------CCCCcEEEEEECccccc----------
Confidence            9999999999999998876532                               14578888888888742          


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc-CCeEEEEecCCCCChHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH-DMYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l-g~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                                              .+.++.++++++++.+ ++.|+||||++|.||+++|++++
T Consensus       120 ----------------------------------------~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~  159 (202)
T cd04120         120 ----------------------------------------DREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLV  159 (202)
T ss_pred             ----------------------------------------ccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence                                                    3568888999999886 88999999999999999999999


Q ss_pred             HHHHH
Q psy17467        247 AELME  251 (730)
Q Consensus       247 ~~l~e  251 (730)
                      +.+..
T Consensus       160 ~~~~~  164 (202)
T cd04120         160 DDILK  164 (202)
T ss_pred             HHHHH
Confidence            88754

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0091|consensus

Probab=99.96  E-value=1.5e-29  Score=243.52  Aligned_cols=186  Identities=38%  Similarity=0.692  Sum_probs=166.3

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEe-CCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEI-NNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~v-dg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      ..|.++++++|++-||||||+.+|+.++|..-..||+|+|++.+.+++ +|..+++++|||+|+++|+++.+.||+++-+
T Consensus         5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg   84 (213)
T KOG0091|consen    5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG   84 (213)
T ss_pred             eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence            457899999999999999999999999999988999999999999988 5788999999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCc-eEEeccCCCcchhhHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALA-TALASDKTDLDEDEHV  161 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~P-VVLVGNK~DL~~~e~~  161 (730)
                      +++|||++|++||+.+..|+++...+..                              .|..+ ..|||+|+||.     
T Consensus        85 vllvyditnr~sfehv~~w~~ea~m~~q------------------------------~P~k~VFlLVGhKsDL~-----  129 (213)
T KOG0091|consen   85 VLLVYDITNRESFEHVENWVKEAAMATQ------------------------------GPDKVVFLLVGHKSDLQ-----  129 (213)
T ss_pred             eEEEEeccchhhHHHHHHHHHHHHHhcC------------------------------CCCeeEEEEeccccchh-----
Confidence            9999999999999999999999876543                              13333 35677877774     


Q ss_pred             HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHH
Q psy17467        162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL  241 (730)
Q Consensus       162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeL  241 (730)
                                                                   .+|+|+.||++++|..+|+.|+|+||++|.||++.
T Consensus       130 ---------------------------------------------SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA  164 (213)
T KOG0091|consen  130 ---------------------------------------------SQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA  164 (213)
T ss_pred             ---------------------------------------------hhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence                                                         35899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccccccccch
Q psy17467        242 FMQIAAELMEKLAEKLTIMHDRGVGMLT  269 (730)
Q Consensus       242 Fe~Li~~l~e~~~~~~~~~~~~~~~~l~  269 (730)
                      |..+.+.+..+..+........|.+..+
T Consensus       165 F~mlaqeIf~~i~qGeik~edgw~gvKS  192 (213)
T KOG0091|consen  165 FDMLAQEIFQAIQQGEIKLEDGWGGVKS  192 (213)
T ss_pred             HHHHHHHHHHHHhcCceeeeeccccccc
Confidence            9999999999988877777777776553

>cd04133 Rop_like Rop subfamily

Probab=99.96  E-value=5.4e-29  Score=246.00  Aligned_cols=169  Identities=30%  Similarity=0.563  Sum_probs=145.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+++|+++||||||+.+|.++.|...+.||++..+ ...+.+++..+.+++|||+|++++..++..++++||++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            7999999999999999999999999999999998655 556788999999999999999999999999999999999999


Q ss_pred             ecCCCCchhhh-HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         88 DISCQPTFDCL-TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        88 Dvtd~eSfe~L-~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      |+++++||+++ ..|+.++.+..                                ++.|++|||||.||.+....+    
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~--------------------------------~~~piilvgnK~Dl~~~~~~~----  124 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYA--------------------------------PNVPIVLVGTKLDLRDDKQYL----  124 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEeChhhccChhhh----
Confidence            99999999998 68999986542                                468899999999996422100    


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe~L  245 (730)
                                                         + .....+.++.++++++|+..++ .|+||||++|.||+++|+.+
T Consensus       125 -----------------------------------~-~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~  168 (176)
T cd04133         125 -----------------------------------A-DHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAA  168 (176)
T ss_pred             -----------------------------------h-hccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHH
Confidence                                               0 0112357889999999999998 69999999999999999999


Q ss_pred             HHHH
Q psy17467        246 AAEL  249 (730)
Q Consensus       246 i~~l  249 (730)
                      ++.+
T Consensus       169 ~~~~  172 (176)
T cd04133         169 IKVV  172 (176)
T ss_pred             HHHH
Confidence            9865

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04122 Rab14 Rab14 subfamily

Probab=99.96  E-value=1.2e-28  Score=237.15  Aligned_cols=163  Identities=41%  Similarity=0.802  Sum_probs=146.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||+++|++|||||||+++|.++.|...+.++++.++....+.+++..+.+++|||+|++++...+..+++++|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            58999999999999999999999999988888999888888888999999999999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||++++.||+.+..|+..+....                               .++.|+++||||+|+.+         
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~-------------------------------~~~~~iiiv~nK~Dl~~---------  121 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLT-------------------------------NPNTVIFLIGNKADLEA---------  121 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhC-------------------------------CCCCeEEEEEECccccc---------
Confidence            99999999999999999876532                               25677888888888852         


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                                               .+.++.+++.++++..+++|+||||++|.||+++|..++
T Consensus       122 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~  160 (166)
T cd04122         122 -----------------------------------------QRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETA  160 (166)
T ss_pred             -----------------------------------------ccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence                                                     245678899999999999999999999999999999999


Q ss_pred             HHHH
Q psy17467        247 AELM  250 (730)
Q Consensus       247 ~~l~  250 (730)
                      +.+.
T Consensus       161 ~~~~  164 (166)
T cd04122         161 KKIY  164 (166)
T ss_pred             HHHh
Confidence            8774

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.96  E-value=9.9e-29  Score=254.91  Aligned_cols=177  Identities=28%  Similarity=0.476  Sum_probs=150.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      ...+||++||++|||||||+++|.++.|...+.||++.++ ...+.+++..+.++||||+|+++|..++..++++||++|
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI   89 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL   89 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence            3678999999999999999999999999999999998665 556888999999999999999999999999999999999


Q ss_pred             EEeecCCCCchhhh-HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         85 LVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        85 LVyDvtd~eSfe~L-~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      +|||++++.||+++ ..|++++.+..                                ++.|++|||||.||.++.... 
T Consensus        90 lVyDit~~~Sf~~~~~~w~~~i~~~~--------------------------------~~~piilVgNK~DL~~~~~~~-  136 (232)
T cd04174          90 LCFDISRPETVDSALKKWKAEIMDYC--------------------------------PSTRILLIGCKTDLRTDLSTL-  136 (232)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEECcccccccchh-
Confidence            99999999999985 78999987543                                467899999999996432100 


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCC-ChHHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASD-NVEKL  241 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~-GVeeL  241 (730)
                                                           .+-.+...+.|+.++++++|+.+|+ .|+||||++|. ||+++
T Consensus       137 -------------------------------------~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~  179 (232)
T cd04174         137 -------------------------------------MELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSI  179 (232)
T ss_pred             -------------------------------------hhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHH
Confidence                                                 0001112467999999999999999 69999999998 89999


Q ss_pred             HHHHHHHHHHH
Q psy17467        242 FMQIAAELMEK  252 (730)
Q Consensus       242 Fe~Li~~l~e~  252 (730)
                      |..++..+.+.
T Consensus       180 F~~~~~~~~~~  190 (232)
T cd04174         180 FRSASLLCLNK  190 (232)
T ss_pred             HHHHHHHHHHh
Confidence            99999988643

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01875 RhoG RhoG subfamily

Probab=99.96  E-value=1.4e-28  Score=244.54  Aligned_cols=173  Identities=27%  Similarity=0.509  Sum_probs=145.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||+++|++|||||||+.||..+.|...+.||++..+ ...+.+++..+.+++|||+|+++|..++..++++||++|+|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            48999999999999999999999999999999998544 55677899999999999999999999999999999999999


Q ss_pred             eecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         87 YDISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        87 yDvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      ||++++.||+++. .|++++.+..                                ++.|++|||||.||.+....... 
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~--------------------------------~~~piilvgNK~DL~~~~~~~~~-  128 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHC--------------------------------PNVPILLVGTKKDLRNDADTLKK-  128 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhC--------------------------------CCCCEEEEEeChhhhcChhhHHH-
Confidence            9999999999997 5888775432                                46899999999999643210000 


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC-CeEEEEecCCCCChHHHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg-~~fvEtSAktG~GVeeLFe~  244 (730)
                                                           -.+...+.++.++++++|+.++ +.|+||||++|.||+++|+.
T Consensus       129 -------------------------------------~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~  171 (191)
T cd01875         129 -------------------------------------LKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAE  171 (191)
T ss_pred             -------------------------------------HhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHH
Confidence                                                 0011235678899999999998 58999999999999999999


Q ss_pred             HHHHHH
Q psy17467        245 IAAELM  250 (730)
Q Consensus       245 Li~~l~  250 (730)
                      +++.+.
T Consensus       172 l~~~~~  177 (191)
T cd01875         172 AVRAVL  177 (191)
T ss_pred             HHHHHh
Confidence            998774

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04127 Rab27A Rab27a subfamily

Probab=99.96  E-value=2.3e-28  Score=237.42  Aligned_cols=168  Identities=35%  Similarity=0.662  Sum_probs=147.6

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeC----------CeEEEEEEEeCCCchhhhhhh
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN----------NERIKLQIWDTAGQERFRSIT   73 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vd----------g~~v~LqLwDTpG~e~~~sl~   73 (730)
                      +++.+||+++|++|||||||+++|.++.+...+.+|++.++....+.+.          +..+.++||||+|++++..++
T Consensus         1 ~~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~   80 (180)
T cd04127           1 YDYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLT   80 (180)
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHH
Confidence            3567999999999999999999999999999999999988877777664          456899999999999999999


Q ss_pred             HhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCC
Q psy17467         74 QSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKT  153 (730)
Q Consensus        74 ~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~  153 (730)
                      ..+++++|++|+|||+++++||+++..|+.++....                              ..++.|+++||||+
T Consensus        81 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~piiiv~nK~  130 (180)
T cd04127          81 TAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHA------------------------------YCENPDIVLCGNKA  130 (180)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCcEEEEEeCc
Confidence            999999999999999999999999999999986542                              12467888888888


Q ss_pred             CcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecC
Q psy17467        154 DLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAK  233 (730)
Q Consensus       154 DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAk  233 (730)
                      |+.+                                                  .+.++.+++.++++..++++++|||+
T Consensus       131 Dl~~--------------------------------------------------~~~v~~~~~~~~~~~~~~~~~e~Sak  160 (180)
T cd04127         131 DLED--------------------------------------------------QRQVSEEQAKALADKYGIPYFETSAA  160 (180)
T ss_pred             cchh--------------------------------------------------cCccCHHHHHHHHHHcCCeEEEEeCC
Confidence            8852                                                  24567788999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHH
Q psy17467        234 ASDNVEKLFMQIAAELME  251 (730)
Q Consensus       234 tG~GVeeLFe~Li~~l~e  251 (730)
                      +|.|++++|+.+++.+.+
T Consensus       161 ~~~~v~~l~~~l~~~~~~  178 (180)
T cd04127         161 TGTNVEKAVERLLDLVMK  178 (180)
T ss_pred             CCCCHHHHHHHHHHHHHh
Confidence            999999999999987754

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.96  E-value=1.8e-28  Score=240.47  Aligned_cols=171  Identities=27%  Similarity=0.505  Sum_probs=144.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      ++||+++|++|||||||+++|.++.|...+.||++..+ ...+.+++..+.++||||+|++++..++..+++++|++|+|
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv   79 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   79 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-EEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence            47999999999999999999999999888999998555 45677889899999999999999999999999999999999


Q ss_pred             eecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         87 YDISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        87 yDvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      ||+++++||+++. .|+..+....                                ++.|++|||||.|+.+.....   
T Consensus        80 ~d~~~~~s~~~~~~~w~~~i~~~~--------------------------------~~~piilvgnK~Dl~~~~~~~---  124 (175)
T cd01874          80 FSVVSPSSFENVKEKWVPEITHHC--------------------------------PKTPFLLVGTQIDLRDDPSTI---  124 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEECHhhhhChhhH---
Confidence            9999999999997 4988875432                                468999999999986432211   


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccc-cCCCCChHHHHHHHHhcC-CeEEEEecCCCCChHHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDR-EDREIPTEVGEDFAKRHD-MYYLETSAKASDNVEKLFM  243 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL-~~R~Vs~ee~~~lak~lg-~~fvEtSAktG~GVeeLFe  243 (730)
                                                          ++... ..+.++.++++++++..+ +.|+||||++|.||+++|+
T Consensus       125 ------------------------------------~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~  168 (175)
T cd01874         125 ------------------------------------EKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFD  168 (175)
T ss_pred             ------------------------------------HHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHH
Confidence                                                11111 236789999999999988 6899999999999999999


Q ss_pred             HHHHHH
Q psy17467        244 QIAAEL  249 (730)
Q Consensus       244 ~Li~~l  249 (730)
                      .+++.+
T Consensus       169 ~~~~~~  174 (175)
T cd01874         169 EAILAA  174 (175)
T ss_pred             HHHHHh
Confidence            998754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.96  E-value=2.3e-29  Score=283.53  Aligned_cols=245  Identities=19%  Similarity=0.122  Sum_probs=193.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCc----------hhhhhhh-
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ----------ERFRSIT-   73 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~----------e~~~sl~-   73 (730)
                      ..+||+++|.+|||||||+|+|++..+ .....++++.+.....+.+++.  .+.+|||||.          +.+..+. 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence            358999999999999999999998875 3445577777777778888874  4679999995          2333332 


Q ss_pred             HhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCC
Q psy17467         74 QSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKT  153 (730)
Q Consensus        74 ~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~  153 (730)
                      ..++++||++|+|||++++.+++++. ++..+..                                  .+.|+++|+||+
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----------------------------------~~~piIiV~NK~  332 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----------------------------------AGRALVLAFNKW  332 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----------------------------------cCCCEEEEEECc
Confidence            24678999999999999999988764 3333321                                  467889999999


Q ss_pred             CcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecC
Q psy17467        154 DLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAK  233 (730)
Q Consensus       154 DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAk  233 (730)
                      |+.+....                                               ..+..+..+.++....+++++|||+
T Consensus       333 Dl~~~~~~-----------------------------------------------~~~~~~i~~~l~~~~~~~~~~~SAk  365 (472)
T PRK03003        333 DLVDEDRR-----------------------------------------------YYLEREIDRELAQVPWAPRVNISAK  365 (472)
T ss_pred             ccCChhHH-----------------------------------------------HHHHHHHHHhcccCCCCCEEEEECC
Confidence            99642110                                               0011111223333345789999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHHhhcCCCCceeeec
Q psy17467        234 ASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNIDIKSVS  313 (730)
Q Consensus       234 tG~GVeeLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~~k~~p~~~~~~~~  313 (730)
                      +|.||+++|+.+.+.+..+..+.++...+++...+           ...++||...+++.+..|++|.+..||.|+.+++
T Consensus       366 ~g~gv~~lf~~i~~~~~~~~~~i~t~~ln~~~~~~-----------~~~~~~p~~~g~~~k~~y~~q~~~~pp~f~~~~~  434 (472)
T PRK03003        366 TGRAVDKLVPALETALESWDTRIPTGRLNAWLGEL-----------VAATPPPVRGGKQPRILFATQASTRPPTFVLFTT  434 (472)
T ss_pred             CCCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH-----------HHcCCCCCCCCeeeeEEEEECCCCCCCEEEEEeC
Confidence            99999999999999998888888888888887777           4567788888999999999999999999999954


Q ss_pred             cccccchhhHHHhHhhhhhhhccCCceeEEEeec
Q psy17467        314 GISQIRSDIVKSLSLYYYTFVDLLHFKDCVYLSG  347 (730)
Q Consensus       314 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (730)
                        +.++++|.|||.|.+|+.|++-|+|+++.+++
T Consensus       435 --~~~~~~y~~~l~~~~r~~~~~~g~pi~~~~~~  466 (472)
T PRK03003        435 --GFLEAGYRRFLERRLRETFGFEGSPIRISVRV  466 (472)
T ss_pred             --CCCChHHHHHHHHHHHHHcCCCcceEEEEEEe
Confidence              78999999999999999999999999999987

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.96  E-value=3e-28  Score=238.05  Aligned_cols=164  Identities=27%  Similarity=0.511  Sum_probs=144.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||+|+|++|||||||+++|.++.|...+.||++..+ ...+.+++..+.+++|||+|++++..++..+++++|++|+|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            37999999999999999999999999988889998444 55678899999999999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||++++.||+.+..|+..+.+..                              ..+++|+++||||+|+.+         
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~------------------------------~~~~~piilvgNK~Dl~~---------  121 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVR------------------------------LTEDIPLVLVGNKVDLES---------  121 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEEEChhhhh---------
Confidence            99999999999999988876532                              125678888888888742         


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                                               .+.++.++++++++.++++|+||||++|.||+++|++++
T Consensus       122 -----------------------------------------~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141         122 -----------------------------------------QRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             -----------------------------------------cCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence                                                     256788899999999999999999999999999999999


Q ss_pred             HHHHH
Q psy17467        247 AELME  251 (730)
Q Consensus       247 ~~l~e  251 (730)
                      +.+.+
T Consensus       161 ~~~~~  165 (172)
T cd04141         161 REIRR  165 (172)
T ss_pred             HHHHH
Confidence            88754

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.96  E-value=4.4e-28  Score=233.74  Aligned_cols=165  Identities=47%  Similarity=0.864  Sum_probs=148.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      ++.+||+++|++|||||||+++|.++.|...+.|+.+.++....+.+++..+.+++|||+|++.+..++..++++||++|
T Consensus         1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i   80 (167)
T cd01867           1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII   80 (167)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence            46799999999999999999999999999999999998888888889998899999999999999999999999999999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      +|||++++.||+.+..|+..+.+..                               ..+.|+++||||+|+.+       
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~-------------------------------~~~~p~iiv~nK~Dl~~-------  122 (167)
T cd01867          81 LVYDITDEKSFENIRNWMRNIEEHA-------------------------------SEDVERMLVGNKCDMEE-------  122 (167)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhC-------------------------------CCCCcEEEEEECccccc-------
Confidence            9999999999999999999987642                               14678888889888852       


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~  244 (730)
                                                                 .+.+..+++..+++.+++++++|||++|.||+++|++
T Consensus       123 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  159 (167)
T cd01867         123 -------------------------------------------KRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFT  159 (167)
T ss_pred             -------------------------------------------ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence                                                       2356678888999999999999999999999999999


Q ss_pred             HHHHHH
Q psy17467        245 IAAELM  250 (730)
Q Consensus       245 Li~~l~  250 (730)
                      +++.+.
T Consensus       160 i~~~~~  165 (167)
T cd01867         160 LAKDIK  165 (167)
T ss_pred             HHHHHH
Confidence            998874

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.96  E-value=8.2e-28  Score=240.03  Aligned_cols=171  Identities=33%  Similarity=0.621  Sum_probs=149.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeC-CeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN-NERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vd-g~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      +||+|+|++|||||||+++|+++.+...+.||++.++....+.++ +..+.+++|||+|++++..++..++++||++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999999999999999988888888888 8889999999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||+++++||+.+..|+.++.....                           .....+.|++|||||+|+.+         
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~---------------------------~~~~~~~piilv~NK~Dl~~---------  124 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVT---------------------------LPNGEPIPCLLLANKCDLKK---------  124 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhc---------------------------ccCCCCCcEEEEEECCCccc---------
Confidence            999999999999999998865421                           00125678888888888842         


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC-CeEEEEecCCCCChHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg-~~fvEtSAktG~GVeeLFe~L  245 (730)
                                                               .+.++.++++++++..+ +.|++|||++|.||+++|+++
T Consensus       125 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l  163 (201)
T cd04107         125 -----------------------------------------RLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFL  163 (201)
T ss_pred             -----------------------------------------ccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHH
Confidence                                                     24567889999999999 689999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy17467        246 AAELMEKLAE  255 (730)
Q Consensus       246 i~~l~e~~~~  255 (730)
                      ++.+......
T Consensus       164 ~~~l~~~~~~  173 (201)
T cd04107         164 VKNILANDKN  173 (201)
T ss_pred             HHHHHHhchh
Confidence            9998765443

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.96  E-value=1.6e-27  Score=228.55  Aligned_cols=164  Identities=47%  Similarity=0.858  Sum_probs=146.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      +++||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+++||++|++++..++..+++++|++|+
T Consensus         1 ~~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~   80 (166)
T cd01869           1 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   80 (166)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEE
Confidence            35899999999999999999999999988888999988888889899988999999999999999999999999999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      |||+++++||+.+..|+..+....                               .++.|+++||||+|+..        
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~-------------------------------~~~~~~iiv~nK~Dl~~--------  121 (166)
T cd01869          81 VYDVTDQESFNNVKQWLQEIDRYA-------------------------------SENVNKLLVGNKCDLTD--------  121 (166)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhC-------------------------------CCCCcEEEEEEChhccc--------
Confidence            999999999999999999986542                               14578888888888742        


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L  245 (730)
                                                                .+.+..+++..+++..+++++++||++|.||+++|+.+
T Consensus       122 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  159 (166)
T cd01869         122 ------------------------------------------KRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTM  159 (166)
T ss_pred             ------------------------------------------ccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHH
Confidence                                                      23567788999999999999999999999999999999


Q ss_pred             HHHHH
Q psy17467        246 AAELM  250 (730)
Q Consensus       246 i~~l~  250 (730)
                      ++.+.
T Consensus       160 ~~~~~  164 (166)
T cd01869         160 AREIK  164 (166)
T ss_pred             HHHHH
Confidence            98774

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04111 Rab39 Rab39 subfamily

Probab=99.95  E-value=2.6e-27  Score=239.73  Aligned_cols=181  Identities=40%  Similarity=0.698  Sum_probs=154.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEe-CCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEI-NNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~v-dg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      +.+||+|+|++|||||||+++|+++.+...+.||++.++..+.+.+ ++..+.+++|||+|++.+..++..+++++|++|
T Consensus         1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (211)
T cd04111           1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL   80 (211)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence            3589999999999999999999999998888899998988888887 467889999999999999999999999999999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      +|||+++++||+++..|+.++.....                              ....|++|||||+|+.+       
T Consensus        81 lv~D~~~~~Sf~~l~~~~~~i~~~~~------------------------------~~~~~iilvgNK~Dl~~-------  123 (211)
T cd04111          81 LVFDITNRESFEHVHDWLEEARSHIQ------------------------------PHRPVFILVGHKCDLES-------  123 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC------------------------------CCCCeEEEEEEcccccc-------
Confidence            99999999999999999999875431                              13456777888888742       


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~  244 (730)
                                                                 .+.++.+++.++++.+++.|+||||++|.||+++|+.
T Consensus       124 -------------------------------------------~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~  160 (211)
T cd04111         124 -------------------------------------------QRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL  160 (211)
T ss_pred             -------------------------------------------ccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence                                                       2467788899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccccccc
Q psy17467        245 IAAELMEKLAEKLTIMHDRGVG  266 (730)
Q Consensus       245 Li~~l~e~~~~~~~~~~~~~~~  266 (730)
                      |++.+.+............|.+
T Consensus       161 l~~~~~~~~~~~~~~~~~~~~~  182 (211)
T cd04111         161 LTQEIYERIKRGELCALDGWDG  182 (211)
T ss_pred             HHHHHHHHhhcCCCCccccccc
Confidence            9999877765554445555543

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01865 Rab3 Rab3 subfamily

Probab=99.95  E-value=2.3e-27  Score=228.34  Aligned_cols=162  Identities=38%  Similarity=0.725  Sum_probs=143.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+++|++|||||||+++|.++.+...+.|++|.++....+..++..+.+++|||+|++++..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999998888899998888778888888899999999999999999999999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |++++++|+.+..|+..+.+..                               .++.|+++||||+|+.+          
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~-------------------------------~~~~piivv~nK~Dl~~----------  120 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYS-------------------------------WDNAQVILVGNKCDMED----------  120 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-------------------------------CCCCCEEEEEECcccCc----------
Confidence            9999999999999999986532                               13567888888888752          


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA  247 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~  247 (730)
                                                              .+.+..+++.++++.+++++++|||++|.||+++|++++.
T Consensus       121 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (165)
T cd01865         121 ----------------------------------------ERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVD  160 (165)
T ss_pred             ----------------------------------------ccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence                                                    2345678888899999999999999999999999999988


Q ss_pred             HHH
Q psy17467        248 ELM  250 (730)
Q Consensus       248 ~l~  250 (730)
                      .+.
T Consensus       161 ~~~  163 (165)
T cd01865         161 IIC  163 (165)
T ss_pred             HHH
Confidence            663

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.95  E-value=1.5e-27  Score=244.69  Aligned_cols=173  Identities=28%  Similarity=0.505  Sum_probs=145.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+|||++|||||||+++|.++.|+..|.||++.++ ...+.+++..+.|.||||+|++.|..++..+++++|++|+||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~-~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY-TASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccce-EEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            7999999999999999999999999999999998555 567888999999999999999999999999999999999999


Q ss_pred             ecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         88 DISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        88 Dvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      |+++++||+++. .|..++....                                ++.|++|||||.|+.++......+ 
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~~~--------------------------------~~~piiLVgnK~DL~~~~~~~~~~-  127 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQEFC--------------------------------PNAKVVLVGCKLDMRTDLATLREL-  127 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC--------------------------------CCCCEEEEEECcccccchhhhhhh-
Confidence            999999999995 5777664432                                678999999999997542211000 


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCC-hHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDN-VEKLFMQ  244 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~G-VeeLFe~  244 (730)
                                                         +.  .....++.++++.+|+..|+ .|+||||+++.| |+++|+.
T Consensus       128 -----------------------------------~~--~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~  170 (222)
T cd04173         128 -----------------------------------SK--QRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHV  170 (222)
T ss_pred             -----------------------------------hh--ccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHH
Confidence                                               00  01135788999999999996 899999999985 9999999


Q ss_pred             HHHHHHH
Q psy17467        245 IAAELME  251 (730)
Q Consensus       245 Li~~l~e  251 (730)
                      ++...+.
T Consensus       171 ~~~~~~~  177 (222)
T cd04173         171 ATVASLG  177 (222)
T ss_pred             HHHHHHh
Confidence            9997754

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.95  E-value=2.1e-27  Score=232.72  Aligned_cols=170  Identities=26%  Similarity=0.475  Sum_probs=143.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+++|++|||||||+.+|+++.|...+.|+++ +.+...+.+++..+.+++|||+|++.+..++..+++++|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            7999999999999999999999999988989987 555667788998999999999999999999999999999999999


Q ss_pred             ecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         88 DISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        88 Dvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      |+++++||+++. .|+..+....                                ++.|+++||||.|+.+......   
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~--------------------------------~~~piilvgnK~Dl~~~~~~~~---  125 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHC--------------------------------PNTPIILVGTKLDLRDDKDTIE---  125 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEeeChhhccChhhHH---
Confidence            999999999996 5888875432                                5689999999999964221100   


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe~L  245 (730)
                                                         +-.....+.++.+++.++++.+++ .|+||||++|.||+++|+.+
T Consensus       126 -----------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l  170 (174)
T cd01871         126 -----------------------------------KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEA  170 (174)
T ss_pred             -----------------------------------HHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHH
Confidence                                               000112357899999999999985 99999999999999999999


Q ss_pred             HHH
Q psy17467        246 AAE  248 (730)
Q Consensus       246 i~~  248 (730)
                      ++.
T Consensus       171 ~~~  173 (174)
T cd01871         171 IRA  173 (174)
T ss_pred             HHh
Confidence            864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04117 Rab15 Rab15 subfamily

Probab=99.95  E-value=2.7e-27  Score=227.80  Aligned_cols=160  Identities=40%  Similarity=0.798  Sum_probs=143.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+++|++|||||||+++|+++.|...+.||++.++....+.+++..+.+++||++|++++..++..+++++|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999999999999888999998888888999998899999999999999999999999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |+++++||+.+..|++++....                               ..+.|+++||||.|+.+          
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~-------------------------------~~~~~iilvgnK~Dl~~----------  119 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYA-------------------------------PEGVQKILIGNKADEEQ----------  119 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-------------------------------CCCCeEEEEEECccccc----------
Confidence            9999999999999999886542                               13577888888888742          


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA  247 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~  247 (730)
                                                              .+.++.+++..+++.++++|+||||++|.||+++|++|++
T Consensus       120 ----------------------------------------~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~  159 (161)
T cd04117         120 ----------------------------------------KRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTE  159 (161)
T ss_pred             ----------------------------------------ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHh
Confidence                                                    3567789999999999999999999999999999999986


Q ss_pred             H
Q psy17467        248 E  248 (730)
Q Consensus       248 ~  248 (730)
                      .
T Consensus       160 ~  160 (161)
T cd04117         160 L  160 (161)
T ss_pred             h
Confidence            4

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.95  E-value=3.2e-27  Score=224.87  Aligned_cols=161  Identities=39%  Similarity=0.771  Sum_probs=148.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEee
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYD   88 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyD   88 (730)
                      ||+++|+++||||||+++|.++.|...+.||.|.+.....+.+++..+.+++||++|++++..++..+++++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHh
Q psy17467         89 ISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMV  168 (730)
Q Consensus        89 vtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~  168 (730)
                      +++++||+.+..|++.+.....                               .+.|++|+|||.|+.+           
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~-------------------------------~~~~iivvg~K~D~~~-----------  118 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKP-------------------------------EDIPIIVVGNKSDLSD-----------  118 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHST-------------------------------TTSEEEEEEETTTGGG-----------
T ss_pred             cccccccccccccccccccccc-------------------------------ccccceeeeccccccc-----------
Confidence            9999999999999999987652                               3567778888888752           


Q ss_pred             hhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHHH
Q psy17467        169 FVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE  248 (730)
Q Consensus       169 ~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~~  248 (730)
                                                             .+.++.++++++++.++++|+||||+++.||.++|..+++.
T Consensus       119 ---------------------------------------~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~  159 (162)
T PF00071_consen  119 ---------------------------------------EREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRK  159 (162)
T ss_dssp             ---------------------------------------GSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHH
T ss_pred             ---------------------------------------cccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHH
Confidence                                                   36789999999999999999999999999999999999988


Q ss_pred             HH
Q psy17467        249 LM  250 (730)
Q Consensus       249 l~  250 (730)
                      +.
T Consensus       160 i~  161 (162)
T PF00071_consen  160 IL  161 (162)
T ss_dssp             HH
T ss_pred             Hh
Confidence            74

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>KOG0093|consensus

Probab=99.95  E-value=6.4e-28  Score=228.83  Aligned_cols=172  Identities=39%  Similarity=0.751  Sum_probs=156.6

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      ..++.+|+.|+|+..||||||+.|+.+..|.+.+.+|+|+++..+++.-..+.+.+++|||+|+++++.+...||++|++
T Consensus        17 nFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamg   96 (193)
T KOG0093|consen   17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMG   96 (193)
T ss_pred             cccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccce
Confidence            45788999999999999999999999999999999999999999999888889999999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +|||||++|.+||..++.|...|+.++-                               .++||++||||+|++      
T Consensus        97 fiLmyDitNeeSf~svqdw~tqIktysw-------------------------------~naqvilvgnKCDmd------  139 (193)
T KOG0093|consen   97 FILMYDITNEESFNSVQDWITQIKTYSW-------------------------------DNAQVILVGNKCDMD------  139 (193)
T ss_pred             EEEEEecCCHHHHHHHHHHHHHheeeec-------------------------------cCceEEEEecccCCc------
Confidence            9999999999999999999999976542                               467777777777775      


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF  242 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF  242 (730)
                                                                  .+|.++.|.++.++..+|..|+|+|||.+.||+++|
T Consensus       140 --------------------------------------------~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~F  175 (193)
T KOG0093|consen  140 --------------------------------------------SERVISHERGRQLADQLGFEFFETSAKENINVKQVF  175 (193)
T ss_pred             --------------------------------------------cceeeeHHHHHHHHHHhChHHhhhcccccccHHHHH
Confidence                                                        347899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy17467        243 MQIAAELMEKLAE  255 (730)
Q Consensus       243 e~Li~~l~e~~~~  255 (730)
                      +.++..+.++..+
T Consensus       176 e~lv~~Ic~kmse  188 (193)
T KOG0093|consen  176 ERLVDIICDKMSE  188 (193)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999988665443

>cd04136 Rap_like Rap-like subfamily

Probab=99.95  E-value=2.3e-27  Score=225.32  Aligned_cols=161  Identities=32%  Similarity=0.586  Sum_probs=140.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+++|++|||||||++++.++.+...+.||++ +.+...+.+++..+.+++|||+|++++..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999999888888887 566777888998999999999999999999999999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |++++.||+++..|++.+.....                              .++.|+++||||+|+.+          
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~------------------------------~~~~piilv~nK~Dl~~----------  120 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKD------------------------------TENVPMVLVGNKCDLED----------  120 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcC------------------------------CCCCCEEEEEECccccc----------
Confidence            99999999999999999876431                              14678888888888842          


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA  247 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~  247 (730)
                                                              .+.++.+++..+++.+++++++|||++|.||+++|+++++
T Consensus       121 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04136         121 ----------------------------------------ERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR  160 (163)
T ss_pred             ----------------------------------------cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence                                                    1345667788888888999999999999999999999987


Q ss_pred             HH
Q psy17467        248 EL  249 (730)
Q Consensus       248 ~l  249 (730)
                      .+
T Consensus       161 ~~  162 (163)
T cd04136         161 QI  162 (163)
T ss_pred             hc
Confidence            54

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd01868 Rab11_like Rab11-like

Probab=99.95  E-value=4.5e-27  Score=224.83  Aligned_cols=164  Identities=43%  Similarity=0.792  Sum_probs=145.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      ++.+||+++|++|||||||++++.++.+...+.|+++.++....+..++..+.+++||++|++++..++..++++++++|
T Consensus         1 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   80 (165)
T cd01868           1 DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   80 (165)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence            35689999999999999999999999998888899998888899999998899999999999999999999999999999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      +|||++++.+|+++..|+..+.+...                               .+.|+++||||+|+.+       
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~-------------------------------~~~pi~vv~nK~Dl~~-------  122 (165)
T cd01868          81 LVYDITKKQTFENVERWLKELRDHAD-------------------------------SNIVIMLVGNKSDLRH-------  122 (165)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCC-------------------------------CCCeEEEEEECccccc-------
Confidence            99999999999999999999876531                               2568888888888752       


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~  244 (730)
                                                                 .+.+..++...++...++.++||||++|.||+++|+.
T Consensus       123 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  159 (165)
T cd01868         123 -------------------------------------------LRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQ  159 (165)
T ss_pred             -------------------------------------------cccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence                                                       2456778888999888999999999999999999999


Q ss_pred             HHHHH
Q psy17467        245 IAAEL  249 (730)
Q Consensus       245 Li~~l  249 (730)
                      ++..+
T Consensus       160 l~~~i  164 (165)
T cd01868         160 LLTEI  164 (165)
T ss_pred             HHHHh
Confidence            98764

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.95  E-value=5.4e-29  Score=273.03  Aligned_cols=253  Identities=17%  Similarity=0.072  Sum_probs=200.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhH-----------
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPG-QGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQ-----------   74 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~-~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~-----------   74 (730)
                      .+||+|+|.||||||||+|++++.+.... ..+.++.|.....+++++  -.+.++||+|..+...+..           
T Consensus       178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~  255 (444)
T COG1160         178 PIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSVARTL  255 (444)
T ss_pred             ceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEeehhhH
Confidence            59999999999999999999999876543 445555555555666667  5689999999765433332           


Q ss_pred             hhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCC
Q psy17467         75 SYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTD  154 (730)
Q Consensus        75 ~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~D  154 (730)
                      ..+..||++++|.|++.+-+-++.+ ...                                  .+.+.+.++++|.||||
T Consensus       256 ~aI~~a~vvllviDa~~~~~~qD~~-ia~----------------------------------~i~~~g~~~vIvvNKWD  300 (444)
T COG1160         256 KAIERADVVLLVIDATEGISEQDLR-IAG----------------------------------LIEEAGRGIVIVVNKWD  300 (444)
T ss_pred             hHHhhcCEEEEEEECCCCchHHHHH-HHH----------------------------------HHHHcCCCeEEEEEccc
Confidence            4477899999999999988777654 111                                  22346789999999999


Q ss_pred             cchhhH-HHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHH-HHHHHhcCCeEEEEec
Q psy17467        155 LDEDEH-VLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVG-EDFAKRHDMYYLETSA  232 (730)
Q Consensus       155 L~~~e~-~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~-~~lak~lg~~fvEtSA  232 (730)
                      +.+..+ ..                                              ... .++. +.+...-.++.+++||
T Consensus       301 l~~~~~~~~----------------------------------------------~~~-k~~i~~~l~~l~~a~i~~iSA  333 (444)
T COG1160         301 LVEEDEATM----------------------------------------------EEF-KKKLRRKLPFLDFAPIVFISA  333 (444)
T ss_pred             cCCchhhHH----------------------------------------------HHH-HHHHHHHhccccCCeEEEEEe
Confidence            865311 00                                              000 1122 2233333578999999


Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHHhhcCCCCceeee
Q psy17467        233 KASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNIDIKSV  312 (730)
Q Consensus       233 ktG~GVeeLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~~k~~p~~~~~~~  312 (730)
                      ++|.|++++|+.+......+..+.++...+++...+           ...++|+.-.+++.+..|++|.+..||.|+.++
T Consensus       334 ~~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~~l~~a-----------~~~~pP~~~~G~r~ki~Ya~q~~~~PP~fvlf~  402 (444)
T COG1160         334 LTGQGLDKLFEAIKEIYECATRRISTSLLNRVLEDA-----------VAKHPPPVRYGRRLKIKYATQVSTNPPTFVLFG  402 (444)
T ss_pred             cCCCChHHHHHHHHHHHHHhccccCHHHHHHHHHHH-----------HHhCCCCccCCceEEEEEEecCCCCCCEEEEEe
Confidence            999999999999999999999999999999988887           445567777799999999999999999999999


Q ss_pred             ccccccchhhHHHhHhhhhhhhccCCceeEEEeecCCchhhhh
Q psy17467        313 SGISQIRSDIVKSLSLYYYTFVDLLHFKDCVYLSGHFDAQIAS  355 (730)
Q Consensus       313 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (730)
                      ++++.++.+|.|||+|.+|+.|++.|+|+++.+++ .+|||++
T Consensus       403 N~~~~~~~sY~RyL~n~~R~~f~~~g~Pi~l~~k~-~~~~~~~  444 (444)
T COG1160         403 NRPKALHFSYKRYLENRLRKAFGFEGTPIRLEFKK-KKNPYAG  444 (444)
T ss_pred             cchhhCchHHHHHHHHHHHHHcCCCCCcEEEEEec-CCCccCC
Confidence            99999999999999999999999999999999999 8888763

>cd04110 Rab35 Rab35 subfamily

Probab=99.95  E-value=5.3e-27  Score=234.39  Aligned_cols=170  Identities=45%  Similarity=0.741  Sum_probs=150.1

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      ++++.+||+|+|++|||||||+++|.++.+...+.||++.++....+.+++..+.+.|||++|++.+..++..+++++|+
T Consensus         2 ~~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~   81 (199)
T cd04110           2 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHG   81 (199)
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcE
Confidence            35678999999999999999999999999988888999988888888888988999999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +|+|||+++++||+.+..|++.+....                                +..|+++||||+|+.+     
T Consensus        82 iilv~D~~~~~s~~~~~~~~~~i~~~~--------------------------------~~~piivVgNK~Dl~~-----  124 (199)
T cd04110          82 VIVVYDVTNGESFVNVKRWLQEIEQNC--------------------------------DDVCKVLVGNKNDDPE-----  124 (199)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEECccccc-----
Confidence            999999999999999999999986532                                4568888888888742     


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF  242 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF  242 (730)
                                                                   .+.++.+++..+++..++.|++|||++|.||+++|
T Consensus       125 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf  159 (199)
T cd04110         125 ---------------------------------------------RKVVETEDAYKFAGQMGISLFETSAKENINVEEMF  159 (199)
T ss_pred             ---------------------------------------------ccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHH
Confidence                                                         13466788889999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy17467        243 MQIAAELMEKLA  254 (730)
Q Consensus       243 e~Li~~l~e~~~  254 (730)
                      ++|++.+.....
T Consensus       160 ~~l~~~~~~~~~  171 (199)
T cd04110         160 NCITELVLRAKK  171 (199)
T ss_pred             HHHHHHHHHhhh
Confidence            999998865433

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.95  E-value=6.1e-27  Score=222.19  Aligned_cols=167  Identities=26%  Similarity=0.626  Sum_probs=146.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+++|++|||||||+++|+++.+...+.|+++.++....+.+++..+.+++|||+|++.+..++..+++++|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999999999999999988888999999999999999999999999999999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |++++.+|+.+..|+.++.+.....                          ....+.|+++|+||+|+.+          
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~--------------------------~~~~~~piilv~nK~Dl~~----------  124 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPH--------------------------GNMENIVVVVCANKIDLTK----------  124 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhcccc--------------------------ccCCCceEEEEEEchhccc----------
Confidence            9999999999999999997654210                          0124678888888888742          


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA  247 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~  247 (730)
                                                              ++.++.++++.+++..++++++|||++|.||+++|+.|++
T Consensus       125 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  164 (168)
T cd04119         125 ----------------------------------------HRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFS  164 (168)
T ss_pred             ----------------------------------------ccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence                                                    2456778888899999999999999999999999999998


Q ss_pred             HHH
Q psy17467        248 ELM  250 (730)
Q Consensus       248 ~l~  250 (730)
                      .++
T Consensus       165 ~l~  167 (168)
T cd04119         165 SIV  167 (168)
T ss_pred             HHh
Confidence            774

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.95  E-value=3.6e-27  Score=240.21  Aligned_cols=162  Identities=31%  Similarity=0.571  Sum_probs=143.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      ...+||+++|++|||||||+++|+.+.+...+.||+|.++....+..++..+.+++|||+|++++..++..+++++|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            56799999999999999999999999999999999999988888888888899999999999999999999999999999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      +|||++++.||+.+..|+.++.+..                                ++.|++|||||+|+.+       
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~--------------------------------~~~piilvgNK~Dl~~-------  131 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVC--------------------------------ENIPIVLCGNKVDVKN-------  131 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC--------------------------------CCCcEEEEEEchhhhh-------
Confidence            9999999999999999999987542                                4678888888888842       


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~  244 (730)
                                                                  +.+..+++ .+++..++.|+||||++|.||+++|++
T Consensus       132 --------------------------------------------~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~  166 (219)
T PLN03071        132 --------------------------------------------RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLY  166 (219)
T ss_pred             --------------------------------------------ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHH
Confidence                                                        23344444 677788899999999999999999999


Q ss_pred             HHHHHH
Q psy17467        245 IAAELM  250 (730)
Q Consensus       245 Li~~l~  250 (730)
                      +++.+.
T Consensus       167 l~~~~~  172 (219)
T PLN03071        167 LARKLA  172 (219)
T ss_pred             HHHHHH
Confidence            998774

>PTZ00369 Ras-like protein; Provisional

Probab=99.95  E-value=6.3e-27  Score=231.52  Aligned_cols=167  Identities=32%  Similarity=0.529  Sum_probs=145.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||+++|++|||||||+++|.++.+...+.||++.++ .+.+.+++..+.+++|||+|++++..++..+++++|++|+|
T Consensus         5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv   83 (189)
T PTZ00369          5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV   83 (189)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence            48999999999999999999999999888889888544 67788899899999999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||++++.||+.+..|+..+.+..                              ..++.|+++||||.|+.+         
T Consensus        84 ~D~s~~~s~~~~~~~~~~i~~~~------------------------------~~~~~piiiv~nK~Dl~~---------  124 (189)
T PTZ00369         84 YSITSRSSFEEIASFREQILRVK------------------------------DKDRVPMILVGNKCDLDS---------  124 (189)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEEECccccc---------
Confidence            99999999999999999886542                              124678888888888742         


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                                               .+.++.+++..+++.++++|++|||++|.||+++|++++
T Consensus       125 -----------------------------------------~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~  163 (189)
T PTZ00369        125 -----------------------------------------ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELV  163 (189)
T ss_pred             -----------------------------------------ccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence                                                     245667788888888899999999999999999999999


Q ss_pred             HHHHHHHH
Q psy17467        247 AELMEKLA  254 (730)
Q Consensus       247 ~~l~e~~~  254 (730)
                      +.+.....
T Consensus       164 ~~l~~~~~  171 (189)
T PTZ00369        164 REIRKYLK  171 (189)
T ss_pred             HHHHHHhh
Confidence            88865433

>cd04109 Rab28 Rab28 subfamily

Probab=99.95  E-value=6.2e-27  Score=236.80  Aligned_cols=167  Identities=35%  Similarity=0.575  Sum_probs=146.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCC-eEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINN-ERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg-~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      +||+++|++|||||||+++|.++.|...+.||++.+++.+.+.+++ ..+.++||||+|++.+..++..++++||++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999999999999999888888865 578999999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||+++++||+++..|+..+.+....                            ...+.|+++||||+|+.+         
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~----------------------------~~~~~piilVgNK~DL~~---------  123 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKS----------------------------SETQPLVVLVGNKTDLEH---------  123 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccc----------------------------cCCCceEEEEEECccccc---------
Confidence            9999999999999999999765310                            013567778888888742         


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                                               .+.++.++++.+++.+++.+++|||++|.||+++|++++
T Consensus       124 -----------------------------------------~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~  162 (215)
T cd04109         124 -----------------------------------------NRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLA  162 (215)
T ss_pred             -----------------------------------------ccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence                                                     356788899999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy17467        247 AELMEK  252 (730)
Q Consensus       247 ~~l~e~  252 (730)
                      +.+...
T Consensus       163 ~~l~~~  168 (215)
T cd04109         163 AELLGV  168 (215)
T ss_pred             HHHHhc
Confidence            887653

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04128 Spg1 Spg1p

Probab=99.95  E-value=5.2e-27  Score=232.23  Aligned_cols=166  Identities=30%  Similarity=0.507  Sum_probs=142.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+++|++|||||||++||+++.|...+.||+|.++..+.+.+++..+.+++|||+|++++..++..++++||++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999999989999998888888999999999999999999999999999999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |++++.||+++..|++++.+...                               ...| ++||||+|+..+..       
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~-------------------------------~~~p-ilVgnK~Dl~~~~~-------  121 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNK-------------------------------TAIP-ILVGTKYDLFADLP-------  121 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCC-------------------------------CCCE-EEEEEchhcccccc-------
Confidence            99999999999999999866431                               2345 56789999853100       


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA  247 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~  247 (730)
                                                         +   ..+....++++++++..++++++|||++|.||+++|+++++
T Consensus       122 -----------------------------------~---~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~  163 (182)
T cd04128         122 -----------------------------------P---EEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLA  163 (182)
T ss_pred             -----------------------------------c---hhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence                                               0   01112246788899999999999999999999999999998


Q ss_pred             HHH
Q psy17467        248 ELM  250 (730)
Q Consensus       248 ~l~  250 (730)
                      .+.
T Consensus       164 ~l~  166 (182)
T cd04128         164 KAF  166 (182)
T ss_pred             HHH
Confidence            774

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>PLN03110 Rab GTPase; Provisional

Probab=99.95  E-value=1.1e-26  Score=235.92  Aligned_cols=170  Identities=43%  Similarity=0.775  Sum_probs=152.3

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI   83 (730)
                      .++.+||+++|++|||||||+++|.++.+...+.+|+|.++..+.+.+++..+.++||||+|++++..++..++++++++
T Consensus         9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~   88 (216)
T PLN03110          9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA   88 (216)
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence            45789999999999999999999999999888889999999999999999999999999999999999999999999999


Q ss_pred             EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      |+|||++++.+|+.+..|+..+....                               ..+.|+++||||+|+..      
T Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~-------------------------------~~~~piiiv~nK~Dl~~------  131 (216)
T PLN03110         89 LLVYDITKRQTFDNVQRWLRELRDHA-------------------------------DSNIVIMMAGNKSDLNH------  131 (216)
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHhC-------------------------------CCCCeEEEEEEChhccc------
Confidence            99999999999999999999986643                               14678888888888742      


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM  243 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe  243 (730)
                                                                  .+.++.++++.++...+++|++|||++|.||+++|+
T Consensus       132 --------------------------------------------~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~  167 (216)
T PLN03110        132 --------------------------------------------LRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQ  167 (216)
T ss_pred             --------------------------------------------ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence                                                        246777889999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy17467        244 QIAAELMEKLA  254 (730)
Q Consensus       244 ~Li~~l~e~~~  254 (730)
                      .+++.+.+...
T Consensus       168 ~l~~~i~~~~~  178 (216)
T PLN03110        168 TILLEIYHIIS  178 (216)
T ss_pred             HHHHHHHHHhh
Confidence            99999876543

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.95  E-value=1.4e-27  Score=264.43  Aligned_cols=247  Identities=19%  Similarity=0.089  Sum_probs=184.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhh-----------
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSIT-----------   73 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~-----------   73 (730)
                      ..+||+++|.+|||||||++++++.... ....+.++.+.....+.+++  ..+.+|||||..+.....           
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~~  248 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLRT  248 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHHH
Confidence            3589999999999999999999987643 33345555555556666666  468999999975443221           


Q ss_pred             HhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCC
Q psy17467         74 QSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKT  153 (730)
Q Consensus        74 ~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~  153 (730)
                      ..+++.||++|+|+|++++.+.++.. ++..+.                                  ..+.|+++|+||+
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~----------------------------------~~~~~iiiv~NK~  293 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDLR-IAGLIL----------------------------------EAGKALVIVVNKW  293 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHH----------------------------------HcCCcEEEEEECc
Confidence            24688999999999999988877653 222221                                  1357899999999


Q ss_pred             CcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecC
Q psy17467        154 DLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAK  233 (730)
Q Consensus       154 DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAk  233 (730)
                      |+.++....                                              ..+..+....+....++++++|||+
T Consensus       294 Dl~~~~~~~----------------------------------------------~~~~~~~~~~~~~~~~~~vi~~SA~  327 (429)
T TIGR03594       294 DLVKDEKTR----------------------------------------------EEFKKELRRKLPFLDFAPIVFISAL  327 (429)
T ss_pred             ccCCCHHHH----------------------------------------------HHHHHHHHHhcccCCCCceEEEeCC
Confidence            996211100                                              0011111122222235789999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHHhhcCCCCceeeec
Q psy17467        234 ASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNIDIKSVS  313 (730)
Q Consensus       234 tG~GVeeLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~~k~~p~~~~~~~~  313 (730)
                      +|.||+++|+++.+.+..+..+.++...+++...+           ...++||...+++.+..|++|.+..||.|+.+++
T Consensus       328 ~g~~v~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~-----------~~~~~~p~~~~~~~k~~y~~q~~~~pp~~~~~~n  396 (429)
T TIGR03594       328 TGQGVDKLLDAIDEVYENANRRISTSKLNRVLEEA-----------VAAHPPPLVNGRRLKIKYATQVGTNPPTFVLFGN  396 (429)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHH-----------HHcCCCCCCCCceeeEEEEECCCCCCCEEEEEEc
Confidence            99999999999999887766666666555555444           2345677778888999999999999999999999


Q ss_pred             cccccchhhHHHhHhhhhhhhccCCceeEEEee
Q psy17467        314 GISQIRSDIVKSLSLYYYTFVDLLHFKDCVYLS  346 (730)
Q Consensus       314 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (730)
                      .++.++.+|.|||.|.+|+.|++.|+|+++.++
T Consensus       397 ~~~~~~~~y~~~l~~~~~~~~~~~g~p~~~~~~  429 (429)
T TIGR03594       397 RPELLPFSYKRYLENQFREAFGFEGTPIRLEFK  429 (429)
T ss_pred             CcccCCHHHHHHHHHHHHHhcCCCcceEEEEeC
Confidence            999999999999999999999999999999885

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04175 Rap1 Rap1 subgroup

Probab=99.95  E-value=5.8e-27  Score=224.23  Aligned_cols=161  Identities=34%  Similarity=0.595  Sum_probs=140.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+++|++|||||||+++++++.+...+.||++..+ ...+.+++..+.+++|||+|++.+..++..+++++|++|+||
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            7999999999999999999999999888888887444 567888888899999999999999999999999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |++++.||+.+..|+..+....                              ..++.|+++||||+|+.+          
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~piilv~nK~Dl~~----------  120 (164)
T cd04175          81 SITAQSTFNDLQDLREQILRVK------------------------------DTEDVPMILVGNKCDLED----------  120 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEEECCcchh----------
Confidence            9999999999999999986542                              125678888999999853          


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA  247 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~  247 (730)
                                                              ++.++.+++..+++.++++|++|||++|.||+++|.++++
T Consensus       121 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  160 (164)
T cd04175         121 ----------------------------------------ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVR  160 (164)
T ss_pred             ----------------------------------------ccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence                                                    1345567778889889999999999999999999999987


Q ss_pred             HH
Q psy17467        248 EL  249 (730)
Q Consensus       248 ~l  249 (730)
                      .+
T Consensus       161 ~l  162 (164)
T cd04175         161 QI  162 (164)
T ss_pred             Hh
Confidence            65

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04134 Rho3 Rho3 subfamily

Probab=99.95  E-value=7e-27  Score=231.45  Aligned_cols=171  Identities=31%  Similarity=0.528  Sum_probs=142.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEee
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYD   88 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyD   88 (730)
                      ||+++|++|||||||+++|.++.|...+.||++.++ ...+.+++..+.++||||+|++.+..++..+++++|++|+|||
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d   80 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS   80 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence            899999999999999999999999988889998554 4567778888999999999999999999999999999999999


Q ss_pred             cCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         89 ISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        89 vtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      ++++.||+.+. .|+..+....                                ++.|+++||||+|+.+.......   
T Consensus        81 v~~~~sf~~~~~~~~~~i~~~~--------------------------------~~~piilvgNK~Dl~~~~~~~~~---  125 (189)
T cd04134          81 VDSPDSLENVESKWLGEIREHC--------------------------------PGVKLVLVALKCDLREARNERDD---  125 (189)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEEChhhccChhhHHH---
Confidence            99999999986 5988886432                                46899999999999753221000   


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC-CeEEEEecCCCCChHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg-~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                           .            .+  ...+.++.+++.++++..+ +.|+||||++|.||+++|++++
T Consensus       126 ---------------------~------------~~--~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~  170 (189)
T cd04134         126 ---------------------L------------QR--YGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAA  170 (189)
T ss_pred             ---------------------H------------hh--ccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHH
Confidence                                 0            00  1224577889999998887 6899999999999999999999


Q ss_pred             HHHH
Q psy17467        247 AELM  250 (730)
Q Consensus       247 ~~l~  250 (730)
                      +.+.
T Consensus       171 ~~~~  174 (189)
T cd04134         171 RVAL  174 (189)
T ss_pred             HHHh
Confidence            8874

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PLN03108 Rab family protein; Provisional

Probab=99.95  E-value=1.4e-26  Score=233.82  Aligned_cols=173  Identities=46%  Similarity=0.839  Sum_probs=152.7

Q ss_pred             CCCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccc
Q psy17467          1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSA   80 (730)
Q Consensus         1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~A   80 (730)
                      |+ +++.+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+++|||+|++.+..++..+++++
T Consensus         1 ~~-~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~a   79 (210)
T PLN03108          1 MS-YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGA   79 (210)
T ss_pred             CC-CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccC
Confidence            44 56789999999999999999999999999888889999999888899999899999999999999999999999999


Q ss_pred             cEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhH
Q psy17467         81 HALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEH  160 (730)
Q Consensus        81 DaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~  160 (730)
                      |++|+|||++++.||+.+..|+..+....                               .++.|+++|+||+|+.+   
T Consensus        80 d~~vlv~D~~~~~s~~~l~~~~~~~~~~~-------------------------------~~~~piiiv~nK~Dl~~---  125 (210)
T PLN03108         80 AGALLVYDITRRETFNHLASWLEDARQHA-------------------------------NANMTIMLIGNKCDLAH---  125 (210)
T ss_pred             CEEEEEEECCcHHHHHHHHHHHHHHHHhc-------------------------------CCCCcEEEEEECccCcc---
Confidence            99999999999999999999998875532                               14677888888888742   


Q ss_pred             HHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHH
Q psy17467        161 VLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEK  240 (730)
Q Consensus       161 ~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVee  240 (730)
                                                                     .+.++.++++++++.++++|+++||++|.||++
T Consensus       126 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e  158 (210)
T PLN03108        126 -----------------------------------------------RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE  158 (210)
T ss_pred             -----------------------------------------------ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence                                                           246778899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy17467        241 LFMQIAAELMEKLAE  255 (730)
Q Consensus       241 LFe~Li~~l~e~~~~  255 (730)
                      +|+++++.+......
T Consensus       159 ~f~~l~~~~~~~~~~  173 (210)
T PLN03108        159 AFIKTAAKIYKKIQD  173 (210)
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999988765543

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.95  E-value=6.3e-27  Score=225.72  Aligned_cols=170  Identities=28%  Similarity=0.553  Sum_probs=143.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeec
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDI   89 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDv   89 (730)
                      |+|+|++|||||||+++|.++.+...+.|+.+.. +...+.+++..+.+++|||+|++++..++..+++++|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            6899999999999999999999988888888744 456778889899999999999999999999999999999999999


Q ss_pred             CCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHh
Q psy17467         90 SCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMV  168 (730)
Q Consensus        90 td~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~  168 (730)
                      ++++||+++. .|+..+....                                ++.|+++||||+|+.++.....     
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~--------------------------------~~~piilv~nK~Dl~~~~~~~~-----  122 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFC--------------------------------PNTPIILVGTKLDLREDKSTLR-----  122 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhC--------------------------------CCCCEEEEecChhhhhChhhhh-----
Confidence            9999999996 5998886532                                5789999999999975322110     


Q ss_pred             hhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHHHHHH
Q psy17467        169 FVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFMQIAA  247 (730)
Q Consensus       169 ~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe~Li~  247 (730)
                                                       .......+.++.+++.++++.+++ .|+||||++|.||+++|+.+++
T Consensus       123 ---------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~  169 (174)
T smart00174      123 ---------------------------------ELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIR  169 (174)
T ss_pred             ---------------------------------hhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHH
Confidence                                             011112356888999999999997 8999999999999999999998


Q ss_pred             HHH
Q psy17467        248 ELM  250 (730)
Q Consensus       248 ~l~  250 (730)
                      .+.
T Consensus       170 ~~~  172 (174)
T smart00174      170 AAL  172 (174)
T ss_pred             Hhc
Confidence            763

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04144 Ras2 Ras2 subfamily

Probab=99.95  E-value=6.7e-27  Score=231.50  Aligned_cols=166  Identities=29%  Similarity=0.475  Sum_probs=142.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEee
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYD   88 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyD   88 (730)
                      ||+|+|++|||||||+++|.++.|...+.|+++.. +...+.+++..+.+++|||+|++++..++..+++.+|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDS-YRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhh-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            68999999999999999999999988888888744 45567788888999999999999999999999999999999999


Q ss_pred             cCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHh
Q psy17467         89 ISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMV  168 (730)
Q Consensus        89 vtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~  168 (730)
                      ++++.||+.+..|+..+.....                            ...++.|+++||||+|+.+           
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~----------------------------~~~~~~piilvgNK~Dl~~-----------  120 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKD----------------------------ESAADVPIMIVGNKCDKVY-----------  120 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhc----------------------------ccCCCCCEEEEEEChhccc-----------
Confidence            9999999999999998865431                            0125678888888888842           


Q ss_pred             hhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHHH
Q psy17467        169 FVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE  248 (730)
Q Consensus       169 ~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~~  248 (730)
                                                             .+.++.+++.++++.+++.|++|||++|.||+++|+++++.
T Consensus       121 ---------------------------------------~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~  161 (190)
T cd04144         121 ---------------------------------------EREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRA  161 (190)
T ss_pred             ---------------------------------------cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHH
Confidence                                                   24567778888999999999999999999999999999988


Q ss_pred             HHHHH
Q psy17467        249 LMEKL  253 (730)
Q Consensus       249 l~e~~  253 (730)
                      +.+..
T Consensus       162 l~~~~  166 (190)
T cd04144         162 LRQQR  166 (190)
T ss_pred             HHHhh
Confidence            75433

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.95  E-value=1.1e-26  Score=220.71  Aligned_cols=158  Identities=38%  Similarity=0.667  Sum_probs=141.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeC--CeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN--NERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vd--g~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      +||+++|++|||||||+++++++.+...+.|+++.++....+.++  +..+.+++|||||++++..++..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999999988888999988877777777  778999999999999999999999999999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      |||+++++||+.+..|+..+....                                ++.|+++|+||.|+..        
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~--------------------------------~~~p~iiv~nK~Dl~~--------  120 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAEC--------------------------------GDIPMVLVQTKIDLLD--------  120 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEEChhccc--------
Confidence            999999999999999999886432                                4678888888888852        


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L  245 (730)
                                                                ++.++.+++..+++.++++++++||++|.|++++|++|
T Consensus       121 ------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  158 (162)
T cd04106         121 ------------------------------------------QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYL  158 (162)
T ss_pred             ------------------------------------------ccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence                                                      23567788999999999999999999999999999998


Q ss_pred             HH
Q psy17467        246 AA  247 (730)
Q Consensus       246 i~  247 (730)
                      ..
T Consensus       159 ~~  160 (162)
T cd04106         159 AE  160 (162)
T ss_pred             HH
Confidence            65

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd01866 Rab2 Rab2 subfamily

Probab=99.95  E-value=2.1e-26  Score=222.53  Aligned_cols=166  Identities=47%  Similarity=0.847  Sum_probs=148.8

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI   83 (730)
                      |++++||+|+|++|||||||+++++++.+...+.++.|.++....+.+++..+.+.+||++|++++..+...+++++|++
T Consensus         1 ~~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   80 (168)
T cd01866           1 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA   80 (168)
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence            56789999999999999999999999999888889999888888899999889999999999999999999999999999


Q ss_pred             EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      |+|||++++.||+++..|+.++.+..                               .++.|+++||||.|+.+      
T Consensus        81 l~v~d~~~~~s~~~~~~~~~~~~~~~-------------------------------~~~~pvivv~nK~Dl~~------  123 (168)
T cd01866          81 LLVYDITRRETFNHLTSWLEDARQHS-------------------------------NSNMTIMLIGNKCDLES------  123 (168)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhC-------------------------------CCCCcEEEEEECccccc------
Confidence            99999999999999999999987643                               15678888889988852      


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM  243 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe  243 (730)
                                                                  .+.++.++++.++...++.++|+||++|.||+++|.
T Consensus       124 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~  159 (168)
T cd01866         124 --------------------------------------------RREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFI  159 (168)
T ss_pred             --------------------------------------------ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence                                                        134667888889999999999999999999999999


Q ss_pred             HHHHHHH
Q psy17467        244 QIAAELM  250 (730)
Q Consensus       244 ~Li~~l~  250 (730)
                      .+++.+.
T Consensus       160 ~~~~~~~  166 (168)
T cd01866         160 NTAKEIY  166 (168)
T ss_pred             HHHHHHH
Confidence            9998774

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04176 Rap2 Rap2 subgroup

Probab=99.95  E-value=9.2e-27  Score=222.29  Aligned_cols=161  Identities=32%  Similarity=0.541  Sum_probs=140.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+++|++|||||||++++.++.+...+.||.+ +++...+.+++..+.++||||+|++++..++..+++++|++|+||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            7999999999999999999999999888888876 666778888998899999999999999999999999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |++++.||+++..|+..+.+..                              ...+.|+++||||+|+.+          
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piviv~nK~Dl~~----------  120 (163)
T cd04176          81 SLVNQQTFQDIKPMRDQIVRVK------------------------------GYEKVPIILVGNKVDLES----------  120 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEEECccchh----------
Confidence            9999999999999999886542                              115678888899998842          


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA  247 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~  247 (730)
                                                              ++.+..+++..+++..++++++|||++|.||+++|+++++
T Consensus       121 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04176         121 ----------------------------------------EREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVR  160 (163)
T ss_pred             ----------------------------------------cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence                                                    1345566788888888999999999999999999999986


Q ss_pred             HH
Q psy17467        248 EL  249 (730)
Q Consensus       248 ~l  249 (730)
                      .+
T Consensus       161 ~l  162 (163)
T cd04176         161 QM  162 (163)
T ss_pred             hc
Confidence            54

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.95  E-value=1.6e-26  Score=225.52  Aligned_cols=164  Identities=35%  Similarity=0.613  Sum_probs=143.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEee
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYD   88 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyD   88 (730)
                      ||+++|++|||||||+++|.++.|...|.||++.++..+.+.+++..+.+++|||+|++++..++..+++++|++|+|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999999999999989888888999999999999999999999999999999999999999


Q ss_pred             cCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHh
Q psy17467         89 ISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMV  168 (730)
Q Consensus        89 vtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~  168 (730)
                      +++++||+.+..|++++.+...                              ....|+++||||+|+.+..         
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~------------------------------~~~~~iilVgnK~Dl~~~~---------  122 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKEND------------------------------PSSVLLFLVGTKKDLSSPA---------  122 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcC------------------------------CCCCeEEEEEEChhcCccc---------
Confidence            9999999999999999865431                              1245778888999985310         


Q ss_pred             hhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHHH
Q psy17467        169 FVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE  248 (730)
Q Consensus       169 ~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~~  248 (730)
                                                             ...+..+++..+++.++++|++|||++|.||+++|+.+++.
T Consensus       123 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~  163 (170)
T cd04108         123 ---------------------------------------QYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAAL  163 (170)
T ss_pred             ---------------------------------------cccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence                                                   11345677888888899999999999999999999999987


Q ss_pred             HH
Q psy17467        249 LM  250 (730)
Q Consensus       249 l~  250 (730)
                      +.
T Consensus       164 ~~  165 (170)
T cd04108         164 TF  165 (170)
T ss_pred             HH
Confidence            74

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd01864 Rab19 Rab19 subfamily

Probab=99.95  E-value=1.6e-26  Score=221.73  Aligned_cols=163  Identities=52%  Similarity=0.896  Sum_probs=143.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      ++.+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+++|||||++.+...+..+++++|+++
T Consensus         1 ~~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l   80 (165)
T cd01864           1 DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI   80 (165)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence            35799999999999999999999999998888899988888888999998889999999999999999999999999999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      +|||++++.||+.+..|+..+....                               .++.|+++|+||+|+.+       
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~-------------------------------~~~~p~ivv~nK~Dl~~-------  122 (165)
T cd01864          81 IAYDITRRSSFESVPHWIEEVEKYG-------------------------------ASNVVLLLIGNKCDLEE-------  122 (165)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhC-------------------------------CCCCcEEEEEECccccc-------
Confidence            9999999999999999999986542                               14677888888888852       


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFM  243 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe  243 (730)
                                                                 .+.+..+++..+++..++ .++||||++|.|++++|+
T Consensus       123 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~  159 (165)
T cd01864         123 -------------------------------------------QREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFL  159 (165)
T ss_pred             -------------------------------------------ccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHH
Confidence                                                       234567788899998886 689999999999999999


Q ss_pred             HHHHH
Q psy17467        244 QIAAE  248 (730)
Q Consensus       244 ~Li~~  248 (730)
                      .+.+.
T Consensus       160 ~l~~~  164 (165)
T cd01864         160 LMATE  164 (165)
T ss_pred             HHHHh
Confidence            99864

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.95  E-value=6.3e-27  Score=234.85  Aligned_cols=177  Identities=23%  Similarity=0.334  Sum_probs=133.7

Q ss_pred             eeEEEEEcCCCCCHHHHHH-HHHcC-----CCCCCCCCccee-eEEEEE--------EEeCCeEEEEEEEeCCCchhhhh
Q psy17467          7 LFKVVLVGNAGVGKTCLVR-RFTQG-----VFPPGQGATIGV-DFMIKT--------VEINNERIKLQIWDTAGQERFRS   71 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLn-rLl~~-----~f~~~~~pTig~-d~~~~~--------i~vdg~~v~LqLwDTpG~e~~~s   71 (730)
                      .+||+++|++|||||||+. ++.++     .|...+.||++. +.+...        +.+++..+.++||||+|+++  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999995 66554     345677889863 333322        25788999999999999975  3


Q ss_pred             hhHhhhccccEEEEEeecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEec
Q psy17467         72 ITQSYYRSAHALILVYDISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALAS  150 (730)
Q Consensus        72 l~~~~~r~ADaIILVyDvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVG  150 (730)
                      +...++++||++|+|||++++.||+++. .|++++....                                ++.|+++||
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--------------------------------~~~piilvg  127 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--------------------------------PRVPVILVG  127 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEE
Confidence            5567899999999999999999999997 5998886532                                467889999


Q ss_pred             cCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEE
Q psy17467        151 DKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLET  230 (730)
Q Consensus       151 NK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEt  230 (730)
                      ||.||.+.....                           ......   .+.+.. ...+.|+.++++++|+.+|++|+||
T Consensus       128 NK~DL~~~~~~~---------------------------~~~~~~---~~~~~~-~~~~~V~~~e~~~~a~~~~~~~~E~  176 (195)
T cd01873         128 CKLDLRYADLDE---------------------------VNRARR---PLARPI-KNADILPPETGRAVAKELGIPYYET  176 (195)
T ss_pred             Echhccccccch---------------------------hhhccc---cccccc-ccCCccCHHHHHHHHHHhCCEEEEc
Confidence            999996421000                           000000   000111 0247899999999999999999999


Q ss_pred             ecCCCCChHHHHHHHHHH
Q psy17467        231 SAKASDNVEKLFMQIAAE  248 (730)
Q Consensus       231 SAktG~GVeeLFe~Li~~  248 (730)
                      ||++|.||+++|+.+++.
T Consensus       177 SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         177 SVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             CCCCCCCHHHHHHHHHHh
Confidence            999999999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.95  E-value=1.4e-26  Score=226.92  Aligned_cols=169  Identities=32%  Similarity=0.587  Sum_probs=143.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeC-CeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN-NERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vd-g~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      +||+|+|++|||||||+++|.++.+...+.|+++.++. ..+... +..+.+++|||+|++++..++..++++||++|+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYV-TNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeE-EEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            58999999999999999999999999888899886654 345554 7788999999999999999999999999999999


Q ss_pred             eecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         87 YDISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        87 yDvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      ||++++.||+++. .|+..+....                                ++.|+++||||+|+.+...     
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~--------------------------------~~~piilv~nK~Dl~~~~~-----  122 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFC--------------------------------PGTPIMLVGLKTDLRKDKN-----  122 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEeChhhhhCcc-----
Confidence            9999999999996 4888775432                                5688999999999853210     


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe~  244 (730)
                                                               ..+.++.+++++++..+++ ++++|||++|.||+++|+.
T Consensus       123 -----------------------------------------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~  161 (187)
T cd04132         123 -----------------------------------------LDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDT  161 (187)
T ss_pred             -----------------------------------------ccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHH
Confidence                                                     1246778899999999998 8999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy17467        245 IAAELMEKLAE  255 (730)
Q Consensus       245 Li~~l~e~~~~  255 (730)
                      +++.+......
T Consensus       162 l~~~~~~~~~~  172 (187)
T cd04132         162 AIEEALKKEGK  172 (187)
T ss_pred             HHHHHHhhhhh
Confidence            99988655443

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04116 Rab9 Rab9 subfamily

Probab=99.95  E-value=2.2e-26  Score=221.56  Aligned_cols=167  Identities=34%  Similarity=0.617  Sum_probs=145.1

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI   83 (730)
                      ++..+||+++|++|||||||+++|+++.+...+.+++|.++....+.+++..+.+++||++|++++..++..+++++|++
T Consensus         2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   81 (170)
T cd04116           2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC   81 (170)
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence            34679999999999999999999999999988889999888888889999999999999999999999999999999999


Q ss_pred             EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      |+|||++++.||+.+..|+.++......                           ....+.|+++||||+|+.       
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---------------------------~~~~~~piilv~nK~Dl~-------  127 (170)
T cd04116          82 LLTFAVDDSQSFQNLSNWKKEFIYYADV---------------------------KEPESFPFVVLGNKNDIP-------  127 (170)
T ss_pred             EEEEECCCHHHHHhHHHHHHHHHHhccc---------------------------ccCCCCcEEEEEECcccc-------
Confidence            9999999999999999999988654310                           011456777777777763       


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLF  242 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLF  242 (730)
                                                                  .+.++.++++++++.+++ ++++|||++|.||+++|
T Consensus       128 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~  163 (170)
T cd04116         128 --------------------------------------------ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAF  163 (170)
T ss_pred             --------------------------------------------ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHH
Confidence                                                        346777889999999885 89999999999999999


Q ss_pred             HHHHHH
Q psy17467        243 MQIAAE  248 (730)
Q Consensus       243 e~Li~~  248 (730)
                      +.+++.
T Consensus       164 ~~~~~~  169 (170)
T cd04116         164 EEAVRR  169 (170)
T ss_pred             HHHHhh
Confidence            999865

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>KOG0081|consensus

Probab=99.95  E-value=3.3e-28  Score=233.27  Aligned_cols=175  Identities=34%  Similarity=0.635  Sum_probs=158.9

Q ss_pred             CCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeC---------CeEEEEEEEeCCCchhhhhh
Q psy17467          2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN---------NERIKLQIWDTAGQERFRSI   72 (730)
Q Consensus         2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vd---------g~~v~LqLwDTpG~e~~~sl   72 (730)
                      -+|+|+||.+.+|++||||||++.+|+.++|.....+|+|+++..+.+.++         +..+.+++|||+|+++|+++
T Consensus         4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL   83 (219)
T KOG0081|consen    4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL   83 (219)
T ss_pred             ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence            478999999999999999999999999999999999999999999988884         45789999999999999999


Q ss_pred             hHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccC
Q psy17467         73 TQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDK  152 (730)
Q Consensus        73 ~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK  152 (730)
                      ...++++|-+++++||+|+..||.+++.|+.++..+.                              +.++.-||++|||
T Consensus        84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hA------------------------------YcE~PDivlcGNK  133 (219)
T KOG0081|consen   84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHA------------------------------YCENPDIVLCGNK  133 (219)
T ss_pred             HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhh------------------------------ccCCCCEEEEcCc
Confidence            9999999999999999999999999999999997654                              3356667788888


Q ss_pred             CCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEec
Q psy17467        153 TDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSA  232 (730)
Q Consensus       153 ~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSA  232 (730)
                      +||.+                                                  .|.|+++++.++|.++|++|+|+||
T Consensus       134 ~DL~~--------------------------------------------------~R~Vs~~qa~~La~kyglPYfETSA  163 (219)
T KOG0081|consen  134 ADLED--------------------------------------------------QRVVSEDQAAALADKYGLPYFETSA  163 (219)
T ss_pred             cchhh--------------------------------------------------hhhhhHHHHHHHHHHhCCCeeeecc
Confidence            88853                                                  4789999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHH
Q psy17467        233 KASDNVEKLFMQIAAELMEKLAEK  256 (730)
Q Consensus       233 ktG~GVeeLFe~Li~~l~e~~~~~  256 (730)
                      -+|.||++..+.++..++++..+-
T Consensus       164 ~tg~Nv~kave~LldlvM~Rie~~  187 (219)
T KOG0081|consen  164 CTGTNVEKAVELLLDLVMKRIEQC  187 (219)
T ss_pred             ccCcCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998876653

>cd04113 Rab4 Rab4 subfamily

Probab=99.95  E-value=2.2e-26  Score=219.21  Aligned_cols=160  Identities=43%  Similarity=0.801  Sum_probs=144.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+++||++|++.+...+..+++++|++|+||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999998888899998888888899998899999999999999999999999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |++++.+|+.+..|++.+....                               .++.|+++|+||+|+..          
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~-------------------------------~~~~~iivv~nK~D~~~----------  119 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALA-------------------------------SPNIVVILVGNKSDLAD----------  119 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-------------------------------CCCCeEEEEEEchhcch----------
Confidence            9999999999999999886542                               25678888899999852          


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA  247 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~  247 (730)
                                                              .+.++.+++..+++..++.++++||++|.|++++|+++++
T Consensus       120 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~  159 (161)
T cd04113         120 ----------------------------------------QREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCAR  159 (161)
T ss_pred             ----------------------------------------hccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence                                                    2356778899999999999999999999999999999987


Q ss_pred             H
Q psy17467        248 E  248 (730)
Q Consensus       248 ~  248 (730)
                      .
T Consensus       160 ~  160 (161)
T cd04113         160 S  160 (161)
T ss_pred             h
Confidence            5

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04124 RabL2 RabL2 subfamily

Probab=99.94  E-value=3.1e-26  Score=220.16  Aligned_cols=160  Identities=34%  Similarity=0.604  Sum_probs=139.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+++|++|||||||+++|.++.+.+.+.++.+.+.....+.+++..+.+++|||+|++.+..++..+++++|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999998888888887777778888898999999999999999999999999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |++++.+|+++..|+..+.+..                                ++.|+++|+||+|+...         
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~--------------------------------~~~p~ivv~nK~Dl~~~---------  119 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYR--------------------------------PEIPCIVVANKIDLDPS---------  119 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC--------------------------------CCCcEEEEEECccCchh---------
Confidence            9999999999999999986532                                46788888999988421         


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA  247 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~  247 (730)
                                                                  ..+++..+++..++++++|||++|.|++++|+.+++
T Consensus       120 --------------------------------------------~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  155 (161)
T cd04124         120 --------------------------------------------VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIK  155 (161)
T ss_pred             --------------------------------------------HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence                                                        113455667777899999999999999999999998


Q ss_pred             HHHHH
Q psy17467        248 ELMEK  252 (730)
Q Consensus       248 ~l~e~  252 (730)
                      .+.++
T Consensus       156 ~~~~~  160 (161)
T cd04124         156 LAVSY  160 (161)
T ss_pred             HHHhc
Confidence            87553

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04125 RabA_like RabA-like subfamily

Probab=99.94  E-value=4.9e-26  Score=224.17  Aligned_cols=165  Identities=45%  Similarity=0.793  Sum_probs=146.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+|+|++|||||||+++|.++.|...+.++++.++....+.+++..+.+++||++|++.+..++..+++++|++|+||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999998878899998888888889888899999999999999999999999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |++++.||+.+..|+.++.....                               .+.|+++||||+|+.+          
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~-------------------------------~~~~~ivv~nK~Dl~~----------  119 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYAR-------------------------------ENVIKVIVANKSDLVN----------  119 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCC-------------------------------CCCeEEEEEECCCCcc----------
Confidence            99999999999999999876431                               3467788888888752          


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA  247 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~  247 (730)
                                                              .+.++.+++..+++..++++++|||++|.||+++|+++++
T Consensus       120 ----------------------------------------~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~  159 (188)
T cd04125         120 ----------------------------------------NKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVK  159 (188)
T ss_pred             ----------------------------------------cccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence                                                    2456778888999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy17467        248 ELMEKL  253 (730)
Q Consensus       248 ~l~e~~  253 (730)
                      .+..+.
T Consensus       160 ~~~~~~  165 (188)
T cd04125         160 LIIKRL  165 (188)
T ss_pred             HHHHHh
Confidence            986543

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04140 ARHI_like ARHI subfamily

Probab=99.94  E-value=3.2e-26  Score=220.31  Aligned_cols=161  Identities=29%  Similarity=0.456  Sum_probs=138.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+++|++|||||||+++++++.|...+.|+.+.. +...+..++..+.+++|||+|++++..++..+++.+|++|+||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT-YRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchhe-EEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            799999999999999999999999988888888743 3556677788899999999999999999999999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |+++++||+.+..|++.+.....                            ...++.|+++||||.|+..          
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~----------------------------~~~~~~piilv~nK~Dl~~----------  122 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKG----------------------------NNIEKIPIMLVGNKCDESH----------  122 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhc----------------------------CCCCCCCEEEEEECccccc----------
Confidence            99999999999999988865431                            0125678888888888742          


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA  247 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~  247 (730)
                                                              .+.+..+++..++...++.|+||||++|.||+++|++|++
T Consensus       123 ----------------------------------------~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~  162 (165)
T cd04140         123 ----------------------------------------KREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLN  162 (165)
T ss_pred             ----------------------------------------cCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHh
Confidence                                                    2456677888899989999999999999999999999875

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04118 Rab24 Rab24 subfamily

Probab=99.94  E-value=3.9e-26  Score=225.10  Aligned_cols=167  Identities=33%  Similarity=0.582  Sum_probs=145.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPP-GQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~-~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      +||+|+|++|||||||+++|+++.+.. .+.+|++.++....+.+++..+.+++||++|++++..++..+++++|++|+|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999999875 5788998888888899999999999999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||++++.||+++..|++.+....                                ++.|+++|+||+|+.+...      
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~--------------------------------~~~piilv~nK~Dl~~~~~------  122 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLE--------------------------------EHCKIYLCGTKSDLIEQDR------  122 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcC--------------------------------CCCCEEEEEEccccccccc------
Confidence            99999999999999999886432                                4678999999999853110      


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                                              ..+.+..+++.+++...+++++++||++|.||+++|+.++
T Consensus       123 ----------------------------------------~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~  162 (193)
T cd04118         123 ----------------------------------------SLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVA  162 (193)
T ss_pred             ----------------------------------------ccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence                                                    1245667788889999999999999999999999999999


Q ss_pred             HHHHHH
Q psy17467        247 AELMEK  252 (730)
Q Consensus       247 ~~l~e~  252 (730)
                      +.+.+.
T Consensus       163 ~~~~~~  168 (193)
T cd04118         163 EDFVSR  168 (193)
T ss_pred             HHHHHh
Confidence            988643

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.94  E-value=4.5e-26  Score=214.98  Aligned_cols=160  Identities=31%  Similarity=0.515  Sum_probs=138.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+++|++|||||||+++|+++.+...+.|+.+. .+...+.+++..+.+++|||+|++++..++..+++++|++++||
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchh-eEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            79999999999999999999999998888888874 44667788888889999999999999999999999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |++++.+|+++..|+..+.+..                              ..++.|+++|+||+|+.+          
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~piivv~nK~Dl~~----------  120 (162)
T cd04138          81 AINSRKSFEDIHTYREQIKRVK------------------------------DSDDVPMVLVGNKCDLAA----------  120 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEEECccccc----------
Confidence            9999999999999999886543                              124667788888888742          


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA  247 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~  247 (730)
                                                               +.+..+++.++++..++++++|||++|.||+++|+++++
T Consensus       121 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (162)
T cd04138         121 -----------------------------------------RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR  159 (162)
T ss_pred             -----------------------------------------ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence                                                     345667788888889999999999999999999999986


Q ss_pred             HH
Q psy17467        248 EL  249 (730)
Q Consensus       248 ~l  249 (730)
                      .+
T Consensus       160 ~~  161 (162)
T cd04138         160 EI  161 (162)
T ss_pred             Hh
Confidence            54

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.94  E-value=4.1e-26  Score=217.65  Aligned_cols=162  Identities=34%  Similarity=0.573  Sum_probs=140.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+|+|++|||||||+++++++.+...+.|+.+ +.+...+.+++..+.+++|||+|++++..++..+++++|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999999999888888876 555677788888899999999999999999999999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |++++++|+.+..|+..+.+...                              ..+.|+++||||+|+.+          
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~------------------------------~~~~pii~v~nK~Dl~~----------  119 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKD------------------------------RDDVPIVLVGNKCDLES----------  119 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcC------------------------------CCCCCEEEEEECccccc----------
Confidence            99999999999999988765421                              13578888888888752          


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA  247 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~  247 (730)
                                                              .+.++.+++..+++..+++|++|||++|.|++++|+++++
T Consensus       120 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173      120 ----------------------------------------ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             ----------------------------------------cceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence                                                    1345667888889989999999999999999999999998


Q ss_pred             HHH
Q psy17467        248 ELM  250 (730)
Q Consensus       248 ~l~  250 (730)
                      .+.
T Consensus       160 ~~~  162 (164)
T smart00173      160 EIR  162 (164)
T ss_pred             HHh
Confidence            763

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.94  E-value=5.9e-26  Score=219.83  Aligned_cols=163  Identities=48%  Similarity=0.867  Sum_probs=144.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh-hhhHhhhccccEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR-SITQSYYRSAHALIL   85 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~-sl~~~~~r~ADaIIL   85 (730)
                      .+||+++|++|||||||+++++++.+...+.++++.++..+.+.+++..+.+++|||+|++++. .++..+++++|++|+
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            5899999999999999999999999988888999988888889999999999999999999886 578889999999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      |||++++.||+.+..|+..+....                              ...+.|+++|+||+|+..        
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~p~iiv~nK~Dl~~--------  123 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHS------------------------------LPNEVPRILVGNKCDLRE--------  123 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhc------------------------------CCCCCCEEEEEECccchh--------
Confidence            999999999999999999987643                              125678888889988852        


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCC---CCChHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKA---SDNVEKLF  242 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAkt---G~GVeeLF  242 (730)
                                                                .++++.++++++++..+++|+||||++   +.||+++|
T Consensus       124 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f  161 (170)
T cd04115         124 ------------------------------------------QIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF  161 (170)
T ss_pred             ------------------------------------------hcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence                                                      246778889999999999999999999   89999999


Q ss_pred             HHHHHHH
Q psy17467        243 MQIAAEL  249 (730)
Q Consensus       243 e~Li~~l  249 (730)
                      ..+++.+
T Consensus       162 ~~l~~~~  168 (170)
T cd04115         162 MTLAHKL  168 (170)
T ss_pred             HHHHHHh
Confidence            9998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.94  E-value=5.8e-26  Score=215.87  Aligned_cols=162  Identities=31%  Similarity=0.541  Sum_probs=139.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||+++|++|||||||+++++++.+...+.++.+ +.......+++..+.+++|||||++++..++..+++++|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcc-ceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            48999999999999999999999988877878877 44456677888889999999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||++++.+|+.+..|+..+.+..                              ...+.|+++++||+|+..         
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piiiv~NK~Dl~~---------  121 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVK------------------------------DRDEFPMILVGNKADLEH---------  121 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHh------------------------------CCCCCCEEEEeeCccccc---------
Confidence            99999999999999999886542                              124678888888888852         


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                                               .+.++.+++.++++..++++++|||++|.||+++|+.++
T Consensus       122 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145         122 -----------------------------------------QRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             -----------------------------------------cceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence                                                     134566778889999999999999999999999999998


Q ss_pred             HHH
Q psy17467        247 AEL  249 (730)
Q Consensus       247 ~~l  249 (730)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04145         161 RVI  163 (164)
T ss_pred             Hhh
Confidence            764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.94  E-value=4.3e-26  Score=221.41  Aligned_cols=169  Identities=25%  Similarity=0.446  Sum_probs=142.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+++|++|||||||+.++.++.|...+.||.. +.+...+.+++..+.+++|||+|++++..++..+++++|++|+||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            6899999999999999999999999888888774 666677888988899999999999999999999999999999999


Q ss_pred             ecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         88 DISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        88 Dvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      |++++.||+.+. .|+..+....                                ++.|+++||||+|+.+.....    
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~--------------------------------~~~piilv~nK~Dl~~~~~~~----  123 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHN--------------------------------PKAPIILVGTQADLRTDVNVL----  123 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC--------------------------------CCCCEEEEeeChhhccChhHH----
Confidence            999999999985 6888876421                                467899999999996432210    


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe~L  245 (730)
                                                        .+......+.+..++++.+++..++ .|+||||++|.||+++|+.+
T Consensus       124 ----------------------------------~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~  169 (173)
T cd04130         124 ----------------------------------IQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTA  169 (173)
T ss_pred             ----------------------------------HHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHH
Confidence                                              1111223478889999999999998 89999999999999999988


Q ss_pred             HH
Q psy17467        246 AA  247 (730)
Q Consensus       246 i~  247 (730)
                      +-
T Consensus       170 ~~  171 (173)
T cd04130         170 IL  171 (173)
T ss_pred             Hh
Confidence            64

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.94  E-value=2.8e-26  Score=221.86  Aligned_cols=156  Identities=23%  Similarity=0.381  Sum_probs=130.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+++|++|||||||+.+|+++.|...+.|+.+ .+ ...+.+++..+.+++|||+|++.     ..+++++|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-RF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-ce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            5899999999999999999999998877655533 44 57788999999999999999974     35678999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |++|+.||+++..|++++.....                              .++.|+++||||.|+...         
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~------------------------------~~~~piilvgnK~Dl~~~---------  114 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRN------------------------------ISEIPLILVGTQDAISES---------  114 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcC------------------------------CCCCCEEEEeeHHHhhhc---------
Confidence            99999999999999999876431                              256788888998887420         


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc-CCeEEEEecCCCCChHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH-DMYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l-g~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                                             ..+.++.++++++++.. ++.|+||||++|.||+++|+.++
T Consensus       115 ---------------------------------------~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~  155 (158)
T cd04103         115 ---------------------------------------NPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAA  155 (158)
T ss_pred             ---------------------------------------CCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHH
Confidence                                                   23578889999999877 58999999999999999999998


Q ss_pred             HH
Q psy17467        247 AE  248 (730)
Q Consensus       247 ~~  248 (730)
                      +.
T Consensus       156 ~~  157 (158)
T cd04103         156 QK  157 (158)
T ss_pred             hh
Confidence            54

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.94  E-value=4.7e-26  Score=229.81  Aligned_cols=155  Identities=30%  Similarity=0.607  Sum_probs=137.3

Q ss_pred             EcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCC
Q psy17467         13 VGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQ   92 (730)
Q Consensus        13 LG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~   92 (730)
                      ||++|||||||+++|+++.|...+.||+|.++....+.+++..+.++||||+|++++..++..+++++|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999999888899999999888899999999999999999999999999999999999999999999


Q ss_pred             CchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhh
Q psy17467         93 PTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAV  172 (730)
Q Consensus        93 eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~  172 (730)
                      .||+.+..|++++.+..                                +++|++|||||+|+..               
T Consensus        81 ~S~~~i~~w~~~i~~~~--------------------------------~~~piilvgNK~Dl~~---------------  113 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC--------------------------------ENIPIVLCGNKVDVKD---------------  113 (200)
T ss_pred             HHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEECccccc---------------
Confidence            99999999999997643                                4678888888888742               


Q ss_pred             cccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHHHHHH
Q psy17467        173 CIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME  251 (730)
Q Consensus       173 ~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~~l~e  251 (730)
                                                          +.+..+. ..+++..++.|+||||++|.||+++|+++++.+.+
T Consensus       114 ------------------------------------~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~  155 (200)
T smart00176      114 ------------------------------------RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG  155 (200)
T ss_pred             ------------------------------------ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence                                                2344333 46788889999999999999999999999988743

Ran is involved in the active transport of proteins through nuclear pores.

>cd04112 Rab26 Rab26 subfamily

Probab=99.94  E-value=8.4e-26  Score=223.86  Aligned_cols=164  Identities=49%  Similarity=0.824  Sum_probs=144.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPP-GQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~-~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      +||+++|++|||||||+++|.++.+.. .+.++++.++....+.+++..+.++||||||++++..++..+++++|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999999864 5778888888777888999999999999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||++++.||+++..|+..+.....                               .+.|+++||||+|+..         
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~-------------------------------~~~piiiv~NK~Dl~~---------  120 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQ-------------------------------EDVVIMLLGNKADMSG---------  120 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCC-------------------------------CCCcEEEEEEcccchh---------
Confidence            999999999999999999876431                               3567888888888742         


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                                               .+.+..++++.+++.++++|+||||++|.||+++|++|+
T Consensus       121 -----------------------------------------~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~  159 (191)
T cd04112         121 -----------------------------------------ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVA  159 (191)
T ss_pred             -----------------------------------------ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence                                                     245667888999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy17467        247 AELMEK  252 (730)
Q Consensus       247 ~~l~e~  252 (730)
                      +.+...
T Consensus       160 ~~~~~~  165 (191)
T cd04112         160 KELKHR  165 (191)
T ss_pred             HHHHHh
Confidence            888544

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0097|consensus

Probab=99.94  E-value=4.2e-26  Score=215.23  Aligned_cols=173  Identities=39%  Similarity=0.794  Sum_probs=158.9

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      +|.+.+|-+|+|+-|||||+|+.+|+..+|...-..|+|+++..+.+++.|+.+++++|||+|+++|+.+.+.||+.|-+
T Consensus         7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag   86 (215)
T KOG0097|consen    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   86 (215)
T ss_pred             chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence            45688999999999999999999999999999988999999999999999999999999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      .++|||++.+.++..+..|+.+.+..                               .+|+..++++|||.||.      
T Consensus        87 almvyditrrstynhlsswl~dar~l-------------------------------tnpnt~i~lignkadle------  129 (215)
T KOG0097|consen   87 ALMVYDITRRSTYNHLSSWLTDARNL-------------------------------TNPNTVIFLIGNKADLE------  129 (215)
T ss_pred             eeEEEEehhhhhhhhHHHHHhhhhcc-------------------------------CCCceEEEEecchhhhh------
Confidence            99999999999999999999997653                               35888888889988885      


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF  242 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF  242 (730)
                                                                  .+|.|+.+++.+++++.|..|+|+|||+|.||++.|
T Consensus       130 --------------------------------------------~qrdv~yeeak~faeengl~fle~saktg~nvedaf  165 (215)
T KOG0097|consen  130 --------------------------------------------SQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAF  165 (215)
T ss_pred             --------------------------------------------hcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHH
Confidence                                                        347899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy17467        243 MQIAAELMEKLAEK  256 (730)
Q Consensus       243 e~Li~~l~e~~~~~  256 (730)
                      -...+.+.+.....
T Consensus       166 le~akkiyqniqdg  179 (215)
T KOG0097|consen  166 LETAKKIYQNIQDG  179 (215)
T ss_pred             HHHHHHHHHhhhcC
Confidence            99988887665553

>cd04135 Tc10 TC10 subfamily

Probab=99.94  E-value=8e-26  Score=218.03  Aligned_cols=171  Identities=26%  Similarity=0.521  Sum_probs=142.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+++|++|||||||+++|.++.+...+.|+.+ +.+...+.+++..+.+++|||+|++.+..++..+++++|++|+||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            5899999999999999999999999888888876 455567788888899999999999999999999999999999999


Q ss_pred             ecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         88 DISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        88 Dvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      |++++.||+++. .|++.+...                                .++.|+++||||+|+.+......   
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~--------------------------------~~~~piivv~nK~Dl~~~~~~~~---  124 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY--------------------------------APNVPYLLVGTQIDLRDDPKTLA---  124 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh--------------------------------CCCCCEEEEeEchhhhcChhhHH---
Confidence            999999999996 588777543                                26789999999999864321100   


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe~L  245 (730)
                                                         +......+.++.+++..+++..|+ .|+||||++|.||+++|+.+
T Consensus       125 -----------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~  169 (174)
T cd04135         125 -----------------------------------RLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEA  169 (174)
T ss_pred             -----------------------------------HHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHH
Confidence                                               011123467888999999999997 79999999999999999999


Q ss_pred             HHHH
Q psy17467        246 AAEL  249 (730)
Q Consensus       246 i~~l  249 (730)
                      ++.+
T Consensus       170 ~~~~  173 (174)
T cd04135         170 ILAI  173 (174)
T ss_pred             HHHh
Confidence            8865

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.94  E-value=2.9e-26  Score=254.72  Aligned_cols=247  Identities=17%  Similarity=0.101  Sum_probs=184.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh----------hh-
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS----------IT-   73 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s----------l~-   73 (730)
                      ..++|+++|.+|||||||++++++... .....+..+.+.....+..++  ..+.+|||||..+...          .. 
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            458999999999999999999997653 334445555555555555666  5578999999643221          11 


Q ss_pred             HhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCC
Q psy17467         74 QSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKT  153 (730)
Q Consensus        74 ~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~  153 (730)
                      ..+++.+|++|+|+|++++.+.++.. ++..+.                                  ..+.|+++|+||+
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~----------------------------------~~~~~~ivv~NK~  294 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDLR-IAGLAL----------------------------------EAGRALVIVVNKW  294 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHH----------------------------------HcCCcEEEEEECc
Confidence            24678999999999999988776653 222221                                  1357889999999


Q ss_pred             CcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecC
Q psy17467        154 DLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAK  233 (730)
Q Consensus       154 DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAk  233 (730)
                      |+.+.+..                                               ..+..+....+.....++++++||+
T Consensus       295 Dl~~~~~~-----------------------------------------------~~~~~~~~~~l~~~~~~~i~~~SA~  327 (435)
T PRK00093        295 DLVDEKTM-----------------------------------------------EEFKKELRRRLPFLDYAPIVFISAL  327 (435)
T ss_pred             cCCCHHHH-----------------------------------------------HHHHHHHHHhcccccCCCEEEEeCC
Confidence            98632210                                               0011111222333335789999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHHhhcCCCCceeeec
Q psy17467        234 ASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNIDIKSVS  313 (730)
Q Consensus       234 tG~GVeeLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~~k~~p~~~~~~~~  313 (730)
                      +|.||+++|+.+.+....+..+.++...+++...+           ...++||...++..+..|++|.+..||.|+.+++
T Consensus       328 ~~~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~-----------~~~~~~p~~~~~~~k~~~~~q~~~~pp~f~~~~n  396 (435)
T PRK00093        328 TGQGVDKLLEAIDEAYENANRRISTSVLNRVLEEA-----------VERHPPPLVKGRRLKIKYATQVGTNPPTFVLFVN  396 (435)
T ss_pred             CCCCHHHHHHHHHHHHHHHcCcCChHHHHHHHHHH-----------HHcCCCCCCCCeeeeEEEEEcCCCCCCEEEEEeC
Confidence            99999999999998887776666666555555544           3345677778888999999999999999999999


Q ss_pred             cccccchhhHHHhHhhhhhhhccCCceeEEEeec
Q psy17467        314 GISQIRSDIVKSLSLYYYTFVDLLHFKDCVYLSG  347 (730)
Q Consensus       314 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (730)
                      ..+.++.+|.|||.+.+|+.|++.|+|+++.++.
T Consensus       397 ~~~~~~~~y~~~l~~~~r~~~~~~g~p~~~~~~~  430 (435)
T PRK00093        397 DPELLPFSYKRYLENQLREAFDFEGTPIRLEFRE  430 (435)
T ss_pred             CcccCCHHHHHHHHHHHHHHcCCCcccEEEEEec
Confidence            9999999999999999999999999999999986

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.94  E-value=1.5e-25  Score=217.32  Aligned_cols=159  Identities=32%  Similarity=0.636  Sum_probs=139.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+++|++|||||||+++++++.+...+.||++.++....+..++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888899998888888888888999999999999999999999999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |+++++||+.+..|+.++.+..                                .+.|+++||||+|+.+          
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~--------------------------------~~~piiiv~nK~Dl~~----------  118 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVC--------------------------------GNIPIVLCGNKVDIKD----------  118 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC--------------------------------CCCcEEEEEEchhccc----------
Confidence            9999999999999999987653                                2678888888888852          


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA  247 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~  247 (730)
                                                               +.+. .++.++++..++.++||||++|.||+++|+++++
T Consensus       119 -----------------------------------------~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~  156 (166)
T cd00877         119 -----------------------------------------RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLAR  156 (166)
T ss_pred             -----------------------------------------ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHH
Confidence                                                     1222 2345677777889999999999999999999998


Q ss_pred             HHH
Q psy17467        248 ELM  250 (730)
Q Consensus       248 ~l~  250 (730)
                      .+.
T Consensus       157 ~~~  159 (166)
T cd00877         157 KLL  159 (166)
T ss_pred             HHH
Confidence            874

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04126 Rab20 Rab20 subfamily

Probab=99.94  E-value=1.6e-25  Score=229.32  Aligned_cols=182  Identities=31%  Similarity=0.493  Sum_probs=143.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+|+|++|||||||+++|+++.|.. +.||++.++....+    ..+.+.||||+|++.+..++..+++++|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999999875 56888876654433    4588999999999999999999999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |+++++||+++..|+..+.+..                               .++.|++|||||+|+.++...      
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~-------------------------------~~~~piIlVgNK~DL~~~~~~------  118 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTA-------------------------------NEDCLFAVVGNKLDLTEEGAL------  118 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhc-------------------------------CCCCcEEEEEECccccccccc------
Confidence            9999999999998888775432                               256789999999999752210      


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC--------------CeEEEEecC
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD--------------MYYLETSAK  233 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg--------------~~fvEtSAk  233 (730)
                                            +++...+.-.+.|   ...+.++.++++.+|+..+              ++|+||||+
T Consensus       119 ----------------------~~~~~~~~~~~~~---~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~  173 (220)
T cd04126         119 ----------------------AGQEKDAGDRVSP---EDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAK  173 (220)
T ss_pred             ----------------------ccccccccccccc---cccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCC
Confidence                                  0000000000111   1247899999999999887              689999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHH
Q psy17467        234 ASDNVEKLFMQIAAELMEKLAEK  256 (730)
Q Consensus       234 tG~GVeeLFe~Li~~l~e~~~~~  256 (730)
                      +|.||+++|..+++.+.....+.
T Consensus       174 tg~~V~elf~~i~~~~~~~~~~~  196 (220)
T cd04126         174 TGYNVDELFEYLFNLVLPLILAQ  196 (220)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999887655444

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.94  E-value=2e-25  Score=212.86  Aligned_cols=160  Identities=29%  Similarity=0.584  Sum_probs=138.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCCcceeeEEEEEEEeC-CeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQG--VFPPGQGATIGVDFMIKTVEIN-NERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~--~f~~~~~pTig~d~~~~~i~vd-g~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      +||+++|++|||||||++++.++  .+...+.++.|.++....+.++ +..+.+.+|||+|++.+..++..+++++|++|
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  6888888999988877777775 56799999999999999999999999999999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      +|||++++++|+.+..|++.+....                                ++.|+++||||+|+.+       
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~--------------------------------~~~p~ilv~nK~Dl~~-------  121 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS--------------------------------KHMPGVLVGNKMDLAD-------  121 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEECccccc-------
Confidence            9999999999999999999886532                                4578888888888742       


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~  244 (730)
                                                                 .+.+..++++.++...++++++|||++|.||+++|+.
T Consensus       122 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  158 (164)
T cd04101         122 -------------------------------------------KAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFES  158 (164)
T ss_pred             -------------------------------------------ccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHH
Confidence                                                       2345666777888888999999999999999999999


Q ss_pred             HHHHH
Q psy17467        245 IAAEL  249 (730)
Q Consensus       245 Li~~l  249 (730)
                      +++.+
T Consensus       159 l~~~~  163 (164)
T cd04101         159 LARAF  163 (164)
T ss_pred             HHHHh
Confidence            98764

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>KOG0393|consensus

Probab=99.94  E-value=1.4e-26  Score=232.14  Aligned_cols=175  Identities=28%  Similarity=0.490  Sum_probs=154.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeC-CeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN-NERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vd-g~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      ..+|++|||+.+||||+|+..|+.+.|+..|.||+- +-+...+.++ |+.+.+.+|||+|+++|+.++...|.++|+|+
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            458999999999999999999999999999999997 7788899995 99999999999999999999999999999999


Q ss_pred             EEeecCCCCchhhhHH-HHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         85 LVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~-wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      +||++.+++||+++.+ |+.++.+++                                |+.|++|||+|.||+++.....
T Consensus        82 ~cfsv~~p~S~~nv~~kW~pEi~~~c--------------------------------p~vpiiLVGtk~DLr~d~~~~~  129 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKSKWIPEIKHHC--------------------------------PNVPIILVGTKADLRDDPSTLE  129 (198)
T ss_pred             EEEEcCChhhHHHHHhhhhHHHHhhC--------------------------------CCCCEEEEeehHHhhhCHHHHH
Confidence            9999999999999865 999998876                                8899999999999996543322


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLF  242 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLF  242 (730)
                      .+.-                                  +    ....|+.++++.+|+.+|+ .|+||||++..|+.++|
T Consensus       130 ~l~~----------------------------------~----~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF  171 (198)
T KOG0393|consen  130 KLQR----------------------------------Q----GLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVF  171 (198)
T ss_pred             HHHh----------------------------------c----cCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHH
Confidence            1110                                  1    2347899999999999995 79999999999999999


Q ss_pred             HHHHHHHHH
Q psy17467        243 MQIAAELME  251 (730)
Q Consensus       243 e~Li~~l~e  251 (730)
                      +.+++..+.
T Consensus       172 ~~a~~~~l~  180 (198)
T KOG0393|consen  172 DEAIRAALR  180 (198)
T ss_pred             HHHHHHHhc
Confidence            999988854

>cd04142 RRP22 RRP22 subfamily

Probab=99.94  E-value=1.1e-25  Score=226.06  Aligned_cols=166  Identities=25%  Similarity=0.326  Sum_probs=136.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh--------hhHhhhcc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS--------ITQSYYRS   79 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s--------l~~~~~r~   79 (730)
                      +||+|+|++|||||||+++|+++.|...+.|+++.+.+...+.+++..+.+++|||+|...+..        ....++++
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999999999888889998777777888899999999999999654321        13345789


Q ss_pred             ccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhh
Q psy17467         80 AHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDE  159 (730)
Q Consensus        80 ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e  159 (730)
                      ||++|+|||++++.||+.+..|++.+.+...                            ...++.|+++||||+|+.+  
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~----------------------------~~~~~~piiivgNK~Dl~~--  130 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRP----------------------------AGNKEPPIVVVGNKRDQQR--  130 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcc----------------------------cCCCCCCEEEEEECccccc--
Confidence            9999999999999999999999998876431                            0135678888899999852  


Q ss_pred             HHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH-hcCCeEEEEecCCCCCh
Q psy17467        160 HVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK-RHDMYYLETSAKASDNV  238 (730)
Q Consensus       160 ~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak-~lg~~fvEtSAktG~GV  238 (730)
                                                                      .+.++.++++.++. .++++|+||||++|.||
T Consensus       131 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v  162 (198)
T cd04142         131 ------------------------------------------------HRFAPRHVLSVLVRKSWKCGYLECSAKYNWHI  162 (198)
T ss_pred             ------------------------------------------------cccccHHHHHHHHHHhcCCcEEEecCCCCCCH
Confidence                                                            13456667777754 56899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy17467        239 EKLFMQIAAELME  251 (730)
Q Consensus       239 eeLFe~Li~~l~e  251 (730)
                      +++|+.+++.+..
T Consensus       163 ~~lf~~i~~~~~~  175 (198)
T cd04142         163 LLLFKELLISATT  175 (198)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999987753

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.94  E-value=3.6e-25  Score=210.05  Aligned_cols=163  Identities=50%  Similarity=0.905  Sum_probs=144.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+++|++|||||||++++++..+...+.++++.++....+.+++..+.+++||++|++.+...+..+++.+|++|+||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            68999999999999999999999998888899998888888999998899999999999999999999999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |++++.+++.+..|+..+..+..                               ++.|+++++||+|+..          
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~-------------------------------~~~pivvv~nK~D~~~----------  119 (164)
T smart00175       81 DITNRESFENLKNWLKELREYAD-------------------------------PNVVIMLVGNKSDLED----------  119 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-------------------------------CCCeEEEEEEchhccc----------
Confidence            99999999999999999876531                               4678888888888742          


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA  247 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~  247 (730)
                                                              .+.+..++++++++..++.++|+||++|.|++++|+.+++
T Consensus       120 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~  159 (164)
T smart00175      120 ----------------------------------------QRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAR  159 (164)
T ss_pred             ----------------------------------------ccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence                                                    1355677888899999999999999999999999999998


Q ss_pred             HHHH
Q psy17467        248 ELME  251 (730)
Q Consensus       248 ~l~e  251 (730)
                      .+.+
T Consensus       160 ~~~~  163 (164)
T smart00175      160 EILK  163 (164)
T ss_pred             HHhh
Confidence            8743

Rab GTPases are implicated in vesicle trafficking.

>KOG0088|consensus

Probab=99.93  E-value=1.5e-26  Score=221.77  Aligned_cols=171  Identities=34%  Similarity=0.625  Sum_probs=153.3

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI   83 (730)
                      +.+.+||+++|...||||||+-||..++|...+.+|+...+..+.+.+.+....+.||||+|+++|..+.+-||++++++
T Consensus        10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa   89 (218)
T KOG0088|consen   10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA   89 (218)
T ss_pred             CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence            45789999999999999999999999999999999998899999999999999999999999999999999999999999


Q ss_pred             EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      +||||+||+.||+.++.|..+++....                               ..+.+++||||.||.       
T Consensus        90 lLVyDITDrdSFqKVKnWV~Elr~mlG-------------------------------nei~l~IVGNKiDLE-------  131 (218)
T KOG0088|consen   90 LLVYDITDRDSFQKVKNWVLELRTMLG-------------------------------NEIELLIVGNKIDLE-------  131 (218)
T ss_pred             EEEEeccchHHHHHHHHHHHHHHHHhC-------------------------------CeeEEEEecCcccHH-------
Confidence            999999999999999999999988653                               223445566666664       


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM  243 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe  243 (730)
                                                                 .+|+|+.++++.+|+..|+.|+|+||+.+.||.++|+
T Consensus       132 -------------------------------------------eeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe  168 (218)
T KOG0088|consen  132 -------------------------------------------EERQVTRQEAEAYAESVGALYMETSAKDNVGISELFE  168 (218)
T ss_pred             -------------------------------------------HhhhhhHHHHHHHHHhhchhheecccccccCHHHHHH
Confidence                                                       2488999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy17467        244 QIAAELMEKLAE  255 (730)
Q Consensus       244 ~Li~~l~e~~~~  255 (730)
                      .+....++....
T Consensus       169 ~Lt~~MiE~~s~  180 (218)
T KOG0088|consen  169 SLTAKMIEHSSQ  180 (218)
T ss_pred             HHHHHHHHHhhh
Confidence            999888765443

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.93  E-value=3.6e-26  Score=269.21  Aligned_cols=244  Identities=18%  Similarity=0.096  Sum_probs=185.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh----------hhhhh-
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER----------FRSIT-   73 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~----------~~sl~-   73 (730)
                      ..+||+++|.+|||||||+|++++..+. ....+.++.+.....+.+++.  .+.+|||||..+          +..+. 
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence            3489999999999999999999998753 344465666777777778875  467999999532          22222 


Q ss_pred             HhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCC
Q psy17467         74 QSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKT  153 (730)
Q Consensus        74 ~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~  153 (730)
                      ..+++.||++|+|+|+++..+++++. ++..+..                                  .+.|+++|+||+
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~----------------------------------~~~piIiV~NK~  571 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD----------------------------------AGRALVLVFNKW  571 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----------------------------------cCCCEEEEEEch
Confidence            24578999999999999998888765 3333221                                  357899999999


Q ss_pred             CcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHH-HHHhcCCeEEEEec
Q psy17467        154 DLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGED-FAKRHDMYYLETSA  232 (730)
Q Consensus       154 DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~-lak~lg~~fvEtSA  232 (730)
                      |+.+....                                                ..-..+... +.....++++++||
T Consensus       572 DL~~~~~~------------------------------------------------~~~~~~~~~~l~~~~~~~ii~iSA  603 (712)
T PRK09518        572 DLMDEFRR------------------------------------------------QRLERLWKTEFDRVTWARRVNLSA  603 (712)
T ss_pred             hcCChhHH------------------------------------------------HHHHHHHHHhccCCCCCCEEEEEC
Confidence            98642110                                                000011111 11112356799999


Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHHhhcCCCCceeee
Q psy17467        233 KASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNIDIKSV  312 (730)
Q Consensus       233 ktG~GVeeLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~~k~~p~~~~~~~  312 (730)
                      ++|.||+++|+.+.+.+.++..+..+...+++.+.+           ...++||...+++.+..|++|.+..||.|+.++
T Consensus       604 ktg~gv~~L~~~i~~~~~~~~~~i~T~~Ln~~l~~~-----------~~~~~~p~~~g~~~ki~y~~q~~~~Pp~f~~f~  672 (712)
T PRK09518        604 KTGWHTNRLAPAMQEALESWDQRIPTGKLNAFLGKI-----------QAEHPHPLRGGKQPRILFATQASTRPPRFVIFT  672 (712)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcccCChHHHHHHHHHH-----------HhhCCCCccCCeeeeEEEEECCCCCCCEEEEEc
Confidence            999999999999999988777777777777766655           245677778889999999999999999999996


Q ss_pred             ccccccchhhHHHhHhhhhhhhccCCceeEEEeec
Q psy17467        313 SGISQIRSDIVKSLSLYYYTFVDLLHFKDCVYLSG  347 (730)
Q Consensus       313 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (730)
                      +  +.++.+|.|||.|.+|+.|++-|+|+++.++.
T Consensus       673 ~--~~~~~~y~r~l~~~~r~~~~~~g~pi~~~~~~  705 (712)
T PRK09518        673 T--GFLEHGYRRFLERSLREEFGFEGSPIQISVNI  705 (712)
T ss_pred             C--CCCChHHHHHHHHHHHHHcCCccceEEEEEEe
Confidence            5  78999999999999999999999999999987

>KOG0083|consensus

Probab=99.93  E-value=4.5e-27  Score=219.99  Aligned_cols=157  Identities=45%  Similarity=0.770  Sum_probs=140.4

Q ss_pred             EEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecC
Q psy17467         12 LVGNAGVGKTCLVRRFTQGVFPP-GQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDIS   90 (730)
Q Consensus        12 VLG~pnVGKSSLLnrLl~~~f~~-~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvt   90 (730)
                      ++|++++|||+|+-||..+-|.. ...+|+|+++..+.+.+++..+++++|||+|+++|+++...||++||+.+++||++
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia   81 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA   81 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence            68999999999999999888754 46799999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhh
Q psy17467         91 CQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFV  170 (730)
Q Consensus        91 d~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~  170 (730)
                      |+.||++++.|+.+|..+.+..                               ..+                        
T Consensus        82 nkasfdn~~~wlsei~ey~k~~-------------------------------v~l------------------------  106 (192)
T KOG0083|consen   82 NKASFDNCQAWLSEIHEYAKEA-------------------------------VAL------------------------  106 (192)
T ss_pred             cchhHHHHHHHHHHHHHHHHhh-------------------------------HhH------------------------
Confidence            9999999999999998876321                               222                        


Q ss_pred             hhcccccccchhhhhhhcccCCcCCcccccccccccc-CCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467        171 AVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDRE-DREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       171 a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~-~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                                                 +++|||+|+. +|.|..++++++|+.+|++|+|+|||||.||+..|-.|.+.+
T Consensus       107 ---------------------------~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l  159 (192)
T KOG0083|consen  107 ---------------------------MLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEEL  159 (192)
T ss_pred             ---------------------------hhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHH
Confidence                                       3445666663 589999999999999999999999999999999999999887


Q ss_pred             H
Q psy17467        250 M  250 (730)
Q Consensus       250 ~  250 (730)
                      .
T Consensus       160 ~  160 (192)
T KOG0083|consen  160 K  160 (192)
T ss_pred             H
Confidence            4

>cd01861 Rab6 Rab6 subfamily

Probab=99.93  E-value=5e-25  Score=209.18  Aligned_cols=160  Identities=41%  Similarity=0.722  Sum_probs=142.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+++|++|||||||+++++++.+...+.|+.+.++....+.+++..+.+++|||||+..+..++..+++++|++|+||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999998888899999999999999988889999999999999999999999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |+++++||+.+..|++.+.....                               .+.|+++++||+|+.+          
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~-------------------------------~~~~iilv~nK~D~~~----------  119 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERG-------------------------------NDVIIVLVGNKTDLSD----------  119 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCC-------------------------------CCCEEEEEEEChhccc----------
Confidence            99999999999999999865431                               2577888888888741          


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA  247 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~  247 (730)
                                                              .+.+..++...+++..++.++++||++|.|++++|+++.+
T Consensus       120 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~  159 (161)
T cd01861         120 ----------------------------------------KRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIAS  159 (161)
T ss_pred             ----------------------------------------cCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence                                                    2456778888888888999999999999999999999986


Q ss_pred             H
Q psy17467        248 E  248 (730)
Q Consensus       248 ~  248 (730)
                      .
T Consensus       160 ~  160 (161)
T cd01861         160 A  160 (161)
T ss_pred             h
Confidence            4

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd01863 Rab18 Rab18 subfamily

Probab=99.93  E-value=5.4e-25  Score=209.31  Aligned_cols=160  Identities=46%  Similarity=0.868  Sum_probs=141.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+++|++|||||||+++|+++.+...+.|+.+.++....+.+++..+.+++||++|++.+..++..+++++|++|+||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            68999999999999999999999988878899998888888888888899999999999999999999999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |++++.||+.+..|+..+..+.                              ..++.|+++||||+|+.           
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~~~~iv~nK~D~~-----------  119 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYS------------------------------TNNDIVKMLVGNKIDKE-----------  119 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhC------------------------------CCCCCcEEEEEECCccc-----------
Confidence            9999999999999999987653                              13567788888888874           


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA  247 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~  247 (730)
                                                              .+.+..++..++++..+++++++||++|.|++++|+.+++
T Consensus       120 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~  159 (161)
T cd01863         120 ----------------------------------------NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE  159 (161)
T ss_pred             ----------------------------------------ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence                                                    2345567888899999999999999999999999999886


Q ss_pred             H
Q psy17467        248 E  248 (730)
Q Consensus       248 ~  248 (730)
                      .
T Consensus       160 ~  160 (161)
T cd01863         160 K  160 (161)
T ss_pred             h
Confidence            4

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>PLN03118 Rab family protein; Provisional

Probab=99.93  E-value=1e-24  Score=219.51  Aligned_cols=169  Identities=43%  Similarity=0.782  Sum_probs=143.6

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      +.+..+||+|+|++|||||||+++|+++.+. .+.|+.+.++....+.+++..+.+.||||||++++..++..+++++|+
T Consensus        10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~   88 (211)
T PLN03118         10 GYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG   88 (211)
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            4567799999999999999999999998874 567888888888888888888999999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHH-HHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467         83 LILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV  161 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~-wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~  161 (730)
                      +|+|||+++++||+++.. |...+....                              ...+.|+++||||+|+..    
T Consensus        89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~------------------------------~~~~~~~ilv~NK~Dl~~----  134 (211)
T PLN03118         89 IILVYDVTRRETFTNLSDVWGKEVELYS------------------------------TNQDCVKMLVGNKVDRES----  134 (211)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEEECccccc----
Confidence            999999999999999976 666554322                              124567788888888752    


Q ss_pred             HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHH
Q psy17467        162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL  241 (730)
Q Consensus       162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeL  241 (730)
                                                                    .+.+..+++..++...++.|+||||++|.||+++
T Consensus       135 ----------------------------------------------~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l  168 (211)
T PLN03118        135 ----------------------------------------------ERDVSREEGMALAKEHGCLFLECSAKTRENVEQC  168 (211)
T ss_pred             ----------------------------------------------cCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence                                                          2346677888899999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy17467        242 FMQIAAELMEK  252 (730)
Q Consensus       242 Fe~Li~~l~e~  252 (730)
                      |+.|.+.+.+.
T Consensus       169 ~~~l~~~~~~~  179 (211)
T PLN03118        169 FEELALKIMEV  179 (211)
T ss_pred             HHHHHHHHHhh
Confidence            99999988654

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.93  E-value=7.9e-25  Score=211.30  Aligned_cols=171  Identities=26%  Similarity=0.547  Sum_probs=140.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      .||+|+|++|||||||+++|.++.+...+.|+++..+ ...+.+++..+.+.+|||+|++++..++..++.++|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            5899999999999999999999999888888887444 456788888899999999999999988888999999999999


Q ss_pred             ecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         88 DISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        88 Dvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      |+++++||+++. .|+..+.+..                                ++.|+++|+||.|+.+.......  
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~--------------------------------~~~piilv~nK~Dl~~~~~~~~~--  126 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFC--------------------------------PNVPIILVGNKKDLRNDEHTRRE--  126 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC--------------------------------CCCCEEEEeeChhcccChhhhhh--
Confidence            999999999985 4888775432                                56899999999998643221100  


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe~L  245 (730)
                                                       +.   ....+.+..++++++++..+. .|++|||++|.||+++|++|
T Consensus       127 ---------------------------------i~---~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l  170 (175)
T cd01870         127 ---------------------------------LA---KMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMA  170 (175)
T ss_pred             ---------------------------------hh---hccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHH
Confidence                                             00   112346778899999998875 79999999999999999999


Q ss_pred             HHHH
Q psy17467        246 AAEL  249 (730)
Q Consensus       246 i~~l  249 (730)
                      ++.+
T Consensus       171 ~~~~  174 (175)
T cd01870         171 TRAA  174 (175)
T ss_pred             HHHh
Confidence            8754

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04177 RSR1 RSR1 subgroup

Probab=99.93  E-value=9.4e-25  Score=210.75  Aligned_cols=162  Identities=29%  Similarity=0.553  Sum_probs=140.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+++|++|||||||+++|.++.+...+.|+++. .+.+.+.+++..+.+++|||+|++++..+++.+++.++++|+||
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIED-SYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchh-eEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            78999999999999999999999998888888874 45677888888899999999999999999999999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |++++++|+.+..|.+.+.+..                              ..++.|++++|||.|+.+          
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~piiiv~nK~D~~~----------  120 (168)
T cd04177          81 SVTSEASLNELGELREQVLRIK------------------------------DSDNVPMVLVGNKADLED----------  120 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh------------------------------CCCCCCEEEEEEChhccc----------
Confidence            9999999999999998886532                              125788888999998852          


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC-CeEEEEecCCCCChHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg-~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                                              .+.++.+++..+++..+ +++++|||++|.||+++|++++
T Consensus       121 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~  160 (168)
T cd04177         121 ----------------------------------------DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV  160 (168)
T ss_pred             ----------------------------------------cCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence                                                    23456677888888888 7999999999999999999999


Q ss_pred             HHHH
Q psy17467        247 AELM  250 (730)
Q Consensus       247 ~~l~  250 (730)
                      ..+.
T Consensus       161 ~~~~  164 (168)
T cd04177         161 RQII  164 (168)
T ss_pred             HHHh
Confidence            7664

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.93  E-value=1.8e-24  Score=205.75  Aligned_cols=162  Identities=42%  Similarity=0.801  Sum_probs=143.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||+|+|++|||||||+++++++.+...+.++.+.++....+.+++..+.+.+||++|++++...+..+++++|++|+|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            37999999999999999999999999887889998888888999999999999999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||++++++|+.+..|+..+....                               .++.|+++++||.|+.+         
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~-------------------------------~~~~~iivv~nK~D~~~---------  120 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNA-------------------------------SPNIIIALVGNKADLES---------  120 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhC-------------------------------CCCCeEEEEEECccccc---------
Confidence            99999999999999999987643                               15677788888888742         


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                                               .+.++.++...++...++.++++||++|.|++++|++++
T Consensus       121 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd01860         121 -----------------------------------------KRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIA  159 (163)
T ss_pred             -----------------------------------------cCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence                                                     234566788888999999999999999999999999998


Q ss_pred             HHH
Q psy17467        247 AEL  249 (730)
Q Consensus       247 ~~l  249 (730)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd01860         160 KKL  162 (163)
T ss_pred             HHh
Confidence            765

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01892 Miro2 Miro2 subfamily

Probab=99.93  E-value=4.4e-25  Score=214.89  Aligned_cols=163  Identities=21%  Similarity=0.316  Sum_probs=138.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI   83 (730)
                      ...+||+++|++|||||||+++|+++.|. ..+.||++.++....+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            35799999999999999999999999998 88889999888778888899889999999999999988999999999999


Q ss_pred             EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      |+|||++++.+|+.+..|+..+..                                 ..+.|+++|+||+|+.+.     
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~---------------------------------~~~~p~iiv~NK~Dl~~~-----  123 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFM---------------------------------LGEIPCLFVAAKADLDEQ-----  123 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhcc---------------------------------CCCCeEEEEEEccccccc-----
Confidence            999999999999999888876421                                 135788888899988521     


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLF  242 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLF  242 (730)
                                                                   +.+..++.+++++.+++ .++++||++|.|++++|
T Consensus       124 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf  158 (169)
T cd01892         124 ---------------------------------------------QQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELF  158 (169)
T ss_pred             ---------------------------------------------ccccccCHHHHHHHcCCCCCEEEEeccCccHHHHH
Confidence                                                         22333456777888887 47999999999999999


Q ss_pred             HHHHHHHH
Q psy17467        243 MQIAAELM  250 (730)
Q Consensus       243 e~Li~~l~  250 (730)
                      +.+++.+.
T Consensus       159 ~~l~~~~~  166 (169)
T cd01892         159 TKLATAAQ  166 (169)
T ss_pred             HHHHHHhh
Confidence            99988763

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01862 Rab7 Rab7 subfamily

Probab=99.93  E-value=1.9e-24  Score=207.07  Aligned_cols=168  Identities=38%  Similarity=0.660  Sum_probs=143.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+++|++|||||||+++++++.+...+.++++.++....+.+++..+.+++||+||++.+..++..+++++|++|+||
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999998888889988888888899998999999999999999999999999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |++++.+|+.+..|.+.+......                           ....+.|+++|+||.|+.+          
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~p~ilv~nK~Dl~~----------  123 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASP---------------------------SDPENFPFVVLGNKIDLEE----------  123 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCc---------------------------cCCCCceEEEEEECccccc----------
Confidence            999999999999999887654310                           1124678888888888852          


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC-CeEEEEecCCCCChHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg-~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                                              .+.++.++.+.+++..+ ++++++||++|.|++++|+.++
T Consensus       124 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~  163 (172)
T cd01862         124 ----------------------------------------KRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIA  163 (172)
T ss_pred             ----------------------------------------ccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHH
Confidence                                                    13345677778888887 7999999999999999999999


Q ss_pred             HHHHHH
Q psy17467        247 AELMEK  252 (730)
Q Consensus       247 ~~l~e~  252 (730)
                      +.+.+.
T Consensus       164 ~~~~~~  169 (172)
T cd01862         164 RKALEQ  169 (172)
T ss_pred             HHHHhc
Confidence            888654

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.93  E-value=5.6e-25  Score=211.08  Aligned_cols=161  Identities=30%  Similarity=0.471  Sum_probs=135.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhh-hhhhHhhhccccEEEEEe
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERF-RSITQSYYRSAHALILVY   87 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~-~sl~~~~~r~ADaIILVy   87 (730)
                      ||+++|++|||||||+++++++.+...+.|+.+.. +...+.+++..+.+++||++|++.+ ......+++++|++|+||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            69999999999999999999998887777877533 4566788888899999999999853 445677899999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |++++.||+.+..|+..+.....                             ...+.|+++||||+|+..          
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~-----------------------------~~~~~piilv~nK~Dl~~----------  120 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKK-----------------------------RDREIPVILVGNKADLLH----------  120 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhc-----------------------------CCCCCCEEEEEECCchHH----------
Confidence            99999999999999988865431                             124678888888888742          


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCC-CChHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKAS-DNVEKLFMQIA  246 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG-~GVeeLFe~Li  246 (730)
                                                              .+.++.+++.++++..+++|++|||++| .||+++|+.++
T Consensus       121 ----------------------------------------~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~  160 (165)
T cd04146         121 ----------------------------------------YRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELC  160 (165)
T ss_pred             ----------------------------------------hCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHH
Confidence                                                    2457778899999999999999999999 59999999999


Q ss_pred             HHH
Q psy17467        247 AEL  249 (730)
Q Consensus       247 ~~l  249 (730)
                      +.+
T Consensus       161 ~~~  163 (165)
T cd04146         161 REV  163 (165)
T ss_pred             HHH
Confidence            866

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04114 Rab30 Rab30 subfamily

Probab=99.93  E-value=2.8e-24  Score=206.02  Aligned_cols=168  Identities=73%  Similarity=1.205  Sum_probs=145.9

Q ss_pred             CCCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccc
Q psy17467          1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSA   80 (730)
Q Consensus         1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~A   80 (730)
                      |+++++.+||+++|++|||||||+++++++.+...+.++++.++....+.+++..+.+.+||++|+..+...+..+++.+
T Consensus         1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~   80 (169)
T cd04114           1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSA   80 (169)
T ss_pred             CCCCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence            78788889999999999999999999999888888889998888888889999889999999999999999889999999


Q ss_pred             cEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhH
Q psy17467         81 HALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEH  160 (730)
Q Consensus        81 DaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~  160 (730)
                      |++++|||++++.+|+.+..|+..+.....                               .+.|+++|+||+|+.+   
T Consensus        81 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-------------------------------~~~~~i~v~NK~D~~~---  126 (169)
T cd04114          81 NALILTYDITCEESFRCLPEWLREIEQYAN-------------------------------NKVITILVGNKIDLAE---  126 (169)
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhCC-------------------------------CCCeEEEEEECccccc---
Confidence            999999999999999999999998865431                               3567778888888742   


Q ss_pred             HHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHH
Q psy17467        161 VLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEK  240 (730)
Q Consensus       161 ~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVee  240 (730)
                                                                     .+.+..+..+.+.+...+.+++|||++|.|+++
T Consensus       127 -----------------------------------------------~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  159 (169)
T cd04114         127 -----------------------------------------------RREVSQQRAEEFSDAQDMYYLETSAKESDNVEK  159 (169)
T ss_pred             -----------------------------------------------ccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHH
Confidence                                                           234556667778877788999999999999999


Q ss_pred             HHHHHHHHH
Q psy17467        241 LFMQIAAEL  249 (730)
Q Consensus       241 LFe~Li~~l  249 (730)
                      +|+.|.+.+
T Consensus       160 l~~~i~~~~  168 (169)
T cd04114         160 LFLDLACRL  168 (169)
T ss_pred             HHHHHHHHh
Confidence            999998754

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0395|consensus

Probab=99.93  E-value=4.3e-25  Score=222.59  Aligned_cols=164  Identities=31%  Similarity=0.515  Sum_probs=148.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||+++|.+|||||+|+.+|.++.|...|.||++ +.+.+.+.+++..+.+.|+||+|++++..+...+++++|++++|
T Consensus         3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             ceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            47999999999999999999999999999999998 88899999999999999999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||++|+.||+.+..+++.|.+...                              ...+|+++||||+|+..         
T Consensus        82 ysitd~~SF~~~~~l~~~I~r~~~------------------------------~~~~PivlVGNK~Dl~~---------  122 (196)
T KOG0395|consen   82 YSITDRSSFEEAKQLREQILRVKG------------------------------RDDVPIILVGNKCDLER---------  122 (196)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhC------------------------------cCCCCEEEEEEcccchh---------
Confidence            999999999999999999954331                              13467777777777742         


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                                               .|.|+.++++.++..++|+|+||||+.+.||+++|..++
T Consensus       123 -----------------------------------------~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~  161 (196)
T KOG0395|consen  123 -----------------------------------------ERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELV  161 (196)
T ss_pred             -----------------------------------------ccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHH
Confidence                                                     388999999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy17467        247 AELME  251 (730)
Q Consensus       247 ~~l~e  251 (730)
                      +.+..
T Consensus       162 r~~~~  166 (196)
T KOG0395|consen  162 REIRL  166 (196)
T ss_pred             HHHHh
Confidence            98854

>cd04123 Rab21 Rab21 subfamily

Probab=99.93  E-value=2.6e-24  Score=203.00  Aligned_cols=161  Identities=38%  Similarity=0.677  Sum_probs=140.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+++|++|||||||+++++++.+...+.++.+.+.....+.+.+..+.+.+||++|++.+..++..+++++|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999999988777778877777778888888889999999999999999999999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |++++++++.+..|++++.....                               .+.|+++|+||+|+..          
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-------------------------------~~~piiiv~nK~D~~~----------  119 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRG-------------------------------NNISLVIVGNKIDLER----------  119 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-------------------------------CCCeEEEEEECccccc----------
Confidence            99999999999999998876431                               3577888888888752          


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA  247 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~  247 (730)
                                                              .+.+..++..++++..++.+++|||++|.|++++|+++.+
T Consensus       120 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~  159 (162)
T cd04123         120 ----------------------------------------QRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAK  159 (162)
T ss_pred             ----------------------------------------ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence                                                    2345667788888889999999999999999999999987


Q ss_pred             HH
Q psy17467        248 EL  249 (730)
Q Consensus       248 ~l  249 (730)
                      .+
T Consensus       160 ~~  161 (162)
T cd04123         160 RM  161 (162)
T ss_pred             Hh
Confidence            65

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04148 RGK RGK subfamily

Probab=99.92  E-value=1.4e-24  Score=221.53  Aligned_cols=163  Identities=26%  Similarity=0.396  Sum_probs=137.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhc-cccEEEE
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYR-SAHALIL   85 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r-~ADaIIL   85 (730)
                      +||+++|++|||||||+++|+++.+. ..+.++.+.+++...+.+++..+.+.+|||+|++  ..+...+++ ++|++|+
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence            58999999999999999999988886 6676777667888889999999999999999998  234455667 9999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      |||++++.||+.+..|+..+....                              ...+.|+++|+||+|+..        
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~------------------------------~~~~~piilV~NK~Dl~~--------  120 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNR------------------------------QLEDRPIILVGNKSDLAR--------  120 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEEEChhccc--------
Confidence            999999999999999999886542                              114678888888888742        


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L  245 (730)
                                                                .+.++.+++.+++...++.|+||||++|.||+++|+.+
T Consensus       121 ------------------------------------------~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148         121 ------------------------------------------SREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             ------------------------------------------cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence                                                      24567788889999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy17467        246 AAELMEK  252 (730)
Q Consensus       246 i~~l~e~  252 (730)
                      ++.+...
T Consensus       159 ~~~~~~~  165 (221)
T cd04148         159 VRQIRLR  165 (221)
T ss_pred             HHHHHhh
Confidence            9888543

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.92  E-value=3.6e-24  Score=222.73  Aligned_cols=169  Identities=26%  Similarity=0.405  Sum_probs=139.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+++|++|||||||+++|+++.|...+.||++ ++..+.+.+++..+.++||||+|++.+..++..++.++|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999999988889987 777788889999999999999999999888888999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |+++++||+++..|++++......      .                ........+.|+++||||+|+.+          
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~------~----------------~~~~~~~~~~piIivgNK~Dl~~----------  127 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSC------L----------------KNKTKENVKIPMVICGNKADRDF----------  127 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcc------c----------------ccccccCCCCcEEEEEECccchh----------
Confidence            999999999999999998654210      0                00001224678888888888742          


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHh-cCCeEEEEecCCCCChHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR-HDMYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~-lg~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                                              .+.+..+++.+++.. .++.+++|||++|.||+++|++|+
T Consensus       128 ----------------------------------------~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~  167 (247)
T cd04143         128 ----------------------------------------PREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALF  167 (247)
T ss_pred             ----------------------------------------ccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHH
Confidence                                                    145667777777654 468899999999999999999998


Q ss_pred             HHH
Q psy17467        247 AEL  249 (730)
Q Consensus       247 ~~l  249 (730)
                      ...
T Consensus       168 ~~~  170 (247)
T cd04143         168 SLA  170 (247)
T ss_pred             HHh
Confidence            755

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.91  E-value=1.3e-23  Score=198.99  Aligned_cols=162  Identities=33%  Similarity=0.549  Sum_probs=139.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+++|++|||||||+++++++.+...+.++.+ +...+...+++..+.+.+||++|+..+...+..+++.+|++++||
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcch-hhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            5899999999999999999999998888878776 445667778888899999999999999999999999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |++++.+|+.+..|+..+.....                              ..+.|+++|+||+|+..          
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~------------------------------~~~~piiiv~NK~D~~~----------  119 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKD------------------------------DDNVPLLLVGNKCDLED----------  119 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcC------------------------------CCCCCEEEEEEcccccc----------
Confidence            99999999999999998876431                              24678888888888752          


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA  247 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~  247 (730)
                                                              .+.+..++...++..++++++++||++|.|++++|+.+.+
T Consensus       120 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139         120 ----------------------------------------KRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             ----------------------------------------ccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence                                                    1234556777888888999999999999999999999988


Q ss_pred             HHH
Q psy17467        248 ELM  250 (730)
Q Consensus       248 ~l~  250 (730)
                      .+.
T Consensus       160 ~~~  162 (164)
T cd04139         160 EIR  162 (164)
T ss_pred             HHH
Confidence            764

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.91  E-value=5.1e-24  Score=224.80  Aligned_cols=245  Identities=20%  Similarity=0.144  Sum_probs=202.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhh-------Hhhhccc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSIT-------QSYYRSA   80 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~-------~~~~r~A   80 (730)
                      ..|++||.|+||||||++++++.+.....++.++.+..+.++.++|  +++|+.|+||.-.-.+..       -...++|
T Consensus        64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~A  141 (365)
T COG1163          64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARNA  141 (365)
T ss_pred             eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeeccC
Confidence            5799999999999999999999998888889988899999999999  889999999865433322       2458899


Q ss_pred             cEEEEEeecCCCCc-hhhhHHHHHHHHHHhcccceEEEEecc---------------CchhhHHHHHhhhcccccCCCCC
Q psy17467         81 HALILVYDISCQPT-FDCLTDWLREIEEYASFKVLRVLVGGT---------------SGLKIVNEMASAAGLLCTVDPAL  144 (730)
Q Consensus        81 DaIILVyDvtd~eS-fe~L~~wleeI~~~~~~~~piVLVg~k---------------~dl~~~~~i~~~~g~~~~~~~~~  144 (730)
                      |+||+|+|+....+ .+.+.+.+++.........|-+.+-.+               .|++.+++++++|+++++     
T Consensus       142 DlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA-----  216 (365)
T COG1163         142 DLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNA-----  216 (365)
T ss_pred             CEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccc-----
Confidence            99999999997666 667777777754444444454444433               789999999999999665     


Q ss_pred             ceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC
Q psy17467        145 ATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD  224 (730)
Q Consensus       145 PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg  224 (730)
                      -|++-++ +.+++                          .+++..++..|.|.++|.||+|+.    +.++...+.+.. 
T Consensus       217 ~V~Ir~d-vTlDd--------------------------~id~l~~nrvY~p~l~v~NKiD~~----~~e~~~~l~~~~-  264 (365)
T COG1163         217 DVLIRED-VTLDD--------------------------LIDALEGNRVYKPALYVVNKIDLP----GLEELERLARKP-  264 (365)
T ss_pred             eEEEecC-CcHHH--------------------------HHHHHhhcceeeeeEEEEeccccc----CHHHHHHHHhcc-
Confidence            3444443 55543                          466778888999999999999985    356777777666 


Q ss_pred             CeEEEEecCCCCChHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHH-hhc
Q psy17467        225 MYYLETSAKASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQI-VKK  303 (730)
Q Consensus       225 ~~fvEtSAktG~GVeeLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~-~k~  303 (730)
                       .++.+||++|.|++++.+.+.+.+                 .++|+|+++++..++..+|.++.+++++.++|+. |++
T Consensus       265 -~~v~isa~~~~nld~L~e~i~~~L-----------------~liRVYtK~~g~~pd~~~PlIlr~GsTV~Dvc~~IH~~  326 (365)
T COG1163         265 -NSVPISAKKGINLDELKERIWDVL-----------------GLIRVYTKPPGEEPDFDEPLILRRGSTVGDVCRKIHRD  326 (365)
T ss_pred             -ceEEEecccCCCHHHHHHHHHHhh-----------------CeEEEEecCCCCCCCCCCCeEEeCCCcHHHHHHHHHHH
Confidence             679999999999999999999999                 9999999999999999999999999999999998 999


Q ss_pred             CCCCce
Q psy17467        304 FPNIDI  309 (730)
Q Consensus       304 ~p~~~~  309 (730)
                      +...|+
T Consensus       327 l~~~Fr  332 (365)
T COG1163         327 LVENFR  332 (365)
T ss_pred             HHHhcc
Confidence            988885

>cd00154 Rab Rab family

Probab=99.91  E-value=2.7e-23  Score=193.40  Aligned_cols=158  Identities=53%  Similarity=0.912  Sum_probs=140.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+++|++|||||||+++++++.+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++++|++|+|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999999888899999999999999888899999999999999999999999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |++++++++.+..|+..+.....                               ++.|+++++||+|+..          
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~p~ivv~nK~D~~~----------  119 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAP-------------------------------ENIPIILVGNKIDLED----------  119 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-------------------------------CCCcEEEEEEcccccc----------
Confidence            99999999999999999876531                               4577888888888741          


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                                              ...+..++..+++...+++++++||++|.|++++|++|.
T Consensus       120 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154         120 ----------------------------------------QRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ----------------------------------------cccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence                                                    134566888889988899999999999999999999886

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04129 Rho2 Rho2 subfamily

Probab=99.91  E-value=1.8e-23  Score=206.47  Aligned_cols=170  Identities=27%  Similarity=0.544  Sum_probs=140.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      .||+|+|++|||||||++++..+.+...+.++++..+ ...+.+++..+.+.+||++|++.+......+++++|++++||
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            5899999999999999999998888887778776443 456677888889999999999888877777889999999999


Q ss_pred             ecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         88 DISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        88 Dvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      |++++++|+.+. .|++.+.+..                                ++.|+++||||+|+.++...     
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~--------------------------------~~~piilvgnK~Dl~~~~~~-----  123 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYC--------------------------------PNVPVILVGLKKDLRQDAVA-----  123 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEeeChhhhhCccc-----
Confidence            999999999996 5999886532                                46899999999998542100     


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe~L  245 (730)
                                                         .......+.++.+++..+++..++ .|+||||++|.||+++|+.+
T Consensus       124 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l  168 (187)
T cd04129         124 -----------------------------------KEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAA  168 (187)
T ss_pred             -----------------------------------ccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHH
Confidence                                               000112467778899999999996 89999999999999999999


Q ss_pred             HHHHH
Q psy17467        246 AAELM  250 (730)
Q Consensus       246 i~~l~  250 (730)
                      .+.+.
T Consensus       169 ~~~~~  173 (187)
T cd04129         169 TRAAL  173 (187)
T ss_pred             HHHHh
Confidence            98773

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd00157 Rho Rho (Ras homology) family

Probab=99.91  E-value=2.3e-23  Score=199.40  Aligned_cols=168  Identities=32%  Similarity=0.622  Sum_probs=137.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+++|++|||||||+++|+++.+...+.|+.. +.....+..++..+.+++||+||++++......+++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            6899999999999999999999999777777776 445666777888899999999999988888888899999999999


Q ss_pred             ecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         88 DISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        88 Dvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      |++++.+|..+. .|+..+....                                ++.|+++||||+|+.+.....    
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~--------------------------------~~~p~ivv~nK~Dl~~~~~~~----  123 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYC--------------------------------PNVPIILVGTKIDLRDDENTL----  123 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC--------------------------------CCCCEEEEEccHHhhhchhhh----
Confidence            999999998775 4877765432                                478999999999987533210    


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe~L  245 (730)
                                                         .+.+-....+..+++.+++...++ .|+++||++|.|++++|+.|
T Consensus       124 -----------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i  168 (171)
T cd00157         124 -----------------------------------KKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEA  168 (171)
T ss_pred             -----------------------------------hhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHH
Confidence                                               000111245678889999999988 99999999999999999998


Q ss_pred             HH
Q psy17467        246 AA  247 (730)
Q Consensus       246 i~  247 (730)
                      ++
T Consensus       169 ~~  170 (171)
T cd00157         169 IR  170 (171)
T ss_pred             hh
Confidence            75

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04149 Arf6 Arf6 subfamily

Probab=99.91  E-value=1.5e-23  Score=204.23  Aligned_cols=155  Identities=19%  Similarity=0.320  Sum_probs=121.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      ..+||+++|++|||||||+++|..+.+.. +.||+|.++.  .+...  .+.+++|||+|++++..++..++++||++|+
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            35899999999999999999999887754 5688886653  33333  4889999999999999999999999999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      |||++++.+|+++..|+.++....                              ..++.|++||+||+|+.+        
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilv~NK~Dl~~--------  124 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDR------------------------------EMRDALLLVFANKQDLPD--------  124 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCH------------------------------hhcCCcEEEEEECcCCcc--------
Confidence            999999999999888777764321                              014578888888888742        


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH-----hcCCeEEEEecCCCCChHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK-----RHDMYYLETSAKASDNVEK  240 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak-----~lg~~fvEtSAktG~GVee  240 (730)
                                                                  .++.+++++++.     ..++.+++|||++|.||++
T Consensus       125 --------------------------------------------~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~  160 (168)
T cd04149         125 --------------------------------------------AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  160 (168)
T ss_pred             --------------------------------------------CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence                                                        123444444432     1235789999999999999


Q ss_pred             HHHHHHH
Q psy17467        241 LFMQIAA  247 (730)
Q Consensus       241 LFe~Li~  247 (730)
                      +|++|.+
T Consensus       161 ~~~~l~~  167 (168)
T cd04149         161 GLTWLSS  167 (168)
T ss_pred             HHHHHhc
Confidence            9999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04158 ARD1 ARD1 subfamily

Probab=99.91  E-value=1.9e-23  Score=202.61  Aligned_cols=156  Identities=23%  Similarity=0.348  Sum_probs=124.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEee
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYD   88 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyD   88 (730)
                      ||+++|++|||||||+++|.++.+.. +.||++.++.  .+.+++  +.+++|||||+.++...+..+++++|++|+|||
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~~~--~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEYKN--LKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEECC--EEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            68999999999999999999987754 6788875553  444444  889999999999999999999999999999999


Q ss_pred             cCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHh
Q psy17467         89 ISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMV  168 (730)
Q Consensus        89 vtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~  168 (730)
                      ++++.+|+++..|+..+.+..                              ...+.|++|||||.|+.+           
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilv~NK~Dl~~-----------  114 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEK------------------------------ELRDALLLIFANKQDVAG-----------  114 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcCh------------------------------hhCCCCEEEEEeCcCccc-----------
Confidence            999999999999988875422                              013467888888888742           


Q ss_pred             hhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC------CeEEEEecCCCCChHHHH
Q psy17467        169 FVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD------MYYLETSAKASDNVEKLF  242 (730)
Q Consensus       169 ~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg------~~fvEtSAktG~GVeeLF  242 (730)
                                                               .++.+++++++...+      +.+++|||++|.||+++|
T Consensus       115 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f  153 (169)
T cd04158         115 -----------------------------------------ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL  153 (169)
T ss_pred             -----------------------------------------CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence                                                     244556666554222      368899999999999999


Q ss_pred             HHHHHHHHH
Q psy17467        243 MQIAAELME  251 (730)
Q Consensus       243 e~Li~~l~e  251 (730)
                      ++|.+.+.+
T Consensus       154 ~~l~~~~~~  162 (169)
T cd04158         154 DWLSRQLVA  162 (169)
T ss_pred             HHHHHHHhh
Confidence            999887643

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.90  E-value=4.9e-23  Score=203.04  Aligned_cols=165  Identities=18%  Similarity=0.309  Sum_probs=130.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEe-CCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEI-NNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~v-dg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      .+||+++|++|||||||++++..+.+... .||.|.+.....+.+ ++..+.+.+|||+|++++..++..+++++|++|+
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            38999999999999999999999888654 588887766666655 4467899999999999999999999999999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      |||++++.+++.+..|+.++....                              ...+.|+++|+||+|+.+.       
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~------------------------------~~~~~p~iiv~NK~D~~~~-------  124 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFS------------------------------ENQGVPVLVLANKQDLPNA-------  124 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhh------------------------------hcCCCcEEEEEECcCcccc-------
Confidence            999999999999988888876532                              1146788888999998421       


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH------hcCCeEEEEecCCCCChH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK------RHDMYYLETSAKASDNVE  239 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak------~lg~~fvEtSAktG~GVe  239 (730)
                                                                   +..++.+.+..      ..++.+++|||++|.||+
T Consensus       125 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  159 (183)
T cd04152         125 ---------------------------------------------LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ  159 (183)
T ss_pred             ---------------------------------------------CCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence                                                         12223333221      123568999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy17467        240 KLFMQIAAELMEKLA  254 (730)
Q Consensus       240 eLFe~Li~~l~e~~~  254 (730)
                      ++|++|++.+.+.+.
T Consensus       160 ~l~~~l~~~l~~~~~  174 (183)
T cd04152         160 EGLEKLYEMILKRRK  174 (183)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999998865443

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.90  E-value=8.5e-23  Score=206.01  Aligned_cols=164  Identities=31%  Similarity=0.570  Sum_probs=141.1

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      +....+||+++|++|||||||+++++.+.+...+.||++.++....+..++..+.+++|||+|++.+..++..+++++++
T Consensus         5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~   84 (215)
T PTZ00132          5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC   84 (215)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence            44567999999999999999999999999998999999998888888888889999999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +|+|||++++.||+.+..|+..+....                                .+.|++++|||+|+.+     
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~--------------------------------~~~~i~lv~nK~Dl~~-----  127 (215)
T PTZ00132         85 AIIMFDVTSRITYKNVPNWHRDIVRVC--------------------------------ENIPIVLVGNKVDVKD-----  127 (215)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEECccCcc-----
Confidence            999999999999999999999886532                                4567788888888742     


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF  242 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF  242 (730)
                                                                    +.+..+ ...+++..++.|+++||++|.|++++|
T Consensus       128 ----------------------------------------------~~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~f  160 (215)
T PTZ00132        128 ----------------------------------------------RQVKAR-QITFHRKKNLQYYDISAKSNYNFEKPF  160 (215)
T ss_pred             ----------------------------------------------ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence                                                          222222 345677788999999999999999999


Q ss_pred             HHHHHHHH
Q psy17467        243 MQIAAELM  250 (730)
Q Consensus       243 e~Li~~l~  250 (730)
                      .++++.+.
T Consensus       161 ~~ia~~l~  168 (215)
T PTZ00132        161 LWLARRLT  168 (215)
T ss_pred             HHHHHHHh
Confidence            99998874

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.90  E-value=8.4e-24  Score=204.95  Aligned_cols=156  Identities=20%  Similarity=0.271  Sum_probs=124.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeec
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDI   89 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDv   89 (730)
                      |+++|++|||||||+++|.++.+...+.||+|.+.    ..+++..+.+++||++|++++..++..++++||++|+|||+
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   77 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS   77 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence            79999999999999999999988888889988543    23444558999999999999999999999999999999999


Q ss_pred             CCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhh
Q psy17467         90 SCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVF  169 (730)
Q Consensus        90 td~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~  169 (730)
                      +++.+|..++.|+.++....                                ++.|+++||||.|+......        
T Consensus        78 t~~~s~~~~~~~l~~~~~~~--------------------------------~~~piilv~NK~Dl~~~~~~--------  117 (164)
T cd04162          78 ADSERLPLARQELHQLLQHP--------------------------------PDLPLVVLANKQDLPAARSV--------  117 (164)
T ss_pred             CCHHHHHHHHHHHHHHHhCC--------------------------------CCCcEEEEEeCcCCcCCCCH--------
Confidence            99999999998888874321                                57889999999998531100        


Q ss_pred             hhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCC------CCChHHHHH
Q psy17467        170 VAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKA------SDNVEKLFM  243 (730)
Q Consensus       170 ~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAkt------G~GVeeLFe  243 (730)
                                                        .+    .....++..+++..++.+++|||++      ++||+++|+
T Consensus       118 ----------------------------------~~----i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~  159 (164)
T cd04162         118 ----------------------------------QE----IHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLS  159 (164)
T ss_pred             ----------------------------------HH----HHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHH
Confidence                                              00    0001234556677788899999888      999999999


Q ss_pred             HHHH
Q psy17467        244 QIAA  247 (730)
Q Consensus       244 ~Li~  247 (730)
                      .++.
T Consensus       160 ~~~~  163 (164)
T cd04162         160 QLIN  163 (164)
T ss_pred             HHhc
Confidence            8874

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.90  E-value=7.7e-23  Score=204.03  Aligned_cols=162  Identities=27%  Similarity=0.441  Sum_probs=134.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEee
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYD   88 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyD   88 (730)
                      ||+++|++|||||||+++|+++.+...+.++++ +.....+.+++..+.+++||++|+..+..++..++.++|++|+|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            699999999999999999999999888877775 5666778888888999999999999999999999999999999999


Q ss_pred             cCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHh
Q psy17467         89 ISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMV  168 (730)
Q Consensus        89 vtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~  168 (730)
                      ++++.+|+.+..|+..+....                              ...+.|+++|+||+|+...          
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~piilv~NK~Dl~~~----------  119 (198)
T cd04147          80 VDDPESFEEVERLREEILEVK------------------------------EDKFVPIVVVGNKADSLEE----------  119 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCcEEEEEEccccccc----------
Confidence            999999999999998886643                              1246788899999998531          


Q ss_pred             hhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH-hcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467        169 FVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK-RHDMYYLETSAKASDNVEKLFMQIAA  247 (730)
Q Consensus       169 ~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak-~lg~~fvEtSAktG~GVeeLFe~Li~  247 (730)
                                                             .+.+..+++.+.+. ..++.++++||++|.||+++|+++++
T Consensus       120 ---------------------------------------~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  160 (198)
T cd04147         120 ---------------------------------------ERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLR  160 (198)
T ss_pred             ---------------------------------------cccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHH
Confidence                                                   12344444444443 45678999999999999999999998


Q ss_pred             HHH
Q psy17467        248 ELM  250 (730)
Q Consensus       248 ~l~  250 (730)
                      .+.
T Consensus       161 ~~~  163 (198)
T cd04147         161 QAN  163 (198)
T ss_pred             Hhh
Confidence            763

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.90  E-value=1.3e-22  Score=197.25  Aligned_cols=162  Identities=29%  Similarity=0.493  Sum_probs=137.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      .||+++|++|||||||+++++++.+...+.|+.+..+ ...+.+++..+.+++|||||++++..++..++..+|++++||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999999998887888876444 566778888889999999999999999999999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |+++..+|+.+..|+..+.+..                              ...+.|+++|+||+|+..          
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~p~ilv~NK~Dl~~----------  120 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDML------------------------------GKESVPIVLVGNKSDLHT----------  120 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEEEchhhhh----------
Confidence            9999999999999888876532                              124578888888888742          


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA  247 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~  247 (730)
                                                              .+.+..++...+++.++++++++||++|.|++++|+++++
T Consensus       121 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137         121 ----------------------------------------QRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             ----------------------------------------cCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence                                                    1345556777888888899999999999999999999998


Q ss_pred             HHH
Q psy17467        248 ELM  250 (730)
Q Consensus       248 ~l~  250 (730)
                      .+.
T Consensus       161 ~~~  163 (180)
T cd04137         161 EIE  163 (180)
T ss_pred             HHH
Confidence            774

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.90  E-value=7.8e-23  Score=202.06  Aligned_cols=156  Identities=21%  Similarity=0.339  Sum_probs=120.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      ..+||+++|++|||||||++++..+.+. .+.||+|.+.  ..+..++  +.+++||++|++++..+|..+++++|++|+
T Consensus        16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~--~~~~~~~--~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~   90 (181)
T PLN00223         16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeE--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            3489999999999999999999988876 4678888554  3344444  889999999999999999999999999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      |||++++.+|+.+..|+..+....                              .-++.|++|+|||.|+.+        
T Consensus        91 V~D~s~~~s~~~~~~~l~~~l~~~------------------------------~~~~~piilv~NK~Dl~~--------  132 (181)
T PLN00223         91 VVDSNDRDRVVEARDELHRMLNED------------------------------ELRDAVLLVFANKQDLPN--------  132 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHhcCH------------------------------hhCCCCEEEEEECCCCCC--------
Confidence            999999999998877776653211                              014678888888888752        


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC--------CeEEEEecCCCCC
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD--------MYYLETSAKASDN  237 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg--------~~fvEtSAktG~G  237 (730)
                                                                  .+..++   +.+.++        +.+++|||++|+|
T Consensus       133 --------------------------------------------~~~~~~---~~~~l~l~~~~~~~~~~~~~Sa~~g~g  165 (181)
T PLN00223        133 --------------------------------------------AMNAAE---ITDKLGLHSLRQRHWYIQSTCATSGEG  165 (181)
T ss_pred             --------------------------------------------CCCHHH---HHHHhCccccCCCceEEEeccCCCCCC
Confidence                                                        111222   222222        2466899999999


Q ss_pred             hHHHHHHHHHHHHH
Q psy17467        238 VEKLFMQIAAELME  251 (730)
Q Consensus       238 VeeLFe~Li~~l~e  251 (730)
                      |+++|++|.+.+.+
T Consensus       166 v~e~~~~l~~~~~~  179 (181)
T PLN00223        166 LYEGLDWLSNNIAN  179 (181)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988754

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.89  E-value=1.4e-22  Score=198.47  Aligned_cols=156  Identities=21%  Similarity=0.339  Sum_probs=120.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||+++|++|||||||++++..+.+. .+.||+|.++.  .+.++  .+.+++|||+|++++..++..++++||++|+|
T Consensus        13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v   87 (175)
T smart00177       13 EMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV   87 (175)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence            589999999999999999999888875 46688886553  34444  48899999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||++++.+|+.+.+|+..+....                              .-++.|++|||||.|+.+.        
T Consensus        88 ~D~t~~~s~~~~~~~l~~~~~~~------------------------------~~~~~piilv~NK~Dl~~~--------  129 (175)
T smart00177       88 VDSNDRDRIDEAREELHRMLNED------------------------------ELRDAVILVFANKQDLPDA--------  129 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHhhCH------------------------------hhcCCcEEEEEeCcCcccC--------
Confidence            99999999999988888765321                              0146788899999998531        


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHH-----HHhcCCeEEEEecCCCCChHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDF-----AKRHDMYYLETSAKASDNVEKL  241 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~l-----ak~lg~~fvEtSAktG~GVeeL  241 (730)
                                                                  .+.++..+.     ++...+.+++|||++|.||+++
T Consensus       130 --------------------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  165 (175)
T smart00177      130 --------------------------------------------MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEG  165 (175)
T ss_pred             --------------------------------------------CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHH
Confidence                                                        111111111     1122345789999999999999


Q ss_pred             HHHHHHHH
Q psy17467        242 FMQIAAEL  249 (730)
Q Consensus       242 Fe~Li~~l  249 (730)
                      |++|.+.+
T Consensus       166 ~~~l~~~~  173 (175)
T smart00177      166 LTWLSNNL  173 (175)
T ss_pred             HHHHHHHh
Confidence            99997764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd00876 Ras Ras family

Probab=99.89  E-value=1.8e-22  Score=190.01  Aligned_cols=159  Identities=33%  Similarity=0.569  Sum_probs=138.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEee
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYD   88 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyD   88 (730)
                      ||+|+|++|||||||+++++++.+...+.++.+ +.....+.+++..+.+++||++|+..+...+..+++.+|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            699999999999999999999888888888877 6667778888878999999999999999999999999999999999


Q ss_pred             cCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHh
Q psy17467         89 ISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMV  168 (730)
Q Consensus        89 vtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~  168 (730)
                      ++++++++++..|+..+.....                              ..+.|+++|+||+|+..           
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~------------------------------~~~~p~ivv~nK~D~~~-----------  118 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKD------------------------------DEDIPIVLVGNKCDLEN-----------  118 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcC------------------------------CCCCcEEEEEECCcccc-----------
Confidence            9999999999999888866431                              14678888888888752           


Q ss_pred             hhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHHH
Q psy17467        169 FVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE  248 (730)
Q Consensus       169 ~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~~  248 (730)
                                                             .+.++.++++.+++..+++++++||++|.|++++|+.|++.
T Consensus       119 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876         119 ---------------------------------------ERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             ---------------------------------------cceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence                                                   13456788899999989999999999999999999999864

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.89  E-value=1e-22  Score=196.19  Aligned_cols=153  Identities=20%  Similarity=0.365  Sum_probs=117.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+++|++|||||||++++..+.+. .+.||+|.+..  .+.+.  .+.+++||++|++++..++..++++||++|+||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999888886 46788886543  34444  488999999999999999999999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |++++.+|+.+..|+..+....                              ...+.|++|++||.|+.+.         
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilv~NK~Dl~~~---------  116 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNED------------------------------ELRDAVLLVFANKQDLPNA---------  116 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcH------------------------------HhcCCCEEEEEECCCCCCC---------
Confidence            9999999999988777764321                              0135688888888888421         


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHH-HHHHH----HhcCCeEEEEecCCCCChHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEV-GEDFA----KRHDMYYLETSAKASDNVEKLF  242 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee-~~~la----k~lg~~fvEtSAktG~GVeeLF  242 (730)
                                                                 +..++ ...++    ...++.+++|||++|.||+++|
T Consensus       117 -------------------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~  153 (159)
T cd04150         117 -------------------------------------------MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL  153 (159)
T ss_pred             -------------------------------------------CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence                                                       11111 12221    1234468899999999999999


Q ss_pred             HHHHH
Q psy17467        243 MQIAA  247 (730)
Q Consensus       243 e~Li~  247 (730)
                      ++|.+
T Consensus       154 ~~l~~  158 (159)
T cd04150         154 DWLSN  158 (159)
T ss_pred             HHHhc
Confidence            99864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd01893 Miro1 Miro1 subfamily

Probab=99.89  E-value=2e-22  Score=194.43  Aligned_cols=161  Identities=23%  Similarity=0.352  Sum_probs=123.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+++|++|||||||+++|.++.+...+ ++.. +.......+++..+.+++|||+|.+.+...+..+++.+|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENV-PRVL-PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccC-CCcc-cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            48999999999999999999999987664 3332 222344566777899999999999888777778889999999999


Q ss_pred             ecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         88 DISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        88 Dvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      |++++.||+.+. .|++.+....                                ++.|+++||||+|+.+...      
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~--------------------------------~~~pviiv~nK~Dl~~~~~------  120 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLG--------------------------------VKVPIILVGNKSDLRDGSS------  120 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEEchhcccccc------
Confidence            999999999985 5888776532                                4678889999999864210      


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC--CeEEEEecCCCCChHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD--MYYLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg--~~fvEtSAktG~GVeeLFe~  244 (730)
                                                                .....++...++..++  ..+++|||++|.|++++|+.
T Consensus       121 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~  158 (166)
T cd01893         121 ------------------------------------------QAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYY  158 (166)
T ss_pred             ------------------------------------------hhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHH
Confidence                                                      0001233334444332  37999999999999999999


Q ss_pred             HHHHHH
Q psy17467        245 IAAELM  250 (730)
Q Consensus       245 Li~~l~  250 (730)
                      +.+.+.
T Consensus       159 ~~~~~~  164 (166)
T cd01893         159 AQKAVL  164 (166)
T ss_pred             HHHHhc
Confidence            988764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04154 Arl2 Arl2 subfamily

Probab=99.89  E-value=1.7e-22  Score=196.28  Aligned_cols=156  Identities=23%  Similarity=0.315  Sum_probs=122.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      +..+||+++|++|||||||++++.+..+ ..+.||+|.  ....+.+++  +.+++|||||++.+..++..+++++|+++
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~--~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   86 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGF--QIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDALI   86 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCcccc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            4458999999999999999999998754 455678773  334555664  78999999999999999999999999999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      +|||++++.+|+.+..|+..+....                              ...+.|+++|+||+|+.+.      
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~p~iiv~nK~Dl~~~------  130 (173)
T cd04154          87 WVVDSSDRLRLDDCKRELKELLQEE------------------------------RLAGATLLILANKQDLPGA------  130 (173)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCh------------------------------hhcCCCEEEEEECcccccC------
Confidence            9999999999999888887764321                              1246788888998888521      


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH-----hcCCeEEEEecCCCCChH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK-----RHDMYYLETSAKASDNVE  239 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak-----~lg~~fvEtSAktG~GVe  239 (730)
                                                                    ...++...+.+     ..++++++|||++|.|++
T Consensus       131 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  164 (173)
T cd04154         131 ----------------------------------------------LSEEEIREALELDKISSHHWRIQPCSAVTGEGLL  164 (173)
T ss_pred             ----------------------------------------------CCHHHHHHHhCccccCCCceEEEeccCCCCcCHH
Confidence                                                          12233333332     345689999999999999


Q ss_pred             HHHHHHHH
Q psy17467        240 KLFMQIAA  247 (730)
Q Consensus       240 eLFe~Li~  247 (730)
                      ++|++++.
T Consensus       165 ~l~~~l~~  172 (173)
T cd04154         165 QGIDWLVD  172 (173)
T ss_pred             HHHHHHhc
Confidence            99999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.89  E-value=2.9e-22  Score=198.04  Aligned_cols=159  Identities=21%  Similarity=0.357  Sum_probs=121.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||+++|++|||||||++++..+.+.. +.||++.++.  .+..++  +.+++|||+|++++..++..+++++|++|+|
T Consensus        17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v   91 (182)
T PTZ00133         17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEYKN--LKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV   91 (182)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            4899999999999999999999888864 6688885543  344444  8899999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||++++.+|+.+..|+..+....                              ...+.|++|||||.|+.+.        
T Consensus        92 ~D~t~~~s~~~~~~~l~~~~~~~------------------------------~~~~~piilv~NK~Dl~~~--------  133 (182)
T PTZ00133         92 VDSNDRERIGDAREELERMLSED------------------------------ELRDAVLLVFANKQDLPNA--------  133 (182)
T ss_pred             EeCCCHHHHHHHHHHHHHHHhCH------------------------------hhcCCCEEEEEeCCCCCCC--------
Confidence            99999999998887776653211                              0135688888899988531        


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHH-HHH----HHhcCCeEEEEecCCCCChHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVG-EDF----AKRHDMYYLETSAKASDNVEKL  241 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~-~~l----ak~lg~~fvEtSAktG~GVeeL  241 (730)
                                                                  ++.++. ..+    +....+.+++|||++|.||+++
T Consensus       134 --------------------------------------------~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~  169 (182)
T PTZ00133        134 --------------------------------------------MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEG  169 (182)
T ss_pred             --------------------------------------------CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHH
Confidence                                                        111111 111    1122345779999999999999


Q ss_pred             HHHHHHHHHHH
Q psy17467        242 FMQIAAELMEK  252 (730)
Q Consensus       242 Fe~Li~~l~e~  252 (730)
                      |++|.+.+.++
T Consensus       170 ~~~l~~~i~~~  180 (182)
T PTZ00133        170 LDWLSANIKKS  180 (182)
T ss_pred             HHHHHHHHHHh
Confidence            99999877543

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.89  E-value=2.5e-22  Score=203.31  Aligned_cols=138  Identities=20%  Similarity=0.321  Sum_probs=110.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeC-----CeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN-----NERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vd-----g~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      +||+++|+++||||||+++|.++.|...+.||+|.++..+.+.++     +..+.++||||+|++++..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999999999999988888888774     567999999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE  157 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~  157 (730)
                      +|+|||++++.||+++..|++++........+... .  .         ..+.......+++|++|||||.|+.+
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~-~--~---------~~~~~~~~~~~~~PiilVGnK~Dl~~  143 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLV-T--N---------GDYDSEQFGGNQIPLLVIGTKLDQIP  143 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhcccccccc-c--c---------ccccccccCCCCceEEEEEECccchh
Confidence            99999999999999999999999765422111100 0  0         00000111235788888888888853

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>KOG4252|consensus

Probab=99.89  E-value=6.4e-24  Score=207.30  Aligned_cols=171  Identities=33%  Similarity=0.596  Sum_probs=157.6

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      +++.-||++|+|..+|||||++.||+.+-|...|..++|.++....+.+++..+.+.+|||+|+++|+.+.+.||++|.+
T Consensus        16 d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa   95 (246)
T KOG4252|consen   16 DYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQA   95 (246)
T ss_pred             hhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccc
Confidence            57788999999999999999999999999999999999999999999999888999999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      .+|||+.+|+.||+.+.+|++.+...+                                ..+|.|+|-||+||.++    
T Consensus        96 ~vLVFSTTDr~SFea~~~w~~kv~~e~--------------------------------~~IPtV~vqNKIDlved----  139 (246)
T KOG4252|consen   96 SVLVFSTTDRYSFEATLEWYNKVQKET--------------------------------ERIPTVFVQNKIDLVED----  139 (246)
T ss_pred             eEEEEecccHHHHHHHHHHHHHHHHHh--------------------------------ccCCeEEeeccchhhHh----
Confidence            999999999999999999999997765                                56788888899998754    


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF  242 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF  242 (730)
                                                                    .+++.++++.+++.+.+.++.+|++...||..+|
T Consensus       140 ----------------------------------------------s~~~~~evE~lak~l~~RlyRtSvked~NV~~vF  173 (246)
T KOG4252|consen  140 ----------------------------------------------SQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVF  173 (246)
T ss_pred             ----------------------------------------------hhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHH
Confidence                                                          3577889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy17467        243 MQIAAELMEKLAE  255 (730)
Q Consensus       243 e~Li~~l~e~~~~  255 (730)
                      ..+++.+.+...+
T Consensus       174 ~YLaeK~~q~~kq  186 (246)
T KOG4252|consen  174 AYLAEKLTQQKKQ  186 (246)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998776555

>cd04157 Arl6 Arl6 subfamily

Probab=99.89  E-value=2.6e-22  Score=190.43  Aligned_cols=116  Identities=20%  Similarity=0.328  Sum_probs=94.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +|+++|++|||||||+++|+++.+ ...+.||+|....  .+...  .+.+++|||||++++..++..+++++|++|+||
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEKG--NLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEEC--CEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998763 5567788885432  23333  488999999999999999999999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD  156 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~  156 (730)
                      |++++.+|+.+..|+..+.+..                            .....+.|+++|+||+|+.
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~p~iiv~NK~Dl~  117 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHP----------------------------DIKHRRVPILFFANKMDLP  117 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCc----------------------------ccccCCCCEEEEEeCcccc
Confidence            9999999999888888775421                            0112578899999999985

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.87  E-value=7.7e-22  Score=187.50  Aligned_cols=158  Identities=22%  Similarity=0.399  Sum_probs=118.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEee
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYD   88 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyD   88 (730)
                      ||+++|++|||||||+++|.++.+.. +.||.+.++  ..+... ..+.+.+||++|++.+...+..+++++|++|+|||
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            58999999999999999999988764 457877544  334443 35789999999999999999999999999999999


Q ss_pred             cCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHh
Q psy17467         89 ISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMV  168 (730)
Q Consensus        89 vtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~  168 (730)
                      ++++.++..+..|+.++.+..                              ...+.|+++|+||+|+.+....       
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~piilv~nK~Dl~~~~~~-------  119 (160)
T cd04156          77 SSDEARLDESQKELKHILKNE------------------------------HIKGVPVVLLANKQDLPGALTA-------  119 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhch------------------------------hhcCCCEEEEEECcccccCcCH-------
Confidence            999999999888888775421                              1146789999999998531100       


Q ss_pred             hhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChH-HHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467        169 FVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTE-VGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA  247 (730)
Q Consensus       169 ~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~e-e~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~  247 (730)
                                                              +++... ....++...++.+++|||++|+||+++|++|.+
T Consensus       120 ----------------------------------------~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156         120 ----------------------------------------EEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             ----------------------------------------HHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence                                                    000000 011223334567999999999999999998864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd00879 Sar1 Sar1 subfamily

Probab=99.87  E-value=1.9e-21  Score=191.12  Aligned_cols=117  Identities=19%  Similarity=0.296  Sum_probs=95.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      ...+||+++|++|||||||++++.++.+. .+.||.+..  ...+.+++  +.+.+||+||+..+...+..+++++|+++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii   91 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV   91 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            44689999999999999999999988774 466777643  34566666  77899999999999889999999999999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD  156 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~  156 (730)
                      +|+|+++..+|+....|+..+.+..                              ...+.|+++++||.|+.
T Consensus        92 lV~D~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~pvivv~NK~Dl~  133 (190)
T cd00879          92 FLVDAADPERFQESKEELDSLLSDE------------------------------ELANVPFLILGNKIDLP  133 (190)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcCc------------------------------cccCCCEEEEEeCCCCC
Confidence            9999999999988888888765421                              12467889999999985

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.87  E-value=6e-22  Score=192.29  Aligned_cols=114  Identities=25%  Similarity=0.397  Sum_probs=96.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEee
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYD   88 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyD   88 (730)
                      +|+++|++|||||||++++.+. +...+.||+|..  ...+.+++  +.+++||++|+..+..++..++++||++|+|||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999999976 777788998854  34555554  889999999999999999999999999999999


Q ss_pred             cCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467         89 ISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE  157 (730)
Q Consensus        89 vtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~  157 (730)
                      ++++.+|+.+..|+..+.+..                              ...+.|+++|+||.|+.+
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~------------------------------~~~~~piliv~NK~Dl~~  114 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHP------------------------------RVSGKPILVLANKQDKKN  114 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCc------------------------------cccCCcEEEEEeCCCCcC
Confidence            999999999999998876432                              114678999999999864

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.86  E-value=7e-21  Score=196.38  Aligned_cols=209  Identities=19%  Similarity=0.158  Sum_probs=153.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh-------hhhHhhhcccc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR-------SITQSYYRSAH   81 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~-------sl~~~~~r~AD   81 (730)
                      +|+++|.+|||||||++++++........+..+.+.....+.+++  ..+++||+||..+..       .....+++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            799999999999999999998765444445555566677777877  679999999975432       12235789999


Q ss_pred             EEEEEeecCCCC-chhhhHHHHHHHHHHhcccceEEEEecc---------------CchhhHHHHHhhhcccccCCCCCc
Q psy17467         82 ALILVYDISCQP-TFDCLTDWLREIEEYASFKVLRVLVGGT---------------SGLKIVNEMASAAGLLCTVDPALA  145 (730)
Q Consensus        82 aIILVyDvtd~e-Sfe~L~~wleeI~~~~~~~~piVLVg~k---------------~dl~~~~~i~~~~g~~~~~~~~~P  145 (730)
                      ++++|+|++++. +.+.+.+.++...-......|.+.+..+               .|.+.+++++.++|++++      
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~------  153 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNA------  153 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeE------
Confidence            999999998865 4445555555433222333343333322               577899999999999664      


Q ss_pred             eEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC
Q psy17467        146 TALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM  225 (730)
Q Consensus       146 VVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~  225 (730)
                      .+.+-....+++                          ..+...++..|.|.++|+||+|+    ++.+++..++..  .
T Consensus       154 ~v~~~~~~~~~~--------------------------~~~~~~~~~~y~p~iiV~NK~Dl----~~~~~~~~~~~~--~  201 (233)
T cd01896         154 DVLIREDITVDD--------------------------LIDVIEGNRVYIPCLYVYNKIDL----ISIEELDLLARQ--P  201 (233)
T ss_pred             EEEEccCCCHHH--------------------------HHHHHhCCceEeeEEEEEECccC----CCHHHHHHHhcC--C
Confidence            334433344433                          45677888999999999999997    355666666654  3


Q ss_pred             eEEEEecCCCCChHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcc
Q psy17467        226 YYLETSAKASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNI  274 (730)
Q Consensus       226 ~fvEtSAktG~GVeeLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~~  274 (730)
                      .++++||++|.|++++|+.+.+.+                 +++|+|++
T Consensus       202 ~~~~~SA~~g~gi~~l~~~i~~~L-----------------~~irvy~k  233 (233)
T cd01896         202 NSVVISAEKGLNLDELKERIWDKL-----------------GLIRVYTK  233 (233)
T ss_pred             CEEEEcCCCCCCHHHHHHHHHHHh-----------------CcEEEecC
Confidence            589999999999999999999988                 88898874

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.86  E-value=5.7e-21  Score=182.75  Aligned_cols=153  Identities=25%  Similarity=0.406  Sum_probs=116.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCC------CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVF------PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f------~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      +|+++|++|||||||++++++...      ...+.||++.+.  ..+.+++  ..+.+|||||++.+..++..+++.+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            589999999999999999986422      334456776554  3455554  789999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +|+|+|++++.+++.+..|+..+.+..                              ...+.|+++++||+|+...    
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~p~ilv~NK~D~~~~----  122 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNE------------------------------ALEGVPLLILANKQDLPDA----  122 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhCh------------------------------hhcCCCEEEEEEccccccC----
Confidence            999999999999998888888775432                              1246788888999997531    


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH-------hcCCeEEEEecCCC
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK-------RHDMYYLETSAKAS  235 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak-------~lg~~fvEtSAktG  235 (730)
                                                                      +..++...+..       ..+++++++||++|
T Consensus       123 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  154 (167)
T cd04160         123 ------------------------------------------------LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG  154 (167)
T ss_pred             ------------------------------------------------CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence                                                            11122222221       23468999999999


Q ss_pred             CChHHHHHHHHH
Q psy17467        236 DNVEKLFMQIAA  247 (730)
Q Consensus       236 ~GVeeLFe~Li~  247 (730)
                      .|++++|++|++
T Consensus       155 ~gv~e~~~~l~~  166 (167)
T cd04160         155 TGVREGIEWLVE  166 (167)
T ss_pred             cCHHHHHHHHhc
Confidence            999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04151 Arl1 Arl1 subfamily

Probab=99.86  E-value=1.4e-21  Score=186.55  Aligned_cols=152  Identities=22%  Similarity=0.314  Sum_probs=113.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEee
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYD   88 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyD   88 (730)
                      ||+++|++|||||||++++..+.+.. +.||++.+..  .+.+.  .+.+++|||||++.+..++..+++.+|++|+|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTYK--NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            69999999999999999998887754 4577775543  34444  4789999999999999999999999999999999


Q ss_pred             cCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHh
Q psy17467         89 ISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMV  168 (730)
Q Consensus        89 vtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~  168 (730)
                      ++++.++.....|+..+.+..                              ..++.|+++|+||+|+.+..         
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~piiiv~nK~Dl~~~~---------  116 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEE------------------------------ELKGAVLLVFANKQDMPGAL---------  116 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhch------------------------------hhcCCcEEEEEeCCCCCCCC---------
Confidence            999988877766655443211                              11467889999999985210         


Q ss_pred             hhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHH-HHH----HHhcCCeEEEEecCCCCChHHHHH
Q psy17467        169 FVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVG-EDF----AKRHDMYYLETSAKASDNVEKLFM  243 (730)
Q Consensus       169 ~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~-~~l----ak~lg~~fvEtSAktG~GVeeLFe  243 (730)
                                                                 ..++. ..+    ....+.++++|||++|.||+++|+
T Consensus       117 -------------------------------------------~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  153 (158)
T cd04151         117 -------------------------------------------SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD  153 (158)
T ss_pred             -------------------------------------------CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence                                                       00111 111    112345799999999999999999


Q ss_pred             HHHH
Q psy17467        244 QIAA  247 (730)
Q Consensus       244 ~Li~  247 (730)
                      ++++
T Consensus       154 ~l~~  157 (158)
T cd04151         154 WLVN  157 (158)
T ss_pred             HHhc
Confidence            9875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.86  E-value=8.5e-21  Score=185.22  Aligned_cols=154  Identities=24%  Similarity=0.355  Sum_probs=119.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||+++|++|||||||+++++++.+.. +.||++.++  ..+.+++  +.+.+||+||++.+...+..+++++|++|+|
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V   89 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV--EEIVYKN--IRFLMWDIGGQESLRSSWNTYYTNTDAVILV   89 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce--EEEEECC--eEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            4799999999999999999999988875 568887554  3444454  8899999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||++++++|..+..|+..+.+..                              ...+.|+++++||+|+.+.        
T Consensus        90 ~D~s~~~~~~~~~~~l~~~~~~~------------------------------~~~~~p~viv~NK~Dl~~~--------  131 (174)
T cd04153          90 IDSTDRERLPLTKEELYKMLAHE------------------------------DLRKAVLLVLANKQDLKGA--------  131 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHhch------------------------------hhcCCCEEEEEECCCCCCC--------
Confidence            99999999988887777664321                              0145788888999998521        


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHH-HHHHH----HhcCCeEEEEecCCCCChHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEV-GEDFA----KRHDMYYLETSAKASDNVEKL  241 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee-~~~la----k~lg~~fvEtSAktG~GVeeL  241 (730)
                                                                  ++.++ .+.+.    +..++.+++|||++|.||+++
T Consensus       132 --------------------------------------------~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~  167 (174)
T cd04153         132 --------------------------------------------MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEG  167 (174)
T ss_pred             --------------------------------------------CCHHHHHHHhCcccccCCceEEEecccCCCCCHHHH
Confidence                                                        11111 12221    234567999999999999999


Q ss_pred             HHHHHH
Q psy17467        242 FMQIAA  247 (730)
Q Consensus       242 Fe~Li~  247 (730)
                      |++|.+
T Consensus       168 ~~~l~~  173 (174)
T cd04153         168 LDWIAS  173 (174)
T ss_pred             HHHHhc
Confidence            999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.85  E-value=5.5e-21  Score=181.55  Aligned_cols=152  Identities=20%  Similarity=0.321  Sum_probs=119.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEee
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYD   88 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyD   88 (730)
                      ||+++|.+|||||||+++++++.+ ..+.++.+...  ..+.+++  +.+.+||+||+..+...+..+++++|++++|||
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            699999999999999999998874 44567777444  3445554  789999999999999999999999999999999


Q ss_pred             cCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHh
Q psy17467         89 ISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMV  168 (730)
Q Consensus        89 vtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~  168 (730)
                      ++++.++..+..|+..+....                              ..++.|+++++||+|+.+..         
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~piiiv~nK~D~~~~~---------  116 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEE------------------------------ELKGVPLLIFANKQDLPGAL---------  116 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCc------------------------------ccCCCcEEEEeeccCCcccc---------
Confidence            999999999988888875532                              12578899999999985311         


Q ss_pred             hhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHH-----HHhcCCeEEEEecCCCCChHHHHH
Q psy17467        169 FVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDF-----AKRHDMYYLETSAKASDNVEKLFM  243 (730)
Q Consensus       169 ~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~l-----ak~lg~~fvEtSAktG~GVeeLFe  243 (730)
                                                                 ..++..+.     +....++++++||++|.|++++|+
T Consensus       117 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878         117 -------------------------------------------SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             -------------------------------------------CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence                                                       11111111     123456899999999999999999


Q ss_pred             HHHH
Q psy17467        244 QIAA  247 (730)
Q Consensus       244 ~Li~  247 (730)
                      +|..
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            9864

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.84  E-value=4.4e-20  Score=182.36  Aligned_cols=117  Identities=17%  Similarity=0.252  Sum_probs=94.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      +..+||+++|.+|||||||++++.++.+.. +.||.+..  ...+.+++  +.+.+||++|+..+..++..+++++|++|
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT--SEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            455899999999999999999999887653 44665532  33445555  78999999999999999999999999999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD  156 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~  156 (730)
                      +|+|++++.+++....|+.++.+..                              ...+.|+++|+||.|+.
T Consensus        90 ~vvD~~~~~~~~~~~~~l~~l~~~~------------------------------~~~~~piliv~NK~Dl~  131 (184)
T smart00178       90 YLVDAYDKERFAESKRELDALLSDE------------------------------ELATVPFLILGNKIDAP  131 (184)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcCh------------------------------hhcCCCEEEEEeCcccc
Confidence            9999999999988888877764321                              11467899999999985

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PTZ00099 rab6; Provisional

Probab=99.84  E-value=6.7e-20  Score=181.29  Aligned_cols=141  Identities=40%  Similarity=0.651  Sum_probs=124.3

Q ss_pred             CCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHh
Q psy17467         30 GVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA  109 (730)
Q Consensus        30 ~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~  109 (730)
                      +.|...+.||+|.++..+.+.+++..+.+.||||+|++++..++..++++||++|+|||++++.||+.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            56788899999999999999999999999999999999999999999999999999999999999999999999986542


Q ss_pred             cccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcc
Q psy17467        110 SFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASL  189 (730)
Q Consensus       110 ~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~  189 (730)
                                                     .+++|++|||||+||.+                                
T Consensus        83 -------------------------------~~~~piilVgNK~DL~~--------------------------------   99 (176)
T PTZ00099         83 -------------------------------GKDVIIALVGNKTDLGD--------------------------------   99 (176)
T ss_pred             -------------------------------CCCCeEEEEEECccccc--------------------------------
Confidence                                           14567788888888742                                


Q ss_pred             cCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHHHHHH
Q psy17467        190 EGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME  251 (730)
Q Consensus       190 ~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~~l~e  251 (730)
                                        .+.++.+++..++..+++.|+||||++|.||+++|++|++.+.+
T Consensus       100 ------------------~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099        100 ------------------LRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             ------------------ccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence                              24577888999999999999999999999999999999988744

>cd01890 LepA LepA subfamily

Probab=99.83  E-value=6.5e-20  Score=177.67  Aligned_cols=154  Identities=19%  Similarity=0.241  Sum_probs=112.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC-------CCCCCCCc------ceeeEEEEEEE--e---CCeEEEEEEEeCCCchhhh
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV-------FPPGQGAT------IGVDFMIKTVE--I---NNERIKLQIWDTAGQERFR   70 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~-------f~~~~~pT------ig~d~~~~~i~--v---dg~~v~LqLwDTpG~e~~~   70 (730)
                      +|+++|++|||||||+++|++..       +...+.++      .|.++....+.  +   ++..+.+++|||||++++.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            58999999999999999998732       22222222      23344443333  3   5677899999999999999


Q ss_pred             hhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEec
Q psy17467         71 SITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALAS  150 (730)
Q Consensus        71 sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVG  150 (730)
                      ..+..+++.+|++|+|||+++..+++.+..|.....                                   .+.|+++|+
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~-----------------------------------~~~~iiiv~  126 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE-----------------------------------NNLEIIPVI  126 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH-----------------------------------cCCCEEEEE
Confidence            999999999999999999999888877766643221                                   346778888


Q ss_pred             cCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC---eE
Q psy17467        151 DKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM---YY  227 (730)
Q Consensus       151 NK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~---~f  227 (730)
                      ||+|+.+.                                                    ...+...++++.+++   .+
T Consensus       127 NK~Dl~~~----------------------------------------------------~~~~~~~~~~~~~~~~~~~~  154 (179)
T cd01890         127 NKIDLPSA----------------------------------------------------DPERVKQQIEDVLGLDPSEA  154 (179)
T ss_pred             ECCCCCcC----------------------------------------------------CHHHHHHHHHHHhCCCcccE
Confidence            88887421                                                    011223455556665   38


Q ss_pred             EEEecCCCCChHHHHHHHHHHH
Q psy17467        228 LETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       228 vEtSAktG~GVeeLFe~Li~~l  249 (730)
                      +++||++|.||+++|+++.+.+
T Consensus       155 ~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         155 ILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EEeeccCCCCHHHHHHHHHhhC
Confidence            9999999999999999998654

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.83  E-value=2e-20  Score=174.51  Aligned_cols=152  Identities=24%  Similarity=0.385  Sum_probs=119.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeec
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDI   89 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDv   89 (730)
                      |+++|++|||||||++++.+..+...+.|+.+.+..  .+..++  +.+.+||++|+..+...+..+++++|++++|+|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            899999999999999999999999988899886654  344444  7899999999999999999999999999999999


Q ss_pred             CCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhh
Q psy17467         90 SCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVF  169 (730)
Q Consensus        90 td~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~  169 (730)
                      +++.++..+..|+..+....                              ...+.|+++|+||+|+.....         
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~p~iiv~nK~D~~~~~~---------  118 (159)
T cd04159          78 ADRTALEAAKNELHDLLEKP------------------------------SLEGIPLLVLGNKNDLPGALS---------  118 (159)
T ss_pred             CCHHHHHHHHHHHHHHHcCh------------------------------hhcCCCEEEEEeCccccCCcC---------
Confidence            99999988877777764321                              114678889999999753110         


Q ss_pred             hhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHH-HH----HHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467        170 VAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVG-ED----FAKRHDMYYLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       170 ~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~-~~----lak~lg~~fvEtSAktG~GVeeLFe~  244 (730)
                                                                 .++. ..    .....+++++++||++|.|++++|++
T Consensus       119 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  155 (159)
T cd04159         119 -------------------------------------------VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW  155 (159)
T ss_pred             -------------------------------------------HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence                                                       0000 00    01123467999999999999999999


Q ss_pred             HHH
Q psy17467        245 IAA  247 (730)
Q Consensus       245 Li~  247 (730)
                      +.+
T Consensus       156 l~~  158 (159)
T cd04159         156 LIK  158 (159)
T ss_pred             Hhh
Confidence            864

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PLN00023 GTP-binding protein; Provisional

Probab=99.83  E-value=8e-20  Score=196.32  Aligned_cols=133  Identities=24%  Similarity=0.430  Sum_probs=109.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCC-------------eEEEEEEEeCCCchhhhh
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINN-------------ERIKLQIWDTAGQERFRS   71 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg-------------~~v~LqLwDTpG~e~~~s   71 (730)
                      ...+||+|+|+.|||||||+++|.++.|...+.+|+|.++..+.+.+++             +.+.++||||+|+++|..
T Consensus        19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs   98 (334)
T PLN00023         19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD   98 (334)
T ss_pred             ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence            3568999999999999999999999999988999999988888787752             568899999999999999


Q ss_pred             hhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEecc
Q psy17467         72 ITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASD  151 (730)
Q Consensus        72 l~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGN  151 (730)
                      ++..+++++|++|+|||++++.||+++..|++++........|.. .+                  .....++|++||||
T Consensus        99 L~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~-s~------------------~~~~~~ipIILVGN  159 (334)
T PLN00023         99 CRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLG-SG------------------GPGGLPVPYIVIGN  159 (334)
T ss_pred             hhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccc-cc------------------cccCCCCcEEEEEE
Confidence            999999999999999999999999999999999976531100000 00                  00013578899999


Q ss_pred             CCCcc
Q psy17467        152 KTDLD  156 (730)
Q Consensus       152 K~DL~  156 (730)
                      |+||.
T Consensus       160 K~DL~  164 (334)
T PLN00023        160 KADIA  164 (334)
T ss_pred             Ccccc
Confidence            99985

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.83  E-value=1.5e-19  Score=173.12  Aligned_cols=155  Identities=17%  Similarity=0.182  Sum_probs=107.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh---------hhhHhhhcc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR---------SITQSYYRS   79 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~---------sl~~~~~r~   79 (730)
                      +|+++|++|||||||+++|++..+.....+..+.+.....+.+++  +.+++|||||.....         .........
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKY--LRWQVIDTPGLLDRPLEERNTIEMQAITALAHL   79 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCc--eEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence            699999999999999999999887544333333233333444443  789999999974211         000111123


Q ss_pred             ccEEEEEeecCCCCch--hhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467         80 AHALILVYDISCQPTF--DCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE  157 (730)
Q Consensus        80 ADaIILVyDvtd~eSf--e~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~  157 (730)
                      +|++|+|+|++++.++  +....|+..+....                                .+.|+++|+||+|+.+
T Consensus        80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--------------------------------~~~pvilv~NK~Dl~~  127 (168)
T cd01897          80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF--------------------------------KNKPVIVVLNKIDLLT  127 (168)
T ss_pred             cCcEEEEEeCCcccccchHHHHHHHHHHHhhc--------------------------------CcCCeEEEEEccccCc
Confidence            6899999999988765  55566777765321                                3678889999999853


Q ss_pred             hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCC
Q psy17467        158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDN  237 (730)
Q Consensus       158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~G  237 (730)
                      ..                                                  .+  .+..++++..+.++++|||++|.|
T Consensus       128 ~~--------------------------------------------------~~--~~~~~~~~~~~~~~~~~Sa~~~~g  155 (168)
T cd01897         128 FE--------------------------------------------------DL--SEIEEEEELEGEEVLKISTLTEEG  155 (168)
T ss_pred             hh--------------------------------------------------hH--HHHHHhhhhccCceEEEEecccCC
Confidence            21                                                  11  113445555567899999999999


Q ss_pred             hHHHHHHHHHHH
Q psy17467        238 VEKLFMQIAAEL  249 (730)
Q Consensus       238 VeeLFe~Li~~l  249 (730)
                      ++++|+++.+.+
T Consensus       156 i~~l~~~l~~~~  167 (168)
T cd01897         156 VDEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998765

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.82  E-value=1.9e-19  Score=177.26  Aligned_cols=160  Identities=25%  Similarity=0.410  Sum_probs=124.5

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      .++..+||+++|.+|+|||||++++..+.+.. ..||.|.  ....+.+++  +.+.+||++|+..++.+|+.|+.++|+
T Consensus        10 ~~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~--~~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~   84 (175)
T PF00025_consen   10 SKKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGF--NIEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADG   84 (175)
T ss_dssp             TTTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSE--EEEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESE
T ss_pred             ccCcEEEEEEECCCccchHHHHHHhhhccccc-cCccccc--ccceeeeCc--EEEEEEeccccccccccceeeccccce
Confidence            34667999999999999999999999876543 5688874  445666676  789999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +|+|+|.++++.+......+.++....                              ...+.|+++++||.|+.+.    
T Consensus        85 iIfVvDssd~~~l~e~~~~L~~ll~~~------------------------------~~~~~piLIl~NK~D~~~~----  130 (175)
T PF00025_consen   85 IIFVVDSSDPERLQEAKEELKELLNDP------------------------------ELKDIPILILANKQDLPDA----  130 (175)
T ss_dssp             EEEEEETTGGGGHHHHHHHHHHHHTSG------------------------------GGTTSEEEEEEESTTSTTS----
T ss_pred             eEEEEecccceeecccccchhhhcchh------------------------------hcccceEEEEeccccccCc----
Confidence            999999999998888877777765432                              1146788888899987531    


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHH------HhcCCeEEEEecCCCC
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFA------KRHDMYYLETSAKASD  236 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~la------k~lg~~fvEtSAktG~  236 (730)
                                                                      .+.++.....      ....+.++.|||++|+
T Consensus       131 ------------------------------------------------~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~  162 (175)
T PF00025_consen  131 ------------------------------------------------MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGE  162 (175)
T ss_dssp             ------------------------------------------------STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTB
T ss_pred             ------------------------------------------------chhhHHHhhhhhhhcccCCceEEEeeeccCCc
Confidence                                                            1122222111      2334578999999999


Q ss_pred             ChHHHHHHHHHHH
Q psy17467        237 NVEKLFMQIAAEL  249 (730)
Q Consensus       237 GVeeLFe~Li~~l  249 (730)
                      |+.+.|+||.+.+
T Consensus       163 Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  163 GVDEGLEWLIEQI  175 (175)
T ss_dssp             THHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcC
Confidence            9999999998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.82  E-value=1.1e-19  Score=170.13  Aligned_cols=134  Identities=18%  Similarity=0.229  Sum_probs=98.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCch-----hhhhhhHhhhccccEE
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE-----RFRSITQSYYRSAHAL   83 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e-----~~~sl~~~~~r~ADaI   83 (730)
                      ||+++|++|||||||+++|.+..+.  +.+|.+.++       .+     .+|||||..     .+..+.. .+++||++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~-------~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEY-------ND-----GAIDTPGEYVENRRLYSALIV-TAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEE-------cC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence            8999999999999999999988652  344544322       22     689999973     2333333 58899999


Q ss_pred             EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      |+|||++++.++.. ..|.+.+                                     ..|+++|+||+|+.+      
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~-------------------------------------~~p~ilv~NK~Dl~~------  102 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF-------------------------------------VKPVIGLVTKIDLAE------  102 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc-------------------------------------cCCeEEEEEeeccCC------
Confidence            99999999999866 2343221                                     126677777777742      


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLF  242 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLF  242 (730)
                                                                   +.+..++++++++..+. +++++||++|.|++++|
T Consensus       103 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  137 (142)
T TIGR02528       103 ---------------------------------------------ADVDIERAKELLETAGAEPIFEISSVDEQGLEALV  137 (142)
T ss_pred             ---------------------------------------------cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHH
Confidence                                                         23345677788887776 79999999999999999


Q ss_pred             HHHH
Q psy17467        243 MQIA  246 (730)
Q Consensus       243 e~Li  246 (730)
                      +++.
T Consensus       138 ~~l~  141 (142)
T TIGR02528       138 DYLN  141 (142)
T ss_pred             HHHh
Confidence            9874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04155 Arl3 Arl3 subfamily

Probab=99.82  E-value=2.5e-19  Score=172.62  Aligned_cols=117  Identities=23%  Similarity=0.368  Sum_probs=93.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      ...+||+++|++|||||||++++.+..+.. +.|+.|.+.  ..+.+++  ..+.+||++|+..+...+..+++.+|+++
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii   86 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLI   86 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence            346899999999999999999999876643 457777433  3455555  67899999999988888899999999999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD  156 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~  156 (730)
                      +|+|+++..++.....|+..+....                              ...+.|+++++||+|+.
T Consensus        87 ~v~D~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~p~ivv~nK~D~~  128 (173)
T cd04155          87 YVIDSADKKRLEEAGAELVELLEEE------------------------------KLAGVPVLVFANKQDLA  128 (173)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhCh------------------------------hhcCCCEEEEEECCCCc
Confidence            9999999988988877776654321                              12457888888999875

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01898 Obg Obg subfamily

Probab=99.81  E-value=3.4e-19  Score=170.71  Aligned_cols=159  Identities=17%  Similarity=0.176  Sum_probs=111.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCch----hhhhhhHhh---hcccc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE----RFRSITQSY---YRSAH   81 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e----~~~sl~~~~---~r~AD   81 (730)
                      +|+++|++|||||||++++.+........|..+.+.....+.+++ ...+.+|||||..    ....+...+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            589999999999999999997665333223333333334444544 2479999999963    222233343   44699


Q ss_pred             EEEEEeecCCC-CchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhH
Q psy17467         82 ALILVYDISCQ-PTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEH  160 (730)
Q Consensus        82 aIILVyDvtd~-eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~  160 (730)
                      ++|+|+|++++ .+++.+..|.+++.....                             ...+.|+++|+||+|+.+.. 
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~-----------------------------~~~~~p~ivv~NK~Dl~~~~-  130 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNP-----------------------------ELLEKPRIVVLNKIDLLDEE-  130 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCc-----------------------------cccccccEEEEEchhcCCch-
Confidence            99999999999 899999999998865421                             01356778888888875311 


Q ss_pred             HHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHh-cCCeEEEEecCCCCChH
Q psy17467        161 VLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR-HDMYYLETSAKASDNVE  239 (730)
Q Consensus       161 ~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~-lg~~fvEtSAktG~GVe  239 (730)
                                                                        ...+....+... .+.++++|||++|.|++
T Consensus       131 --------------------------------------------------~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  160 (170)
T cd01898         131 --------------------------------------------------ELFELLKELLKELWGKPVFPISALTGEGLD  160 (170)
T ss_pred             --------------------------------------------------hhHHHHHHHHhhCCCCCEEEEecCCCCCHH
Confidence                                                              112333444444 36789999999999999


Q ss_pred             HHHHHHHHH
Q psy17467        240 KLFMQIAAE  248 (730)
Q Consensus       240 eLFe~Li~~  248 (730)
                      ++|+++.+.
T Consensus       161 ~l~~~i~~~  169 (170)
T cd01898         161 ELLRKLAEL  169 (170)
T ss_pred             HHHHHHHhh
Confidence            999998764

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG0073|consensus

Probab=99.81  E-value=5.1e-19  Score=171.28  Aligned_cols=168  Identities=26%  Similarity=0.329  Sum_probs=135.0

Q ss_pred             CCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhcccc
Q psy17467          2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAH   81 (730)
Q Consensus         2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~AD   81 (730)
                      +.++..++|.|+|..|+|||||+++|.+.. .....||.|  +..+++.+++  +++++||.+|+...++.|+.||..+|
T Consensus        11 k~kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestd   85 (185)
T KOG0073|consen   11 KLKEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTD   85 (185)
T ss_pred             HhhhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccC
Confidence            446678999999999999999999999766 455568888  6778888888  89999999999999999999999999


Q ss_pred             EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467         82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV  161 (730)
Q Consensus        82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~  161 (730)
                      ++|+|+|.+|+..++.....+.++....                         ++     .+.|+++++||.|+...-+ 
T Consensus        86 glIwvvDssD~~r~~e~~~~L~~lL~ee-------------------------rl-----aG~~~Lvlank~dl~~~l~-  134 (185)
T KOG0073|consen   86 GLIWVVDSSDRMRMQECKQELTELLVEE-------------------------RL-----AGAPLLVLANKQDLPGALS-  134 (185)
T ss_pred             eEEEEEECchHHHHHHHHHHHHHHHhhh-------------------------hh-----cCCceEEEEecCcCccccC-
Confidence            9999999999999988776666653311                         11     4578899999999852100 


Q ss_pred             HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCC-hHHHHHHHHhcCCeEEEEecCCCCChHH
Q psy17467        162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIP-TEVGEDFAKRHDMYYLETSAKASDNVEK  240 (730)
Q Consensus       162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs-~ee~~~lak~lg~~fvEtSAktG~GVee  240 (730)
                                                                    .+.+. .-+.+++++...++++-|||.+|+++.+
T Consensus       135 ----------------------------------------------~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~  168 (185)
T KOG0073|consen  135 ----------------------------------------------LEEISKALDLEELAKSHHWRLVKCSAVTGEDLLE  168 (185)
T ss_pred             ----------------------------------------------HHHHHHhhCHHHhccccCceEEEEeccccccHHH
Confidence                                                          00111 1234566788889999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy17467        241 LFMQIAAELME  251 (730)
Q Consensus       241 LFe~Li~~l~e  251 (730)
                      -|+++++.+.+
T Consensus       169 gidWL~~~l~~  179 (185)
T KOG0073|consen  169 GIDWLCDDLMS  179 (185)
T ss_pred             HHHHHHHHHHH
Confidence            99999999876

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.81  E-value=1.4e-18  Score=160.18  Aligned_cols=157  Identities=27%  Similarity=0.414  Sum_probs=126.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||+++|.+|+|||||++++.+..++..+.++++.+.....+.+++..+.+.+||+||+..+...+..+.+.+++++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            37999999999999999999999998888888998888777788888778999999999999999999999999999999


Q ss_pred             eecCCC-CchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         87 YDISCQ-PTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        87 yDvtd~-eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      +|+... .++.... .|...+.....                               .+.|+++++||+|+.+.      
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-------------------------------~~~p~ivv~nK~D~~~~------  123 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAE-------------------------------SNVPIILVGNKIDLRDA------  123 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcc-------------------------------cCCcEEEEEEcccCCcc------
Confidence            999887 7777665 67766654321                               16678888888888531      


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~  244 (730)
                                                                   .+..+....+....+.+++++||++|.|++++|+.
T Consensus       124 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~  158 (161)
T TIGR00231       124 ---------------------------------------------KLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKI  158 (161)
T ss_pred             ---------------------------------------------hhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHH
Confidence                                                         12223334444444668999999999999999987


Q ss_pred             H
Q psy17467        245 I  245 (730)
Q Consensus       245 L  245 (730)
                      |
T Consensus       159 l  159 (161)
T TIGR00231       159 V  159 (161)
T ss_pred             h
Confidence            6

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.81  E-value=2.1e-18  Score=172.99  Aligned_cols=180  Identities=37%  Similarity=0.563  Sum_probs=137.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||+++|++|||||||+++|.++.+...+.++++..+........+..+.+.+|||+|++++..++..|+.+++++++|
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            38999999999999999999999999999999998777777777766678999999999999999999999999999999


Q ss_pred             eecCCCCc-hhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         87 YDISCQPT-FDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        87 yDvtd~eS-fe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      ||.++..+ ++....|.+.+.....                               .+.|+++++||+|+.........+
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~-------------------------------~~~~iilv~nK~Dl~~~~~~~~~~  133 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAP-------------------------------DDVPILLVGNKIDLFDEQSSSEEI  133 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCC-------------------------------CCceEEEEecccccccchhHHHHH
Confidence            99999544 5566779999876541                               367888999999998653221100


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc---CCeEEEEecC--CCCChHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH---DMYYLETSAK--ASDNVEK  240 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l---g~~fvEtSAk--tG~GVee  240 (730)
                                                         .++   ..+.+..+.....+...   ...+++|||+  ++.||++
T Consensus       134 -----------------------------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~  175 (219)
T COG1100         134 -----------------------------------LNQ---LNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNE  175 (219)
T ss_pred             -----------------------------------Hhh---hhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHH
Confidence                                               000   00122233333333222   3348999999  9999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy17467        241 LFMQIAAELMEKLAE  255 (730)
Q Consensus       241 LFe~Li~~l~e~~~~  255 (730)
                      +|..+.+.+.+....
T Consensus       176 ~~~~~~~~~~~~~~~  190 (219)
T COG1100         176 LFKELLRKLLEEIEK  190 (219)
T ss_pred             HHHHHHHHHHHhhhh
Confidence            999999988654433

>cd04171 SelB SelB subfamily

Probab=99.80  E-value=6.8e-19  Score=166.73  Aligned_cols=82  Identities=20%  Similarity=0.255  Sum_probs=63.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC---CCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG---VFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~---~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      .|+++|++|||||||+++|++.   .+...+.++.+.+.....+.+.+ ...+++|||||++++......+++++|++|+
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            5899999999999999999963   33333334444455555555552 3679999999999887766778889999999


Q ss_pred             EeecCC
Q psy17467         86 VYDISC   91 (730)
Q Consensus        86 VyDvtd   91 (730)
                      |+|+++
T Consensus        81 V~d~~~   86 (164)
T cd04171          81 VVAADE   86 (164)
T ss_pred             EEECCC
Confidence            999987

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.78  E-value=5.1e-18  Score=184.21  Aligned_cols=165  Identities=18%  Similarity=0.134  Sum_probs=122.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhh----hhhhH---hhhcc
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERF----RSITQ---SYYRS   79 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~----~sl~~---~~~r~   79 (730)
                      .-.|+|||.||||||||++++++.+.....+|..+..+....+.+.+ ...+.+||+||..+-    ..+..   ..++.
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~  236 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIER  236 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence            34689999999999999999998776655566666677777777732 246899999997431    12333   34667


Q ss_pred             ccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhh
Q psy17467         80 AHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDE  159 (730)
Q Consensus        80 ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e  159 (730)
                      ++++|+|+|+++.++++++..|.+++..+..                             .-.+.|+++|+||+|+.+..
T Consensus       237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~-----------------------------~L~~kp~IIV~NKiDL~~~~  287 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSP-----------------------------ELADKPRILVLNKIDLLDEE  287 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhh-----------------------------hcccCCeEEEEECcccCCch
Confidence            9999999999998899999999999876531                             01356888888888875321


Q ss_pred             HHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChH
Q psy17467        160 HVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVE  239 (730)
Q Consensus       160 ~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVe  239 (730)
                                                                        .+..++.+.++...++++++|||++++||+
T Consensus       288 --------------------------------------------------~~~~~~~~~~~~~~~~~i~~iSAktg~GI~  317 (335)
T PRK12299        288 --------------------------------------------------EEREKRAALELAALGGPVFLISAVTGEGLD  317 (335)
T ss_pred             --------------------------------------------------hHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence                                                              112233444555667889999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy17467        240 KLFMQIAAELME  251 (730)
Q Consensus       240 eLFe~Li~~l~e  251 (730)
                      ++|++|.+.+.+
T Consensus       318 eL~~~L~~~l~~  329 (335)
T PRK12299        318 ELLRALWELLEE  329 (335)
T ss_pred             HHHHHHHHHHHh
Confidence            999999887743

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.77  E-value=6.5e-18  Score=159.37  Aligned_cols=148  Identities=20%  Similarity=0.205  Sum_probs=110.7

Q ss_pred             EEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh------hhHhhhc--cccEE
Q psy17467         12 LVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS------ITQSYYR--SAHAL   83 (730)
Q Consensus        12 VLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s------l~~~~~r--~ADaI   83 (730)
                      ++|.+|||||||++++++..+...+.++++.+.....+.+++  ..+.+|||||+..+..      ++..++.  ++|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999999876666667777777777788876  5789999999876653      3556664  99999


Q ss_pred             EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      |+|+|++++.+.   ..|...+..                                  .+.|+++|+||+|+.+..    
T Consensus        79 i~v~d~~~~~~~---~~~~~~~~~----------------------------------~~~~~iiv~NK~Dl~~~~----  117 (158)
T cd01879          79 VNVVDATNLERN---LYLTLQLLE----------------------------------LGLPVVVALNMIDEAEKR----  117 (158)
T ss_pred             EEEeeCCcchhH---HHHHHHHHH----------------------------------cCCCEEEEEehhhhcccc----
Confidence            999999875442   233333321                                  246888888999985311    


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM  243 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe  243 (730)
                                                                    .+. .+.+.++..++++++++||++|.|++++|+
T Consensus       118 ----------------------------------------------~~~-~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~  150 (158)
T cd01879         118 ----------------------------------------------GIK-IDLDKLSELLGVPVVPTSARKGEGIDELKD  150 (158)
T ss_pred             ----------------------------------------------cch-hhHHHHHHhhCCCeEEEEccCCCCHHHHHH
Confidence                                                          111 223566777789999999999999999999


Q ss_pred             HHHHHH
Q psy17467        244 QIAAEL  249 (730)
Q Consensus       244 ~Li~~l  249 (730)
                      .+.+.+
T Consensus       151 ~l~~~~  156 (158)
T cd01879         151 AIAELA  156 (158)
T ss_pred             HHHHHh
Confidence            988753

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01878 HflX HflX subfamily

Probab=99.77  E-value=6.3e-18  Score=168.62  Aligned_cols=156  Identities=22%  Similarity=0.196  Sum_probs=112.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh---------hhhhhHh
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER---------FRSITQS   75 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~---------~~sl~~~   75 (730)
                      +..++|+|+|++|||||||++++++..+.....+..+.+.....+.+++. ..+.+|||||..+         +.... .
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~  116 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E  116 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence            44589999999999999999999998754443333344455555555543 3689999999732         11111 2


Q ss_pred             hhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCc
Q psy17467         76 YYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDL  155 (730)
Q Consensus        76 ~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL  155 (730)
                      .+.++|++++|+|++++.+++.+..|.+.+....                               ..+.|+++|+||+|+
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~-------------------------------~~~~~viiV~NK~Dl  165 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELG-------------------------------AEDIPMILVLNKIDL  165 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcC-------------------------------cCCCCEEEEEEcccc
Confidence            3678999999999999999988877777664321                               135788889999998


Q ss_pred             chhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCC
Q psy17467        156 DEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKAS  235 (730)
Q Consensus       156 ~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG  235 (730)
                      .+...                                                       ....+...+.++++|||++|
T Consensus       166 ~~~~~-------------------------------------------------------~~~~~~~~~~~~~~~Sa~~~  190 (204)
T cd01878         166 LDDEE-------------------------------------------------------LEERLEAGRPDAVFISAKTG  190 (204)
T ss_pred             CChHH-------------------------------------------------------HHHHhhcCCCceEEEEcCCC
Confidence            53210                                                       00334455678999999999


Q ss_pred             CChHHHHHHHHHH
Q psy17467        236 DNVEKLFMQIAAE  248 (730)
Q Consensus       236 ~GVeeLFe~Li~~  248 (730)
                      .|++++|++|...
T Consensus       191 ~gi~~l~~~L~~~  203 (204)
T cd01878         191 EGLDELLEAIEEL  203 (204)
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999998764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK04213 GTP-binding protein; Provisional

Probab=99.75  E-value=5.3e-18  Score=168.58  Aligned_cols=81  Identities=26%  Similarity=0.322  Sum_probs=58.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCC-----------chhhhhhh
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG-----------QERFRSIT   73 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG-----------~e~~~sl~   73 (730)
                      ...++|+++|++|||||||+++++++.+...+.|+++  +....+.+.    .+.+|||||           ++.+...+
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT--RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI   80 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee--eCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence            4568999999999999999999999887766666554  444444444    489999999           56666666


Q ss_pred             Hhhhc-cc---cEEEEEeecCC
Q psy17467         74 QSYYR-SA---HALILVYDISC   91 (730)
Q Consensus        74 ~~~~r-~A---DaIILVyDvtd   91 (730)
                      ..++. .+   +++++|+|.++
T Consensus        81 ~~~~~~~~~~~~~vi~v~d~~~  102 (201)
T PRK04213         81 VRYIEDNADRILAAVLVVDGKS  102 (201)
T ss_pred             HHHHHhhhhhheEEEEEEeCcc
Confidence            66665 44   56666666543

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.74  E-value=6.5e-17  Score=154.35  Aligned_cols=85  Identities=20%  Similarity=0.211  Sum_probs=68.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeC-CeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN-NERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vd-g~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      .|+|+|++|||||||+++|+++.+...+.++.+.+.....+..+ +....+.+|||||+..+...+..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            38999999999999999999988876655555544444444443 13478999999999999888888999999999999


Q ss_pred             ecCCCC
Q psy17467         88 DISCQP   93 (730)
Q Consensus        88 Dvtd~e   93 (730)
                      |+++..
T Consensus        82 d~~~~~   87 (168)
T cd01887          82 AADDGV   87 (168)
T ss_pred             ECCCCc
Confidence            998854

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.74  E-value=2e-17  Score=164.43  Aligned_cols=84  Identities=21%  Similarity=0.389  Sum_probs=68.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc--CCCCCCC------------CCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhH
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ--GVFPPGQ------------GATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQ   74 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~--~~f~~~~------------~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~   74 (730)
                      +|+++|.+|||||||+++|++  +.+...+            .++.|.++......++++.+.+++|||||++++...+.
T Consensus         4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~   83 (194)
T cd01891           4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE   83 (194)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence            799999999999999999997  5554332            23345555555555655668899999999999999999


Q ss_pred             hhhccccEEEEEeecCCC
Q psy17467         75 SYYRSAHALILVYDISCQ   92 (730)
Q Consensus        75 ~~~r~ADaIILVyDvtd~   92 (730)
                      .+++++|++++|||+++.
T Consensus        84 ~~~~~~d~~ilV~d~~~~  101 (194)
T cd01891          84 RVLSMVDGVLLLVDASEG  101 (194)
T ss_pred             HHHHhcCEEEEEEECCCC
Confidence            999999999999999874

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.73  E-value=5.7e-17  Score=181.94  Aligned_cols=151  Identities=22%  Similarity=0.213  Sum_probs=115.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhh--------hHhh
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSI--------TQSY   76 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl--------~~~~   76 (730)
                      ..+||+++|++|||||||+|+|++... .....|..+.++....+.+++  +.+.+|||||..++...        ...+
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            458999999999999999999998754 334457777788888888887  56799999998654332        2357


Q ss_pred             hccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467         77 YRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD  156 (730)
Q Consensus        77 ~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~  156 (730)
                      ++++|++|+|||++++.+++..  |+..+..                                  .+.|+++|+||+|+.
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~----------------------------------~~~piIlV~NK~Dl~  323 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK----------------------------------SKKPFILVLNKIDLK  323 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH--HHHHHhh----------------------------------CCCCEEEEEECccCC
Confidence            8899999999999999888765  6655421                                  346777888888874


Q ss_pred             hhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCC
Q psy17467        157 EDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASD  236 (730)
Q Consensus       157 ~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~  236 (730)
                      .                                                   .     +...+++.++++++++||++ .
T Consensus       324 ~---------------------------------------------------~-----~~~~~~~~~~~~~~~vSak~-~  346 (442)
T TIGR00450       324 I---------------------------------------------------N-----SLEFFVSSKVLNSSNLSAKQ-L  346 (442)
T ss_pred             C---------------------------------------------------c-----chhhhhhhcCCceEEEEEec-C
Confidence            2                                                   0     12344566778899999998 6


Q ss_pred             ChHHHHHHHHHHHHH
Q psy17467        237 NVEKLFMQIAAELME  251 (730)
Q Consensus       237 GVeeLFe~Li~~l~e  251 (730)
                      ||+++|+.+.+.+.+
T Consensus       347 gI~~~~~~L~~~i~~  361 (442)
T TIGR00450       347 KIKALVDLLTQKINA  361 (442)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999888754

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.73  E-value=2.1e-17  Score=150.30  Aligned_cols=117  Identities=34%  Similarity=0.613  Sum_probs=88.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFP--PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~--~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      ||+|+|++|||||||+++|.+..+.  ..+.++.+.+.......+......+.+||++|++.+...+..++.++|++|+|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999998876  22233334445555667777777799999999998888877889999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCC
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTD  154 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~D  154 (730)
                      ||++++.||+.+.+|+..+.....                             ..+++|+++||||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~-----------------------------~~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRK-----------------------------RDKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHH-----------------------------HSSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHc-----------------------------cCCCCCEEEEEeccC
Confidence            999999999998665444433321                             125688888899987

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.73  E-value=2.7e-17  Score=157.82  Aligned_cols=161  Identities=22%  Similarity=0.231  Sum_probs=108.7

Q ss_pred             EEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeC-CeEEEEEEEeCCCchh----hhhhh---HhhhccccEE
Q psy17467         12 LVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN-NERIKLQIWDTAGQER----FRSIT---QSYYRSAHAL   83 (730)
Q Consensus        12 VLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vd-g~~v~LqLwDTpG~e~----~~sl~---~~~~r~ADaI   83 (730)
                      ++|++|||||||++++++..+.....+..+.+.....+.++ +  ..+.+|||||..+    ...+.   ..+++.+|++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i   78 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI   78 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence            58999999999999999887533322333334444555565 5  6789999999732    12222   3457789999


Q ss_pred             EEEeecCCC------CchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467         84 ILVYDISCQ------PTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE  157 (730)
Q Consensus        84 ILVyDvtd~------eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~  157 (730)
                      ++|+|++++      .+++.+..|..++........                        .....+.|+++|+||+|+..
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~p~ivv~NK~Dl~~  134 (176)
T cd01881          79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETI------------------------LGLLTAKPVIYVLNKIDLDD  134 (176)
T ss_pred             EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhH------------------------HHHHhhCCeEEEEEchhcCc
Confidence            999999998      578888888887754321000                        00013678888889999864


Q ss_pred             hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCC
Q psy17467        158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDN  237 (730)
Q Consensus       158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~G  237 (730)
                      ...                                                  .........+...+..+++|||++|.|
T Consensus       135 ~~~--------------------------------------------------~~~~~~~~~~~~~~~~~~~~Sa~~~~g  164 (176)
T cd01881         135 AEE--------------------------------------------------LEEELVRELALEEGAEVVPISAKTEEG  164 (176)
T ss_pred             hhH--------------------------------------------------HHHHHHHHHhcCCCCCEEEEehhhhcC
Confidence            221                                                  111112334445567899999999999


Q ss_pred             hHHHHHHHHHH
Q psy17467        238 VEKLFMQIAAE  248 (730)
Q Consensus       238 VeeLFe~Li~~  248 (730)
                      ++++++.+++.
T Consensus       165 l~~l~~~l~~~  175 (176)
T cd01881         165 LDELIRAIYEL  175 (176)
T ss_pred             HHHHHHHHHhh
Confidence            99999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.72  E-value=1.4e-16  Score=144.40  Aligned_cols=154  Identities=44%  Similarity=0.762  Sum_probs=119.2

Q ss_pred             EEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecC
Q psy17467         12 LVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDIS   90 (730)
Q Consensus        12 VLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvt   90 (730)
                      |+|.+|+|||||++++.+... .....++. .+.........+....+.+||++|...+......+++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999998877 45555555 6777777777777889999999999888888888999999999999999


Q ss_pred             CCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhh
Q psy17467         91 CQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFV  170 (730)
Q Consensus        91 d~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~  170 (730)
                      ++.+++.+..|.......                              ....+.|+++++||.|+.....          
T Consensus        80 ~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~ivv~nk~D~~~~~~----------  119 (157)
T cd00882          80 DRESFENVKEWLLLILIN------------------------------KEGENIPIILVGNKIDLPEERV----------  119 (157)
T ss_pred             CHHHHHHHHHHHHHHHHh------------------------------hccCCCcEEEEEeccccccccc----------
Confidence            999998888774222211                              1236788888999999864211          


Q ss_pred             hhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChH-HHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467        171 AVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTE-VGEDFAKRHDMYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       171 a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~e-e~~~lak~lg~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                                              .... .........+++++++||+++.|++++++++.
T Consensus       120 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882         120 ----------------------------------------VSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             ----------------------------------------hHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence                                                    0011 13344555678999999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.72  E-value=1e-16  Score=181.18  Aligned_cols=154  Identities=23%  Similarity=0.207  Sum_probs=109.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh--------hhhhhHhhh
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER--------FRSITQSYY   77 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~--------~~sl~~~~~   77 (730)
                      ..+|+|+|.+|||||||+|+|++..+. ....|+++.+.....+.+++  ..+.+|||||.+.        +......++
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~  115 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVAM  115 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence            368999999999999999999987643 34556666666666677777  4588999999752        333455678


Q ss_pred             ccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467         78 RSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE  157 (730)
Q Consensus        78 r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~  157 (730)
                      +.||++|+|||+++..++.. ..|...+..                                  .+.|+++|+||+|+..
T Consensus       116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~----------------------------------~~~piilV~NK~Dl~~  160 (472)
T PRK03003        116 RTADAVLFVVDATVGATATD-EAVARVLRR----------------------------------SGKPVILAANKVDDER  160 (472)
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHH----------------------------------cCCCEEEEEECccCCc
Confidence            99999999999999877653 234333321                                  3578888888888742


Q ss_pred             hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCC
Q psy17467        158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDN  237 (730)
Q Consensus       158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~G  237 (730)
                      .                                                     ..+..+.++..++ ..++|||++|.|
T Consensus       161 ~-----------------------------------------------------~~~~~~~~~~g~~-~~~~iSA~~g~g  186 (472)
T PRK03003        161 G-----------------------------------------------------EADAAALWSLGLG-EPHPVSALHGRG  186 (472)
T ss_pred             c-----------------------------------------------------chhhHHHHhcCCC-CeEEEEcCCCCC
Confidence            1                                                     0111222222333 346999999999


Q ss_pred             hHHHHHHHHHHHHH
Q psy17467        238 VEKLFMQIAAELME  251 (730)
Q Consensus       238 VeeLFe~Li~~l~e  251 (730)
                      |+++|+.++..+.+
T Consensus       187 i~eL~~~i~~~l~~  200 (472)
T PRK03003        187 VGDLLDAVLAALPE  200 (472)
T ss_pred             cHHHHHHHHhhccc
Confidence            99999999987743

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.72  E-value=1e-16  Score=173.60  Aligned_cols=162  Identities=18%  Similarity=0.181  Sum_probs=119.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh----hhhHhh---hcc
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR----SITQSY---YRS   79 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~----sl~~~~---~r~   79 (730)
                      .-.|++||.||||||||++++++.......+|..+..+....+.+++ ...+.+|||||..+..    .+...+   +..
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            35799999999999999999998775555445555566666666654 3568999999975321    233444   457


Q ss_pred             ccEEEEEeecCCC---CchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467         80 AHALILVYDISCQ---PTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD  156 (730)
Q Consensus        80 ADaIILVyDvtd~---eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~  156 (730)
                      +|++|+|+|+++.   .+++++..|.+++..+..                             .-.+.|+++|+||+|+.
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~-----------------------------~l~~kp~IIV~NK~DL~  286 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSP-----------------------------ELAEKPRIVVLNKIDLL  286 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhh-----------------------------hhccCCEEEEEeCccCC
Confidence            9999999999987   678888888888765431                             01357888888888885


Q ss_pred             hhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCC
Q psy17467        157 EDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASD  236 (730)
Q Consensus       157 ~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~  236 (730)
                      +..                                                   ...+..+.+++..+.+++++||++++
T Consensus       287 ~~~---------------------------------------------------~~~~~~~~l~~~~~~~vi~iSAktg~  315 (329)
T TIGR02729       287 DEE---------------------------------------------------ELAELLKELKKALGKPVFPISALTGE  315 (329)
T ss_pred             ChH---------------------------------------------------HHHHHHHHHHHHcCCcEEEEEccCCc
Confidence            321                                                   11234455666778889999999999


Q ss_pred             ChHHHHHHHHHHH
Q psy17467        237 NVEKLFMQIAAEL  249 (730)
Q Consensus       237 GVeeLFe~Li~~l  249 (730)
                      ||+++|+.+.+.+
T Consensus       316 GI~eL~~~I~~~l  328 (329)
T TIGR02729       316 GLDELLYALAELL  328 (329)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.71  E-value=1.9e-16  Score=172.93  Aligned_cols=154  Identities=21%  Similarity=0.197  Sum_probs=110.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCch---------hhhhhhHhh
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE---------RFRSITQSY   76 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e---------~~~sl~~~~   76 (730)
                      ..++|+++|.+|||||||+|+|++..+.....+..+.++....+.+.+. ..+.+|||+|..         .+.+.. ..
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~  265 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EE  265 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence            4589999999999999999999998765555555556777777877432 578999999972         222222 24


Q ss_pred             hccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467         77 YRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD  156 (730)
Q Consensus        77 ~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~  156 (730)
                      +.+||++|+|+|++++.+++.+..|...+....                               ..+.|+++|+||+|+.
T Consensus       266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~-------------------------------~~~~piIlV~NK~Dl~  314 (351)
T TIGR03156       266 VREADLLLHVVDASDPDREEQIEAVEKVLEELG-------------------------------AEDIPQLLVYNKIDLL  314 (351)
T ss_pred             HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhc-------------------------------cCCCCEEEEEEeecCC
Confidence            789999999999999998888776665554321                               1356788888888875


Q ss_pred             hhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCC
Q psy17467        157 EDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASD  236 (730)
Q Consensus       157 ~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~  236 (730)
                      +..                                                       +...+. ....++++|||++|.
T Consensus       315 ~~~-------------------------------------------------------~v~~~~-~~~~~~i~iSAktg~  338 (351)
T TIGR03156       315 DEP-------------------------------------------------------RIERLE-EGYPEAVFVSAKTGE  338 (351)
T ss_pred             ChH-------------------------------------------------------hHHHHH-hCCCCEEEEEccCCC
Confidence            311                                                       001111 112468999999999


Q ss_pred             ChHHHHHHHHHH
Q psy17467        237 NVEKLFMQIAAE  248 (730)
Q Consensus       237 GVeeLFe~Li~~  248 (730)
                      |++++++.|.+.
T Consensus       339 GI~eL~~~I~~~  350 (351)
T TIGR03156       339 GLDLLLEAIAER  350 (351)
T ss_pred             CHHHHHHHHHhh
Confidence            999999988653

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.70  E-value=6.2e-17  Score=158.06  Aligned_cols=148  Identities=18%  Similarity=0.237  Sum_probs=106.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhh------hhhhHhhh--cc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERF------RSITQSYY--RS   79 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~------~sl~~~~~--r~   79 (730)
                      |+|+++|.||||||||+|++++.+.....+|..+.+.....+.+.+  ..+.++|+||....      ..+...++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            6899999999999999999999988777789888888888898888  67899999996432      22334444  58


Q ss_pred             ccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhh
Q psy17467         80 AHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDE  159 (730)
Q Consensus        80 ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e  159 (730)
                      .|++|.|.|+++.+   .-.....++..                                  -+.|+++|.||+|.....
T Consensus        79 ~D~ii~VvDa~~l~---r~l~l~~ql~e----------------------------------~g~P~vvvlN~~D~a~~~  121 (156)
T PF02421_consen   79 PDLIIVVVDATNLE---RNLYLTLQLLE----------------------------------LGIPVVVVLNKMDEAERK  121 (156)
T ss_dssp             SSEEEEEEEGGGHH---HHHHHHHHHHH----------------------------------TTSSEEEEEETHHHHHHT
T ss_pred             CCEEEEECCCCCHH---HHHHHHHHHHH----------------------------------cCCCEEEEEeCHHHHHHc
Confidence            99999999998732   21222233322                                  356778888888875321


Q ss_pred             HHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChH
Q psy17467        160 HVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVE  239 (730)
Q Consensus       160 ~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVe  239 (730)
                                                                         --..+...+.+.+|++++.+||++|+|++
T Consensus       122 ---------------------------------------------------g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~  150 (156)
T PF02421_consen  122 ---------------------------------------------------GIEIDAEKLSERLGVPVIPVSARTGEGID  150 (156)
T ss_dssp             ---------------------------------------------------TEEE-HHHHHHHHTS-EEEEBTTTTBTHH
T ss_pred             ---------------------------------------------------CCEECHHHHHHHhCCCEEEEEeCCCcCHH
Confidence                                                               11234677888899999999999999999


Q ss_pred             HHHHHH
Q psy17467        240 KLFMQI  245 (730)
Q Consensus       240 eLFe~L  245 (730)
                      ++++.|
T Consensus       151 ~L~~~I  156 (156)
T PF02421_consen  151 ELKDAI  156 (156)
T ss_dssp             HHHHHH
T ss_pred             HHHhhC
Confidence            999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01894 EngA1 EngA1 subfamily

Probab=99.70  E-value=4e-16  Score=146.42  Aligned_cols=146  Identities=18%  Similarity=0.097  Sum_probs=100.5

Q ss_pred             EEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh--------hhHhhhcccc
Q psy17467         11 VLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS--------ITQSYYRSAH   81 (730)
Q Consensus        11 vVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s--------l~~~~~r~AD   81 (730)
                      +++|.+|||||||++++++.... ....+..+.+.......+++  ..+.+|||||...+..        .....++.+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            58999999999999999986521 12234444455555666666  6799999999876543        3345678999


Q ss_pred             EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467         82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV  161 (730)
Q Consensus        82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~  161 (730)
                      ++++|+|.++..+....  ++....+.                                 .+.|+++|+||+|+.+... 
T Consensus        79 ~ii~v~d~~~~~~~~~~--~~~~~~~~---------------------------------~~~piiiv~nK~D~~~~~~-  122 (157)
T cd01894          79 VILFVVDGREGLTPADE--EIAKYLRK---------------------------------SKKPVILVVNKVDNIKEED-  122 (157)
T ss_pred             EEEEEEeccccCCccHH--HHHHHHHh---------------------------------cCCCEEEEEECcccCChHH-
Confidence            99999999876655442  22221111                                 2368888889988863210 


Q ss_pred             HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHH
Q psy17467        162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEK  240 (730)
Q Consensus       162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVee  240 (730)
                                                                           . .......++ .++++||++|.|+++
T Consensus       123 -----------------------------------------------------~-~~~~~~~~~~~~~~~Sa~~~~gv~~  148 (157)
T cd01894         123 -----------------------------------------------------E-AAEFYSLGFGEPIPISAEHGRGIGD  148 (157)
T ss_pred             -----------------------------------------------------H-HHHHHhcCCCCeEEEecccCCCHHH
Confidence                                                                 0 122234555 789999999999999


Q ss_pred             HHHHHHHH
Q psy17467        241 LFMQIAAE  248 (730)
Q Consensus       241 LFe~Li~~  248 (730)
                      +|+++++.
T Consensus       149 l~~~l~~~  156 (157)
T cd01894         149 LLDAILEL  156 (157)
T ss_pred             HHHHHHhh
Confidence            99999864

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR00436 era GTP-binding protein Era

Probab=99.69  E-value=3.2e-16  Score=164.75  Aligned_cols=152  Identities=18%  Similarity=0.146  Sum_probs=102.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh-h-------hhHhhhcc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPP-GQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR-S-------ITQSYYRS   79 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~-~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~-s-------l~~~~~r~   79 (730)
                      +|+++|.||||||||+|+|++.++.. ...|.++.+........++  .++.+|||||..... .       ....++.+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            69999999999999999999987643 2333333333332222333  568999999975321 1       12356789


Q ss_pred             ccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhh
Q psy17467         80 AHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDE  159 (730)
Q Consensus        80 ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e  159 (730)
                      +|++++|+|+++..+++  ..++..+..                                  .+.|+++|+||+|+.+..
T Consensus        80 aDvvl~VvD~~~~~~~~--~~i~~~l~~----------------------------------~~~p~ilV~NK~Dl~~~~  123 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG--EFVLTKLQN----------------------------------LKRPVVLTRNKLDNKFKD  123 (270)
T ss_pred             CCEEEEEEECCCCCchH--HHHHHHHHh----------------------------------cCCCEEEEEECeeCCCHH
Confidence            99999999999877764  333333321                                  356888888998885311


Q ss_pred             HHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCCh
Q psy17467        160 HVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNV  238 (730)
Q Consensus       160 ~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GV  238 (730)
                      .                                                   ..+....++...+. .++++||++|.|+
T Consensus       124 ~---------------------------------------------------~~~~~~~~~~~~~~~~v~~iSA~~g~gi  152 (270)
T TIGR00436       124 K---------------------------------------------------LLPLIDKYAILEDFKDIVPISALTGDNT  152 (270)
T ss_pred             H---------------------------------------------------HHHHHHHHHhhcCCCceEEEecCCCCCH
Confidence            1                                                   01233344444444 7899999999999


Q ss_pred             HHHHHHHHHHH
Q psy17467        239 EKLFMQIAAEL  249 (730)
Q Consensus       239 eeLFe~Li~~l  249 (730)
                      +++++.+.+.+
T Consensus       153 ~~L~~~l~~~l  163 (270)
T TIGR00436       153 SFLAAFIEVHL  163 (270)
T ss_pred             HHHHHHHHHhC
Confidence            99999987655

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>KOG0070|consensus

Probab=99.69  E-value=1.5e-16  Score=157.22  Aligned_cols=163  Identities=23%  Similarity=0.348  Sum_probs=125.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      ...+|+++|..++||||++.+|..++...+ .||+|  +...++.+.+  +.+++||.+|+++++.+|+.|+.+.+++|+
T Consensus        16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiG--fnVE~v~ykn--~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIf   90 (181)
T KOG0070|consen   16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIG--FNVETVEYKN--ISFTVWDVGGQEKLRPLWKHYFQNTQGLIF   90 (181)
T ss_pred             ceEEEEEEeccCCCceeeeEeeccCCcccC-CCccc--cceeEEEEcc--eEEEEEecCCCcccccchhhhccCCcEEEE
Confidence            458999999999999999999999988776 69998  5566777776  899999999999999999999999999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      |.|.+|++.+..+++.+..+.....                              -.+.|+++.+||.|+..--+     
T Consensus        91 VvDS~Dr~Ri~eak~eL~~~l~~~~------------------------------l~~~~llv~aNKqD~~~als-----  135 (181)
T KOG0070|consen   91 VVDSSDRERIEEAKEELHRMLAEPE------------------------------LRNAPLLVFANKQDLPGALS-----  135 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHHcCcc------------------------------cCCceEEEEechhhccccCC-----
Confidence            9999999999888877776654321                              25778888899999853100     


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L  245 (730)
                       .                                         ..++..-+..-.......+..|+|.+|+|+.+.++++
T Consensus       136 -~-----------------------------------------~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl  173 (181)
T KOG0070|consen  136 -A-----------------------------------------AEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWL  173 (181)
T ss_pred             -H-----------------------------------------HHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHH
Confidence             0                                         0011111111111234467889999999999999999


Q ss_pred             HHHHH
Q psy17467        246 AAELM  250 (730)
Q Consensus       246 i~~l~  250 (730)
                      ...+.
T Consensus       174 ~~~~~  178 (181)
T KOG0070|consen  174 SNNLK  178 (181)
T ss_pred             HHHHh
Confidence            88773

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.69  E-value=3.3e-16  Score=151.98  Aligned_cols=138  Identities=19%  Similarity=0.178  Sum_probs=95.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh----hhhHhhhccccEEE
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR----SITQSYYRSAHALI   84 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~----sl~~~~~r~ADaII   84 (730)
                      +|+++|.+|||||||++++.+.. ... .++.       .+.+++.    .+|||||.....    ......++.||++|
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~-~~~-~~~~-------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNY-TLA-RKTQ-------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC-ccC-ccce-------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            79999999999999999977543 211 1222       2233332    269999973211    11123478999999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      +|+|+++..++..  .|+..+.                                   .+.|+++++||+|+.+       
T Consensus        70 ~v~d~~~~~s~~~--~~~~~~~-----------------------------------~~~~ii~v~nK~Dl~~-------  105 (158)
T PRK15467         70 YVHGANDPESRLP--AGLLDIG-----------------------------------VSKRQIAVISKTDMPD-------  105 (158)
T ss_pred             EEEeCCCcccccC--HHHHhcc-----------------------------------CCCCeEEEEEccccCc-------
Confidence            9999999887733  3433320                                   2456777788888732       


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC--eEEEEecCCCCChHHHH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM--YYLETSAKASDNVEKLF  242 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~--~fvEtSAktG~GVeeLF  242 (730)
                                                                    ...+...++++..++  ++++|||++|+||+++|
T Consensus       106 ----------------------------------------------~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~  139 (158)
T PRK15467        106 ----------------------------------------------ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLV  139 (158)
T ss_pred             ----------------------------------------------ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence                                                          123556677777775  89999999999999999


Q ss_pred             HHHHHHH
Q psy17467        243 MQIAAEL  249 (730)
Q Consensus       243 e~Li~~l  249 (730)
                      +.+.+.+
T Consensus       140 ~~l~~~~  146 (158)
T PRK15467        140 DYLASLT  146 (158)
T ss_pred             HHHHHhc
Confidence            9998776

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.69  E-value=5.1e-16  Score=150.39  Aligned_cols=170  Identities=22%  Similarity=0.148  Sum_probs=109.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCC----------------cceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhh
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGA----------------TIGVDFMIKTVEINNERIKLQIWDTAGQERFRSI   72 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~p----------------Tig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl   72 (730)
                      +|+|+|.+|||||||++++++........+                .++.+.....+.+.  ...+.+|||||...+...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence            489999999999999999998776554322                12222223333334  367999999999988888


Q ss_pred             hHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccC
Q psy17467         73 TQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDK  152 (730)
Q Consensus        73 ~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK  152 (730)
                      +..+++.+|++++|+|++++.+.+.. .++..+..                                  .+.|+++++||
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~----------------------------------~~~~i~iv~nK  123 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQTR-EHLRIARE----------------------------------GGLPIIVAINK  123 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH----------------------------------CCCCeEEEEEC
Confidence            88999999999999999887654332 23322211                                  35788999999


Q ss_pred             CCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEec
Q psy17467        153 TDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSA  232 (730)
Q Consensus       153 ~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSA  232 (730)
                      +|+...+........                 .....                 ..-......+..+....+.+++++||
T Consensus       124 ~D~~~~~~~~~~~~~-----------------~~~~~-----------------~~~~~~~~~~~~~~~~~~~~v~~~Sa  169 (189)
T cd00881         124 IDRVGEEDLEEVLRE-----------------IKELL-----------------GLIGFISTKEEGTRNGLLVPIVPGSA  169 (189)
T ss_pred             CCCcchhcHHHHHHH-----------------HHHHH-----------------ccccccchhhhhcccCCcceEEEEec
Confidence            998742211000000                 00000                 00000111122223345678999999


Q ss_pred             CCCCChHHHHHHHHHHH
Q psy17467        233 KASDNVEKLFMQIAAEL  249 (730)
Q Consensus       233 ktG~GVeeLFe~Li~~l  249 (730)
                      ++|.|++++|+.+.+.+
T Consensus       170 ~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         170 LTGIGVEELLEAIVEHL  186 (189)
T ss_pred             ccCcCHHHHHHHHHhhC
Confidence            99999999999998765

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.68  E-value=1.2e-15  Score=142.83  Aligned_cols=146  Identities=21%  Similarity=0.227  Sum_probs=106.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh--------hhHhhhc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS--------ITQSYYR   78 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s--------l~~~~~r   78 (730)
                      ++|+++|++|+|||||++++++.... ....+..+.++....+.+++  ..+.+|||||..++..        .....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            58999999999999999999987642 23345555555555666665  6789999999754432        1234577


Q ss_pred             cccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchh
Q psy17467         79 SAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDED  158 (730)
Q Consensus        79 ~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~  158 (730)
                      .+|++++|+|++++.+..+...|..                                     ..+.|+++|+||+|+.+.
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~-------------------------------------~~~~~vi~v~nK~D~~~~  122 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL-------------------------------------PADKPIIVVLNKSDLLPD  122 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh-------------------------------------hcCCCEEEEEEchhcCCc
Confidence            9999999999999888776553322                                     146788888899998531


Q ss_pred             hHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCCh
Q psy17467        159 EHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNV  238 (730)
Q Consensus       159 e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GV  238 (730)
                      .                                                  ..       .....+.+++++||+++.|+
T Consensus       123 ~--------------------------------------------------~~-------~~~~~~~~~~~~Sa~~~~~v  145 (157)
T cd04164         123 S--------------------------------------------------EL-------LSLLAGKPIIAISAKTGEGL  145 (157)
T ss_pred             c--------------------------------------------------cc-------ccccCCCceEEEECCCCCCH
Confidence            1                                                  00       23344668999999999999


Q ss_pred             HHHHHHHHHHH
Q psy17467        239 EKLFMQIAAEL  249 (730)
Q Consensus       239 eeLFe~Li~~l  249 (730)
                      ++++++|.+.+
T Consensus       146 ~~l~~~l~~~~  156 (157)
T cd04164         146 DELKEALLELA  156 (157)
T ss_pred             HHHHHHHHHhh
Confidence            99999987654

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK15494 era GTPase Era; Provisional

Probab=99.68  E-value=1.1e-15  Score=166.06  Aligned_cols=154  Identities=18%  Similarity=0.272  Sum_probs=104.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh-hhhhhH-------h
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPP-GQGATIGVDFMIKTVEINNERIKLQIWDTAGQER-FRSITQ-------S   75 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~-~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~-~~sl~~-------~   75 (730)
                      ...++|+++|++|||||||+|+|++..+.. ...+..+.+.....+..++  .++.+|||||..+ +..+..       .
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            345799999999999999999999887743 1223333345555666666  5689999999843 222221       3


Q ss_pred             hhccccEEEEEeecCCCCchhhhHH-HHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCC
Q psy17467         76 YYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTD  154 (730)
Q Consensus        76 ~~r~ADaIILVyDvtd~eSfe~L~~-wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~D  154 (730)
                      .+.+||++|+|+|.++  +|..+.. |+..+..                                  .+.|+++|+||+|
T Consensus       128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~----------------------------------~~~p~IlViNKiD  171 (339)
T PRK15494        128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRS----------------------------------LNIVPIFLLNKID  171 (339)
T ss_pred             HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh----------------------------------cCCCEEEEEEhhc
Confidence            4779999999999655  5666643 4444422                                  1235566778888


Q ss_pred             cchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC--CeEEEEec
Q psy17467        155 LDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD--MYYLETSA  232 (730)
Q Consensus       155 L~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg--~~fvEtSA  232 (730)
                      +.+                                                   .  ..+++.+++...+  ..++++||
T Consensus       172 l~~---------------------------------------------------~--~~~~~~~~l~~~~~~~~i~~iSA  198 (339)
T PRK15494        172 IES---------------------------------------------------K--YLNDIKAFLTENHPDSLLFPISA  198 (339)
T ss_pred             Ccc---------------------------------------------------c--cHHHHHHHHHhcCCCcEEEEEec
Confidence            742                                                   1  1234444444443  57999999


Q ss_pred             CCCCChHHHHHHHHHHH
Q psy17467        233 KASDNVEKLFMQIAAEL  249 (730)
Q Consensus       233 ktG~GVeeLFe~Li~~l  249 (730)
                      ++|.|++++|++|...+
T Consensus       199 ktg~gv~eL~~~L~~~l  215 (339)
T PRK15494        199 LSGKNIDGLLEYITSKA  215 (339)
T ss_pred             cCccCHHHHHHHHHHhC
Confidence            99999999999998765

>KOG1486|consensus

Probab=99.68  E-value=7.9e-16  Score=158.03  Aligned_cols=245  Identities=18%  Similarity=0.156  Sum_probs=195.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhH-------hhhccc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQ-------SYYRSA   80 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~-------~~~r~A   80 (730)
                      -+|+++|.|.||||||+..++........+...+.+..+..+.++|  ..+++.|.||..+-.+..+       ...+.|
T Consensus        63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArta  140 (364)
T KOG1486|consen   63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVARTA  140 (364)
T ss_pred             eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeecc
Confidence            5899999999999999999998777666667777788889999999  7799999999754433222       346789


Q ss_pred             cEEEEEeecCCCCchh-hhHHHHHHHHHHhcccceEEEEecc---------------CchhhHHHHHhhhcccccCCCCC
Q psy17467         81 HALILVYDISCQPTFD-CLTDWLREIEEYASFKVLRVLVGGT---------------SGLKIVNEMASAAGLLCTVDPAL  144 (730)
Q Consensus        81 DaIILVyDvtd~eSfe-~L~~wleeI~~~~~~~~piVLVg~k---------------~dl~~~~~i~~~~g~~~~~~~~~  144 (730)
                      |.|++|.|.+..+.-. -+...++.+....++..|-+.+..+               .+..-+..++.+|.++++.    
T Consensus       141 DlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Nae----  216 (364)
T KOG1486|consen  141 DLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAE----  216 (364)
T ss_pred             cEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccce----
Confidence            9999999999766544 4455677765555555666555443               7778889999999997652    


Q ss_pred             ceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC
Q psy17467        145 ATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD  224 (730)
Q Consensus       145 PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg  224 (730)
                        +++-.  |..                        ..-+++.+.++..|.+++-|-||+|    +++-|+..++|+.-+
T Consensus       217 --vl~Re--D~t------------------------~DdfIDvi~gnr~Y~~ClYvYnKID----~vs~eevdrlAr~Pn  264 (364)
T KOG1486|consen  217 --VLFRE--DCT------------------------VDDFIDVIEGNRVYIKCLYVYNKID----QVSIEEVDRLARQPN  264 (364)
T ss_pred             --EEEec--CCC------------------------hHHHHHHHhccceEEEEEEEeeccc----eecHHHHHHHhcCCC
Confidence              33322  221                        2236778889999999999999999    589999999999877


Q ss_pred             CeEEEEecCCCCChHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHH-hhc
Q psy17467        225 MYYLETSAKASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQI-VKK  303 (730)
Q Consensus       225 ~~fvEtSAktG~GVeeLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~-~k~  303 (730)
                      -  +-+|+.-..|++.+.+.+.+.+                 .+.|+|+++++..++-..|.++.++.++.++++. |++
T Consensus       265 s--vViSC~m~lnld~lle~iWe~l-----------------~L~rvYtKk~g~~Pdfdd~~vlr~g~tve~~C~~iHr~  325 (364)
T KOG1486|consen  265 S--VVISCNMKLNLDRLLERIWEEL-----------------NLVRVYTKKKGQRPDFDDPLVLRKGSTVEDVCHRIHRT  325 (364)
T ss_pred             c--EEEEeccccCHHHHHHHHHHHh-----------------ceEEEEecCCCCCCCCCCceEEeCCCcHHHHHHHHHHH
Confidence            6  6678888899999999999998                 8999999999998888899999999999999887 888


Q ss_pred             CCCCce
Q psy17467        304 FPNIDI  309 (730)
Q Consensus       304 ~p~~~~  309 (730)
                      +...|.
T Consensus       326 l~~qfk  331 (364)
T KOG1486|consen  326 LAAQFK  331 (364)
T ss_pred             HHHhhc
Confidence            776654

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.68  E-value=5.9e-16  Score=179.48  Aligned_cols=155  Identities=17%  Similarity=0.232  Sum_probs=114.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC-------CCCCCCCc------ceeeEEEEEE--Ee---CCeEEEEEEEeCCCchhh
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGV-------FPPGQGAT------IGVDFMIKTV--EI---NNERIKLQIWDTAGQERF   69 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~-------f~~~~~pT------ig~d~~~~~i--~v---dg~~v~LqLwDTpG~e~~   69 (730)
                      =+|+++|..++|||||+++|+...       +...+.++      .|.++....+  .+   ++..+.++||||||+.+|
T Consensus         4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF   83 (595)
T TIGR01393         4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   83 (595)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence            479999999999999999998642       22223222      2445544433  33   566789999999999999


Q ss_pred             hhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEe
Q psy17467         70 RSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALA  149 (730)
Q Consensus        70 ~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLV  149 (730)
                      ...+..+++.||++|+|+|+++..+++....|...+.                                   .+.|+++|
T Consensus        84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-----------------------------------~~ipiIiV  128 (595)
T TIGR01393        84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-----------------------------------NDLEIIPV  128 (595)
T ss_pred             HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-----------------------------------cCCCEEEE
Confidence            9999999999999999999999888887766654331                                   34677888


Q ss_pred             ccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC---e
Q psy17467        150 SDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM---Y  226 (730)
Q Consensus       150 GNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~---~  226 (730)
                      +||+|+.+..                                                    ..+...++++.+++   .
T Consensus       129 iNKiDl~~~~----------------------------------------------------~~~~~~el~~~lg~~~~~  156 (595)
T TIGR01393       129 INKIDLPSAD----------------------------------------------------PERVKKEIEEVIGLDASE  156 (595)
T ss_pred             EECcCCCccC----------------------------------------------------HHHHHHHHHHHhCCCcce
Confidence            8888874210                                                    11222344444554   4


Q ss_pred             EEEEecCCCCChHHHHHHHHHHH
Q psy17467        227 YLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       227 fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                      ++++||++|.||+++|+.+++.+
T Consensus       157 vi~vSAktG~GI~~Lle~I~~~l  179 (595)
T TIGR01393       157 AILASAKTGIGIEEILEAIVKRV  179 (595)
T ss_pred             EEEeeccCCCCHHHHHHHHHHhC
Confidence            89999999999999999998765

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.67  E-value=1.2e-15  Score=150.28  Aligned_cols=159  Identities=18%  Similarity=0.187  Sum_probs=106.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCc----------hhhhhhhH
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ----------ERFRSITQ   74 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~----------e~~~sl~~   74 (730)
                      +...+|+++|.+|||||||++++++..+...+.++.+.+.......+   ...+.||||||.          +.+..+..
T Consensus        22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~   98 (196)
T PRK00454         22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE   98 (196)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence            35689999999999999999999988766555566654443333333   267999999994          34444555


Q ss_pred             hhhccc---cEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEecc
Q psy17467         75 SYYRSA---HALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASD  151 (730)
Q Consensus        75 ~~~r~A---DaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGN  151 (730)
                      .+++.+   +++++|+|.+++.+.... .+...+.                                  ..+.|+++++|
T Consensus        99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~----------------------------------~~~~~~iiv~n  143 (196)
T PRK00454         99 EYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK----------------------------------EYGIPVLIVLT  143 (196)
T ss_pred             HHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH----------------------------------HcCCcEEEEEE
Confidence            566654   678899998876544331 1111111                                  03567888899


Q ss_pred             CCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEe
Q psy17467        152 KTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETS  231 (730)
Q Consensus       152 K~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtS  231 (730)
                      |+|+.+....                                                +...++..+.....+..++++|
T Consensus       144 K~Dl~~~~~~------------------------------------------------~~~~~~i~~~l~~~~~~~~~~S  175 (196)
T PRK00454        144 KADKLKKGER------------------------------------------------KKQLKKVRKALKFGDDEVILFS  175 (196)
T ss_pred             CcccCCHHHH------------------------------------------------HHHHHHHHHHHHhcCCceEEEE
Confidence            9998643211                                                1111233344444467899999


Q ss_pred             cCCCCChHHHHHHHHHHH
Q psy17467        232 AKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       232 AktG~GVeeLFe~Li~~l  249 (730)
                      |++|.|++++|+.+.+.+
T Consensus       176 a~~~~gi~~l~~~i~~~~  193 (196)
T PRK00454        176 SLKKQGIDELRAAIAKWL  193 (196)
T ss_pred             cCCCCCHHHHHHHHHHHh
Confidence            999999999999988765

>cd01889 SelB_euk SelB subfamily

Probab=99.67  E-value=6.1e-16  Score=153.55  Aligned_cols=159  Identities=19%  Similarity=0.192  Sum_probs=100.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC----CCCCC---CC--CcceeeEEEEEEE----------eCCeEEEEEEEeCCCchh
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQG----VFPPG---QG--ATIGVDFMIKTVE----------INNERIKLQIWDTAGQER   68 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~----~f~~~---~~--pTig~d~~~~~i~----------vdg~~v~LqLwDTpG~e~   68 (730)
                      ++|+++|++|||||||+++|++.    .+...   ..  .|.+..+....+.          .++..+.+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999972    12111   11  2333333333332          123357899999999876


Q ss_pred             hhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEE
Q psy17467         69 FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATAL  148 (730)
Q Consensus        69 ~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVL  148 (730)
                      +..........+|++++|+|+++..+.+....|.  +...                                 .+.|+++
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---------------------------------~~~~~ii  125 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---------------------------------LCKKLIV  125 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---------------------------------cCCCEEE
Confidence            5333334456789999999998865544432221  1110                                 2457888


Q ss_pred             eccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHH-----HHH--
Q psy17467        149 ASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGED-----FAK--  221 (730)
Q Consensus       149 VGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~-----lak--  221 (730)
                      ++||+|+......                                                ....++..+     +.+  
T Consensus       126 v~NK~Dl~~~~~~------------------------------------------------~~~~~~~~~~l~~~~~~~~  157 (192)
T cd01889         126 VLNKIDLIPEEER------------------------------------------------ERKIEKMKKKLQKTLEKTR  157 (192)
T ss_pred             EEECcccCCHHHH------------------------------------------------HHHHHHHHHHHHHHHHhcC
Confidence            8999998632210                                                000111111     111  


Q ss_pred             hcCCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467        222 RHDMYYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       222 ~lg~~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                      ..+++++++||++|.|++++++.+.+.+
T Consensus       158 ~~~~~vi~iSa~~g~gi~~L~~~l~~~~  185 (192)
T cd01889         158 FKNSPIIPVSAKPGGGEAELGKDLNNLI  185 (192)
T ss_pred             cCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence            2367899999999999999999998776

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>KOG1673|consensus

Probab=99.66  E-value=4.1e-16  Score=150.01  Aligned_cols=169  Identities=29%  Similarity=0.473  Sum_probs=142.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      ...+||-++|++.+|||||+-+|.++.+...+..+.|..+..+++.+.+..+.+.+||.+|++++..+.+-...++-+|+
T Consensus        18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl   97 (205)
T KOG1673|consen   18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL   97 (205)
T ss_pred             ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence            35789999999999999999999999998888899999999999999999999999999999999999999999999999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      ++||++.++++..+.+|+.+.+...+..                                -.++||+|.|+.-+      
T Consensus        98 FmFDLt~r~TLnSi~~WY~QAr~~NktA--------------------------------iPilvGTKyD~fi~------  139 (205)
T KOG1673|consen   98 FMFDLTRRSTLNSIKEWYRQARGLNKTA--------------------------------IPILVGTKYDLFID------  139 (205)
T ss_pred             EEEecCchHHHHHHHHHHHHHhccCCcc--------------------------------ceEEeccchHhhhc------
Confidence            9999999999999999999987654221                                22567888887421      


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~  244 (730)
                               +|.                              +...--..+++.+|+..+++.++||+-...||+.+|..
T Consensus       140 ---------lp~------------------------------e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~  180 (205)
T KOG1673|consen  140 ---------LPP------------------------------ELQETISRQARKYAKVMNASLFFCSTSHSINVQKIFKI  180 (205)
T ss_pred             ---------CCH------------------------------HHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHHH
Confidence                     010                              00111235788999999999999999999999999998


Q ss_pred             HHHHHH
Q psy17467        245 IAAELM  250 (730)
Q Consensus       245 Li~~l~  250 (730)
                      +...+.
T Consensus       181 vlAklF  186 (205)
T KOG1673|consen  181 VLAKLF  186 (205)
T ss_pred             HHHHHh
Confidence            877663

>cd01895 EngA2 EngA2 subfamily

Probab=99.66  E-value=1.8e-15  Score=143.43  Aligned_cols=155  Identities=23%  Similarity=0.194  Sum_probs=102.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh----------hh-hH
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR----------SI-TQ   74 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~----------sl-~~   74 (730)
                      .++|+++|++|+|||||++++++..+. ....+..+.+.....+..++  ..+.+|||||..+..          .. ..
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            378999999999999999999987643 22334444344445566666  447899999964321          11 12


Q ss_pred             hhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCC
Q psy17467         75 SYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTD  154 (730)
Q Consensus        75 ~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~D  154 (730)
                      ..+..+|++++|+|++++.+.+... ++..+.                                  ..+.|+++++||+|
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~----------------------------------~~~~~~iiv~nK~D  124 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLR-IAGLIL----------------------------------EEGKALVIVVNKWD  124 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHH----------------------------------hcCCCEEEEEeccc
Confidence            3567899999999999988765532 222211                                  13468888899999


Q ss_pred             cchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHH-HHHHHHhc----CCeEEE
Q psy17467        155 LDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEV-GEDFAKRH----DMYYLE  229 (730)
Q Consensus       155 L~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee-~~~lak~l----g~~fvE  229 (730)
                      +.+...                                                  ...++ ...+.+.+    ++++++
T Consensus       125 l~~~~~--------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~  154 (174)
T cd01895         125 LVEKDS--------------------------------------------------KTMKEFKKEIRRKLPFLDYAPIVF  154 (174)
T ss_pred             cCCccH--------------------------------------------------HHHHHHHHHHHhhcccccCCceEE
Confidence            864210                                                  00011 11222222    368999


Q ss_pred             EecCCCCChHHHHHHHHHH
Q psy17467        230 TSAKASDNVEKLFMQIAAE  248 (730)
Q Consensus       230 tSAktG~GVeeLFe~Li~~  248 (730)
                      +||++|.|++++++.+.+.
T Consensus       155 ~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         155 ISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             EeccCCCCHHHHHHHHHHh
Confidence            9999999999999998753

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG0096|consensus

Probab=99.66  E-value=2.6e-16  Score=155.77  Aligned_cols=160  Identities=30%  Similarity=0.585  Sum_probs=137.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      ..+|++++|+.|.|||++++|.+.++|..++.+|+|.+.......-+...+.+..|||+|++.+..+...|+-.+.+.|+
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii   88 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII   88 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence            57999999999999999999999999999999999988877666555557999999999999999999999999999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      .||++.+..+.++..|..++.+.+                                .++|||++|||.|..+..      
T Consensus        89 mFdVtsr~t~~n~~rwhrd~~rv~--------------------------------~NiPiv~cGNKvDi~~r~------  130 (216)
T KOG0096|consen   89 MFDVTSRFTYKNVPRWHRDLVRVR--------------------------------ENIPIVLCGNKVDIKARK------  130 (216)
T ss_pred             EeeeeehhhhhcchHHHHHHHHHh--------------------------------cCCCeeeeccceeccccc------
Confidence            999999999999999999998876                                568888889999886421      


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L  245 (730)
                                                                   + ....-.+-+..++.|+++||+++.|.+.-|.++
T Consensus       131 ---------------------------------------------~-k~k~v~~~rkknl~y~~iSaksn~NfekPFl~L  164 (216)
T KOG0096|consen  131 ---------------------------------------------V-KAKPVSFHRKKNLQYYEISAKSNYNFERPFLWL  164 (216)
T ss_pred             ---------------------------------------------c-ccccceeeecccceeEEeecccccccccchHHH
Confidence                                                         1 011122334567899999999999999999999


Q ss_pred             HHHH
Q psy17467        246 AAEL  249 (730)
Q Consensus       246 i~~l  249 (730)
                      .+.+
T Consensus       165 arKl  168 (216)
T KOG0096|consen  165 ARKL  168 (216)
T ss_pred             hhhh
Confidence            9877

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.66  E-value=2.8e-15  Score=167.33  Aligned_cols=159  Identities=18%  Similarity=0.184  Sum_probs=116.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh----hhhhhHhh---hccc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER----FRSITQSY---YRSA   80 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~----~~sl~~~~---~r~A   80 (730)
                      -.|++||.||||||||++++++.+.....+|..+..+....+.+++ ...+.+||+||..+    ...+...+   +..+
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            4799999999999999999998876555556666666666666652 25689999999743    22233444   4569


Q ss_pred             cEEEEEeecCCC---CchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467         81 HALILVYDISCQ---PTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE  157 (730)
Q Consensus        81 DaIILVyDvtd~---eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~  157 (730)
                      +++|+|+|+++.   .+++++..|.+++..+..                             ...+.|++||+||+|+.+
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~-----------------------------~L~~kP~IVV~NK~DL~~  288 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNP-----------------------------RLLERPQIVVANKMDLPE  288 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHHHHHHHhhhch-----------------------------hccCCcEEEEEeCCCCcC
Confidence            999999999865   677788888888765421                             013567777777777631


Q ss_pred             hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCC
Q psy17467        158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDN  237 (730)
Q Consensus       158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~G  237 (730)
                                                                            ..+..+++++.++.+++++||++++|
T Consensus       289 ------------------------------------------------------~~e~l~~l~~~l~~~i~~iSA~tgeG  314 (424)
T PRK12297        289 ------------------------------------------------------AEENLEEFKEKLGPKVFPISALTGQG  314 (424)
T ss_pred             ------------------------------------------------------CHHHHHHHHHHhCCcEEEEeCCCCCC
Confidence                                                                  12344556666677899999999999


Q ss_pred             hHHHHHHHHHHHH
Q psy17467        238 VEKLFMQIAAELM  250 (730)
Q Consensus       238 VeeLFe~Li~~l~  250 (730)
                      ++++++.+.+.+.
T Consensus       315 I~eL~~~L~~~l~  327 (424)
T PRK12297        315 LDELLYAVAELLE  327 (424)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987763

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.66  E-value=1.2e-15  Score=171.64  Aligned_cols=147  Identities=20%  Similarity=0.201  Sum_probs=111.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhh--------hHhhh
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSI--------TQSYY   77 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl--------~~~~~   77 (730)
                      .++|+++|.+|||||||+|+|++... .....+..+.++....+.+++  ..+.+|||+|..++...        ...++
T Consensus       215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~  292 (449)
T PRK05291        215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAI  292 (449)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence            37999999999999999999998765 344456666677777888877  56899999998654322        22468


Q ss_pred             ccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467         78 RSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE  157 (730)
Q Consensus        78 r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~  157 (730)
                      +++|++|+|||++++.++++...|..                                     ..+.|+++|+||+|+.+
T Consensus       293 ~~aD~il~VvD~s~~~s~~~~~~l~~-------------------------------------~~~~piiiV~NK~DL~~  335 (449)
T PRK05291        293 EEADLVLLVLDASEPLTEEDDEILEE-------------------------------------LKDKPVIVVLNKADLTG  335 (449)
T ss_pred             HhCCEEEEEecCCCCCChhHHHHHHh-------------------------------------cCCCCcEEEEEhhhccc
Confidence            89999999999999988876543322                                     14567888888888852


Q ss_pred             hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCC
Q psy17467        158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDN  237 (730)
Q Consensus       158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~G  237 (730)
                      ..                                                  .+.        ...+.+++++||++|.|
T Consensus       336 ~~--------------------------------------------------~~~--------~~~~~~~i~iSAktg~G  357 (449)
T PRK05291        336 EI--------------------------------------------------DLE--------EENGKPVIRISAKTGEG  357 (449)
T ss_pred             cc--------------------------------------------------hhh--------hccCCceEEEEeeCCCC
Confidence            11                                                  000        23456789999999999


Q ss_pred             hHHHHHHHHHHHH
Q psy17467        238 VEKLFMQIAAELM  250 (730)
Q Consensus       238 VeeLFe~Li~~l~  250 (730)
                      ++++++.+.+.+.
T Consensus       358 I~~L~~~L~~~l~  370 (449)
T PRK05291        358 IDELREAIKELAF  370 (449)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988763

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.65  E-value=1.5e-15  Score=149.10  Aligned_cols=91  Identities=21%  Similarity=0.308  Sum_probs=64.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCc----------hhhhhhhH
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ----------ERFRSITQ   74 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~----------e~~~sl~~   74 (730)
                      +...+|+|+|++|||||||++++++..+...+.++.+.+........++   .+.+|||||.          ..+..+..
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~   92 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLIE   92 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHHH
Confidence            5568999999999999999999998875544445555444444444443   5899999994          23344444


Q ss_pred             hhhcc---ccEEEEEeecCCCCchhhh
Q psy17467         75 SYYRS---AHALILVYDISCQPTFDCL   98 (730)
Q Consensus        75 ~~~r~---ADaIILVyDvtd~eSfe~L   98 (730)
                      .+++.   +|++|+|+|++++.+..+.
T Consensus        93 ~~l~~~~~~~~ii~vvd~~~~~~~~~~  119 (179)
T TIGR03598        93 EYLEKRENLKGVVLLMDIRHPLKELDL  119 (179)
T ss_pred             HHHHhChhhcEEEEEecCCCCCCHHHH
Confidence            56654   5899999999886665554

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK11058 GTPase HflX; Provisional

Probab=99.65  E-value=1.8e-15  Score=169.21  Aligned_cols=155  Identities=21%  Similarity=0.222  Sum_probs=110.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhh--hhhhH------hhhcc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERF--RSITQ------SYYRS   79 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~--~sl~~------~~~r~   79 (730)
                      .+|+++|.+|||||||+|+|++..+.....+..+.+.....+.+.+. ..+.+|||+|..+.  ..++.      ..++.
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            58999999999999999999998766555566666776667777652 25789999997432  22222      33689


Q ss_pred             ccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhh
Q psy17467         80 AHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDE  159 (730)
Q Consensus        80 ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e  159 (730)
                      ||++|+|+|++++.+++.+..|...+....                               ..+.|+++|+||+|+.+..
T Consensus       277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~-------------------------------~~~~pvIiV~NKiDL~~~~  325 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIEAVNTVLEEID-------------------------------AHEIPTLLVMNKIDMLDDF  325 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHHHHHHHHHHhc-------------------------------cCCCCEEEEEEcccCCCch
Confidence            999999999999998888765555443321                               1356888888888885210


Q ss_pred             HHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCe-EEEEecCCCCCh
Q psy17467        160 HVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMY-YLETSAKASDNV  238 (730)
Q Consensus       160 ~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~-fvEtSAktG~GV  238 (730)
                      .                                                   ....    ....+.+ ++++||++|.||
T Consensus       326 ~---------------------------------------------------~~~~----~~~~~~~~~v~ISAktG~GI  350 (426)
T PRK11058        326 E---------------------------------------------------PRID----RDEENKPIRVWLSAQTGAGI  350 (426)
T ss_pred             h---------------------------------------------------HHHH----HHhcCCCceEEEeCCCCCCH
Confidence            0                                                   0000    0113444 588999999999


Q ss_pred             HHHHHHHHHHH
Q psy17467        239 EKLFMQIAAEL  249 (730)
Q Consensus       239 eeLFe~Li~~l  249 (730)
                      +++++.+.+.+
T Consensus       351 deL~e~I~~~l  361 (426)
T PRK11058        351 PLLFQALTERL  361 (426)
T ss_pred             HHHHHHHHHHh
Confidence            99999998876

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.65  E-value=2.3e-15  Score=152.08  Aligned_cols=120  Identities=18%  Similarity=0.309  Sum_probs=92.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccc-cEEEEEe
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSA-HALILVY   87 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~A-DaIILVy   87 (730)
                      +|+++|++|||||||+++|.++.+..++.++ +...........+....+.+||+||+.+++..+..+++.+ +++|+|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999887766443 2222222222224457899999999999988888899999 9999999


Q ss_pred             ecCCC-CchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467         88 DISCQ-PTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE  157 (730)
Q Consensus        88 Dvtd~-eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~  157 (730)
                      |+++. .++..+..|+..+.....                            ...+++|+++++||+|+..
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~----------------------------~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLE----------------------------KVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHh----------------------------hccCCCCEEEEecchhhcc
Confidence            99997 778888888777644321                            0126789999999999864

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.64  E-value=4.1e-15  Score=168.40  Aligned_cols=174  Identities=16%  Similarity=0.130  Sum_probs=117.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhh----hhhh---Hhhhc
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERF----RSIT---QSYYR   78 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~----~sl~---~~~~r   78 (730)
                      ...+|+|||.||||||||+|++++.+.....+|..+..+....+.+++  ..+.||||||..+.    ..+.   -..+.
T Consensus       158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhie  235 (500)
T PRK12296        158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIE  235 (500)
T ss_pred             ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence            345799999999999999999998876665567666677777777777  67999999996321    1122   23467


Q ss_pred             cccEEEEEeecCCC----CchhhhHHHHHHHHHHhcc-cceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCC
Q psy17467         79 SAHALILVYDISCQ----PTFDCLTDWLREIEEYASF-KVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKT  153 (730)
Q Consensus        79 ~ADaIILVyDvtd~----eSfe~L~~wleeI~~~~~~-~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~  153 (730)
                      .||++|+|+|+++.    ..++++..|..++..+... ..+                   .++  ..-.+.|+++|+||+
T Consensus       236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~-------------------~~~--~~l~~kP~IVVlNKi  294 (500)
T PRK12296        236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGD-------------------LGL--GDLAERPRLVVLNKI  294 (500)
T ss_pred             hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhccccc-------------------chh--hhhcCCCEEEEEECc
Confidence            89999999999863    4566666666666554310 000                   000  001356778888888


Q ss_pred             CcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecC
Q psy17467        154 DLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAK  233 (730)
Q Consensus       154 DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAk  233 (730)
                      |+.+...                                                  + .+.........++++++|||+
T Consensus       295 DL~da~e--------------------------------------------------l-~e~l~~~l~~~g~~Vf~ISA~  323 (500)
T PRK12296        295 DVPDARE--------------------------------------------------L-AEFVRPELEARGWPVFEVSAA  323 (500)
T ss_pred             cchhhHH--------------------------------------------------H-HHHHHHHHHHcCCeEEEEECC
Confidence            8753211                                                  0 111222233457899999999


Q ss_pred             CCCChHHHHHHHHHHHHHHH
Q psy17467        234 ASDNVEKLFMQIAAELMEKL  253 (730)
Q Consensus       234 tG~GVeeLFe~Li~~l~e~~  253 (730)
                      ++.||++++.+|.+.+...+
T Consensus       324 tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        324 SREGLRELSFALAELVEEAR  343 (500)
T ss_pred             CCCCHHHHHHHHHHHHHhhh
Confidence            99999999999998875543

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.64  E-value=3.4e-15  Score=166.38  Aligned_cols=87  Identities=23%  Similarity=0.215  Sum_probs=68.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh--------hhhhhHhhhc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER--------FRSITQSYYR   78 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~--------~~sl~~~~~r   78 (730)
                      .+|+++|.+|||||||+|+|++.... ....|.++.+.....+.+++  ..+.+|||||...        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            58999999999999999999987642 33345666677777778877  7899999999876        2233455688


Q ss_pred             cccEEEEEeecCCCCchh
Q psy17467         79 SAHALILVYDISCQPTFD   96 (730)
Q Consensus        79 ~ADaIILVyDvtd~eSfe   96 (730)
                      .+|++|+|+|++++.+..
T Consensus        80 ~ad~il~vvd~~~~~~~~   97 (435)
T PRK00093         80 EADVILFVVDGRAGLTPA   97 (435)
T ss_pred             hCCEEEEEEECCCCCCHH
Confidence            999999999998865543

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.63  E-value=3.6e-15  Score=172.91  Aligned_cols=146  Identities=20%  Similarity=0.214  Sum_probs=109.9

Q ss_pred             cCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhh------hHhhh--ccccEEEE
Q psy17467         14 GNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSI------TQSYY--RSAHALIL   85 (730)
Q Consensus        14 G~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl------~~~~~--r~ADaIIL   85 (730)
                      |++|||||||+|++++..+...+.|+++.+.....+.+++  ..+++|||||+.++...      ...++  .++|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999999888777778888888777888877  45899999999876543      33443  37899999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      |+|.++.+.   ...+..++.                                  ..+.|+++|+||+|+.+.       
T Consensus        79 VvDat~ler---~l~l~~ql~----------------------------------~~~~PiIIVlNK~Dl~~~-------  114 (591)
T TIGR00437        79 VVDASNLER---NLYLTLQLL----------------------------------ELGIPMILALNLVDEAEK-------  114 (591)
T ss_pred             EecCCcchh---hHHHHHHHH----------------------------------hcCCCEEEEEehhHHHHh-------
Confidence            999987432   112222221                                  135688888888887421       


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L  245 (730)
                                                                 +.+. .+.+++++.+|++++++||++|+|++++|+.+
T Consensus       115 -------------------------------------------~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i  150 (591)
T TIGR00437       115 -------------------------------------------KGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAI  150 (591)
T ss_pred             -------------------------------------------CCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence                                                       1222 34678888999999999999999999999999


Q ss_pred             HHHH
Q psy17467        246 AAEL  249 (730)
Q Consensus       246 i~~l  249 (730)
                      .+..
T Consensus       151 ~~~~  154 (591)
T TIGR00437       151 RKAI  154 (591)
T ss_pred             HHHh
Confidence            8754

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.62  E-value=7.1e-15  Score=163.28  Aligned_cols=149  Identities=19%  Similarity=0.188  Sum_probs=106.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCc--------hhhhhhhHhhhcc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ--------ERFRSITQSYYRS   79 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~--------e~~~sl~~~~~r~   79 (730)
                      +|+++|++|||||||+|+|++.... ....|.++.+.....+.+++  ..+.+|||||.        ..+......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            5899999999999999999987642 23345566566677777777  56999999996        3344455667899


Q ss_pred             ccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhh
Q psy17467         80 AHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDE  159 (730)
Q Consensus        80 ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e  159 (730)
                      ||++++|+|.++..+..+. .+...+.+                                  .+.|+++|+||+|+.+.+
T Consensus        79 ad~vl~vvD~~~~~~~~d~-~i~~~l~~----------------------------------~~~piilVvNK~D~~~~~  123 (429)
T TIGR03594        79 ADVILFVVDGREGLTPEDE-EIAKWLRK----------------------------------SGKPVILVANKIDGKKED  123 (429)
T ss_pred             CCEEEEEEeCCCCCCHHHH-HHHHHHHH----------------------------------hCCCEEEEEECccCCccc
Confidence            9999999999886554432 12222221                                  246788888888875211


Q ss_pred             HHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCCh
Q psy17467        160 HVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNV  238 (730)
Q Consensus       160 ~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GV  238 (730)
                                                                         .   ...+ ...+|+ .++++||++|.|+
T Consensus       124 ---------------------------------------------------~---~~~~-~~~lg~~~~~~vSa~~g~gv  148 (429)
T TIGR03594       124 ---------------------------------------------------A---VAAE-FYSLGFGEPIPISAEHGRGI  148 (429)
T ss_pred             ---------------------------------------------------c---cHHH-HHhcCCCCeEEEeCCcCCCh
Confidence                                                               0   1111 235566 6999999999999


Q ss_pred             HHHHHHHHHHH
Q psy17467        239 EKLFMQIAAEL  249 (730)
Q Consensus       239 eeLFe~Li~~l  249 (730)
                      +++++.+.+.+
T Consensus       149 ~~ll~~i~~~l  159 (429)
T TIGR03594       149 GDLLDAILELL  159 (429)
T ss_pred             HHHHHHHHHhc
Confidence            99999988766

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>KOG4423|consensus

Probab=99.61  E-value=2.4e-17  Score=162.52  Aligned_cols=175  Identities=30%  Similarity=0.566  Sum_probs=146.0

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe-EEEEEEEeCCCchhhhhhhHhhhcccc
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE-RIKLQIWDTAGQERFRSITQSYYRSAH   81 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~-~v~LqLwDTpG~e~~~sl~~~~~r~AD   81 (730)
                      ..++++|+.|+|+-+||||+++.|+....|...|..|+|+++..+.+.++++ .++++|||++|++++..+..-||+.|+
T Consensus        21 kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~  100 (229)
T KOG4423|consen   21 KREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAH  100 (229)
T ss_pred             hhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCc
Confidence            3578999999999999999999999999999999999999999988888765 467999999999999999999999999


Q ss_pred             EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467         82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV  161 (730)
Q Consensus        82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~  161 (730)
                      +.++|||+++...|+....|.+++....                           ........|+|+..||+|...+.. 
T Consensus       101 ~~~iVfdvt~s~tfe~~skwkqdldsk~---------------------------qLpng~Pv~~vllankCd~e~~a~-  152 (229)
T KOG4423|consen  101 GAFIVFDVTRSLTFEPVSKWKQDLDSKL---------------------------QLPNGTPVPCVLLANKCDQEKSAK-  152 (229)
T ss_pred             ceEEEEEccccccccHHHHHHHhccCcc---------------------------cCCCCCcchheeccchhccChHhh-
Confidence            9999999999999999999999975432                           123446677777777777753210 


Q ss_pred             HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHH
Q psy17467        162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEK  240 (730)
Q Consensus       162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVee  240 (730)
                                                                      .--.....++++.+|+ .++|+|+|.+.|++|
T Consensus       153 ------------------------------------------------~~~~~~~d~f~kengf~gwtets~Kenkni~E  184 (229)
T KOG4423|consen  153 ------------------------------------------------NEATRQFDNFKKENGFEGWTETSAKENKNIPE  184 (229)
T ss_pred             ------------------------------------------------hhhHHHHHHHHhccCccceeeeccccccChhH
Confidence                                                            0112556778888887 699999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy17467        241 LFMQIAAELMEKL  253 (730)
Q Consensus       241 LFe~Li~~l~e~~  253 (730)
                      +.+.+++.++.+.
T Consensus       185 a~r~lVe~~lvnd  197 (229)
T KOG4423|consen  185 AQRELVEKILVND  197 (229)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999998875543

>KOG3883|consensus

Probab=99.61  E-value=9.3e-15  Score=140.47  Aligned_cols=163  Identities=27%  Similarity=0.417  Sum_probs=131.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCC--CCCCcceeeEEEEEEEe-CCeEEEEEEEeCCCchhh-hhhhHhhhccccE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPP--GQGATIGVDFMIKTVEI-NNERIKLQIWDTAGQERF-RSITQSYYRSAHA   82 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~--~~~pTig~d~~~~~i~v-dg~~v~LqLwDTpG~e~~-~sl~~~~~r~ADa   82 (730)
                      ..||+++|..+||||+|+.+++-+...+  .+.||++ |.+...++- .|..-.+.|+||+|...+ ..+-+.|+..+|+
T Consensus         9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa   87 (198)
T KOG3883|consen    9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA   87 (198)
T ss_pred             ceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence            4799999999999999999998765543  4678887 666666655 344567999999998776 5577889999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      ++||||..|++||+.+..+..+|.+...                              ...+||++.|||.|+.      
T Consensus        88 fVLVYs~~d~eSf~rv~llKk~Idk~Kd------------------------------KKEvpiVVLaN~rdr~------  131 (198)
T KOG3883|consen   88 FVLVYSPMDPESFQRVELLKKEIDKHKD------------------------------KKEVPIVVLANKRDRA------  131 (198)
T ss_pred             EEEEecCCCHHHHHHHHHHHHHHhhccc------------------------------cccccEEEEechhhcc------
Confidence            9999999999999988776666665442                              2345667777777764      


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF  242 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF  242 (730)
                                                                  ..+.+..+.++.||+.-.+..+|++|.....+-+.|
T Consensus       132 --------------------------------------------~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf  167 (198)
T KOG3883|consen  132 --------------------------------------------EPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF  167 (198)
T ss_pred             --------------------------------------------cchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence                                                        236788899999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy17467        243 MQIAAELM  250 (730)
Q Consensus       243 e~Li~~l~  250 (730)
                      ..+...+.
T Consensus       168 ~~l~~rl~  175 (198)
T KOG3883|consen  168 TYLASRLH  175 (198)
T ss_pred             HHHHHhcc
Confidence            99987763

>cd04163 Era Era subfamily

Probab=99.61  E-value=1.6e-14  Score=135.36  Aligned_cols=154  Identities=18%  Similarity=0.134  Sum_probs=98.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCC-CCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh--------hhHhhh
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQ-GATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS--------ITQSYY   77 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~-~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s--------l~~~~~   77 (730)
                      ..+|+++|.+|||||||++++++....... .+......  ...........+.+|||||......        .....+
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNR--IRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL   80 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceece--EEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence            478999999999999999999987653222 11121111  1112223346789999999653322        234457


Q ss_pred             ccccEEEEEeecCCCCchhhhHH-HHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467         78 RSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD  156 (730)
Q Consensus        78 r~ADaIILVyDvtd~eSfe~L~~-wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~  156 (730)
                      ..+|++++|+|++++.  ..... +...+..                                  .+.|+++|+||+|+.
T Consensus        81 ~~~d~i~~v~d~~~~~--~~~~~~~~~~~~~----------------------------------~~~~~iiv~nK~Dl~  124 (168)
T cd04163          81 KDVDLVLFVVDASEPI--GEGDEFILELLKK----------------------------------SKTPVILVLNKIDLV  124 (168)
T ss_pred             HhCCEEEEEEECCCcc--CchHHHHHHHHHH----------------------------------hCCCEEEEEEchhcc
Confidence            8999999999999872  22222 2222221                                  146788888999886


Q ss_pred             hhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc-CCeEEEEecCCC
Q psy17467        157 EDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH-DMYYLETSAKAS  235 (730)
Q Consensus       157 ~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l-g~~fvEtSAktG  235 (730)
                      ....                                                  ...+....+.... ..+++++|++++
T Consensus       125 ~~~~--------------------------------------------------~~~~~~~~~~~~~~~~~~~~~s~~~~  154 (168)
T cd04163         125 KDKE--------------------------------------------------DLLPLLEKLKELGPFAEIFPISALKG  154 (168)
T ss_pred             ccHH--------------------------------------------------HHHHHHHHHHhccCCCceEEEEeccC
Confidence            2111                                                  1112233344444 358999999999


Q ss_pred             CChHHHHHHHHHH
Q psy17467        236 DNVEKLFMQIAAE  248 (730)
Q Consensus       236 ~GVeeLFe~Li~~  248 (730)
                      .|++++|+.|.+.
T Consensus       155 ~~~~~l~~~l~~~  167 (168)
T cd04163         155 ENVDELLEEIVKY  167 (168)
T ss_pred             CChHHHHHHHHhh
Confidence            9999999998754

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.61  E-value=1.3e-14  Score=167.89  Aligned_cols=87  Identities=21%  Similarity=0.232  Sum_probs=71.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      +..+|+++|.+++|||||+++|.+..+...+.++++.+.....+.+++. ..+.||||||++.|..++...+..+|++|+
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL  164 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL  164 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence            3468999999999999999999998887766566655555556666542 268999999999999999889999999999


Q ss_pred             EeecCCCC
Q psy17467         86 VYDISCQP   93 (730)
Q Consensus        86 VyDvtd~e   93 (730)
                      |+|+++..
T Consensus       165 VVda~dgv  172 (587)
T TIGR00487       165 VVAADDGV  172 (587)
T ss_pred             EEECCCCC
Confidence            99998753

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>KOG0075|consensus

Probab=99.60  E-value=1.6e-15  Score=144.79  Aligned_cols=163  Identities=21%  Similarity=0.327  Sum_probs=124.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      ..+.+.++|..++|||||+|....+.+.....||+|.    .+..+....+.+.+||.+|+.+|+++|+.|++.++++++
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGf----nmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY   94 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGF----NMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY   94 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhhcccccc----eeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence            3478999999999999999999999999888899983    333444455899999999999999999999999999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      |.|+.|++.++..++.+..+.....                              -.++|+++.|||.|+..--      
T Consensus        95 ~VDaad~~k~~~sr~EL~~LL~k~~------------------------------l~gip~LVLGnK~d~~~AL------  138 (186)
T KOG0075|consen   95 VVDAADPDKLEASRSELHDLLDKPS------------------------------LTGIPLLVLGNKIDLPGAL------  138 (186)
T ss_pred             EeecCCcccchhhHHHHHHHhcchh------------------------------hcCCcEEEecccccCcccc------
Confidence            9999999999888877777654331                              1568888889999985310      


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L  245 (730)
                                                          .|.|+.     .+.+..-.....+..+.+||++..|++.+.+++
T Consensus       139 ------------------------------------~~~~li-----~rmgL~sitdREvcC~siScke~~Nid~~~~Wl  177 (186)
T KOG0075|consen  139 ------------------------------------SKIALI-----ERMGLSSITDREVCCFSISCKEKVNIDITLDWL  177 (186)
T ss_pred             ------------------------------------cHHHHH-----HHhCccccccceEEEEEEEEcCCccHHHHHHHH
Confidence                                                111110     000000011223568999999999999999999


Q ss_pred             HHHH
Q psy17467        246 AAEL  249 (730)
Q Consensus       246 i~~l  249 (730)
                      ++..
T Consensus       178 i~hs  181 (186)
T KOG0075|consen  178 IEHS  181 (186)
T ss_pred             HHHh
Confidence            8765

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.59  E-value=2.1e-14  Score=158.95  Aligned_cols=161  Identities=16%  Similarity=0.143  Sum_probs=116.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh----hh---Hhhhccc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS----IT---QSYYRSA   80 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s----l~---~~~~r~A   80 (730)
                      -.|+|||.||||||||+|++++.+.....+|.++..+....+.+++ ...+.++||||..+-.+    +.   -..++.+
T Consensus       160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra  238 (390)
T PRK12298        160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERC  238 (390)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence            4799999999999999999998876666667776666666776653 23589999999753211    12   2357889


Q ss_pred             cEEEEEeecC---CCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467         81 HALILVYDIS---CQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE  157 (730)
Q Consensus        81 DaIILVyDvt---d~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~  157 (730)
                      |++++|+|++   +...++++..|+.++..+..                             .-.+.|+++|+||+|+..
T Consensus       239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~-----------------------------~L~~kP~IlVlNKiDl~~  289 (390)
T PRK12298        239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSP-----------------------------KLAEKPRWLVFNKIDLLD  289 (390)
T ss_pred             CEEEEEeccCcccccChHHHHHHHHHHHHhhhh-----------------------------hhcCCCEEEEEeCCccCC
Confidence            9999999998   55677787888888765421                             013567888888888753


Q ss_pred             hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC--CeEEEEecCCC
Q psy17467        158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD--MYYLETSAKAS  235 (730)
Q Consensus       158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg--~~fvEtSAktG  235 (730)
                      ...                                                   ..+..+++.+..+  ..++.+||+++
T Consensus       290 ~~e---------------------------------------------------l~~~l~~l~~~~~~~~~Vi~ISA~tg  318 (390)
T PRK12298        290 EEE---------------------------------------------------AEERAKAIVEALGWEGPVYLISAASG  318 (390)
T ss_pred             hHH---------------------------------------------------HHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            211                                                   1123344444444  36899999999


Q ss_pred             CChHHHHHHHHHHH
Q psy17467        236 DNVEKLFMQIAAEL  249 (730)
Q Consensus       236 ~GVeeLFe~Li~~l  249 (730)
                      .||+++++.|.+.+
T Consensus       319 ~GIdeLl~~I~~~L  332 (390)
T PRK12298        319 LGVKELCWDLMTFI  332 (390)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999998876

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.59  E-value=1.5e-14  Score=167.63  Aligned_cols=155  Identities=19%  Similarity=0.225  Sum_probs=113.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC---CCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQG---VFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~---~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      +.|+++|.+++|||||+++|++.   .++..+.++++.+.....+.+++  ..+.+||+||+++|.......+.++|++|
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            46899999999999999999963   34445556677677666777776  78999999999999887778889999999


Q ss_pred             EEeecCCCC---chhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCc-eEEeccCCCcchhhH
Q psy17467         85 LVYDISCQP---TFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALA-TALASDKTDLDEDEH  160 (730)
Q Consensus        85 LVyDvtd~e---Sfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~P-VVLVGNK~DL~~~e~  160 (730)
                      +|+|+++..   +++.+.    .+..                                  .+.| +++|+||+|+.+.+.
T Consensus        79 LVVDa~~G~~~qT~ehl~----il~~----------------------------------lgi~~iIVVlNK~Dlv~~~~  120 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHLA----VLDL----------------------------------LGIPHTIVVITKADRVNEEE  120 (581)
T ss_pred             EEEECCCCCcHHHHHHHH----HHHH----------------------------------cCCCeEEEEEECCCCCCHHH
Confidence            999999843   332221    1110                                  2345 888899999864321


Q ss_pred             HHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc----CCeEEEEecCCCC
Q psy17467        161 VLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH----DMYYLETSAKASD  236 (730)
Q Consensus       161 ~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l----g~~fvEtSAktG~  236 (730)
                      .                                                ....++..++++..    ++++++|||++|.
T Consensus       121 ~------------------------------------------------~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~  152 (581)
T TIGR00475       121 I------------------------------------------------KRTEMFMKQILNSYIFLKNAKIFKTSAKTGQ  152 (581)
T ss_pred             H------------------------------------------------HHHHHHHHHHHHHhCCCCCCcEEEEeCCCCC
Confidence            0                                                01123445555443    5789999999999


Q ss_pred             ChHHHHHHHHHHHH
Q psy17467        237 NVEKLFMQIAAELM  250 (730)
Q Consensus       237 GVeeLFe~Li~~l~  250 (730)
                      ||+++++.+...+.
T Consensus       153 GI~eL~~~L~~l~~  166 (581)
T TIGR00475       153 GIGELKKELKNLLE  166 (581)
T ss_pred             CchhHHHHHHHHHH
Confidence            99999998876653

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.58  E-value=3.1e-14  Score=168.54  Aligned_cols=154  Identities=22%  Similarity=0.160  Sum_probs=104.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh--------hhhhhHhh
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER--------FRSITQSY   76 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~--------~~sl~~~~   76 (730)
                      ...+|+|+|.+|||||||+|+|++.... ....|+++.+.......+++  ..+.+|||||.+.        +......+
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~  351 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA  351 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence            3468999999999999999999987652 33446666555555555666  5689999999753        23334567


Q ss_pred             hccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467         77 YRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD  156 (730)
Q Consensus        77 ~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~  156 (730)
                      ++.||++|+|+|+++.....+ ..|...+..                                  .+.|+++|+||+|+.
T Consensus       352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~----------------------------------~~~pvIlV~NK~D~~  396 (712)
T PRK09518        352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR----------------------------------AGKPVVLAVNKIDDQ  396 (712)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh----------------------------------cCCCEEEEEECcccc
Confidence            889999999999986432221 134444321                                  457888888888874


Q ss_pred             hhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCC
Q psy17467        157 EDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASD  236 (730)
Q Consensus       157 ~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~  236 (730)
                      ...                                                     ......+...++ ..++|||++|.
T Consensus       397 ~~~-----------------------------------------------------~~~~~~~~lg~~-~~~~iSA~~g~  422 (712)
T PRK09518        397 ASE-----------------------------------------------------YDAAEFWKLGLG-EPYPISAMHGR  422 (712)
T ss_pred             cch-----------------------------------------------------hhHHHHHHcCCC-CeEEEECCCCC
Confidence            210                                                     011122222223 35799999999


Q ss_pred             ChHHHHHHHHHHHH
Q psy17467        237 NVEKLFMQIAAELM  250 (730)
Q Consensus       237 GVeeLFe~Li~~l~  250 (730)
                      ||+++|+.+++.+.
T Consensus       423 GI~eLl~~i~~~l~  436 (712)
T PRK09518        423 GVGDLLDEALDSLK  436 (712)
T ss_pred             CchHHHHHHHHhcc
Confidence            99999999998763

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.57  E-value=3.8e-14  Score=164.67  Aligned_cols=162  Identities=20%  Similarity=0.246  Sum_probs=112.9

Q ss_pred             CCCCcceeEEEEEcCCCCCHHHHHHHHHcC--CCC-----CCCC------CcceeeEEEEEE--Ee---CCeEEEEEEEe
Q psy17467          1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQG--VFP-----PGQG------ATIGVDFMIKTV--EI---NNERIKLQIWD   62 (730)
Q Consensus         1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~--~f~-----~~~~------pTig~d~~~~~i--~v---dg~~v~LqLwD   62 (730)
                      |.+.+..-+|+|+|..++|||||+.+|+..  .+.     ..+.      .+.|.+.....+  .+   ++..+.++|||
T Consensus         1 ~~~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiD   80 (600)
T PRK05433          1 MMDMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLID   80 (600)
T ss_pred             CCccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEE
Confidence            344455568999999999999999999862  111     1110      122333333333  33   55678999999


Q ss_pred             CCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCC
Q psy17467         63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDP  142 (730)
Q Consensus        63 TpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~  142 (730)
                      |||+.+|...+..+++.+|++|+|+|+++..+.+....|.....                                   .
T Consensus        81 TPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~-----------------------------------~  125 (600)
T PRK05433         81 TPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----------------------------------N  125 (600)
T ss_pred             CCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----------------------------------C
Confidence            99999999999999999999999999999877766655543221                                   3


Q ss_pred             CCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHh
Q psy17467        143 ALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR  222 (730)
Q Consensus       143 ~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~  222 (730)
                      +.|+++|+||+|+....                                                    ..+...++...
T Consensus       126 ~lpiIvViNKiDl~~a~----------------------------------------------------~~~v~~ei~~~  153 (600)
T PRK05433        126 DLEIIPVLNKIDLPAAD----------------------------------------------------PERVKQEIEDV  153 (600)
T ss_pred             CCCEEEEEECCCCCccc----------------------------------------------------HHHHHHHHHHH
Confidence            56778888888874210                                                    01112233333


Q ss_pred             cCC---eEEEEecCCCCChHHHHHHHHHHH
Q psy17467        223 HDM---YYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       223 lg~---~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                      +++   .++++||++|.||+++++.|++.+
T Consensus       154 lg~~~~~vi~iSAktG~GI~~Ll~~I~~~l  183 (600)
T PRK05433        154 IGIDASDAVLVSAKTGIGIEEVLEAIVERI  183 (600)
T ss_pred             hCCCcceEEEEecCCCCCHHHHHHHHHHhC
Confidence            444   389999999999999999998766

>cd00880 Era_like Era (E

Probab=99.57  E-value=3.1e-14  Score=131.08  Aligned_cols=154  Identities=14%  Similarity=0.112  Sum_probs=103.4

Q ss_pred             EEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh-------hhHhhhccccEE
Q psy17467         12 LVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS-------ITQSYYRSAHAL   83 (730)
Q Consensus        12 VLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s-------l~~~~~r~ADaI   83 (730)
                      ++|.+|+|||||++++++.... ....+..+..........+. ...+.+||++|......       ....+++.+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999987554 33333333334343443331 36799999999765432       334578899999


Q ss_pred             EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      ++|+|.++..+..... |.....                                  ..+.|+++|+||+|+........
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~----------------------------------~~~~~~ivv~nK~D~~~~~~~~~  124 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLR----------------------------------ERGKPVLLVLNKIDLLPEEEEEE  124 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHH----------------------------------hcCCeEEEEEEccccCChhhHHH
Confidence            9999999987776654 222221                                  14678889999999865321100


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM  243 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe  243 (730)
                                                                     .............+++++++||+++.|++++++
T Consensus       125 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~  157 (163)
T cd00880         125 -----------------------------------------------LLELRLLILLLLLGLPVIAVSALTGEGIDELRE  157 (163)
T ss_pred             -----------------------------------------------HHHHHHhhcccccCCceEEEeeeccCCHHHHHH
Confidence                                                           000112223334467899999999999999999


Q ss_pred             HHHHH
Q psy17467        244 QIAAE  248 (730)
Q Consensus       244 ~Li~~  248 (730)
                      .+.+.
T Consensus       158 ~l~~~  162 (163)
T cd00880         158 ALIEA  162 (163)
T ss_pred             HHHhh
Confidence            98764

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>KOG0071|consensus

Probab=99.57  E-value=3e-14  Score=135.32  Aligned_cols=156  Identities=21%  Similarity=0.382  Sum_probs=122.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .++|+++|..++||||++.++.-+... +..||+|  +...++++.+  +.+++||.+|++..+.+|+.||....++|||
T Consensus        17 E~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvG--FnvetVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglIFV   91 (180)
T KOG0071|consen   17 EMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   91 (180)
T ss_pred             cceEEEEecccCCceehhhHHhcCCCc-ccccccc--eeEEEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence            479999999999999999999977644 4458988  6677888887  8899999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      .|..++...+.++..+..|..+..                              -.+.|+++.+||.|+.+-        
T Consensus        92 ~Dsa~~dr~eeAr~ELh~ii~~~e------------------------------m~~~~~LvlANkQDlp~A--------  133 (180)
T KOG0071|consen   92 VDSADRDRIEEARNELHRIINDRE------------------------------MRDAIILILANKQDLPDA--------  133 (180)
T ss_pred             EeccchhhHHHHHHHHHHHhCCHh------------------------------hhcceEEEEecCcccccc--------
Confidence            999998888888776666654431                              135667777888888541        


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHH-----HHhcCCeEEEEecCCCCChHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDF-----AKRHDMYYLETSAKASDNVEKL  241 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~l-----ak~lg~~fvEtSAktG~GVeeL  241 (730)
                                                                  .+..+...+     ++.....+..|||.+|.|+.+-
T Consensus       134 --------------------------------------------~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eg  169 (180)
T KOG0071|consen  134 --------------------------------------------MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEG  169 (180)
T ss_pred             --------------------------------------------cCHHHHHHHhccccccCCccEeeccccccchhHHHH
Confidence                                                        222333322     2223345789999999999999


Q ss_pred             HHHHHHHH
Q psy17467        242 FMQIAAEL  249 (730)
Q Consensus       242 Fe~Li~~l  249 (730)
                      |.++.+.+
T Consensus       170 lswlsnn~  177 (180)
T KOG0071|consen  170 LSWLSNNL  177 (180)
T ss_pred             HHHHHhhc
Confidence            99998765

>PRK00089 era GTPase Era; Reviewed

Probab=99.56  E-value=5.3e-14  Score=148.95  Aligned_cols=156  Identities=20%  Similarity=0.184  Sum_probs=100.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh--------hhhHhhh
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPG-QGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR--------SITQSYY   77 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~-~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~--------sl~~~~~   77 (730)
                      .-.|+++|++|||||||+|++++...... ..|..+..........++  .++.+|||||.....        ......+
T Consensus         5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~--~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~   82 (292)
T PRK00089          5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD--AQIIFVDTPGIHKPKRALNRAMNKAAWSSL   82 (292)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC--ceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence            45799999999999999999998876432 223332222222222233  789999999964322        2223457


Q ss_pred             ccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467         78 RSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE  157 (730)
Q Consensus        78 r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~  157 (730)
                      .++|++++|+|+++.  +.....++.....                                 ..+.|+++|+||+|+..
T Consensus        83 ~~~D~il~vvd~~~~--~~~~~~~i~~~l~---------------------------------~~~~pvilVlNKiDl~~  127 (292)
T PRK00089         83 KDVDLVLFVVDADEK--IGPGDEFILEKLK---------------------------------KVKTPVILVLNKIDLVK  127 (292)
T ss_pred             hcCCEEEEEEeCCCC--CChhHHHHHHHHh---------------------------------hcCCCEEEEEECCcCCC
Confidence            899999999999883  2222222221111                                 13568888899999863


Q ss_pred             hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC-CeEEEEecCCCC
Q psy17467        158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYLETSAKASD  236 (730)
Q Consensus       158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg-~~fvEtSAktG~  236 (730)
                      +..                                                  ...+..+.+.+..+ ..++++||++|.
T Consensus       128 ~~~--------------------------------------------------~l~~~~~~l~~~~~~~~i~~iSA~~~~  157 (292)
T PRK00089        128 DKE--------------------------------------------------ELLPLLEELSELMDFAEIVPISALKGD  157 (292)
T ss_pred             CHH--------------------------------------------------HHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence            211                                                  01123344444444 579999999999


Q ss_pred             ChHHHHHHHHHHH
Q psy17467        237 NVEKLFMQIAAEL  249 (730)
Q Consensus       237 GVeeLFe~Li~~l  249 (730)
                      |++++++.+.+.+
T Consensus       158 gv~~L~~~L~~~l  170 (292)
T PRK00089        158 NVDELLDVIAKYL  170 (292)
T ss_pred             CHHHHHHHHHHhC
Confidence            9999999998765

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.56  E-value=1.1e-13  Score=139.61  Aligned_cols=157  Identities=18%  Similarity=0.163  Sum_probs=97.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCC---CCCCcceeeEEEEEEEeC---------------------------C----
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPP---GQGATIGVDFMIKTVEIN---------------------------N----   53 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~---~~~pTig~d~~~~~i~vd---------------------------g----   53 (730)
                      ++|+++|..|+|||||+..+.+.....   ......+.........+.                           +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            479999999999999999997542111   000000000100010110                           1    


Q ss_pred             eEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCC----chhhhHHHHHHHHHHhcccceEEEEeccCchhhHHH
Q psy17467         54 ERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQP----TFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNE  129 (730)
Q Consensus        54 ~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~e----Sfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~  129 (730)
                      ....+.||||||++++.......+..+|++|+|+|++++.    +++.+..|    ...                     
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~~~---------------------  135 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----EIM---------------------  135 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----HHc---------------------
Confidence            1167899999999988777777788899999999998742    22222211    110                     


Q ss_pred             HHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCC
Q psy17467        130 MASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDR  209 (730)
Q Consensus       130 i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R  209 (730)
                                  ...|+++|+||+|+.......                                               
T Consensus       136 ------------~~~~iiivvNK~Dl~~~~~~~-----------------------------------------------  156 (203)
T cd01888         136 ------------GLKHIIIVQNKIDLVKEEQAL-----------------------------------------------  156 (203)
T ss_pred             ------------CCCcEEEEEEchhccCHHHHH-----------------------------------------------
Confidence                        113678889999986422100                                               


Q ss_pred             CCChHHHHHHHHh---cCCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467        210 EIPTEVGEDFAKR---HDMYYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       210 ~Vs~ee~~~lak~---lg~~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                       ...++.++++..   .+++++++||++|.||+++|+.+.+.+
T Consensus       157 -~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         157 -ENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             -HHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence             011233344433   256899999999999999999998654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.56  E-value=3.7e-14  Score=168.24  Aligned_cols=86  Identities=22%  Similarity=0.250  Sum_probs=70.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      +.-.|+|+|..++|||||+++|.++.+.....+.++.+.....+.+++  ..+.||||||++.|..++...+..+|++||
T Consensus       289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaIL  366 (787)
T PRK05306        289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVVL  366 (787)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence            446799999999999999999998877665555555444445566666  678999999999999999889999999999


Q ss_pred             EeecCCCC
Q psy17467         86 VYDISCQP   93 (730)
Q Consensus        86 VyDvtd~e   93 (730)
                      |||+++..
T Consensus       367 VVdAddGv  374 (787)
T PRK05306        367 VVAADDGV  374 (787)
T ss_pred             EEECCCCC
Confidence            99998853

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.55  E-value=6.1e-14  Score=131.92  Aligned_cols=152  Identities=19%  Similarity=0.261  Sum_probs=100.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCch----------hhhhhhHhhhc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE----------RFRSITQSYYR   78 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e----------~~~sl~~~~~r   78 (730)
                      +|+++|++|||||||++.++++.+.....++.+.+.....+..++   .+.+|||||..          .+......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            389999999999999999997666665556666555444554444   78999999842          23444445554


Q ss_pred             ---cccEEEEEeecCCCCchh--hhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCC
Q psy17467         79 ---SAHALILVYDISCQPTFD--CLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKT  153 (730)
Q Consensus        79 ---~ADaIILVyDvtd~eSfe--~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~  153 (730)
                         +.+++++|+|.++..+..  .+..|+..                                     .+.|+++++||+
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~-------------------------------------~~~~vi~v~nK~  120 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE-------------------------------------LGIPFLVVLTKA  120 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH-------------------------------------cCCCEEEEEEch
Confidence               457899999988754322  22223222                                     236788888999


Q ss_pred             CcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH--hcCCeEEEEe
Q psy17467        154 DLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK--RHDMYYLETS  231 (730)
Q Consensus       154 DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak--~lg~~fvEtS  231 (730)
                      |+...+...                                                ..........+  ....+++++|
T Consensus       121 D~~~~~~~~------------------------------------------------~~~~~~~~~l~~~~~~~~~~~~S  152 (170)
T cd01876         121 DKLKKSELA------------------------------------------------KALKEIKKELKLFEIDPPIILFS  152 (170)
T ss_pred             hcCChHHHH------------------------------------------------HHHHHHHHHHHhccCCCceEEEe
Confidence            985432110                                                01112222222  3346799999


Q ss_pred             cCCCCChHHHHHHHHHH
Q psy17467        232 AKASDNVEKLFMQIAAE  248 (730)
Q Consensus       232 AktG~GVeeLFe~Li~~  248 (730)
                      |+++.|++++++.+.+.
T Consensus       153 a~~~~~~~~l~~~l~~~  169 (170)
T cd01876         153 SLKGQGIDELRALIEKW  169 (170)
T ss_pred             cCCCCCHHHHHHHHHHh
Confidence            99999999999998764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.55  E-value=9.1e-14  Score=165.29  Aligned_cols=153  Identities=20%  Similarity=0.194  Sum_probs=111.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhh----------hHhh
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSI----------TQSY   76 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl----------~~~~   76 (730)
                      .++|+++|.||||||||+|++++........|.++.+.....+..++  ..+++|||||..++...          ...+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~--~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCc--eEEEEEECCCccccccccccccHHHHHHHHH
Confidence            37899999999999999999998877666666666655555555544  77999999998765421          2233


Q ss_pred             h--ccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCC
Q psy17467         77 Y--RSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTD  154 (730)
Q Consensus        77 ~--r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~D  154 (730)
                      +  ..+|++|+|+|.++.+.-   ..|..++.+                                  .+.|++++.||+|
T Consensus        81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e----------------------------------~giPvIvVlNK~D  123 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERN---LYLTLQLLE----------------------------------LGIPCIVALNMLD  123 (772)
T ss_pred             HhccCCCEEEEEecCCcchhh---HHHHHHHHH----------------------------------cCCCEEEEEEchh
Confidence            3  479999999999885432   223333322                                  2467788888888


Q ss_pred             cchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCC
Q psy17467        155 LDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKA  234 (730)
Q Consensus       155 L~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAkt  234 (730)
                      +.+                                                  ++.+ ..+.+++++.+|++++++||++
T Consensus       124 l~~--------------------------------------------------~~~i-~id~~~L~~~LG~pVvpiSA~~  152 (772)
T PRK09554        124 IAE--------------------------------------------------KQNI-RIDIDALSARLGCPVIPLVSTR  152 (772)
T ss_pred             hhh--------------------------------------------------ccCc-HHHHHHHHHHhCCCEEEEEeec
Confidence            742                                                  1122 3456778889999999999999


Q ss_pred             CCChHHHHHHHHHHH
Q psy17467        235 SDNVEKLFMQIAAEL  249 (730)
Q Consensus       235 G~GVeeLFe~Li~~l  249 (730)
                      |+|++++.+.+.+..
T Consensus       153 g~GIdeL~~~I~~~~  167 (772)
T PRK09554        153 GRGIEALKLAIDRHQ  167 (772)
T ss_pred             CCCHHHHHHHHHHhh
Confidence            999999998887643

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.54  E-value=8.5e-14  Score=164.05  Aligned_cols=89  Identities=20%  Similarity=0.216  Sum_probs=69.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceee--EEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVD--FMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d--~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI   83 (730)
                      ....|+|+|..++|||||+++|.+..+.....++++.+  .+...+..++....+.||||||++.|..++..++..+|++
T Consensus       243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia  322 (742)
T CHL00189        243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA  322 (742)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence            34589999999999999999999887765443333322  2333344445568899999999999999999999999999


Q ss_pred             EEEeecCCCCc
Q psy17467         84 ILVYDISCQPT   94 (730)
Q Consensus        84 ILVyDvtd~eS   94 (730)
                      |||+|+++...
T Consensus       323 ILVVDA~dGv~  333 (742)
T CHL00189        323 ILIIAADDGVK  333 (742)
T ss_pred             EEEEECcCCCC
Confidence            99999988543

>KOG0076|consensus

Probab=99.50  E-value=4.2e-14  Score=138.57  Aligned_cols=164  Identities=25%  Similarity=0.379  Sum_probs=120.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcC-------CCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhh
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQG-------VFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYY   77 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~-------~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~   77 (730)
                      +-.+.|+|+|..++|||||+.+....       -.+....||+|..  ..++.+.+  ..+.+||.+|++..+++|..||
T Consensus        15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLn--ig~i~v~~--~~l~fwdlgGQe~lrSlw~~yY   90 (197)
T KOG0076|consen   15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLN--IGTIEVCN--APLSFWDLGGQESLRSLWKKYY   90 (197)
T ss_pred             hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeeccccee--ecceeecc--ceeEEEEcCChHHHHHHHHHHH
Confidence            34478999999999999999887532       1123345777744  44555554  6799999999999999999999


Q ss_pred             ccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467         78 RSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE  157 (730)
Q Consensus        78 r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~  157 (730)
                      ..|+++|+|+|++|++-|+....-++.+..+..                              -.++|+++.+||.|+.+
T Consensus        91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~------------------------------leg~p~L~lankqd~q~  140 (197)
T KOG0076|consen   91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEK------------------------------LEGAPVLVLANKQDLQN  140 (197)
T ss_pred             HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHH------------------------------hcCCchhhhcchhhhhh
Confidence            999999999999999999988776666655431                              15678888888888864


Q ss_pred             hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH---hcCCeEEEEecCC
Q psy17467        158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK---RHDMYYLETSAKA  234 (730)
Q Consensus       158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak---~lg~~fvEtSAkt  234 (730)
                      .....                                               .+  ...-.++.   ...++|..|||.+
T Consensus       141 ~~~~~-----------------------------------------------El--~~~~~~~e~~~~rd~~~~pvSal~  171 (197)
T KOG0076|consen  141 AMEAA-----------------------------------------------EL--DGVFGLAELIPRRDNPFQPVSALT  171 (197)
T ss_pred             hhhHH-----------------------------------------------HH--HHHhhhhhhcCCccCccccchhhh
Confidence            22110                                               00  00111122   2346799999999


Q ss_pred             CCChHHHHHHHHHHHHH
Q psy17467        235 SDNVEKLFMQIAAELME  251 (730)
Q Consensus       235 G~GVeeLFe~Li~~l~e  251 (730)
                      |+||++..+|+++.+.+
T Consensus       172 gegv~egi~w~v~~~~k  188 (197)
T KOG0076|consen  172 GEGVKEGIEWLVKKLEK  188 (197)
T ss_pred             cccHHHHHHHHHHHHhh
Confidence            99999999999988743

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.49  E-value=2.5e-13  Score=157.36  Aligned_cols=84  Identities=25%  Similarity=0.273  Sum_probs=61.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCC----CCcceeeEEEEEEE------------eCCeEEEEEEEeCCCchhhhhh
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQ----GATIGVDFMIKTVE------------INNERIKLQIWDTAGQERFRSI   72 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~----~pTig~d~~~~~i~------------vdg~~v~LqLwDTpG~e~~~sl   72 (730)
                      -|+++|.+|+|||||+++|++..+....    ..++|..+......            ++.....+.||||||++.|..+
T Consensus         6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l   85 (590)
T TIGR00491         6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL   85 (590)
T ss_pred             EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH
Confidence            3899999999999999999988765432    23333322211110            0001123889999999999999


Q ss_pred             hHhhhccccEEEEEeecCCC
Q psy17467         73 TQSYYRSAHALILVYDISCQ   92 (730)
Q Consensus        73 ~~~~~r~ADaIILVyDvtd~   92 (730)
                      +..+++.+|++|+|||+++.
T Consensus        86 ~~~~~~~aD~~IlVvD~~~g  105 (590)
T TIGR00491        86 RKRGGALADLAILIVDINEG  105 (590)
T ss_pred             HHHHHhhCCEEEEEEECCcC
Confidence            99999999999999999974

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.48  E-value=2.7e-13  Score=149.93  Aligned_cols=148  Identities=20%  Similarity=0.158  Sum_probs=108.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh--h-------hhHhhh
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR--S-------ITQSYY   77 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~--s-------l~~~~~   77 (730)
                      -.|+|||.||||||||+|||++.+.. +...|.++.|.......+.+  ..+.++||+|.+...  .       .....+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            46999999999999999999987654 45668888888888888888  459999999976322  1       123457


Q ss_pred             ccccEEEEEeecCCCCchh--hhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCc
Q psy17467         78 RSAHALILVYDISCQPTFD--CLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDL  155 (730)
Q Consensus        78 r~ADaIILVyDvtd~eSfe--~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL  155 (730)
                      ..||++|||+|....-+-+  .+.+|+..                                     .+.|+++|.||+|.
T Consensus        82 ~eADvilfvVD~~~Git~~D~~ia~~Lr~-------------------------------------~~kpviLvvNK~D~  124 (444)
T COG1160          82 EEADVILFVVDGREGITPADEEIAKILRR-------------------------------------SKKPVILVVNKIDN  124 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHHHHHHHHHHh-------------------------------------cCCCEEEEEEcccC
Confidence            8999999999998744433  33333321                                     35678888888887


Q ss_pred             chhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCC
Q psy17467        156 DEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKA  234 (730)
Q Consensus       156 ~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAkt  234 (730)
                      ...+                                                      +.+.+ .-.+|. ..+.+||..
T Consensus       125 ~~~e------------------------------------------------------~~~~e-fyslG~g~~~~ISA~H  149 (444)
T COG1160         125 LKAE------------------------------------------------------ELAYE-FYSLGFGEPVPISAEH  149 (444)
T ss_pred             chhh------------------------------------------------------hhHHH-HHhcCCCCceEeehhh
Confidence            4211                                                      12222 235565 689999999


Q ss_pred             CCChHHHHHHHHHHH
Q psy17467        235 SDNVEKLFMQIAAEL  249 (730)
Q Consensus       235 G~GVeeLFe~Li~~l  249 (730)
                      |.|+.+|.+.++..+
T Consensus       150 g~Gi~dLld~v~~~l  164 (444)
T COG1160         150 GRGIGDLLDAVLELL  164 (444)
T ss_pred             ccCHHHHHHHHHhhc
Confidence            999999999999876

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.48  E-value=4.6e-13  Score=148.69  Aligned_cols=83  Identities=25%  Similarity=0.299  Sum_probs=61.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEe---------------------C-CeEEEEEEEeCCC
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEI---------------------N-NERIKLQIWDTAG   65 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~v---------------------d-g~~v~LqLwDTpG   65 (730)
                      ++|++||.||||||||+|++++..+....+|..+.++......+                     + ...+.+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            68999999999999999999998876655555554454444332                     1 1236799999999


Q ss_pred             ch----hhhhhhHhh---hccccEEEEEeecC
Q psy17467         66 QE----RFRSITQSY---YRSAHALILVYDIS   90 (730)
Q Consensus        66 ~e----~~~sl~~~~---~r~ADaIILVyDvt   90 (730)
                      ..    ....+...+   +++||++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            53    334455555   88999999999997

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.48  E-value=2.9e-13  Score=151.12  Aligned_cols=86  Identities=19%  Similarity=0.234  Sum_probs=60.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCC-------------------------------CCCCcceeeEEEEEEEeCC
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPP-------------------------------GQGATIGVDFMIKTVEINN   53 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~-------------------------------~~~pTig~d~~~~~i~vdg   53 (730)
                      +..++|+++|.+++|||||+++|+...-..                               ...+.++.+.  ....++.
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~--~~~~~~~   81 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDL--AHKKFET   81 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCcccee--eeEEEec
Confidence            345999999999999999999998421110                               0022333333  3333444


Q ss_pred             eEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCC
Q psy17467         54 ERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQ   92 (730)
Q Consensus        54 ~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~   92 (730)
                      ..+.+.||||||+++|.......+..+|++|+|+|++++
T Consensus        82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~  120 (425)
T PRK12317         82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDA  120 (425)
T ss_pred             CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccC
Confidence            458899999999988765444557899999999999874

>KOG1707|consensus

Probab=99.47  E-value=3.3e-14  Score=159.78  Aligned_cols=190  Identities=24%  Similarity=0.336  Sum_probs=129.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||+++|+.|||||||+-.++..+|++...+-..  ....-..+....+...+.|++...+-+.....-++.||+|.+|
T Consensus         9 dVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~--~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lv   86 (625)
T KOG1707|consen    9 DVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP--RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICLV   86 (625)
T ss_pred             ceEEEEECCCCccHHHHHHHHHhhhccccccccCC--ccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEEE
Confidence            48999999999999999999999999877644443  1111122223346689999986555444446778999999999


Q ss_pred             eecCCCCchhhhHH-HHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         87 YDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        87 yDvtd~eSfe~L~~-wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      |+++++++++.++. |+..+++..+                             ...++||||||||+|+.+...     
T Consensus        87 yavd~~~T~D~ist~WLPlir~~~~-----------------------------~~~~~PVILvGNK~d~~~~~~-----  132 (625)
T KOG1707|consen   87 YAVDDESTVDRISTKWLPLIRQLFG-----------------------------DYHETPVILVGNKSDNGDNEN-----  132 (625)
T ss_pred             EecCChHHhhhhhhhhhhhhhcccC-----------------------------CCccCCEEEEeeccCCccccc-----
Confidence            99999999999965 9999987532                             346899999999999986431     


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L  245 (730)
                                                          + .|.   ....--..+++..-  ..++|||++..|+.++|...
T Consensus       133 ------------------------------------~-s~e---~~~~pim~~f~EiE--tciecSA~~~~n~~e~fYya  170 (625)
T KOG1707|consen  133 ------------------------------------N-SDE---VNTLPIMIAFAEIE--TCIECSALTLANVSELFYYA  170 (625)
T ss_pred             ------------------------------------c-chh---HHHHHHHHHhHHHH--HHHhhhhhhhhhhHhhhhhh
Confidence                                                0 000   00111122222222  25999999999999999999


Q ss_pred             HHHHHHHHHH----Hhhhccccccccchhhhcc
Q psy17467        246 AAELMEKLAE----KLTIMHDRGVGMLTRIYNI  274 (730)
Q Consensus       246 i~~l~e~~~~----~~~~~~~~~~~~l~riy~~  274 (730)
                      .++++.....    .......+....+.||+..
T Consensus       171 qKaVihPt~PLyda~~qelkp~~v~al~RIFki  203 (625)
T KOG1707|consen  171 QKAVIHPTSPLYDAEEQELKPRCVKALKRIFKI  203 (625)
T ss_pred             hheeeccCccccccccccccHHHHHHHHHHHhh
Confidence            9888654322    2222333344455555543

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.46  E-value=8.7e-13  Score=147.46  Aligned_cols=93  Identities=19%  Similarity=0.218  Sum_probs=68.0

Q ss_pred             CCCCcceeEEEEEcCCCCCHHHHHHHHHc--CCCCC-----------------------------CCCCcceeeEEEEEE
Q psy17467          1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQ--GVFPP-----------------------------GQGATIGVDFMIKTV   49 (730)
Q Consensus         1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~--~~f~~-----------------------------~~~pTig~d~~~~~i   49 (730)
                      |...+..++|+++|..++|||||+.+|+.  +....                             .....++.+.....+
T Consensus         1 ~~~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~   80 (426)
T TIGR00483         1 MAKEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKF   80 (426)
T ss_pred             CCCCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEE
Confidence            55567789999999999999999999985  22110                             011234444444444


Q ss_pred             EeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCch
Q psy17467         50 EINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTF   95 (730)
Q Consensus        50 ~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSf   95 (730)
                      ..+  .+.+.||||||+++|.......+..+|++|+|+|+++.+++
T Consensus        81 ~~~--~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~  124 (426)
T TIGR00483        81 ETD--KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE  124 (426)
T ss_pred             ccC--CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc
Confidence            444  47899999999988876555667899999999999998654

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.45  E-value=1.1e-12  Score=145.50  Aligned_cols=151  Identities=20%  Similarity=0.200  Sum_probs=110.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhh--------Hhhh
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSIT--------QSYY   77 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~--------~~~~   77 (730)
                      -+|++++|.||||||||+|.|++.+. .++..|.++.|.....+.++|  +.+.++||+|.++-....        ...+
T Consensus       217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~i  294 (454)
T COG0486         217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKAI  294 (454)
T ss_pred             CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence            37999999999999999999998765 566778888888888999999  889999999986544333        3458


Q ss_pred             ccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467         78 RSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE  157 (730)
Q Consensus        78 r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~  157 (730)
                      ..||.+++|+|.+.+.+-++.. .++                                   ....+.|+++|.||.||..
T Consensus       295 ~~ADlvL~v~D~~~~~~~~d~~-~~~-----------------------------------~~~~~~~~i~v~NK~DL~~  338 (454)
T COG0486         295 EEADLVLFVLDASQPLDKEDLA-LIE-----------------------------------LLPKKKPIIVVLNKADLVS  338 (454)
T ss_pred             HhCCEEEEEEeCCCCCchhhHH-HHH-----------------------------------hcccCCCEEEEEechhccc
Confidence            8999999999999863332221 111                                   1125677888888888853


Q ss_pred             hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCC
Q psy17467        158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDN  237 (730)
Q Consensus       158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~G  237 (730)
                      ..                                             +          ...+.-..+.+++.+||++|+|
T Consensus       339 ~~---------------------------------------------~----------~~~~~~~~~~~~i~iSa~t~~G  363 (454)
T COG0486         339 KI---------------------------------------------E----------LESEKLANGDAIISISAKTGEG  363 (454)
T ss_pred             cc---------------------------------------------c----------cchhhccCCCceEEEEecCccC
Confidence            11                                             0          0001112233689999999999


Q ss_pred             hHHHHHHHHHHHH
Q psy17467        238 VEKLFMQIAAELM  250 (730)
Q Consensus       238 VeeLFe~Li~~l~  250 (730)
                      ++.+-+.|.+.+.
T Consensus       364 l~~L~~~i~~~~~  376 (454)
T COG0486         364 LDALREAIKQLFG  376 (454)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999998887763

>KOG0074|consensus

Probab=99.44  E-value=4.8e-13  Score=127.36  Aligned_cols=119  Identities=26%  Similarity=0.415  Sum_probs=96.0

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI   83 (730)
                      ..+.+||.++|..|+|||||+.++..... ....||-|  +..+.+.+++ .+.+++||.+|+...+.+|..||.+.|++
T Consensus        14 t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~l   89 (185)
T KOG0074|consen   14 TRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGL   89 (185)
T ss_pred             CcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceE
Confidence            35679999999999999999999986653 33447777  6778888876 47899999999999999999999999999


Q ss_pred             EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467         84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD  156 (730)
Q Consensus        84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~  156 (730)
                      |+|+|.+|..-|+.+.+.+-++..-.                         .+     ...|+.+..||.|+.
T Consensus        90 IyVIDS~D~krfeE~~~el~ELleee-------------------------Kl-----~~vpvlIfankQdll  132 (185)
T KOG0074|consen   90 IYVIDSTDEKRFEEISEELVELLEEE-------------------------KL-----AEVPVLIFANKQDLL  132 (185)
T ss_pred             EEEEeCCchHhHHHHHHHHHHHhhhh-------------------------hh-----hccceeehhhhhHHH
Confidence            99999999999998876555543321                         11     456778888888875

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.43  E-value=1.8e-12  Score=134.53  Aligned_cols=96  Identities=16%  Similarity=0.138  Sum_probs=65.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCC--------C-----CCC---CcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhh
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFP--------P-----GQG---ATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSI   72 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~--------~-----~~~---pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl   72 (730)
                      +|+++|..|+|||||+++++...-.        .     .+.   ...+.+.......+......+.+|||||+.+|...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            4899999999999999999853110        0     000   11122222333333334488999999999999888


Q ss_pred             hHhhhccccEEEEEeecCCCCchhhhHHHHHHH
Q psy17467         73 TQSYYRSAHALILVYDISCQPTFDCLTDWLREI  105 (730)
Q Consensus        73 ~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI  105 (730)
                      +..+++.+|++|+|+|+++..+.+ ...|+..+
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~~-~~~~~~~~  112 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQAQ-TRILWRLL  112 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHH
Confidence            889999999999999999865432 23344443

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.43  E-value=8.5e-13  Score=130.96  Aligned_cols=161  Identities=24%  Similarity=0.268  Sum_probs=105.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCC------------------CCcceeeEEEEEEEeCCeEEEEEEEeCCCch
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQ------------------GATIGVDFMIKTVEINNERIKLQIWDTAGQE   67 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~------------------~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e   67 (730)
                      ..++|+++|..++|||||+.+|+........                  ....+.+.....+..+.....+.++||||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            3579999999999999999999853321110                  0112222223333312334789999999999


Q ss_pred             hhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceE
Q psy17467         68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATA  147 (730)
Q Consensus        68 ~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVV  147 (730)
                      +|.......+..+|++|+|+|+.+...-+. .+.+..+..                                  .+.|++
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~----------------------------------~~~p~i  126 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE----------------------------------LGIPII  126 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH----------------------------------TT-SEE
T ss_pred             ceeecccceecccccceeeeeccccccccc-ccccccccc----------------------------------cccceE
Confidence            988877788999999999999987644332 222222221                                  456788


Q ss_pred             EeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc----
Q psy17467        148 LASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH----  223 (730)
Q Consensus       148 LVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l----  223 (730)
                      ++.||+|+.+.+- .                                               .+..+....+.+..    
T Consensus       127 vvlNK~D~~~~~~-~-----------------------------------------------~~~~~~~~~l~~~~~~~~  158 (188)
T PF00009_consen  127 VVLNKMDLIEKEL-E-----------------------------------------------EIIEEIKEKLLKEYGENG  158 (188)
T ss_dssp             EEEETCTSSHHHH-H-----------------------------------------------HHHHHHHHHHHHHTTSTT
T ss_pred             EeeeeccchhhhH-H-----------------------------------------------HHHHHHHHHhccccccCc
Confidence            8999999973211 0                                               00111112333333    


Q ss_pred             --CCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467        224 --DMYYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       224 --g~~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                        .++++++||++|.|++++++.+.+.+
T Consensus       159 ~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  159 EEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             TSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             cccceEEEEecCCCCCHHHHHHHHHHhC
Confidence              35799999999999999999998765

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.43  E-value=6.3e-13  Score=134.50  Aligned_cols=83  Identities=20%  Similarity=0.209  Sum_probs=58.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCC-------------------------------CCCcceeeEEEEEEEeCCeEEE
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPG-------------------------------QGATIGVDFMIKTVEINNERIK   57 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~-------------------------------~~pTig~d~~~~~i~vdg~~v~   57 (730)
                      ||+|+|.+|+|||||+++|+...-...                               ....++.+.....+.+++  ..
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence            589999999999999999975321111                               002223333333344444  57


Q ss_pred             EEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCC
Q psy17467         58 LQIWDTAGQERFRSITQSYYRSAHALILVYDISCQP   93 (730)
Q Consensus        58 LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~e   93 (730)
                      +.||||||+.++.......++.+|++|+|+|+++..
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~  114 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGV  114 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCc
Confidence            889999999887665666788999999999998753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PF09735 Nckap1: Membrane-associated apoptosis protein; InterPro: IPR019137 Nck-associated protein 1 is part of lamellipodial complex that controls Rac-dependent actin remodeling

Probab=99.42  E-value=1.9e-14  Score=175.00  Aligned_cols=88  Identities=70%  Similarity=1.114  Sum_probs=72.5

Q ss_pred             HHHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHHhhcCCCCcee--eeccccccchhhHHHhHhhhh
Q psy17467        254 AEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNIDIK--SVSGISQIRSDIVKSLSLYYY  331 (730)
Q Consensus       254 ~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~~k~~p~~~~~--~~~~~~~~~~~~~~~l~~~~~  331 (730)
                      .++.....+++.|.++|+|+.++.|++.+++|.++.++.....++.+.|+||..+.+  ....++....+|++.|++||+
T Consensus         7 aEkl~iln~r~~g~l~rlynikk~~~~~k~kp~fl~dK~~e~~~K~i~kkfp~id~~~~~~~~~~~~~~e~~~~L~~~Y~   86 (1116)
T PF09735_consen    7 AEKLTILNDRGEGMLTRLYNIKKACGDPKSKPSFLSDKFIESAIKYIVKKFPNIDIRSNGLEPLQNRKKEILKSLSPYYY   86 (1116)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTS-GGGT-TTTHHHHHHHHHHTT-------TTHHHHHTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccchhhhccChHhhhcCCCCCCccccccChHHHHHHHHHhCCCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence            344455667788999999999999999999999999999999999999999999999  666788889999999999999


Q ss_pred             hhhccCCcee
Q psy17467        332 TFVDLLHFKD  341 (730)
Q Consensus       332 ~~~~~~~~~~  341 (730)
                      +|+|+++|.+
T Consensus        87 tf~D~~df~d   96 (1116)
T PF09735_consen   87 TFVDLMDFRD   96 (1116)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998854

It associates preferentially with the first SH3 domain of Nck and is a component of the WAVE2 complex composed of ABI1, CYFIP1/SRA1, NCKAP1/NAP1 and WASF2/WAVE2. It is also a component of the WAVE1 complex composed of ABI2, CYFIP2, C3orf10/HSPC300, NCKAP1 and WASF1/WAVE1. CYFIP2 binds to activated RAC1 which causes the complex to dissociate, releasing activated WASF1. The complex can also be activated by NCK1. Expression of this protein was found to be markedly reduced in patients with Alzheimer's disease [].; PDB: 3P8C_B.

>cd04167 Snu114p Snu114p subfamily

Probab=99.42  E-value=3.2e-12  Score=129.60  Aligned_cols=113  Identities=19%  Similarity=0.247  Sum_probs=79.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCC-----------------CCcceeeEEEEEEE--e---CCeEEEEEEEeCCCc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQ-----------------GATIGVDFMIKTVE--I---NNERIKLQIWDTAGQ   66 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~-----------------~pTig~d~~~~~i~--v---dg~~v~LqLwDTpG~   66 (730)
                      +|+|+|..++|||||+.+|+........                 ....|.+.....+.  +   ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            5899999999999999999875433210                 01112222222222  2   355789999999999


Q ss_pred             hhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCce
Q psy17467         67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALAT  146 (730)
Q Consensus        67 e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PV  146 (730)
                      .++......++..+|++|+|+|+++..+++. ..|+..+..                                  .+.|+
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----------------------------------~~~p~  126 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----------------------------------EGLPI  126 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----------------------------------cCCCE
Confidence            9998888888999999999999988766543 233333211                                  34788


Q ss_pred             EEeccCCCcc
Q psy17467        147 ALASDKTDLD  156 (730)
Q Consensus       147 VLVGNK~DL~  156 (730)
                      ++|+||.|+.
T Consensus       127 iiviNK~D~~  136 (213)
T cd04167         127 VLVINKIDRL  136 (213)
T ss_pred             EEEEECcccC
Confidence            9999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>KOG1191|consensus

Probab=99.42  E-value=1e-12  Score=145.71  Aligned_cols=228  Identities=17%  Similarity=0.118  Sum_probs=144.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh-h--------hhHh
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR-S--------ITQS   75 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~-s--------l~~~   75 (730)
                      .-++|+|+|+||||||||+|.|.+.+.. +...|.++.|-....++++|  +.+.|.||+|..+.. .        ....
T Consensus       267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k  344 (531)
T KOG1191|consen  267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARK  344 (531)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHH
Confidence            3479999999999999999999987764 34445555555556666777  889999999976511 1        1134


Q ss_pred             hhccccEEEEEeec--CCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCC
Q psy17467         76 YYRSAHALILVYDI--SCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKT  153 (730)
Q Consensus        76 ~~r~ADaIILVyDv--td~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~  153 (730)
                      -++.||+|++|+|.  ++.++-..+.+.++....-.      ..+.+                   .....+++++.||.
T Consensus       345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~------~~~~~-------------------~~~~~~~i~~~nk~  399 (531)
T KOG1191|consen  345 RIERADVILLVVDAEESDTESDLKIARILETEGVGL------VVIVN-------------------KMEKQRIILVANKS  399 (531)
T ss_pred             HHhhcCEEEEEecccccccccchHHHHHHHHhccce------EEEec-------------------cccccceEEEechh
Confidence            47789999999999  55555545444444432211      11110                   11345677777777


Q ss_pred             CcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecC
Q psy17467        154 DLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAK  233 (730)
Q Consensus       154 DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAk  233 (730)
                      |+..+..               .+                        .|.+..  .   ..+ . .....-...++|++
T Consensus       400 D~~s~~~---------------~~------------------------~~~~~~--~---~~~-~-~~~~~~i~~~vs~~  433 (531)
T KOG1191|consen  400 DLVSKIP---------------EM------------------------TKIPVV--Y---PSA-E-GRSVFPIVVEVSCT  433 (531)
T ss_pred             hccCccc---------------cc------------------------cCCcee--c---ccc-c-cCcccceEEEeeec
Confidence            7753210               00                        111100  0   000 0 00011136779999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHHhhcCCCCceeeec
Q psy17467        234 ASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNIDIKSVS  313 (730)
Q Consensus       234 tG~GVeeLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~~k~~p~~~~~~~~  313 (730)
                      |++|++++-..+.+.+...                         +....+.|+.+.+++.+-.+.+..  .         
T Consensus       434 tkeg~~~L~~all~~~~~~-------------------------~~~~~s~~~t~~~~r~~~~~r~~~--~---------  477 (531)
T KOG1191|consen  434 TKEGCERLSTALLNIVERL-------------------------VVSPHSAPPTLSQKRIKELLRTCA--A---------  477 (531)
T ss_pred             hhhhHHHHHHHHHHHHHHh-------------------------hcCCCCCchhhcchhHHHHHHhhh--h---------
Confidence            9999999999888776211                         123455677777776666554432  1         


Q ss_pred             cccccchhhHHHhHhhhhhhhccCCceeEEEeec
Q psy17467        314 GISQIRSDIVKSLSLYYYTFVDLLHFKDCVYLSG  347 (730)
Q Consensus       314 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (730)
                           +..+.+|+.+.+++-+++.+.|+|+-.++
T Consensus       478 -----~~l~~~~~~k~~~~D~~la~~~lR~a~~~  506 (531)
T KOG1191|consen  478 -----PELERRFLAKQLKEDIDLAGEPLRLAQRS  506 (531)
T ss_pred             -----hhHHHHHHhhhcccchhhccchHHHHHhh
Confidence                 26678999999999999999999986554

>COG1159 Era GTPase [General function prediction only]

Probab=99.41  E-value=4.2e-12  Score=134.34  Aligned_cols=157  Identities=18%  Similarity=0.134  Sum_probs=102.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh--------hhhHhh
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPG-QGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR--------SITQSY   76 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~-~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~--------sl~~~~   76 (730)
                      ..--|+|+|.||||||||+|++++.+.... ..|.++.......++.+  ..++.++||||..+-.        ......
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~~s   82 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAARSA   82 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence            345799999999999999999999887543 44555434434444444  4789999999953221        222345


Q ss_pred             hccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467         77 YRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD  156 (730)
Q Consensus        77 ~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~  156 (730)
                      +.++|+++||.|+++...-.+ ...++.++.                                  .+.|++++.||.|..
T Consensus        83 l~dvDlilfvvd~~~~~~~~d-~~il~~lk~----------------------------------~~~pvil~iNKID~~  127 (298)
T COG1159          83 LKDVDLILFVVDADEGWGPGD-EFILEQLKK----------------------------------TKTPVILVVNKIDKV  127 (298)
T ss_pred             hccCcEEEEEEeccccCCccH-HHHHHHHhh----------------------------------cCCCeEEEEEccccC
Confidence            789999999999987432211 112222211                                  356888888999986


Q ss_pred             hhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC-CeEEEEecCCC
Q psy17467        157 EDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYLETSAKAS  235 (730)
Q Consensus       157 ~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg-~~fvEtSAktG  235 (730)
                      +....+                                                  ....+.+..... ...+++||++|
T Consensus       128 ~~~~~l--------------------------------------------------~~~~~~~~~~~~f~~ivpiSA~~g  157 (298)
T COG1159         128 KPKTVL--------------------------------------------------LKLIAFLKKLLPFKEIVPISALKG  157 (298)
T ss_pred             CcHHHH--------------------------------------------------HHHHHHHHhhCCcceEEEeecccc
Confidence            533210                                                  112222233332 26899999999


Q ss_pred             CChHHHHHHHHHHH
Q psy17467        236 DNVEKLFMQIAAEL  249 (730)
Q Consensus       236 ~GVeeLFe~Li~~l  249 (730)
                      .|++.+.+.+...+
T Consensus       158 ~n~~~L~~~i~~~L  171 (298)
T COG1159         158 DNVDTLLEIIKEYL  171 (298)
T ss_pred             CCHHHHHHHHHHhC
Confidence            99999999887766

>KOG0072|consensus

Probab=99.40  E-value=4.7e-13  Score=127.76  Aligned_cols=96  Identities=30%  Similarity=0.471  Sum_probs=78.7

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI   83 (730)
                      .+...+++++|..|+|||+++.++.-++.. +..|++|  +...++++.+  ..+++||..|+...+.+|+.||.+.|++
T Consensus        15 ~e~e~rililgldGaGkttIlyrlqvgevv-ttkPtig--fnve~v~yKN--Lk~~vwdLggqtSirPyWRcYy~dt~av   89 (182)
T KOG0072|consen   15 PEREMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIG--FNVETVPYKN--LKFQVWDLGGQTSIRPYWRCYYADTDAV   89 (182)
T ss_pred             CccceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCC--cCcccccccc--ccceeeEccCcccccHHHHHHhcccceE
Confidence            346689999999999999999998876654 4458887  4455666655  8899999999999999999999999999


Q ss_pred             EEEeecCCCCchhhhHHHHHH
Q psy17467         84 ILVYDISCQPTFDCLTDWLRE  104 (730)
Q Consensus        84 ILVyDvtd~eSfe~L~~wlee  104 (730)
                      |+|+|.+|+.........+..
T Consensus        90 IyVVDssd~dris~a~~el~~  110 (182)
T KOG0072|consen   90 IYVVDSSDRDRISIAGVELYS  110 (182)
T ss_pred             EEEEeccchhhhhhhHHHHHH
Confidence            999999998777655543333

>PRK10218 GTP-binding protein; Provisional

Probab=99.40  E-value=4.4e-12  Score=147.45  Aligned_cols=89  Identities=24%  Similarity=0.372  Sum_probs=71.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHc--CCCCCCC------------CCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhh
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQ--GVFPPGQ------------GATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSI   72 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~--~~f~~~~------------~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl   72 (730)
                      .-+|+|+|..++|||||+++|+.  +.+...+            ..+.|.++......++.+.+.+++|||||+.+|...
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~   84 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE   84 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence            46899999999999999999996  4333221            234566666666666666689999999999999999


Q ss_pred             hHhhhccccEEEEEeecCCCCch
Q psy17467         73 TQSYYRSAHALILVYDISCQPTF   95 (730)
Q Consensus        73 ~~~~~r~ADaIILVyDvtd~eSf   95 (730)
                      +..+++.+|++|+|+|+++....
T Consensus        85 v~~~l~~aDg~ILVVDa~~G~~~  107 (607)
T PRK10218         85 VERVMSMVDSVLLVVDAFDGPMP  107 (607)
T ss_pred             HHHHHHhCCEEEEEEecccCccH
Confidence            99999999999999999876433

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.40  E-value=2.3e-12  Score=148.24  Aligned_cols=152  Identities=22%  Similarity=0.187  Sum_probs=115.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh------hhhHhhhc--c
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR------SITQSYYR--S   79 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~------sl~~~~~r--~   79 (730)
                      .+|+++|.||||||||+|++++.+.....+|.++++.....+.+.+  ..++++|+||.....      .+.+.|+.  +
T Consensus         4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~   81 (653)
T COG0370           4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK   81 (653)
T ss_pred             ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence            5699999999999999999999999999999999999999998888  458999999965432      23334433  5


Q ss_pred             ccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhh
Q psy17467         80 AHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDE  159 (730)
Q Consensus        80 ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e  159 (730)
                      .|++|-|.|.+|.+.--.+.-.+-+                                     -+.|++++-|++|.    
T Consensus        82 ~D~ivnVvDAtnLeRnLyltlQLlE-------------------------------------~g~p~ilaLNm~D~----  120 (653)
T COG0370          82 PDLIVNVVDATNLERNLYLTLQLLE-------------------------------------LGIPMILALNMIDE----  120 (653)
T ss_pred             CCEEEEEcccchHHHHHHHHHHHHH-------------------------------------cCCCeEEEeccHhh----
Confidence            7999999999985532222211111                                     24455666655555    


Q ss_pred             HHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChH
Q psy17467        160 HVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVE  239 (730)
Q Consensus       160 ~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVe  239 (730)
                                                                     .++.--.-+.+++.+.+|++++++||++|.|++
T Consensus       121 -----------------------------------------------A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~  153 (653)
T COG0370         121 -----------------------------------------------AKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLE  153 (653)
T ss_pred             -----------------------------------------------HHhcCCcccHHHHHHHhCCCEEEEEeecCCCHH
Confidence                                                           333334456778899999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy17467        240 KLFMQIAAEL  249 (730)
Q Consensus       240 eLFe~Li~~l  249 (730)
                      ++.+.+.+..
T Consensus       154 ~l~~~i~~~~  163 (653)
T COG0370         154 ELKRAIIELA  163 (653)
T ss_pred             HHHHHHHHhc
Confidence            9999988766

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.39  E-value=3e-12  Score=138.49  Aligned_cols=82  Identities=22%  Similarity=0.267  Sum_probs=60.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEe---------------------CC-eEEEEEEEeCCCc-
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEI---------------------NN-ERIKLQIWDTAGQ-   66 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~v---------------------dg-~~v~LqLwDTpG~-   66 (730)
                      |+++|.||||||||+|++++..+....+|..+.++......+                     ++ ..+.+++|||||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            579999999999999999998876544454443443333322                     23 3478999999997 


Q ss_pred             ---hhhhhhhHhh---hccccEEEEEeecCC
Q psy17467         67 ---ERFRSITQSY---YRSAHALILVYDISC   91 (730)
Q Consensus        67 ---e~~~sl~~~~---~r~ADaIILVyDvtd   91 (730)
                         .++..+...+   +++||++++|+|++.
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~  111 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG  111 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence               4455555554   899999999999974

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.39  E-value=3.8e-12  Score=141.72  Aligned_cols=163  Identities=18%  Similarity=0.155  Sum_probs=100.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCc------ceeeEE----------------EEEEEeCC------eEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGAT------IGVDFM----------------IKTVEINN------ERI   56 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pT------ig~d~~----------------~~~i~vdg------~~v   56 (730)
                      +..++|+++|..++|||||+++|++... ..+...      +...+.                ......++      ...
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~-d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWT-DTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR   80 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeec-ccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence            3468999999999999999999975321 111111      111000                00000011      136


Q ss_pred             EEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcc
Q psy17467         57 KLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGL  136 (730)
Q Consensus        57 ~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~  136 (730)
                      .+.+|||||+++|...+......+|++|+|+|+++........+.+..+...                            
T Consensus        81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~----------------------------  132 (406)
T TIGR03680        81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII----------------------------  132 (406)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc----------------------------
Confidence            7999999999999877777788899999999999753111222222222110                            


Q ss_pred             cccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHH
Q psy17467        137 LCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVG  216 (730)
Q Consensus       137 ~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~  216 (730)
                           ...|++++.||+|+.+.+...                                                ...++.
T Consensus       133 -----gi~~iIVvvNK~Dl~~~~~~~------------------------------------------------~~~~~i  159 (406)
T TIGR03680       133 -----GIKNIVIVQNKIDLVSKEKAL------------------------------------------------ENYEEI  159 (406)
T ss_pred             -----CCCeEEEEEEccccCCHHHHH------------------------------------------------HHHHHH
Confidence                 113577888999986432110                                                011222


Q ss_pred             HHHHHh---cCCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467        217 EDFAKR---HDMYYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       217 ~~lak~---lg~~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                      .++...   .+++++++||++|.|++++++.|...+
T Consensus       160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence            233322   257899999999999999999987654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.37  E-value=3.4e-12  Score=148.26  Aligned_cols=113  Identities=22%  Similarity=0.327  Sum_probs=80.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc--CCCCCCC------------CCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhH
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ--GVFPPGQ------------GATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQ   74 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~--~~f~~~~------------~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~   74 (730)
                      +|+|+|..++|||||+.+|+.  +.+....            ....|.+.......+.+..+.+.||||||+.+|.....
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            699999999999999999985  3332211            11223334444333333448899999999999998889


Q ss_pred             hhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCC
Q psy17467         75 SYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTD  154 (730)
Q Consensus        75 ~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~D  154 (730)
                      .+++.+|++|+|+|+++.. ......|+..+..                                  .+.|+++|+||+|
T Consensus        83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----------------------------------~~ip~IVviNKiD  127 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----------------------------------LGLKPIVVINKID  127 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----------------------------------CCCCEEEEEECCC
Confidence            9999999999999998743 3333455555432                                  3567888899999


Q ss_pred             cc
Q psy17467        155 LD  156 (730)
Q Consensus       155 L~  156 (730)
                      +.
T Consensus       128 ~~  129 (594)
T TIGR01394       128 RP  129 (594)
T ss_pred             CC
Confidence            85

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.37  E-value=1.3e-11  Score=143.45  Aligned_cols=92  Identities=25%  Similarity=0.264  Sum_probs=62.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCC----CcceeeEEEEEEEe--CCeEE----------EEEEEeCCCchhhh
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQG----ATIGVDFMIKTVEI--NNERI----------KLQIWDTAGQERFR   70 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~----pTig~d~~~~~i~v--dg~~v----------~LqLwDTpG~e~~~   70 (730)
                      .--|+++|.+|+|||||++++.+........    .++|.++.......  .+..+          .+.||||||++.|.
T Consensus         6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~   85 (586)
T PRK04004          6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT   85 (586)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH
Confidence            3469999999999999999998664432221    23332222211100  01111          16899999999999


Q ss_pred             hhhHhhhccccEEEEEeecCC---CCchhhh
Q psy17467         71 SITQSYYRSAHALILVYDISC---QPTFDCL   98 (730)
Q Consensus        71 sl~~~~~r~ADaIILVyDvtd---~eSfe~L   98 (730)
                      .++...+..+|++|+|+|+++   +.+++.+
T Consensus        86 ~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i  116 (586)
T PRK04004         86 NLRKRGGALADIAILVVDINEGFQPQTIEAI  116 (586)
T ss_pred             HHHHHhHhhCCEEEEEEECCCCCCHhHHHHH
Confidence            988888999999999999997   4444443

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.36  E-value=6.3e-12  Score=140.27  Aligned_cols=91  Identities=19%  Similarity=0.156  Sum_probs=58.5

Q ss_pred             CCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCC----CcceeeEEEEEEE------------------eC--C----
Q psy17467          2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQG----ATIGVDFMIKTVE------------------IN--N----   53 (730)
Q Consensus         2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~----pTig~d~~~~~i~------------------vd--g----   53 (730)
                      +.++..++|+++|..++|||||+.+|.+. +.....    ..++.+.......                  ++  +    
T Consensus         4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~-~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (411)
T PRK04000          4 EKVQPEVNIGMVGHVDHGKTTLVQALTGV-WTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETE   82 (411)
T ss_pred             ccCCCcEEEEEEccCCCCHHHHHHHhhCe-ecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccc
Confidence            45677899999999999999999999653 111111    1111111100000                  01  1    


Q ss_pred             eEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCC
Q psy17467         54 ERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQP   93 (730)
Q Consensus        54 ~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~e   93 (730)
                      ....+.||||||+++|..........+|++++|+|++++.
T Consensus        83 ~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~  122 (411)
T PRK04000         83 LLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPC  122 (411)
T ss_pred             cccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCC
Confidence            1357999999999887654444455679999999999653

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.36  E-value=1.3e-11  Score=144.07  Aligned_cols=156  Identities=15%  Similarity=0.128  Sum_probs=101.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC---CCCCCCCCcceeeEEEEEEEe-CCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG---VFPPGQGATIGVDFMIKTVEI-NNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~---~f~~~~~pTig~d~~~~~i~v-dg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      -|+++|..++|||||+++|++.   .+.......++.+.....+.. ++  ..+.+|||||+++|.......+..+|+++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~l   79 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHAL   79 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence            3889999999999999999963   333333334444443333333 33  45899999999998766667788999999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCc-eEEeccCCCcchhhHHHH
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALA-TALASDKTDLDEDEHVLA  163 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~P-VVLVGNK~DL~~~e~~~~  163 (730)
                      +|+|+++...-+. .+.+..+ ..                                 .+.| +++|.||+|+.+.+..  
T Consensus        80 LVVda~eg~~~qT-~ehl~il-~~---------------------------------lgi~~iIVVlNKiDlv~~~~~--  122 (614)
T PRK10512         80 LVVACDDGVMAQT-REHLAIL-QL---------------------------------TGNPMLTVALTKADRVDEARI--  122 (614)
T ss_pred             EEEECCCCCcHHH-HHHHHHH-HH---------------------------------cCCCeEEEEEECCccCCHHHH--
Confidence            9999987422111 1111111 10                                 1233 4678899998642210  


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC---CeEEEEecCCCCChHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD---MYYLETSAKASDNVEK  240 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg---~~fvEtSAktG~GVee  240 (730)
                                                                    ....++..++....+   ++++++||++|.|+++
T Consensus       123 ----------------------------------------------~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~  156 (614)
T PRK10512        123 ----------------------------------------------AEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA  156 (614)
T ss_pred             ----------------------------------------------HHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence                                                          001234455555444   6899999999999999


Q ss_pred             HHHHHHHHH
Q psy17467        241 LFMQIAAEL  249 (730)
Q Consensus       241 LFe~Li~~l  249 (730)
                      +++.|....
T Consensus       157 L~~~L~~~~  165 (614)
T PRK10512        157 LREHLLQLP  165 (614)
T ss_pred             HHHHHHHhh
Confidence            999997654

>cd04169 RF3 RF3 subfamily

Probab=99.35  E-value=1e-11  Score=131.25  Aligned_cols=112  Identities=12%  Similarity=0.086  Sum_probs=71.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCC-C----------------CCCC---cceeeEEEEEEEeCCeEEEEEEEeCCCchh
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFP-P----------------GQGA---TIGVDFMIKTVEINNERIKLQIWDTAGQER   68 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~-~----------------~~~p---Tig~d~~~~~i~vdg~~v~LqLwDTpG~e~   68 (730)
                      +|+|+|.+|+|||||+++++...-. .                .+.+   .-+.+.......++...+.+++|||||+.+
T Consensus         4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d   83 (267)
T cd04169           4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED   83 (267)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence            6999999999999999999842110 0                0000   012223333334444458899999999998


Q ss_pred             hhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCch
Q psy17467         69 FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL  124 (730)
Q Consensus        69 ~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl  124 (730)
                      |.......++.+|++|+|+|+++..+.+ ...++.....   .+.|+++++||.|.
T Consensus        84 f~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~---~~~P~iivvNK~D~  135 (267)
T cd04169          84 FSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL---RGIPIITFINKLDR  135 (267)
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh---cCCCEEEEEECCcc
Confidence            8876777889999999999998754322 2233333221   24455555555443

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.34  E-value=1.4e-11  Score=118.87  Aligned_cols=135  Identities=21%  Similarity=0.249  Sum_probs=92.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCch----hhhhhhHhhhccccEEE
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE----RFRSITQSYYRSAHALI   84 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e----~~~sl~~~~~r~ADaII   84 (730)
                      ||+++|+.|+|||||+++|.+....  +.-|.       .+.+.+     .++||||..    .+.+..-....+||+|+
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~--~~KTq-------~i~~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIR--YKKTQ-------AIEYYD-----NTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCC--cCccc-------eeEecc-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            7999999999999999999886542  22222       222222     458999953    22222223455899999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      +|.|.+++.+.--=                                    |+.+  .-+.||+-|.||+|+..+      
T Consensus        69 ll~dat~~~~~~pP------------------------------------~fa~--~f~~pvIGVITK~Dl~~~------  104 (143)
T PF10662_consen   69 LLQDATEPRSVFPP------------------------------------GFAS--MFNKPVIGVITKIDLPSD------  104 (143)
T ss_pred             EEecCCCCCccCCc------------------------------------hhhc--ccCCCEEEEEECccCccc------
Confidence            99999987653210                                    1111  135788888888888631      


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFM  243 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe  243 (730)
                                                                   ....+.++++.+.-|+ ..|++|+.+|+||++|.+
T Consensus       105 ---------------------------------------------~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~  139 (143)
T PF10662_consen  105 ---------------------------------------------DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKD  139 (143)
T ss_pred             ---------------------------------------------hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHH
Confidence                                                         1234677778888888 589999999999999998


Q ss_pred             HHH
Q psy17467        244 QIA  246 (730)
Q Consensus       244 ~Li  246 (730)
                      .|-
T Consensus       140 ~L~  142 (143)
T PF10662_consen  140 YLE  142 (143)
T ss_pred             HHh
Confidence            763

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>KOG1423|consensus

Probab=99.33  E-value=2.2e-11  Score=128.80  Aligned_cols=120  Identities=19%  Similarity=0.173  Sum_probs=77.7

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhh-----------
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSI-----------   72 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl-----------   72 (730)
                      ..+.+.|+|+|.||||||||.|.+++.+......-.-+ +.....-.+-....++.|+||||.-.-...           
T Consensus        69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~T-Tr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq  147 (379)
T KOG1423|consen   69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHT-TRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ  147 (379)
T ss_pred             cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccc-eeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence            34678999999999999999999999877654322222 122222223333478999999995321111           


Q ss_pred             -hHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEecc
Q psy17467         73 -TQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASD  151 (730)
Q Consensus        73 -~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGN  151 (730)
                       ....+..||++++|+|+++....-.-+ .+..+..+                                 .+.|.++|-|
T Consensus       148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~-vl~~l~~y---------------------------------s~ips~lvmn  193 (379)
T KOG1423|consen  148 NPRDAAQNADCVVVVVDASATRTPLHPR-VLHMLEEY---------------------------------SKIPSILVMN  193 (379)
T ss_pred             CHHHHHhhCCEEEEEEeccCCcCccChH-HHHHHHHH---------------------------------hcCCceeecc
Confidence             123467899999999999854433321 22333322                                 4678888889


Q ss_pred             CCCcchh
Q psy17467        152 KTDLDED  158 (730)
Q Consensus       152 K~DL~~~  158 (730)
                      |.|....
T Consensus       194 kid~~k~  200 (379)
T KOG1423|consen  194 KIDKLKQ  200 (379)
T ss_pred             chhcchh
Confidence            9998654

>PTZ00258 GTP-binding protein; Provisional

Probab=99.33  E-value=1.4e-11  Score=136.37  Aligned_cols=248  Identities=15%  Similarity=0.046  Sum_probs=145.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe---------------EEEEEEEeCCCchhhh
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE---------------RIKLQIWDTAGQERFR   70 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~---------------~v~LqLwDTpG~e~~~   70 (730)
                      .-++|+|||.||||||||+|++++.......+|..+.++....+.+.+.               ..+++++||||...-.
T Consensus        20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga   99 (390)
T PTZ00258         20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA   99 (390)
T ss_pred             CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence            3478999999999999999999988877776788877777777776543               2458999999964321


Q ss_pred             ----hhhH---hhhccccEEEEEeecCCCC-------c---hhhhHHHHHHHH--------HHhc---ccceEEEEec--
Q psy17467         71 ----SITQ---SYYRSAHALILVYDISCQP-------T---FDCLTDWLREIE--------EYAS---FKVLRVLVGG--  120 (730)
Q Consensus        71 ----sl~~---~~~r~ADaIILVyDvtd~e-------S---fe~L~~wleeI~--------~~~~---~~~piVLVg~--  120 (730)
                          .+..   ..++++|++++|+|...-.       +   .+++.....++.        +...   ......-...  
T Consensus       100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f~d~~v~h~~~~~dp~~d~~~i~~EL~~~d~~~~ek~~~~~~k~~~~~~~~~~~  179 (390)
T PTZ00258        100 SEGEGLGNAFLSHIRAVDGIYHVVRAFEDEDITHVEGEIDPVRDLEIISSELILKDLEFVEKRLDELTKKRKKKKKKKEE  179 (390)
T ss_pred             cchhHHHHHHHHHHHHCCEEEEEEeCCCCCCccccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccccchhhH
Confidence                1222   3467899999999974211       1   222222222211        1100   0000000000  


Q ss_pred             ---cCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCcc
Q psy17467        121 ---TSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIH  197 (730)
Q Consensus       121 ---k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~  197 (730)
                         ...++.+.+.+.+         +.|+-    ..++.+++.                       ..-..+.-...+|.
T Consensus       180 ~~~~~~l~~v~~~L~~---------~~~~~----~~~~~~~e~-----------------------~~l~~l~llt~KP~  223 (390)
T PTZ00258        180 KVELDVLKKVLEWLEE---------GKPVR----DGDWTDKEI-----------------------EILNEYQLLTAKPM  223 (390)
T ss_pred             HHHHHHHHHHHHHHHc---------CCccc----cCCCCHHHH-----------------------HHHHHhchhhcCCE
Confidence               0111122222222         11110    012222111                       11122333567899


Q ss_pred             ccccccc--cc-cCCCCChHHHHHHHHhc-CCeEEEEecCCCC-----------------------ChHHHHHHHHHHHH
Q psy17467        198 CMARNKI--DR-EDREIPTEVGEDFAKRH-DMYYLETSAKASD-----------------------NVEKLFMQIAAELM  250 (730)
Q Consensus       198 ivVgNK~--DL-~~R~Vs~ee~~~lak~l-g~~fvEtSAktG~-----------------------GVeeLFe~Li~~l~  250 (730)
                      ++|.|+.  |+ ....-..++..+++... +..++.+||+...                       |++.+...+++.+ 
T Consensus       224 iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~v~~sa~~E~el~~l~~~~e~~~fl~~~g~~~~gl~~li~~~~~lL-  302 (390)
T PTZ00258        224 IYLVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPIIPYSAEFEEELAELGSEEERKEYLEEYGIKQSMLDKIIKTGYKLL-  302 (390)
T ss_pred             EEEEECchhhhcccchHHHHHHHHHHHhcCCCeEEEeeHHHHHHHHhcCCHHHHHHHHHHcCCCcccHHHHHHHHHHHh-
Confidence            9999998  75 22121234455566666 4789999986543                       5555555555554 


Q ss_pred             HHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHH-hhcCCCCcee
Q psy17467        251 EKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQI-VKKFPNIDIK  310 (730)
Q Consensus       251 e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~-~k~~p~~~~~  310 (730)
                                      .+++.|+..+    ...++-.++++++..+.|-. |.++...|+.
T Consensus       303 ----------------~li~ffT~g~----~e~raw~i~~Gsta~~aAg~IHsD~~kgFi~  343 (390)
T PTZ00258        303 ----------------NLIHFFTAGP----DEVRCWTIQKGTKAPQAAGVIHSDFEKGFIC  343 (390)
T ss_pred             ----------------CCEEEEcCCC----CceeEEEeCCCCcHHHHHhhhhhHHhhCcEE
Confidence                            6777887553    34478889999999999987 9999999997

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.31  E-value=4.3e-11  Score=120.82  Aligned_cols=87  Identities=18%  Similarity=0.157  Sum_probs=61.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCC------CCCC-----C---CcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhh
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVF------PPGQ-----G---ATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSI   72 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f------~~~~-----~---pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl   72 (730)
                      .++|+++|..++|||||+++|+....      ...+     .   -.-|.+.......+.....++.++||||+..+...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            37899999999999999999985310      0000     0   02233333444445444577899999999888776


Q ss_pred             hHhhhccccEEEEEeecCCCC
Q psy17467         73 TQSYYRSAHALILVYDISCQP   93 (730)
Q Consensus        73 ~~~~~r~ADaIILVyDvtd~e   93 (730)
                      ....+..+|++++|+|++...
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~  102 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGP  102 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCC
Confidence            667788999999999998653

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.29  E-value=2.8e-11  Score=123.58  Aligned_cols=82  Identities=17%  Similarity=0.225  Sum_probs=57.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCC--C------------------------CCC-----CCcceeeEEEEEEEeCCeEEE
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVF--P------------------------PGQ-----GATIGVDFMIKTVEINNERIK   57 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f--~------------------------~~~-----~pTig~d~~~~~i~vdg~~v~   57 (730)
                      +|+++|..++|||||+.+|+...-  .                        ..+     ...++.+.....+.+++  ..
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~   78 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR   78 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence            489999999999999999863210  0                        000     11222233333344444  78


Q ss_pred             EEEEeCCCchhhhhhhHhhhccccEEEEEeecCCC
Q psy17467         58 LQIWDTAGQERFRSITQSYYRSAHALILVYDISCQ   92 (730)
Q Consensus        58 LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~   92 (730)
                      +.+|||||+.++.......+..+|++|+|+|+++.
T Consensus        79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~  113 (219)
T cd01883          79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKG  113 (219)
T ss_pred             EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCC
Confidence            99999999988776666677889999999999985

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.28  E-value=1.2e-10  Score=120.12  Aligned_cols=178  Identities=19%  Similarity=0.182  Sum_probs=100.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCC-----------------------cceeeEEE---------------EEEE
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGA-----------------------TIGVDFMI---------------KTVE   50 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~p-----------------------Tig~d~~~---------------~~i~   50 (730)
                      ||+++|+.++|||||+++|+.+.+......                       .+|.+..-               ....
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            689999999999999999998766432110                       01111000               0111


Q ss_pred             eCCeEEEEEEEeCCCchhhhhhhHhhhc--cccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHH
Q psy17467         51 INNERIKLQIWDTAGQERFRSITQSYYR--SAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVN  128 (730)
Q Consensus        51 vdg~~v~LqLwDTpG~e~~~sl~~~~~r--~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~  128 (730)
                      ..  ...+.++||||+++|.......+.  .+|++++|+|++...+-++ .+++..+..                     
T Consensus        81 ~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~~l~~l~~---------------------  136 (224)
T cd04165          81 KS--SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KEHLGLALA---------------------  136 (224)
T ss_pred             eC--CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HHHHHHHHH---------------------
Confidence            12  356899999999888654444443  6899999999887543222 223333221                     


Q ss_pred             HHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcc-cCCcCCcccccccccccc
Q psy17467        129 EMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASL-EGHSNNIHCMARNKIDRE  207 (730)
Q Consensus       129 ~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~-~~~~~~~~ivVgNK~DL~  207 (730)
                                   .+.|+++|.||+|+.+.......+...                 .... .........+|.+..|..
T Consensus       137 -------------~~ip~ivvvNK~D~~~~~~~~~~~~~l-----------------~~~L~~~g~~~~p~~~~~~~~~~  186 (224)
T cd04165         137 -------------LNIPVFVVVTKIDLAPANILQETLKDL-----------------KRILKVPGVRKLPVPVKSDDDVV  186 (224)
T ss_pred             -------------cCCCEEEEEECccccCHHHHHHHHHHH-----------------HHHhcCCCccccceeeeccccee
Confidence                         356888999999986433221111100                 0000 001111122333432221


Q ss_pred             CCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467        208 DREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       208 ~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li  246 (730)
                      .      .+........++++.+||.+|+|++++...|.
T Consensus       187 ~------~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         187 L------AASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             e------hhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence            0      01222223345899999999999999987764

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>KOG1489|consensus

Probab=99.27  E-value=3.6e-11  Score=127.77  Aligned_cols=156  Identities=22%  Similarity=0.272  Sum_probs=116.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhh----Hh---hhcccc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSIT----QS---YYRSAH   81 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~----~~---~~r~AD   81 (730)
                      .|-+||.||+|||||++++...+.....++.++..+...++.+++-. ++.+-|+||..+-.++.    ..   .++.|+
T Consensus       198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~  276 (366)
T KOG1489|consen  198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERCK  276 (366)
T ss_pred             ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhhc
Confidence            46799999999999999999998888888888877777788777633 38999999976544433    23   366899


Q ss_pred             EEEEEeecCCC---CchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchh
Q psy17467         82 ALILVYDISCQ---PTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDED  158 (730)
Q Consensus        82 aIILVyDvtd~---eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~  158 (730)
                      ..++|.|++..   .-++.++.+..++..+..                        +     -.+.|.++|+||+|+.+.
T Consensus       277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek------------------------~-----L~~rp~liVaNKiD~~ea  327 (366)
T KOG1489|consen  277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEK------------------------G-----LADRPALIVANKIDLPEA  327 (366)
T ss_pred             eEEEEEECCCcccCCHHHHHHHHHHHHHHHhh------------------------h-----hccCceEEEEeccCchhH
Confidence            99999999988   778888877777766542                        1     145677777788877432


Q ss_pred             hHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCC
Q psy17467        159 EHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDN  237 (730)
Q Consensus       159 e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~G  237 (730)
                      +.                                                     ....++++.+.- .++++||++|+|
T Consensus       328 e~-----------------------------------------------------~~l~~L~~~lq~~~V~pvsA~~~eg  354 (366)
T KOG1489|consen  328 EK-----------------------------------------------------NLLSSLAKRLQNPHVVPVSAKSGEG  354 (366)
T ss_pred             HH-----------------------------------------------------HHHHHHHHHcCCCcEEEeeeccccc
Confidence            21                                                     123556666643 489999999999


Q ss_pred             hHHHHHHHHH
Q psy17467        238 VEKLFMQIAA  247 (730)
Q Consensus       238 VeeLFe~Li~  247 (730)
                      ++++.+.+-+
T Consensus       355 l~~ll~~lr~  364 (366)
T KOG1489|consen  355 LEELLNGLRE  364 (366)
T ss_pred             hHHHHHHHhh
Confidence            9999877643

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.27  E-value=1.5e-10  Score=114.89  Aligned_cols=157  Identities=21%  Similarity=0.302  Sum_probs=111.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCC--------CCCCC--cceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhH
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFP--------PGQGA--TIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQ   74 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~--------~~~~p--Tig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~   74 (730)
                      ....||+|.|+-++||||++.++......        ..+..  ..+.-.....+.+++ ...+.++|||||++|.-+|+
T Consensus         8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-~~~v~LfgtPGq~RF~fm~~   86 (187)
T COG2229           8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-DTGVHLFGTPGQERFKFMWE   86 (187)
T ss_pred             ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-cceEEEecCCCcHHHHHHHH
Confidence            34579999999999999999999865431        11111  111223333333333 25689999999999999999


Q ss_pred             hhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCC
Q psy17467         75 SYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTD  154 (730)
Q Consensus        75 ~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~D  154 (730)
                      .+.++++++|++.|.+.+..| .....++.+...                                 ..+|+++++||.|
T Consensus        87 ~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~---------------------------------~~ip~vVa~NK~D  132 (187)
T COG2229          87 ILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR---------------------------------NPIPVVVAINKQD  132 (187)
T ss_pred             HHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc---------------------------------cCCCEEEEeeccc
Confidence            999999999999999999998 333333333221                                 1178888888888


Q ss_pred             cchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc--CCeEEEEec
Q psy17467        155 LDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH--DMYYLETSA  232 (730)
Q Consensus       155 L~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l--g~~fvEtSA  232 (730)
                      |.+                                                    ..+.++.+++.+..  ..+.++++|
T Consensus       133 L~~----------------------------------------------------a~ppe~i~e~l~~~~~~~~vi~~~a  160 (187)
T COG2229         133 LFD----------------------------------------------------ALPPEKIREALKLELLSVPVIEIDA  160 (187)
T ss_pred             cCC----------------------------------------------------CCCHHHHHHHHHhccCCCceeeeec
Confidence            864                                                    23445555544433  788999999


Q ss_pred             CCCCChHHHHHHHHHH
Q psy17467        233 KASDNVEKLFMQIAAE  248 (730)
Q Consensus       233 ktG~GVeeLFe~Li~~  248 (730)
                      .+++++.+..+.+...
T Consensus       161 ~e~~~~~~~L~~ll~~  176 (187)
T COG2229         161 TEGEGARDQLDVLLLK  176 (187)
T ss_pred             ccchhHHHHHHHHHhh
Confidence            9999999888877543

>PRK12735 elongation factor Tu; Reviewed

Probab=99.26  E-value=7.5e-11  Score=131.04  Aligned_cols=92  Identities=20%  Similarity=0.153  Sum_probs=63.7

Q ss_pred             CCCcceeEEEEEcCCCCCHHHHHHHHHcC-------CCC----CCC---CCcceeeEEEEEEEeCCeEEEEEEEeCCCch
Q psy17467          2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQG-------VFP----PGQ---GATIGVDFMIKTVEINNERIKLQIWDTAGQE   67 (730)
Q Consensus         2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~-------~f~----~~~---~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e   67 (730)
                      ++.+..++|+++|.+++|||||+++|++.       .+.    ...   .-.-|.+.......+.....++.|+||||+.
T Consensus         7 ~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~   86 (396)
T PRK12735          7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA   86 (396)
T ss_pred             CCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH
Confidence            34567799999999999999999999862       110    000   0122333333344444444678999999998


Q ss_pred             hhhhhhHhhhccccEEEEEeecCCCC
Q psy17467         68 RFRSITQSYYRSAHALILVYDISCQP   93 (730)
Q Consensus        68 ~~~sl~~~~~r~ADaIILVyDvtd~e   93 (730)
                      +|.......+..+|++++|+|+++..
T Consensus        87 ~f~~~~~~~~~~aD~~llVvda~~g~  112 (396)
T PRK12735         87 DYVKNMITGAAQMDGAILVVSAADGP  112 (396)
T ss_pred             HHHHHHHhhhccCCEEEEEEECCCCC
Confidence            87665556677899999999998753

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.25  E-value=5.9e-11  Score=124.63  Aligned_cols=88  Identities=23%  Similarity=0.326  Sum_probs=62.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCC------C------------CcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQ------G------------ATIGVDFMIKTVEINNERIKLQIWDTAGQERFR   70 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~------~------------pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~   70 (730)
                      +|+++|.+|+|||||+++++........      .            ...+.......+.+++  +.+.+|||||..++.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~   78 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV   78 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence            4899999999999999999753211100      0            0111122233444555  779999999998888


Q ss_pred             hhhHhhhccccEEEEEeecCCCCchhhh
Q psy17467         71 SITQSYYRSAHALILVYDISCQPTFDCL   98 (730)
Q Consensus        71 sl~~~~~r~ADaIILVyDvtd~eSfe~L   98 (730)
                      .....+++.+|++|+|+|.++..+....
T Consensus        79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~  106 (268)
T cd04170          79 GETRAALRAADAALVVVSAQSGVEVGTE  106 (268)
T ss_pred             HHHHHHHHHCCEEEEEEeCCCCCCHHHH
Confidence            8788899999999999999987665443

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd01850 CDC_Septin CDC/Septin

Probab=99.24  E-value=9e-11  Score=124.58  Aligned_cols=61  Identities=26%  Similarity=0.506  Sum_probs=49.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCC----------CCCcceeeEEEEEEEeCCeEEEEEEEeCCCc
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPG----------QGATIGVDFMIKTVEINNERIKLQIWDTAGQ   66 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~----------~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~   66 (730)
                      ..++|+++|.+|+|||||+|++++..+...          ..+|++.+.....+..+|..+.+.+|||||-
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGf   73 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGF   73 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCc
Confidence            568999999999999999999998876543          3456666666667777888899999999993

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.24  E-value=9.7e-11  Score=134.57  Aligned_cols=88  Identities=16%  Similarity=0.224  Sum_probs=61.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHc--CCCC---------------CCCC---CcceeeEEEEEEEeCCeEEEEEEEeCCC
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQ--GVFP---------------PGQG---ATIGVDFMIKTVEINNERIKLQIWDTAG   65 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~--~~f~---------------~~~~---pTig~d~~~~~i~vdg~~v~LqLwDTpG   65 (730)
                      ..-+|+|+|.+++|||||+++|+.  +...               .++.   ..-|.+.......++.+.+.+++|||||
T Consensus         9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG   88 (526)
T PRK00741          9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG   88 (526)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence            446899999999999999999973  1100               0000   0112223333333333448899999999


Q ss_pred             chhhhhhhHhhhccccEEEEEeecCCCC
Q psy17467         66 QERFRSITQSYYRSAHALILVYDISCQP   93 (730)
Q Consensus        66 ~e~~~sl~~~~~r~ADaIILVyDvtd~e   93 (730)
                      +.+|......+++.+|++|+|+|+++..
T Consensus        89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv  116 (526)
T PRK00741         89 HEDFSEDTYRTLTAVDSALMVIDAAKGV  116 (526)
T ss_pred             chhhHHHHHHHHHHCCEEEEEEecCCCC
Confidence            9998887777899999999999998753

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.24  E-value=2.7e-10  Score=114.42  Aligned_cols=173  Identities=13%  Similarity=0.140  Sum_probs=97.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccee---eEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHh-----hhcc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGV---DFMIKTVEINNERIKLQIWDTAGQERFRSITQS-----YYRS   79 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~---d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~-----~~r~   79 (730)
                      +||+++|++|||||||+|.+++..+.....++.+.   ......+... ....+.+|||||..........     .+.+
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            78999999999999999999986654332222221   1111111111 1236899999997543222222     2677


Q ss_pred             ccEEEEEeecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchh
Q psy17467         80 AHALILVYDISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDED  158 (730)
Q Consensus        80 ADaIILVyDvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~  158 (730)
                      +|++++|.|    .+|.... .|++.+..                                  .+.|+++|+||+|+...
T Consensus        81 ~d~~l~v~~----~~~~~~d~~~~~~l~~----------------------------------~~~~~ilV~nK~D~~~~  122 (197)
T cd04104          81 YDFFIIISS----TRFSSNDVKLAKAIQC----------------------------------MGKKFYFVRTKVDRDLS  122 (197)
T ss_pred             cCEEEEEeC----CCCCHHHHHHHHHHHH----------------------------------hCCCEEEEEecccchhh
Confidence            899999843    2344443 35555533                                  13577888999998532


Q ss_pred             hHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccC-CCCChHHHHHHHHhcCC---eEEEEecC-
Q psy17467        159 EHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDRED-REIPTEVGEDFAKRHDM---YYLETSAK-  233 (730)
Q Consensus       159 e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~-R~Vs~ee~~~lak~lg~---~fvEtSAk-  233 (730)
                      ....                               ..+     .+.+... -+--.+.........|.   .++-+|+. 
T Consensus       123 ~~~~-------------------------------~~~-----~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~  166 (197)
T cd04104         123 NEQR-------------------------------SKP-----RSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFD  166 (197)
T ss_pred             hhhc-------------------------------ccc-----ccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCC
Confidence            1100                               000     0000000 00001112222222232   58999998 


Q ss_pred             -CCCChHHHHHHHHHHHHHHHHH
Q psy17467        234 -ASDNVEKLFMQIAAELMEKLAE  255 (730)
Q Consensus       234 -tG~GVeeLFe~Li~~l~e~~~~  255 (730)
                       .+.|+..+.+.++..+.+..+.
T Consensus       167 ~~~~~~~~l~~~~~~~l~~~~~~  189 (197)
T cd04104         167 PSDYDFPKLRETLLKDLPAHKRH  189 (197)
T ss_pred             hhhcChHHHHHHHHHHhhHHHHH
Confidence             6799999999999999765544

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK12736 elongation factor Tu; Reviewed

Probab=99.23  E-value=2.9e-10  Score=126.23  Aligned_cols=89  Identities=18%  Similarity=0.150  Sum_probs=62.7

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCC-----------CC---CCcceeeEEEEEEEeCCeEEEEEEEeCCCchhh
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPP-----------GQ---GATIGVDFMIKTVEINNERIKLQIWDTAGQERF   69 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~-----------~~---~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~   69 (730)
                      .+..++|+++|..++|||||+++|++.....           ..   .-.-|.+.......+......+.+|||||+++|
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            4456899999999999999999998631100           00   012233344444555444567899999999888


Q ss_pred             hhhhHhhhccccEEEEEeecCCC
Q psy17467         70 RSITQSYYRSAHALILVYDISCQ   92 (730)
Q Consensus        70 ~sl~~~~~r~ADaIILVyDvtd~   92 (730)
                      ..........+|++++|+|+++.
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g  111 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDG  111 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCC
Confidence            66555556789999999999874

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.22  E-value=1.4e-10  Score=128.63  Aligned_cols=91  Identities=19%  Similarity=0.146  Sum_probs=63.2

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcC-----C--CC-----CCC--CCcceeeEEEEEEEeCCeEEEEEEEeCCCchh
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQG-----V--FP-----PGQ--GATIGVDFMIKTVEINNERIKLQIWDTAGQER   68 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~-----~--f~-----~~~--~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~   68 (730)
                      +.+..++|+++|..++|||||+++|++.     +  +.     ...  .-.-|.+.....+.++.....+.||||||+++
T Consensus         8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~   87 (394)
T TIGR00485         8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD   87 (394)
T ss_pred             CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence            4566799999999999999999999742     0  00     000  01123333344555555557889999999988


Q ss_pred             hhhhhHhhhccccEEEEEeecCCCC
Q psy17467         69 FRSITQSYYRSAHALILVYDISCQP   93 (730)
Q Consensus        69 ~~sl~~~~~r~ADaIILVyDvtd~e   93 (730)
                      |..........+|++++|+|+++..
T Consensus        88 f~~~~~~~~~~~D~~ilVvda~~g~  112 (394)
T TIGR00485        88 YVKNMITGAAQMDGAILVVSATDGP  112 (394)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCC
Confidence            8654445566789999999998753

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.22  E-value=3.6e-10  Score=114.09  Aligned_cols=157  Identities=20%  Similarity=0.274  Sum_probs=104.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCC----------chhhhhhhHh
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG----------QERFRSITQS   75 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG----------~e~~~sl~~~   75 (730)
                      ...-|+++|.+|||||||+|.+++.+......-|.|.+.....+.+++.   +.++|.||          .+.+..+...
T Consensus        23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~   99 (200)
T COG0218          23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEE   99 (200)
T ss_pred             CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence            3457999999999999999999997754444456666666677777764   88999998          2344455556


Q ss_pred             hhcc---ccEEEEEeecCCCCchhhh--HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEec
Q psy17467         76 YYRS---AHALILVYDISCQPTFDCL--TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALAS  150 (730)
Q Consensus        76 ~~r~---ADaIILVyDvtd~eSfe~L--~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVG  150 (730)
                      |++.   -.++++++|+..+..-.+.  -+|+.+                                     .++|++++.
T Consensus       100 YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~-------------------------------------~~i~~~vv~  142 (200)
T COG0218         100 YLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE-------------------------------------LGIPVIVVL  142 (200)
T ss_pred             HHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH-------------------------------------cCCCeEEEE
Confidence            6653   4688889998776554332  223333                                     567889999


Q ss_pred             cCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCe--EE
Q psy17467        151 DKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMY--YL  228 (730)
Q Consensus       151 NK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~--fv  228 (730)
                      ||+|.....+....+                                               ....+.+.......  ++
T Consensus       143 tK~DKi~~~~~~k~l-----------------------------------------------~~v~~~l~~~~~~~~~~~  175 (200)
T COG0218         143 TKADKLKKSERNKQL-----------------------------------------------NKVAEELKKPPPDDQWVV  175 (200)
T ss_pred             EccccCChhHHHHHH-----------------------------------------------HHHHHHhcCCCCccceEE
Confidence            999987543221111                                               01111222222222  78


Q ss_pred             EEecCCCCChHHHHHHHHHHH
Q psy17467        229 ETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       229 EtSAktG~GVeeLFe~Li~~l  249 (730)
                      ..|+.++.|++++...|...+
T Consensus       176 ~~ss~~k~Gi~~l~~~i~~~~  196 (200)
T COG0218         176 LFSSLKKKGIDELKAKILEWL  196 (200)
T ss_pred             EEecccccCHHHHHHHHHHHh
Confidence            889999999999988887765

>KOG1487|consensus

Probab=99.20  E-value=3.5e-11  Score=124.66  Aligned_cols=244  Identities=17%  Similarity=0.082  Sum_probs=166.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh----hh---Hhhhccc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS----IT---QSYYRSA   80 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s----l~---~~~~r~A   80 (730)
                      -||-++|.|.|||||++..+++...+...+...+.......+.+++  .++++.|.||..+-..    ..   -...+.|
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            3789999999999999999997665554444444445555666666  6799999998644322    11   2346789


Q ss_pred             cEEEEEeecCCCCchhhhH-HHHHHHHHHhcccceEEEEecc-----------CchhhHHHHHhhhcccccCCCCCceEE
Q psy17467         81 HALILVYDISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGT-----------SGLKIVNEMASAAGLLCTVDPALATAL  148 (730)
Q Consensus        81 DaIILVyDvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k-----------~dl~~~~~i~~~~g~~~~~~~~~PVVL  148 (730)
                      +.|++|.|+-.|-+-..+- ..++-+........|.+....+           .|++.+++++..++.+++.     +.+
T Consensus       138 nli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAd-----i~L  212 (358)
T KOG1487|consen  138 NLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSAD-----IAL  212 (358)
T ss_pred             cEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchh-----eee
Confidence            9999999999988876653 3455443333344444443333           6788889999999997752     111


Q ss_pred             eccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEE
Q psy17467        149 ASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYL  228 (730)
Q Consensus       149 VGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fv  228 (730)
                         ..|-                        +..-.++.+.++..|.|.+.+.||+|-    ++.||..-+-+.  ...+
T Consensus       213 ---r~Da------------------------T~DdLIdvVegnr~yVp~iyvLNkIds----ISiEELdii~~i--phav  259 (358)
T KOG1487|consen  213 ---RFDA------------------------TADDLIDVVEGNRIYVPCIYVLNKIDS----ISIEELDIIYTI--PHAV  259 (358)
T ss_pred             ---ecCc------------------------chhhhhhhhccCceeeeeeeeecccce----eeeeccceeeec--ccee
Confidence               1121                        112235566677789999999999983    444443322111  1369


Q ss_pred             EEecCCCCChHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccc-hhhHHHHHH-hhcCCC
Q psy17467        229 ETSAKASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDK-SLESCIKQI-VKKFPN  306 (730)
Q Consensus       229 EtSAktG~GVeeLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~-~~~~~~~~~-~k~~p~  306 (730)
                      .+||-++.|++++.+-+...+                 .+.|+|+++.+..+.-..|++++.. +.+.++|.. |+..-.
T Consensus       260 pISA~~~wn~d~lL~~mweyL-----------------~LvriYtkPKgq~PDy~~pVvLs~~~~sv~dfc~~ih~~~~~  322 (358)
T KOG1487|consen  260 PISAHTGWNFDKLLEKMWEYL-----------------KLVRIYTKPKGQPPDYTSPVVLSSERRSVEDFCNKIHKSILK  322 (358)
T ss_pred             ecccccccchHHHHHHHhhcc-----------------hheEEecCCCCCCCCCCCCceecCCcccHHHHHHHHHHHHHH
Confidence            999999999999999988877                 8899999999988877777777654 455566554 765544


Q ss_pred             Cc
Q psy17467        307 ID  308 (730)
Q Consensus       307 ~~  308 (730)
                      -|
T Consensus       323 ~f  324 (358)
T KOG1487|consen  323 QF  324 (358)
T ss_pred             hh
Confidence            44

>TIGR00503 prfC peptide chain release factor 3

Probab=99.20  E-value=3.3e-10  Score=130.19  Aligned_cols=88  Identities=15%  Similarity=0.188  Sum_probs=63.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHc-CCCCCC----------------C---CCcceeeEEEEEEEeCCeEEEEEEEeCC
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQ-GVFPPG----------------Q---GATIGVDFMIKTVEINNERIKLQIWDTA   64 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~-~~f~~~----------------~---~pTig~d~~~~~i~vdg~~v~LqLwDTp   64 (730)
                      ....+|+|+|.+++|||||+++++. +.....                +   ....|.+.....+.++.+.+.+.+||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            3456899999999999999999863 111100                0   0112333344444455555889999999


Q ss_pred             CchhhhhhhHhhhccccEEEEEeecCCC
Q psy17467         65 GQERFRSITQSYYRSAHALILVYDISCQ   92 (730)
Q Consensus        65 G~e~~~sl~~~~~r~ADaIILVyDvtd~   92 (730)
                      |+.+|.......++.+|++|+|+|+++.
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~g  116 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKG  116 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCC
Confidence            9998887667788999999999999874

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>CHL00071 tufA elongation factor Tu

Probab=99.20  E-value=5.5e-10  Score=124.63  Aligned_cols=92  Identities=20%  Similarity=0.175  Sum_probs=64.2

Q ss_pred             CCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCC------CCC--------CcceeeEEEEEEEeCCeEEEEEEEeCCCch
Q psy17467          2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPP------GQG--------ATIGVDFMIKTVEINNERIKLQIWDTAGQE   67 (730)
Q Consensus         2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~------~~~--------pTig~d~~~~~i~vdg~~v~LqLwDTpG~e   67 (730)
                      +..+..++|+++|.+++|||||+++|++..-..      .+.        -.-|.+.......+..+..++.|+||||+.
T Consensus         7 ~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~   86 (409)
T CHL00071          7 ERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA   86 (409)
T ss_pred             cCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH
Confidence            345677999999999999999999998641100      000        012333333334444444678899999998


Q ss_pred             hhhhhhHhhhccccEEEEEeecCCCC
Q psy17467         68 RFRSITQSYYRSAHALILVYDISCQP   93 (730)
Q Consensus        68 ~~~sl~~~~~r~ADaIILVyDvtd~e   93 (730)
                      +|.......+..+|++++|+|++...
T Consensus        87 ~~~~~~~~~~~~~D~~ilVvda~~g~  112 (409)
T CHL00071         87 DYVKNMITGAAQMDGAILVVSAADGP  112 (409)
T ss_pred             HHHHHHHHHHHhCCEEEEEEECCCCC
Confidence            87666666678999999999998653

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.18  E-value=2.9e-10  Score=128.40  Aligned_cols=97  Identities=15%  Similarity=0.195  Sum_probs=67.6

Q ss_pred             CCCCcceeEEEEEcCCCCCHHHHHHHHHcCCC--C------------------------CCCCC---cceeeEEEEEEEe
Q psy17467          1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVF--P------------------------PGQGA---TIGVDFMIKTVEI   51 (730)
Q Consensus         1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f--~------------------------~~~~p---Tig~d~~~~~i~v   51 (730)
                      |...+..++|+++|..++|||||+-+|+...-  .                        .+..+   .-|.+.......+
T Consensus         1 ~~~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~   80 (447)
T PLN00043          1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKF   80 (447)
T ss_pred             CCCCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEe
Confidence            44556779999999999999999999874110  0                        00000   1122222233334


Q ss_pred             CCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhhh
Q psy17467         52 NNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCL   98 (730)
Q Consensus        52 dg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L   98 (730)
                      ......+.++|+||+++|.......+..+|++|+|+|+++ .+|+..
T Consensus        81 ~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g  126 (447)
T PLN00043         81 ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAG  126 (447)
T ss_pred             cCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-Cceecc
Confidence            4455789999999999998888888999999999999987 445543

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.16  E-value=1.2e-09  Score=115.75  Aligned_cols=83  Identities=18%  Similarity=0.245  Sum_probs=60.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc--CCCC----------------CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ--GVFP----------------PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR   70 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~--~~f~----------------~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~   70 (730)
                      +|+++|.+|+|||||+++++.  +...                ......++.+.....+.+++  .++.+|||||+.++.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence            489999999999999999973  1100                00111223233334445555  789999999998888


Q ss_pred             hhhHhhhccccEEEEEeecCCCC
Q psy17467         71 SITQSYYRSAHALILVYDISCQP   93 (730)
Q Consensus        71 sl~~~~~r~ADaIILVyDvtd~e   93 (730)
                      ..+..+++.+|++|+|+|+++..
T Consensus        79 ~~~~~~l~~aD~ailVVDa~~g~  101 (270)
T cd01886          79 IEVERSLRVLDGAVAVFDAVAGV  101 (270)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCC
Confidence            88888999999999999998754

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK13351 elongation factor G; Reviewed

Probab=99.15  E-value=1.6e-10  Score=136.76  Aligned_cols=111  Identities=18%  Similarity=0.264  Sum_probs=76.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCC-------------CCC-------CCCcceeeEEEEEEEeCCeEEEEEEEeCCC
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVF-------------PPG-------QGATIGVDFMIKTVEINNERIKLQIWDTAG   65 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f-------------~~~-------~~pTig~d~~~~~i~vdg~~v~LqLwDTpG   65 (730)
                      ...+|+|+|..|+|||||+++|+...-             ..+       +..|+.  .....+.+++  +.+++|||||
T Consensus         7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~--~~~~~~~~~~--~~i~liDtPG   82 (687)
T PRK13351          7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIE--SAATSCDWDN--HRINLIDTPG   82 (687)
T ss_pred             cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcc--cceEEEEECC--EEEEEEECCC
Confidence            346999999999999999999985211             110       111222  2223444444  7899999999


Q ss_pred             chhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCch
Q psy17467         66 QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL  124 (730)
Q Consensus        66 ~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl  124 (730)
                      +.++...+..+++.+|++|+|+|+++..+.+....| ..+..   .+.|+++++||.|+
T Consensus        83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~  137 (687)
T PRK13351         83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDR  137 (687)
T ss_pred             cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCC
Confidence            999988889999999999999999998777655444 22222   23455555555443

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.15  E-value=6.8e-10  Score=118.90  Aligned_cols=158  Identities=22%  Similarity=0.239  Sum_probs=110.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh-----hhhhhH---hhhc
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER-----FRSITQ---SYYR   78 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~-----~~sl~~---~~~r   78 (730)
                      +..|+|.|.||||||||++++++.+.....+|.++-......+..++  ..+|++||||.-+     ...+-.   ..++
T Consensus       168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~  245 (346)
T COG1084         168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILALR  245 (346)
T ss_pred             CCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence            35689999999999999999999999888889888777777777776  6899999999521     111111   1122


Q ss_pred             -cccEEEEEeecCCCCc--hhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCc
Q psy17467         79 -SAHALILVYDISCQPT--FDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDL  155 (730)
Q Consensus        79 -~ADaIILVyDvtd~eS--fe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL  155 (730)
                       =+++|+|+||.+...-  .+.=..++++|+..-                                 +.|+++|.||.|.
T Consensus       246 hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f---------------------------------~~p~v~V~nK~D~  292 (346)
T COG1084         246 HLAGVILFLFDPSETCGYSLEEQISLLEEIKELF---------------------------------KAPIVVVINKIDI  292 (346)
T ss_pred             HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc---------------------------------CCCeEEEEecccc
Confidence             3689999999886544  444455777776532                                 2678888888887


Q ss_pred             chhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC-CeEEEEecCC
Q psy17467        156 DEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYLETSAKA  234 (730)
Q Consensus       156 ~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg-~~fvEtSAkt  234 (730)
                      .+.+.                                                    .+++.......| .....+|+..
T Consensus       293 ~~~e~----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~  320 (346)
T COG1084         293 ADEEK----------------------------------------------------LEEIEASVLEEGGEEPLKISATK  320 (346)
T ss_pred             cchhH----------------------------------------------------HHHHHHHHHhhccccccceeeee
Confidence            64321                                                    122332233333 3478889999


Q ss_pred             CCChHHHHHHHHHHHHH
Q psy17467        235 SDNVEKLFMQIAAELME  251 (730)
Q Consensus       235 G~GVeeLFe~Li~~l~e  251 (730)
                      +.+++.+-+.+.....+
T Consensus       321 ~~~~d~~~~~v~~~a~~  337 (346)
T COG1084         321 GCGLDKLREEVRKTALE  337 (346)
T ss_pred             hhhHHHHHHHHHHHhhc
Confidence            99999888877776543

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.11  E-value=4.1e-10  Score=128.04  Aligned_cols=88  Identities=22%  Similarity=0.261  Sum_probs=60.3

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCC---------------------------------CCcceeeEEEEEEE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQ---------------------------------GATIGVDFMIKTVE   50 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~---------------------------------~pTig~d~~~~~i~   50 (730)
                      .+..++|+++|..++|||||+.+|+...-....                                 ...++.+.....+ 
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~-  102 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF-  102 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe-
Confidence            456699999999999999999999753211110                                 0012222222233 


Q ss_pred             eCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCC
Q psy17467         51 INNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQP   93 (730)
Q Consensus        51 vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~e   93 (730)
                       .....++.||||||+++|.......+..+|++|+|+|+++..
T Consensus       103 -~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~  144 (474)
T PRK05124        103 -STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGV  144 (474)
T ss_pred             -ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCc
Confidence             333467899999999888654445578999999999998653

>KOG0090|consensus

Probab=99.11  E-value=2.4e-10  Score=115.84  Aligned_cols=190  Identities=21%  Similarity=0.224  Sum_probs=118.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhc---cccEEEE
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYR---SAHALIL   85 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r---~ADaIIL   85 (730)
                      .|+++|+.++|||+|+.+|..+.+..++.+.   +.......++.  -.+.++|.||+.+.+.-...++.   .+-+|||
T Consensus        40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSi---epn~a~~r~gs--~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF  114 (238)
T KOG0090|consen   40 AVLLVGLSDSGKTSLFTQLITGSHRGTVTSI---EPNEATYRLGS--ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF  114 (238)
T ss_pred             cEEEEecCCCCceeeeeehhcCCccCeeeee---ccceeeEeecC--cceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence            5899999999999999999998665544221   22333444433  23899999999988776666666   7999999


Q ss_pred             Eeec-CCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         86 VYDI-SCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        86 VyDv-td~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      |.|. +......++.+++.++.-.+.                            .....+|+++++||.|+..-.     
T Consensus       115 VVDSa~f~k~vrdvaefLydil~~~~----------------------------~~~~~~~vLIaCNKqDl~tAk-----  161 (238)
T KOG0090|consen  115 VVDSATFLKNVRDVAEFLYDILLDSR----------------------------VKKNKPPVLIACNKQDLFTAK-----  161 (238)
T ss_pred             EEeccccchhhHHHHHHHHHHHHhhc----------------------------cccCCCCEEEEecchhhhhcC-----
Confidence            9995 456666777777777654431                            123577889999999987421     


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHH----HHhcCCeEEEEecCCCCChHH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDF----AKRHDMYYLETSAKASDNVEK  240 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~l----ak~lg~~fvEtSAktG~GVee  240 (730)
                           .+-.|-+...++.......-+      ....++-.|..++.....++..+    +....+.|.|+|+++| ++++
T Consensus       162 -----t~~~Ir~~LEkEi~~lr~sRs------a~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~  229 (238)
T KOG0090|consen  162 -----TAEKIRQQLEKEIHKLRESRS------ALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQ  229 (238)
T ss_pred             -----cHHHHHHHHHHHHHHHHHHHh------hhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHH
Confidence                 111222222222222222211      11122333433333333444442    2234578999999999 8999


Q ss_pred             HHHHHHHH
Q psy17467        241 LFMQIAAE  248 (730)
Q Consensus       241 LFe~Li~~  248 (730)
                      +-+|+.+.
T Consensus       230 ~~~wi~~~  237 (238)
T KOG0090|consen  230 WESWIREA  237 (238)
T ss_pred             HHHHHHHh
Confidence            98887653

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.11  E-value=3.1e-10  Score=117.06  Aligned_cols=89  Identities=13%  Similarity=0.160  Sum_probs=63.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCC----------------CCcceeeEEEEEEEeC--------CeEEEEEEEeCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQ----------------GATIGVDFMIKTVEIN--------NERIKLQIWDTA   64 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~----------------~pTig~d~~~~~i~vd--------g~~v~LqLwDTp   64 (730)
                      +|+++|..++|||||+.+|+...-....                ...++.......+.+.        +..+.+++||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            6899999999999999999853211000                0011111112223333        447899999999


Q ss_pred             CchhhhhhhHhhhccccEEEEEeecCCCCchhh
Q psy17467         65 GQERFRSITQSYYRSAHALILVYDISCQPTFDC   97 (730)
Q Consensus        65 G~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~   97 (730)
                      |+.+|......+++.+|++|+|+|+++..+.+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t  114 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT  114 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH
Confidence            999999988999999999999999998766654

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PLN03126 Elongation factor Tu; Provisional

Probab=99.10  E-value=1.8e-09  Score=122.85  Aligned_cols=91  Identities=21%  Similarity=0.195  Sum_probs=63.2

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcC------CCCCC--------CCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQG------VFPPG--------QGATIGVDFMIKTVEINNERIKLQIWDTAGQER   68 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~------~f~~~--------~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~   68 (730)
                      ..+..++|+++|..++|||||+++|++.      .....        .....|.+.......+......+.++|+||+.+
T Consensus        77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~  156 (478)
T PLN03126         77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD  156 (478)
T ss_pred             ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence            3566799999999999999999999852      11110        011123333333333333346789999999998


Q ss_pred             hhhhhHhhhccccEEEEEeecCCCC
Q psy17467         69 FRSITQSYYRSAHALILVYDISCQP   93 (730)
Q Consensus        69 ~~sl~~~~~r~ADaIILVyDvtd~e   93 (730)
                      |.......+..+|++++|+|+++..
T Consensus       157 f~~~~~~g~~~aD~ailVVda~~G~  181 (478)
T PLN03126        157 YVKNMITGAAQMDGAILVVSGADGP  181 (478)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCC
Confidence            8766566677899999999998754

>KOG1490|consensus

Probab=99.09  E-value=4.5e-10  Score=125.03  Aligned_cols=205  Identities=18%  Similarity=0.181  Sum_probs=136.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhh----hhhhHhh-----hc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERF----RSITQSY-----YR   78 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~----~sl~~~~-----~r   78 (730)
                      =.++++|.||||||||+|..+.+.....++++++...+...+.+.-  ..+++.||||.-+.    ....+..     ..
T Consensus       169 rTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEmqsITALAH  246 (620)
T KOG1490|consen  169 RTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEMQIITALAH  246 (620)
T ss_pred             CeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHHHHHHHHHH
Confidence            3579999999999999999999998888888877666666655544  67899999996321    1111111     01


Q ss_pred             cccEEEEEeecCCCCch--hhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467         79 SAHALILVYDISCQPTF--DCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD  156 (730)
Q Consensus        79 ~ADaIILVyDvtd~eSf--e~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~  156 (730)
                      =-.+|+++.|++....+  +.-..+++.|+...                                .|.|+|+|.||+|+.
T Consensus       247 LraaVLYfmDLSe~CGySva~QvkLfhsIKpLF--------------------------------aNK~~IlvlNK~D~m  294 (620)
T KOG1490|consen  247 LRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF--------------------------------ANKVTILVLNKIDAM  294 (620)
T ss_pred             hhhhheeeeechhhhCCCHHHHHHHHHHhHHHh--------------------------------cCCceEEEeeccccc
Confidence            12478999999875444  44344667765432                                467788888888875


Q ss_pred             hhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCC
Q psy17467        157 EDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASD  236 (730)
Q Consensus       157 ~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~  236 (730)
                      ..+                                             |+.  +...+-.+.+...-+++++++|+.+.+
T Consensus       295 ~~e---------------------------------------------dL~--~~~~~ll~~~~~~~~v~v~~tS~~~ee  327 (620)
T KOG1490|consen  295 RPE---------------------------------------------DLD--QKNQELLQTIIDDGNVKVVQTSCVQEE  327 (620)
T ss_pred             Ccc---------------------------------------------ccC--HHHHHHHHHHHhccCceEEEecccchh
Confidence            322                                             111  111122334444456899999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccchh
Q psy17467        237 NVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSL  293 (730)
Q Consensus       237 GVeeLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~  293 (730)
                      ||.++-..+++.++..+-+............+.++.-..|...+..-+||.++.+..
T Consensus       328 gVm~Vrt~ACe~LLa~RVE~Klks~~~~n~vlnr~hvA~p~~rd~~~r~p~ip~~~~  384 (620)
T KOG1490|consen  328 GVMDVRTTACEALLAARVEQKLKSESRVNNVLNRIHLAEPAARDEVARPPCIPDSVK  384 (620)
T ss_pred             ceeeHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcccccccCCCcchHHH
Confidence            999999999999988877765554443335566666655655555566777666543

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.08  E-value=7.8e-10  Score=123.36  Aligned_cols=84  Identities=18%  Similarity=0.251  Sum_probs=58.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCC---------------------------------CCcceeeEEEEEEEeCCe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQ---------------------------------GATIGVDFMIKTVEINNE   54 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~---------------------------------~pTig~d~~~~~i~vdg~   54 (730)
                      +||+++|..++|||||+.+|+...-....                                 .-.++.+.....+..+  
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~--   78 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD--   78 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC--
Confidence            58999999999999999999742111000                                 0111222323333333  


Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCC
Q psy17467         55 RIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQP   93 (730)
Q Consensus        55 ~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~e   93 (730)
                      ...+.||||||+++|.......+..+|++|+|+|++...
T Consensus        79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~  117 (406)
T TIGR02034        79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGV  117 (406)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCC
Confidence            467899999999988765556678999999999998654

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK00049 elongation factor Tu; Reviewed

Probab=99.07  E-value=5.5e-09  Score=116.26  Aligned_cols=91  Identities=20%  Similarity=0.178  Sum_probs=64.1

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCC-----------CCC---CCcceeeEEEEEEEeCCeEEEEEEEeCCCchh
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFP-----------PGQ---GATIGVDFMIKTVEINNERIKLQIWDTAGQER   68 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~-----------~~~---~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~   68 (730)
                      +.+..++|+++|..++|||||+++|++....           .+.   .-.-|.+.......+.....++.++||||+.+
T Consensus         8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~   87 (396)
T PRK00049          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD   87 (396)
T ss_pred             CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence            3456799999999999999999999863110           000   00223334444445544446788999999988


Q ss_pred             hhhhhHhhhccccEEEEEeecCCCC
Q psy17467         69 FRSITQSYYRSAHALILVYDISCQP   93 (730)
Q Consensus        69 ~~sl~~~~~r~ADaIILVyDvtd~e   93 (730)
                      |.......+..+|++++|+|+++..
T Consensus        88 f~~~~~~~~~~aD~~llVVDa~~g~  112 (396)
T PRK00049         88 YVKNMITGAAQMDGAILVVSAADGP  112 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCC
Confidence            7665566678999999999998753

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.06  E-value=6e-10  Score=101.06  Aligned_cols=70  Identities=29%  Similarity=0.348  Sum_probs=54.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCC-CcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQG-ATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~-pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      +||+++|+.|||||+|+.|+....+...+. ++++                           +..+...+++.++++++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            589999999999999999998888765443 4443                           233345567889999999


Q ss_pred             eecCCCCchhhhHHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIE  106 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~  106 (730)
                      ||.++..|++.+  |...+.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~   71 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVL   71 (124)
T ss_pred             EEccCHHHHHHH--hHHHHH
Confidence            999999999776  776653

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.06  E-value=2.1e-09  Score=98.23  Aligned_cols=81  Identities=22%  Similarity=0.245  Sum_probs=56.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhh---------hhhhHhhhc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERF---------RSITQSYYR   78 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~---------~sl~~~~~r   78 (730)
                      ||+|+|.+|||||||+|++++... .....+..+.......+.+++..  +.++||||...-         .......+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            699999999999999999998543 23333444444445566677744  579999996321         111223348


Q ss_pred             cccEEEEEeecCC
Q psy17467         79 SAHALILVYDISC   91 (730)
Q Consensus        79 ~ADaIILVyDvtd   91 (730)
                      .+|++++|+|.++
T Consensus        79 ~~d~ii~vv~~~~   91 (116)
T PF01926_consen   79 KSDLIIYVVDASN   91 (116)
T ss_dssp             TESEEEEEEETTS
T ss_pred             HCCEEEEEEECCC
Confidence            8999999999776

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.05  E-value=1.5e-10  Score=115.91  Aligned_cols=117  Identities=27%  Similarity=0.400  Sum_probs=75.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEe-CCeEEEEEEEeCCCchhhhhhh-Hh--hhccccEEE
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEI-NNERIKLQIWDTAGQERFRSIT-QS--YYRSAHALI   84 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~v-dg~~v~LqLwDTpG~e~~~sl~-~~--~~r~ADaII   84 (730)
                      .|+++|++|+|||+|+.+|..+....+..+. ....   ...+ +...-.+.++|+||+.+.+... ..  +..++.+||
T Consensus         5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II   80 (181)
T PF09439_consen    5 TVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII   80 (181)
T ss_dssp             EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence            4899999999999999999999776665444 2111   2222 2233468999999999877633 33  588999999


Q ss_pred             EEeecCC-CCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467         85 LVYDISC-QPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE  157 (730)
Q Consensus        85 LVyDvtd-~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~  157 (730)
                      +|.|.+. ..++.++.+++.++.....                            ......|++|++||.|+..
T Consensus        81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~----------------------------~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   81 FVVDSSTDQKELRDVAEYLYDILSDTE----------------------------VQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             EEEETTTHHHHHHHHHHHHHHHHHHHH----------------------------CCTT--EEEEEEE-TTSTT
T ss_pred             EEEeCccchhhHHHHHHHHHHHHHhhh----------------------------hccCCCCEEEEEeCccccc
Confidence            9999863 4456666667777654431                            1235789999999999974

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.04  E-value=4.5e-09  Score=124.57  Aligned_cols=90  Identities=17%  Similarity=0.086  Sum_probs=66.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCC----CC--------------CCcceeeEEEEEEEeCCeEEEEEEEeCCCchh
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPP----GQ--------------GATIGVDFMIKTVEINNERIKLQIWDTAGQER   68 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~----~~--------------~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~   68 (730)
                      .-+|+|+|.+|+|||||+++|+...-..    ..              ...++.+.....+.+++  .++.+|||||+.+
T Consensus        10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG~~~   87 (689)
T TIGR00484        10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPGHVD   87 (689)
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCCCcc
Confidence            3589999999999999999997421100    00              12233344445555665  7899999999988


Q ss_pred             hhhhhHhhhccccEEEEEeecCCCCchhhh
Q psy17467         69 FRSITQSYYRSAHALILVYDISCQPTFDCL   98 (730)
Q Consensus        69 ~~sl~~~~~r~ADaIILVyDvtd~eSfe~L   98 (730)
                      +.......++.+|++|+|+|+++..+.+..
T Consensus        88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~~  117 (689)
T TIGR00484        88 FTVEVERSLRVLDGAVAVLDAVGGVQPQSE  117 (689)
T ss_pred             hhHHHHHHHHHhCEEEEEEeCCCCCChhHH
Confidence            877788889999999999999987665543

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.04  E-value=4e-09  Score=115.93  Aligned_cols=83  Identities=19%  Similarity=0.234  Sum_probs=63.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeE---------------EEEEEEeCCCchhhh--
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNER---------------IKLQIWDTAGQERFR--   70 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~---------------v~LqLwDTpG~e~~~--   70 (730)
                      ++|.+||.||||||||+|++++.......+|..+.++....+.+.+..               ..++++|+||...-.  
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            789999999999999999999988666666777777777777765521               358999999964321  


Q ss_pred             --hhhH---hhhccccEEEEEeecC
Q psy17467         71 --SITQ---SYYRSAHALILVYDIS   90 (730)
Q Consensus        71 --sl~~---~~~r~ADaIILVyDvt   90 (730)
                        .+..   ..++.||++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence              2222   2367999999999985

>COG2262 HflX GTPases [General function prediction only]

Probab=99.03  E-value=3.2e-09  Score=116.60  Aligned_cols=158  Identities=23%  Similarity=0.241  Sum_probs=109.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh--hhhH------hhhc
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR--SITQ------SYYR   78 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~--sl~~------~~~r   78 (730)
                      ...|+++|-.|+|||||+|++++........-..+.+...+.+.+.+ ...+-+-||-|=-+.-  .+..      .-..
T Consensus       192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~  270 (411)
T COG2262         192 IPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVK  270 (411)
T ss_pred             CCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHhh
Confidence            35799999999999999999998777666666777778888888875 3567889998832211  1112      2255


Q ss_pred             cccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchh
Q psy17467         79 SAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDED  158 (730)
Q Consensus        79 ~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~  158 (730)
                      .||+++.|.|++++...+.+.                          .+.+++.+.+.     ...|+++|.||+|+..+
T Consensus       271 ~aDlllhVVDaSdp~~~~~~~--------------------------~v~~vL~el~~-----~~~p~i~v~NKiD~~~~  319 (411)
T COG2262         271 EADLLLHVVDASDPEILEKLE--------------------------AVEDVLAEIGA-----DEIPIILVLNKIDLLED  319 (411)
T ss_pred             cCCEEEEEeecCChhHHHHHH--------------------------HHHHHHHHcCC-----CCCCEEEEEecccccCc
Confidence            899999999999984333332                          22344444444     34788888888887543


Q ss_pred             hHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCCh
Q psy17467        159 EHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNV  238 (730)
Q Consensus       159 e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GV  238 (730)
                      +.                                                      ....+..... ..+.+||++|.|+
T Consensus       320 ~~------------------------------------------------------~~~~~~~~~~-~~v~iSA~~~~gl  344 (411)
T COG2262         320 EE------------------------------------------------------ILAELERGSP-NPVFISAKTGEGL  344 (411)
T ss_pred             hh------------------------------------------------------hhhhhhhcCC-CeEEEEeccCcCH
Confidence            21                                                      0111111112 4799999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy17467        239 EKLFMQIAAELME  251 (730)
Q Consensus       239 eeLFe~Li~~l~e  251 (730)
                      +.+.+.|.+.+..
T Consensus       345 ~~L~~~i~~~l~~  357 (411)
T COG2262         345 DLLRERIIELLSG  357 (411)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999988843

>KOG0077|consensus

Probab=99.03  E-value=6.6e-10  Score=108.74  Aligned_cols=115  Identities=17%  Similarity=0.244  Sum_probs=91.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .=|++++|..|+|||||++.+.+.+. ..+.||.-  +.+..+.+.+  +.++.+|.+|+..-+..|..|+..+|++++.
T Consensus        20 ~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlH--PTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l   94 (193)
T KOG0077|consen   20 FGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLH--PTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL   94 (193)
T ss_pred             CceEEEEeecCCchhhHHHHHccccc-cccCCCcC--CChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence            35899999999999999999986543 23334442  3334666777  7899999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD  156 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~  156 (730)
                      +|+-|.+-|...+..++.+....                              .-.+.|+++.|||+|..
T Consensus        95 vda~d~er~~es~~eld~ll~~e------------------------------~la~vp~lilgnKId~p  134 (193)
T KOG0077|consen   95 VDAYDQERFAESKKELDALLSDE------------------------------SLATVPFLILGNKIDIP  134 (193)
T ss_pred             eehhhHHHhHHHHHHHHHHHhHH------------------------------HHhcCcceeecccccCC
Confidence            99999999988887766654432                              11578889999999985

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.03  E-value=1.8e-09  Score=126.80  Aligned_cols=87  Identities=20%  Similarity=0.210  Sum_probs=59.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCC---------------------------------CCcceeeEEEEEEEe
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQ---------------------------------GATIGVDFMIKTVEI   51 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~---------------------------------~pTig~d~~~~~i~v   51 (730)
                      ...++|+++|.+++|||||+++++...-....                                 ...++.+.....+..
T Consensus        22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~  101 (632)
T PRK05506         22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT  101 (632)
T ss_pred             CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence            34589999999999999999999863221110                                 001111222223333


Q ss_pred             CCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCC
Q psy17467         52 NNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQP   93 (730)
Q Consensus        52 dg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~e   93 (730)
                      ++  ..+.|+||||+++|.......+..+|++|+|+|+++..
T Consensus       102 ~~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~  141 (632)
T PRK05506        102 PK--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGV  141 (632)
T ss_pred             CC--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCc
Confidence            33  56889999999887655555678999999999997653

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.00  E-value=6.3e-09  Score=108.15  Aligned_cols=165  Identities=19%  Similarity=0.236  Sum_probs=99.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccee--eEEEEEEEeCCeEEEEEEEeCCCchhhhh-----hhHhhhcccc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGV--DFMIKTVEINNERIKLQIWDTAGQERFRS-----ITQSYYRSAH   81 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~--d~~~~~i~vdg~~v~LqLwDTpG~e~~~s-----l~~~~~r~AD   81 (730)
                      ||+++|++++||||+.+-+..+..+... ..+|.  +.....+...+ .+.+++||.||+..+..     .....+++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT-~~L~~T~~ve~~~v~~~~-~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~   78 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDT-LRLEPTIDVEKSHVRFLS-FLPLNIWDCPGQDDFMENYFNSQREEIFSNVG   78 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGG-GG-----SEEEEEEECTT-SCEEEEEEE-SSCSTTHTTHTCCHHHHHCTES
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhc-cccCCcCCceEEEEecCC-CcEEEEEEcCCccccccccccccHHHHHhccC
Confidence            7999999999999999888765433221 22222  22233333232 36899999999975433     3467789999


Q ss_pred             EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467         82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV  161 (730)
Q Consensus        82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~  161 (730)
                      ++|+|+|+.+.+-.+++..+..-+....                             ..+|++.+.+...|+|+..++..
T Consensus        79 ~LIyV~D~qs~~~~~~l~~~~~~i~~l~-----------------------------~~sp~~~v~vfiHK~D~l~~~~r  129 (232)
T PF04670_consen   79 VLIYVFDAQSDDYDEDLAYLSDCIEALR-----------------------------QYSPNIKVFVFIHKMDLLSEDER  129 (232)
T ss_dssp             EEEEEEETT-STCHHHHHHHHHHHHHHH-----------------------------HHSTT-EEEEEEE-CCCS-HHHH
T ss_pred             EEEEEEEcccccHHHHHHHHHHHHHHHH-----------------------------HhCCCCeEEEEEeecccCCHHHH
Confidence            9999999996654445443333332211                             13478888899999999865543


Q ss_pred             HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC---CeEEEEecCCCCCh
Q psy17467        162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD---MYYLETSAKASDNV  238 (730)
Q Consensus       162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg---~~fvEtSAktG~GV  238 (730)
                      ...+.                                            -..+...+.+...+   +.|+.||-.. +.+
T Consensus       130 ~~~~~--------------------------------------------~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sl  164 (232)
T PF04670_consen  130 EEIFR--------------------------------------------DIQQRIRDELEDLGIEDITFFLTSIWD-ESL  164 (232)
T ss_dssp             HHHHH--------------------------------------------HHHHHHHHHHHHTT-TSEEEEEE-TTS-THH
T ss_pred             HHHHH--------------------------------------------HHHHHHHHHhhhccccceEEEeccCcC-cHH
Confidence            22110                                            01233444455555   7889998876 578


Q ss_pred             HHHHHHHHHHH
Q psy17467        239 EKLFMQIAAEL  249 (730)
Q Consensus       239 eeLFe~Li~~l  249 (730)
                      -++|..++..+
T Consensus       165 y~A~S~Ivq~L  175 (232)
T PF04670_consen  165 YEAWSKIVQKL  175 (232)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHH
Confidence            88888887766

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=98.99  E-value=1.8e-09  Score=116.25  Aligned_cols=165  Identities=19%  Similarity=0.176  Sum_probs=112.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh----hhHhh---hcccc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS----ITQSY---YRSAH   81 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s----l~~~~---~r~AD   81 (730)
                      .|-+||.||+|||||++.+...+.....+|.++..+.-..+.+.+ .-.+.+=|+||..+-.+    +...+   +..+.
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~  239 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIERTR  239 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence            467999999999999999999988888788888777777777632 34588999998754333    23333   66899


Q ss_pred             EEEEEeecCCCCc---hhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchh
Q psy17467         82 ALILVYDISCQPT---FDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDED  158 (730)
Q Consensus        82 aIILVyDvtd~eS---fe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~  158 (730)
                      +++.|+|++..+-   .++......++..+..                             .-.+.|.+||.||+|+..+
T Consensus       240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~-----------------------------~L~~K~~ivv~NKiD~~~~  290 (369)
T COG0536         240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSP-----------------------------KLAEKPRIVVLNKIDLPLD  290 (369)
T ss_pred             eeEEEEecCcccCCCHHHHHHHHHHHHHHhhH-----------------------------HhccCceEEEEeccCCCcC
Confidence            9999999986554   5565656666655531                             1134566667777774321


Q ss_pred             hHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCe-EEEEecCCCCC
Q psy17467        159 EHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMY-YLETSAKASDN  237 (730)
Q Consensus       159 e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~-fvEtSAktG~G  237 (730)
                      ++                                                  --.+....+.+..+.. ++.+||.+++|
T Consensus       291 ~e--------------------------------------------------~~~~~~~~l~~~~~~~~~~~ISa~t~~g  320 (369)
T COG0536         291 EE--------------------------------------------------ELEELKKALAEALGWEVFYLISALTREG  320 (369)
T ss_pred             HH--------------------------------------------------HHHHHHHHHHHhcCCCcceeeehhcccC
Confidence            11                                                  0112233344444433 22299999999


Q ss_pred             hHHHHHHHHHHHHHHH
Q psy17467        238 VEKLFMQIAAELMEKL  253 (730)
Q Consensus       238 VeeLFe~Li~~l~e~~  253 (730)
                      ++++...+.+.+.+..
T Consensus       321 ~~~L~~~~~~~l~~~~  336 (369)
T COG0536         321 LDELLRALAELLEETK  336 (369)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999998886554

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=3.8e-09  Score=119.12  Aligned_cols=156  Identities=18%  Similarity=0.247  Sum_probs=108.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCC-eEEEEEEEeCCCchhhhhhhHhhhccccEEEEEee
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINN-ERIKLQIWDTAGQERFRSITQSYYRSAHALILVYD   88 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg-~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyD   88 (730)
                      |+++|.-..|||||+..+-.......-.-.++.......+..+. ..-.+.|+||||++.|..++..-..-+|++|||.|
T Consensus         8 VtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa   87 (509)
T COG0532           8 VTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVA   87 (509)
T ss_pred             EEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEE
Confidence            89999999999999999988776554434444344444555541 22468999999999999999888888999999999


Q ss_pred             cCC---CCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         89 ISC---QPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        89 vtd---~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      ++|   +++.+.+.       +.                               -..+.|++++.||+|..+......  
T Consensus        88 ~dDGv~pQTiEAI~-------ha-------------------------------k~a~vP~iVAiNKiDk~~~np~~v--  127 (509)
T COG0532          88 ADDGVMPQTIEAIN-------HA-------------------------------KAAGVPIVVAINKIDKPEANPDKV--  127 (509)
T ss_pred             ccCCcchhHHHHHH-------HH-------------------------------HHCCCCEEEEEecccCCCCCHHHH--
Confidence            998   44444432       11                               126789999999999974321100  


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC--CeEEEEecCCCCChHHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD--MYYLETSAKASDNVEKLFM  243 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg--~~fvEtSAktG~GVeeLFe  243 (730)
                                                           +.++.+..+.       +..+|  ..|+++||++|+|+++|.+
T Consensus       128 -------------------------------------~~el~~~gl~-------~E~~gg~v~~VpvSA~tg~Gi~eLL~  163 (509)
T COG0532         128 -------------------------------------KQELQEYGLV-------PEEWGGDVIFVPVSAKTGEGIDELLE  163 (509)
T ss_pred             -------------------------------------HHHHHHcCCC-------HhhcCCceEEEEeeccCCCCHHHHHH
Confidence                                                 0011100111       11222  5799999999999999999


Q ss_pred             HHHHHH
Q psy17467        244 QIAAEL  249 (730)
Q Consensus       244 ~Li~~l  249 (730)
                      .+.-..
T Consensus       164 ~ill~a  169 (509)
T COG0532         164 LILLLA  169 (509)
T ss_pred             HHHHHH
Confidence            887554

>PLN03127 Elongation factor Tu; Provisional

Probab=98.98  E-value=1.9e-08  Score=113.75  Aligned_cols=87  Identities=20%  Similarity=0.154  Sum_probs=60.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcC------CCC----------CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQG------VFP----------PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER   68 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~------~f~----------~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~   68 (730)
                      +..++|+++|..++|||||+++|++.      ...          ....+.+  +.......+.....++.++||||+.+
T Consensus        59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGi--Ti~~~~~~~~~~~~~i~~iDtPGh~~  136 (447)
T PLN03127         59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGI--TIATAHVEYETAKRHYAHVDCPGHAD  136 (447)
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCc--eeeeeEEEEcCCCeEEEEEECCCccc
Confidence            45689999999999999999999732      110          0111233  33344445544456789999999987


Q ss_pred             hhhhhHhhhccccEEEEEeecCCCC
Q psy17467         69 FRSITQSYYRSAHALILVYDISCQP   93 (730)
Q Consensus        69 ~~sl~~~~~r~ADaIILVyDvtd~e   93 (730)
                      |..........+|++++|+|+++..
T Consensus       137 f~~~~~~g~~~aD~allVVda~~g~  161 (447)
T PLN03127        137 YVKNMITGAAQMDGGILVVSAPDGP  161 (447)
T ss_pred             hHHHHHHHHhhCCEEEEEEECCCCC
Confidence            7654445566799999999988653

>KOG3905|consensus

Probab=98.97  E-value=1.2e-08  Score=108.78  Aligned_cols=207  Identities=16%  Similarity=0.161  Sum_probs=136.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEE--eCCeEEEEEEEeCCCchhhhhhhHhhhccc----cE
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVE--INNERIKLQIWDTAGQERFRSITQSYYRSA----HA   82 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~--vdg~~v~LqLwDTpG~e~~~sl~~~~~r~A----Da   82 (730)
                      +|+|+|+.++|||||+.++.+.+   .+.+..|.+|....+.  ..+...++.+|-+.|.-....+....+...    -.
T Consensus        54 ~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl  130 (473)
T KOG3905|consen   54 NVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL  130 (473)
T ss_pred             eEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence            69999999999999999998866   3334444444443333  334456789999988766666555443322    37


Q ss_pred             EEEEeecCCCCc-hhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHH------Hhhhc----ccccCCCCCceEEecc
Q psy17467         83 LILVYDISCQPT-FDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEM------ASAAG----LLCTVDPALATALASD  151 (730)
Q Consensus        83 IILVyDvtd~eS-fe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i------~~~~g----~~~~~~~~~PVVLVGN  151 (730)
                      +||+.|++++-. ++.++.|..-+.++...-.        .+-+..++.      .|+..    -.+..+|...--++++
T Consensus       131 viltasms~Pw~~lesLqkWa~Vl~ehidkl~--------i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~  202 (473)
T KOG3905|consen  131 VILTASMSNPWTLLESLQKWASVLREHIDKLK--------IPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGS  202 (473)
T ss_pred             EEEEEecCCcHHHHHHHHHHHHHHHHHHHhcc--------CCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccC
Confidence            899999999954 5788999988877653210        111222221      12222    2233334444345555


Q ss_pred             CCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCcccccccccccc----C-CCCC-------hHHHHHH
Q psy17467        152 KTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDRE----D-REIP-------TEVGEDF  219 (730)
Q Consensus       152 K~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~----~-R~Vs-------~ee~~~l  219 (730)
                      -.|-.                       ...+.-+..+..+...|+++|.+|||.-    . ....       ....++|
T Consensus       203 ~~de~-----------------------~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkF  259 (473)
T KOG3905|consen  203 SADEH-----------------------VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKF  259 (473)
T ss_pred             ccccc-----------------------cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHH
Confidence            44432                       1223345566778899999999999982    1 1111       1246888


Q ss_pred             HHhcCCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467        220 AKRHDMYYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       220 ak~lg~~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                      |-.+|+..+.+|+|+..||+-++..|++.+
T Consensus       260 CLr~GaaLiyTSvKE~KNidllyKYivhr~  289 (473)
T KOG3905|consen  260 CLRYGAALIYTSVKETKNIDLLYKYIVHRS  289 (473)
T ss_pred             HHHcCceeEEeecccccchHHHHHHHHHHh
Confidence            999999999999999999999999999876

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=98.97  E-value=1.4e-08  Score=114.68  Aligned_cols=92  Identities=17%  Similarity=0.182  Sum_probs=64.6

Q ss_pred             CCCCcceeEEEEEcCCCCCHHHHHHHHHcC--CCC------------------------CCCC---CcceeeEEEEEEEe
Q psy17467          1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQG--VFP------------------------PGQG---ATIGVDFMIKTVEI   51 (730)
Q Consensus         1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~--~f~------------------------~~~~---pTig~d~~~~~i~v   51 (730)
                      |...+..++|+++|..++|||||+.+|+..  ...                        .+..   -.-|.+.......+
T Consensus         1 ~~~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~   80 (446)
T PTZ00141          1 MGKEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF   80 (446)
T ss_pred             CCCCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEE
Confidence            455667799999999999999999998751  100                        0000   01122222333334


Q ss_pred             CCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCC
Q psy17467         52 NNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQ   92 (730)
Q Consensus        52 dg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~   92 (730)
                      ......+.|+||||+.+|..........+|++|+|+|+++.
T Consensus        81 ~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G  121 (446)
T PTZ00141         81 ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAG  121 (446)
T ss_pred             ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCC
Confidence            44457899999999999877667778899999999999864

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=98.95  E-value=1.2e-08  Score=102.19  Aligned_cols=82  Identities=17%  Similarity=0.249  Sum_probs=55.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCC--CCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh----hh-------H
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQ--GATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS----IT-------Q   74 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~--~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s----l~-------~   74 (730)
                      ++|+++|.+|||||||+|.+++.......  .+..+.+.......+++  ..+.++||||..+...    +.       .
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            47999999999999999999987543222  12223333344445566  5789999999643211    11       1


Q ss_pred             hhhccccEEEEEeecCC
Q psy17467         75 SYYRSAHALILVYDISC   91 (730)
Q Consensus        75 ~~~r~ADaIILVyDvtd   91 (730)
                      ....++|++|+|.|+.+
T Consensus        79 ~~~~g~~~illVi~~~~   95 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR   95 (196)
T ss_pred             hcCCCCEEEEEEEECCC
Confidence            22457899999999876

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PRK12739 elongation factor G; Reviewed

Probab=98.94  E-value=2.3e-08  Score=118.63  Aligned_cols=89  Identities=17%  Similarity=0.121  Sum_probs=66.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcC--CC------CC----------CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCch
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQG--VF------PP----------GQGATIGVDFMIKTVEINNERIKLQIWDTAGQE   67 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~--~f------~~----------~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e   67 (730)
                      ...+|+|+|.+++|||||+++|+..  ..      ..          .....++.+.....+.+++  .++.++||||+.
T Consensus         7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~   84 (691)
T PRK12739          7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGHV   84 (691)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCHH
Confidence            4568999999999999999999742  10      00          0122344444455566665  779999999998


Q ss_pred             hhhhhhHhhhccccEEEEEeecCCCCchh
Q psy17467         68 RFRSITQSYYRSAHALILVYDISCQPTFD   96 (730)
Q Consensus        68 ~~~sl~~~~~r~ADaIILVyDvtd~eSfe   96 (730)
                      ++...+...++.+|++|+|+|+++...-+
T Consensus        85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~q  113 (691)
T PRK12739         85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQ  113 (691)
T ss_pred             HHHHHHHHHHHHhCeEEEEEeCCCCCCHH
Confidence            88777888899999999999998765443

>KOG0462|consensus

Probab=98.92  E-value=5.9e-09  Score=117.27  Aligned_cols=156  Identities=19%  Similarity=0.178  Sum_probs=107.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCC-CCC--------------CCCcceeeEEEEEEEe-CCeEEEEEEEeCCCchhh
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVF-PPG--------------QGATIGVDFMIKTVEI-NNERIKLQIWDTAGQERF   69 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f-~~~--------------~~pTig~d~~~~~i~v-dg~~v~LqLwDTpG~e~~   69 (730)
                      ..=++.||-.-.-|||||..|++...- ...              -...+++--....+.+ +|+.+.++++||||+-+|
T Consensus        59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF  138 (650)
T KOG0462|consen   59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF  138 (650)
T ss_pred             hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence            334688999899999999999974211 110              1122222222223333 467899999999999999


Q ss_pred             hhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEe
Q psy17467         70 RSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALA  149 (730)
Q Consensus        70 ~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLV  149 (730)
                      ..-....+.-||++|||.|++....-+.+..++..+.                                   .+..+|.|
T Consensus       139 s~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----------------------------------~~L~iIpV  183 (650)
T KOG0462|consen  139 SGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----------------------------------AGLAIIPV  183 (650)
T ss_pred             cceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----------------------------------cCCeEEEe
Confidence            9888888999999999999998777666655444432                                   45566777


Q ss_pred             ccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHH----HHHHHhcCC
Q psy17467        150 SDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVG----EDFAKRHDM  225 (730)
Q Consensus       150 GNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~----~~lak~lg~  225 (730)
                      .||+|+...                                                     ..++.    .++....+.
T Consensus       184 lNKIDlp~a-----------------------------------------------------dpe~V~~q~~~lF~~~~~  210 (650)
T KOG0462|consen  184 LNKIDLPSA-----------------------------------------------------DPERVENQLFELFDIPPA  210 (650)
T ss_pred             eeccCCCCC-----------------------------------------------------CHHHHHHHHHHHhcCCcc
Confidence            777777421                                                     11222    222222344


Q ss_pred             eEEEEecCCCCChHHHHHHHHHHH
Q psy17467        226 YYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       226 ~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                      +.+.+|||+|.|+++++++|++.+
T Consensus       211 ~~i~vSAK~G~~v~~lL~AII~rV  234 (650)
T KOG0462|consen  211 EVIYVSAKTGLNVEELLEAIIRRV  234 (650)
T ss_pred             ceEEEEeccCccHHHHHHHHHhhC
Confidence            789999999999999999999876

>PRK12740 elongation factor G; Reviewed

Probab=98.91  E-value=1.2e-08  Score=120.54  Aligned_cols=85  Identities=21%  Similarity=0.191  Sum_probs=61.4

Q ss_pred             EcCCCCCHHHHHHHHHcCCCC--------C-----C-----CCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhH
Q psy17467         13 VGNAGVGKTCLVRRFTQGVFP--------P-----G-----QGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQ   74 (730)
Q Consensus        13 LG~pnVGKSSLLnrLl~~~f~--------~-----~-----~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~   74 (730)
                      +|.+|+|||||+++|+...-.        .     +     ....++.......+.+++  +.+.+|||||+.++...+.
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence            699999999999999642110        0     0     012233334444555655  7899999999988877788


Q ss_pred             hhhccccEEEEEeecCCCCchhhhH
Q psy17467         75 SYYRSAHALILVYDISCQPTFDCLT   99 (730)
Q Consensus        75 ~~~r~ADaIILVyDvtd~eSfe~L~   99 (730)
                      .+++.+|++|+|+|.++..+.+...
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~~  103 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTET  103 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHHH
Confidence            8899999999999999876665443

>PRK00007 elongation factor G; Reviewed

Probab=98.90  E-value=3.6e-08  Score=117.10  Aligned_cols=90  Identities=19%  Similarity=0.169  Sum_probs=64.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHc--CCCC-C---C------------CCCcceeeEEEEEEEeCCeEEEEEEEeCCCch
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQ--GVFP-P---G------------QGATIGVDFMIKTVEINNERIKLQIWDTAGQE   67 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~--~~f~-~---~------------~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e   67 (730)
                      ...+|+|+|.+|+|||||+++|+.  +... .   .            ....++.+.....+.+++  ..+.++||||+.
T Consensus         9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~~   86 (693)
T PRK00007          9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGHV   86 (693)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCcH
Confidence            356999999999999999999973  2110 0   0            122344444445555655  789999999998


Q ss_pred             hhhhhhHhhhccccEEEEEeecCCCCchhh
Q psy17467         68 RFRSITQSYYRSAHALILVYDISCQPTFDC   97 (730)
Q Consensus        68 ~~~sl~~~~~r~ADaIILVyDvtd~eSfe~   97 (730)
                      ++..-....++.+|++|+|+|++...+-+.
T Consensus        87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt  116 (693)
T PRK00007         87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQS  116 (693)
T ss_pred             HHHHHHHHHHHHcCEEEEEEECCCCcchhh
Confidence            876666677889999999999887655544

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.89  E-value=6.1e-09  Score=124.06  Aligned_cols=96  Identities=22%  Similarity=0.223  Sum_probs=69.9

Q ss_pred             CCCCcceeEEEEEcCCCCCHHHHHHHHHcC---------------CCCCC---CCCcceeeEEEEEEEeCCeEEEEEEEe
Q psy17467          1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQG---------------VFPPG---QGATIGVDFMIKTVEINNERIKLQIWD   62 (730)
Q Consensus         1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~---------------~f~~~---~~pTig~d~~~~~i~vdg~~v~LqLwD   62 (730)
                      |+..+...+|+|+|..++|||||+++|+..               .+...   ...|+........+.+++..+.+.+||
T Consensus        13 ~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liD   92 (720)
T TIGR00490        13 MWKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLID   92 (720)
T ss_pred             hhCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEe
Confidence            455566789999999999999999999742               11111   112333223333344566679999999


Q ss_pred             CCCchhhhhhhHhhhccccEEEEEeecCCCCchh
Q psy17467         63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFD   96 (730)
Q Consensus        63 TpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe   96 (730)
                      |||+.+|.......++.+|++|+|+|+.+....+
T Consensus        93 TPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~  126 (720)
T TIGR00490        93 TPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQ  126 (720)
T ss_pred             CCCccccHHHHHHHHHhcCEEEEEEecCCCCCcc
Confidence            9999988877788899999999999998754333

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.86  E-value=5e-09  Score=109.47  Aligned_cols=96  Identities=20%  Similarity=0.280  Sum_probs=74.9

Q ss_pred             hhhhhhhHhhhccccEEEEEeecCCCC-chhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCc
Q psy17467         67 ERFRSITQSYYRSAHALILVYDISCQP-TFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALA  145 (730)
Q Consensus        67 e~~~sl~~~~~r~ADaIILVyDvtd~e-Sfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~P  145 (730)
                      +++..+.+.+++++|++++|||++++. ||+.+.+|+..+..                                  .++|
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----------------------------------~~i~   69 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----------------------------------QNIE   69 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----------------------------------CCCC
Confidence            567777888999999999999999887 89999999876532                                  4577


Q ss_pred             eEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC
Q psy17467        146 TALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM  225 (730)
Q Consensus       146 VVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~  225 (730)
                      +++|+||+||.++.                                                  .+..+.++.++ ..|+
T Consensus        70 ~vIV~NK~DL~~~~--------------------------------------------------~~~~~~~~~~~-~~g~   98 (245)
T TIGR00157        70 PIIVLNKIDLLDDE--------------------------------------------------DMEKEQLDIYR-NIGY   98 (245)
T ss_pred             EEEEEECcccCCCH--------------------------------------------------HHHHHHHHHHH-HCCC
Confidence            88888988885321                                                  22223444444 4789


Q ss_pred             eEEEEecCCCCChHHHHHHHHH
Q psy17467        226 YYLETSAKASDNVEKLFMQIAA  247 (730)
Q Consensus       226 ~fvEtSAktG~GVeeLFe~Li~  247 (730)
                      .++++||++|.||+++|+.+.+
T Consensus        99 ~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        99 QVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             eEEEEecCCchhHHHHHhhhcC
Confidence            9999999999999999998764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=98.83  E-value=2.8e-08  Score=110.44  Aligned_cols=156  Identities=18%  Similarity=0.208  Sum_probs=107.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCC---------------CCCCCcceeeEEEEEEEe---CCeEEEEEEEeCCCchh
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFP---------------PGQGATIGVDFMIKTVEI---NNERIKLQIWDTAGQER   68 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~---------------~~~~pTig~d~~~~~i~v---dg~~v~LqLwDTpG~e~   68 (730)
                      .=+..|+-.-.-|||||..|++...-.               ..-...+++-.....+.+   +|+.+.++++||||+-+
T Consensus         9 IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVD   88 (603)
T COG0481           9 IRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   88 (603)
T ss_pred             ccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccc
Confidence            346788888899999999999752111               111122333333334444   56889999999999999


Q ss_pred             hhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEE
Q psy17467         69 FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATAL  148 (730)
Q Consensus        69 ~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVL  148 (730)
                      |.--....+..|.+.+||.|++..-.-+.+...+..+.+                                   +.-++-
T Consensus        89 FsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~-----------------------------------~LeIiP  133 (603)
T COG0481          89 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----------------------------------NLEIIP  133 (603)
T ss_pred             eEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc-----------------------------------CcEEEE
Confidence            887777788899999999999998777777766655543                                   223344


Q ss_pred             eccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC---
Q psy17467        149 ASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM---  225 (730)
Q Consensus       149 VGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~---  225 (730)
                      |.||+||.                                                   ... ...-.++....+|+   
T Consensus       134 ViNKIDLP---------------------------------------------------~Ad-pervk~eIe~~iGid~~  161 (603)
T COG0481         134 VLNKIDLP---------------------------------------------------AAD-PERVKQEIEDIIGIDAS  161 (603)
T ss_pred             eeecccCC---------------------------------------------------CCC-HHHHHHHHHHHhCCCcc
Confidence            44555553                                                   211 12233445555676   


Q ss_pred             eEEEEecCCCCChHHHHHHHHHHH
Q psy17467        226 YYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       226 ~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                      ..+.||||+|.||+++++.|++.+
T Consensus       162 dav~~SAKtG~gI~~iLe~Iv~~i  185 (603)
T COG0481         162 DAVLVSAKTGIGIEDVLEAIVEKI  185 (603)
T ss_pred             hheeEecccCCCHHHHHHHHHhhC
Confidence            389999999999999999999877

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=98.81  E-value=6.9e-08  Score=109.53  Aligned_cols=88  Identities=10%  Similarity=0.086  Sum_probs=56.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCCc----ceeeEEE-----------EEEEeC-C------------
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVF---PPGQGAT----IGVDFMI-----------KTVEIN-N------------   53 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f---~~~~~pT----ig~d~~~-----------~~i~vd-g------------   53 (730)
                      ...++|.++|.-..|||||+..|++..-   ...-...    +|.....           ....+. +            
T Consensus        32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (460)
T PTZ00327         32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH  111 (460)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence            4568999999999999999999996321   1111111    1111000           000000 0            


Q ss_pred             ---eEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCC
Q psy17467         54 ---ERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQ   92 (730)
Q Consensus        54 ---~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~   92 (730)
                         ....+.|+|+||+++|..-.......+|++++|+|+++.
T Consensus       112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g  153 (460)
T PTZ00327        112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANES  153 (460)
T ss_pred             cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence               023689999999998876555667789999999999874

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=98.81  E-value=8e-08  Score=109.11  Aligned_cols=215  Identities=15%  Similarity=0.202  Sum_probs=129.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeC--CeEEEEEEEeCCCchhhhhhhHhhhcc----cc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN--NERIKLQIWDTAGQERFRSITQSYYRS----AH   81 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vd--g~~v~LqLwDTpG~e~~~sl~~~~~r~----AD   81 (730)
                      -.|+|+|+.++|||||+.+|.+.+   .+.++.+.+|....+.-+  +....+.+|-+.|...+..+.+..+..    --
T Consensus        26 k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t  102 (472)
T PF05783_consen   26 KSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT  102 (472)
T ss_pred             ceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence            369999999999999999987543   344666666655544332  334678999998876666666544432    24


Q ss_pred             EEEEEeecCCCCch-hhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhh---cccccCC-CCCceEEeccCCCcc
Q psy17467         82 ALILVYDISCQPTF-DCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAA---GLLCTVD-PALATALASDKTDLD  156 (730)
Q Consensus        82 aIILVyDvtd~eSf-e~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~---g~~~~~~-~~~PVVLVGNK~DL~  156 (730)
                      +||+|.|.+.|-.+ +.+..|+.-+..+... .   -+....-.+..+++....   .-..... +..|..-. +...-.
T Consensus       103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~-L---~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~-~~~~~~  177 (472)
T PF05783_consen  103 LVVIVLDLSKPWNIMESLEKWLSVLREHIEK-L---KSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRS-PSSSSS  177 (472)
T ss_pred             EEEEEecCCChHHHHHHHHHHHHHHHHHHHH-h---hccHHHHHHHHHHHHHHHHHhhhccccccccCccccc-cccccc
Confidence            89999999999876 6888899887776531 0   000000001111222211   1111000 11111000 000000


Q ss_pred             hhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccC---CC--CCh-------HHHHHHHHhcC
Q psy17467        157 EDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDRED---RE--IPT-------EVGEDFAKRHD  224 (730)
Q Consensus       157 ~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~---R~--Vs~-------ee~~~lak~lg  224 (730)
                      +++                   ....+....+...+...|++||.+|+|.-.   +.  ...       ...+.+|-.+|
T Consensus       178 ~~~-------------------~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yG  238 (472)
T PF05783_consen  178 DDE-------------------SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYG  238 (472)
T ss_pred             ccc-------------------cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcC
Confidence            000                   011122334556677899999999999631   11  111       22677888999


Q ss_pred             CeEEEEecCCCCChHHHHHHHHHHH
Q psy17467        225 MYYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       225 ~~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                      +.++.||++...|++.++..|.+.+
T Consensus       239 AsL~yts~~~~~n~~~L~~yi~h~l  263 (472)
T PF05783_consen  239 ASLIYTSVKEEKNLDLLYKYILHRL  263 (472)
T ss_pred             CeEEEeeccccccHHHHHHHHHHHh
Confidence            9999999999999999999988776

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>cd00066 G-alpha G protein alpha subunit

Probab=98.80  E-value=1.1e-07  Score=102.99  Aligned_cols=134  Identities=17%  Similarity=0.218  Sum_probs=86.7

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCC----------chhhhHHHHHHHHHHhcccceEEEEeccCch
Q psy17467         55 RIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQP----------TFDCLTDWLREIEEYASFKVLRVLVGGTSGL  124 (730)
Q Consensus        55 ~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~e----------Sfe~L~~wleeI~~~~~~~~piVLVg~k~dl  124 (730)
                      .+.+.+||++|+...+..|..++.++++||+|+|+++-.          .+++....++.+...                
T Consensus       160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~----------------  223 (317)
T cd00066         160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNS----------------  223 (317)
T ss_pred             ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhC----------------
Confidence            377899999999999999999999999999999998742          122222223332211                


Q ss_pred             hhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccc
Q psy17467        125 KIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKI  204 (730)
Q Consensus       125 ~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~  204 (730)
                               .     .-.+.|++|++||.|+....     +....+..|+|...+.+                       
T Consensus       224 ---------~-----~~~~~pill~~NK~D~f~~k-----i~~~~l~~~fp~y~g~~-----------------------  261 (317)
T cd00066         224 ---------R-----WFANTSIILFLNKKDLFEEK-----IKKSPLTDYFPDYTGPP-----------------------  261 (317)
T ss_pred             ---------c-----cccCCCEEEEccChHHHHHh-----hcCCCccccCCCCCCCC-----------------------
Confidence                     1     11578999999999987532     11112344555553220                       


Q ss_pred             cccCCCCChHHHHHHHH----------hcCCeEEEEecCCCCChHHHHHHHHHHHHHH
Q psy17467        205 DREDREIPTEVGEDFAK----------RHDMYYLETSAKASDNVEKLFMQIAAELMEK  252 (730)
Q Consensus       205 DL~~R~Vs~ee~~~lak----------~lg~~fvEtSAktG~GVeeLFe~Li~~l~e~  252 (730)
                            -+.+.+..+..          ...+..+.++|..-.++..+|+.+.+.++..
T Consensus       262 ------~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~  313 (317)
T cd00066         262 ------NDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN  313 (317)
T ss_pred             ------CCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence                  11222222211          1234567789999999999999998888654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PRK14845 translation initiation factor IF-2; Provisional

Probab=98.78  E-value=4.3e-08  Score=119.77  Aligned_cols=75  Identities=23%  Similarity=0.240  Sum_probs=52.1

Q ss_pred             CCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe-----------EE-----EEEEEeCCCchhhhhhhHhhhcccc
Q psy17467         18 VGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE-----------RI-----KLQIWDTAGQERFRSITQSYYRSAH   81 (730)
Q Consensus        18 VGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~-----------~v-----~LqLwDTpG~e~~~sl~~~~~r~AD   81 (730)
                      |+||||+.++.+......-.-.++.......++++..           ..     .+.||||||++.|..+....+..+|
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            3599999999987664433233332222333333310           01     2899999999999888888888999


Q ss_pred             EEEEEeecCCC
Q psy17467         82 ALILVYDISCQ   92 (730)
Q Consensus        82 aIILVyDvtd~   92 (730)
                      ++++|+|+++.
T Consensus       552 ivlLVVDa~~G  562 (1049)
T PRK14845        552 LAVLVVDINEG  562 (1049)
T ss_pred             EEEEEEECccc
Confidence            99999999873

>cd01900 YchF YchF subfamily

Probab=98.77  E-value=8.3e-08  Score=102.16  Aligned_cols=81  Identities=20%  Similarity=0.208  Sum_probs=62.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe---------------EEEEEEEeCCCchhhh----
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE---------------RIKLQIWDTAGQERFR----   70 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~---------------~v~LqLwDTpG~e~~~----   70 (730)
                      |++||.||||||||+|++++.......+|..+.++....+.+.+.               ...++++|+||..+-.    
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            579999999999999999998887766788777777777777653               2359999999964321    


Q ss_pred             hhhH---hhhccccEEEEEeecC
Q psy17467         71 SITQ---SYYRSAHALILVYDIS   90 (730)
Q Consensus        71 sl~~---~~~r~ADaIILVyDvt   90 (730)
                      .+..   ..++.+|++++|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            2222   3367899999999974

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG1145|consensus

Probab=98.77  E-value=6.2e-08  Score=109.21  Aligned_cols=107  Identities=19%  Similarity=0.287  Sum_probs=78.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEe-CCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEee
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEI-NNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYD   88 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~v-dg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyD   88 (730)
                      |-|+|.-.-|||||+..|-+......-.-.++.....-.+.. +|  -.+.|.||||+..|..++..-..-+|++|||..
T Consensus       156 VTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G--~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVA  233 (683)
T KOG1145|consen  156 VTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG--KSITFLDTPGHAAFSAMRARGANVTDIVVLVVA  233 (683)
T ss_pred             EEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC--CEEEEecCCcHHHHHHHHhccCccccEEEEEEE
Confidence            778999999999999999887664433222222222223333 44  678999999999999999888888999999999


Q ss_pred             cCCC---CchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467         89 ISCQ---PTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD  156 (730)
Q Consensus        89 vtd~---eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~  156 (730)
                      +.|.   ++.+.++                                      .+-+.+.|+|++.||+|..
T Consensus       234 adDGVmpQT~EaIk--------------------------------------hAk~A~VpiVvAinKiDkp  266 (683)
T KOG1145|consen  234 ADDGVMPQTLEAIK--------------------------------------HAKSANVPIVVAINKIDKP  266 (683)
T ss_pred             ccCCccHhHHHHHH--------------------------------------HHHhcCCCEEEEEeccCCC
Confidence            9984   3444433                                      1234788999999999975

>smart00275 G_alpha G protein alpha subunit

Probab=98.68  E-value=4.5e-07  Score=99.39  Aligned_cols=133  Identities=17%  Similarity=0.193  Sum_probs=85.4

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCC----------chhhhHHHHHHHHHHhcccceEEEEeccCchh
Q psy17467         56 IKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQP----------TFDCLTDWLREIEEYASFKVLRVLVGGTSGLK  125 (730)
Q Consensus        56 v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~e----------Sfe~L~~wleeI~~~~~~~~piVLVg~k~dl~  125 (730)
                      +.+.+||++|+...++.|..++.++++||+|.|+++-.          .+++....++.+...                 
T Consensus       184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~-----------------  246 (342)
T smart00275      184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNS-----------------  246 (342)
T ss_pred             eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcC-----------------
Confidence            56899999999999999999999999999999999732          222222233333221                 


Q ss_pred             hHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCcccccccccc
Q psy17467        126 IVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKID  205 (730)
Q Consensus       126 ~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~D  205 (730)
                              .     .-.+.|++|++||.|+....     +.......++|.+.+.                         
T Consensus       247 --------~-----~~~~~piil~~NK~D~~~~K-----l~~~~l~~~fp~y~g~-------------------------  283 (342)
T smart00275      247 --------R-----WFANTSIILFLNKIDLFEEK-----IKKVPLVDYFPDYKGP-------------------------  283 (342)
T ss_pred             --------c-----cccCCcEEEEEecHHhHHHH-----hCCCchhccCCCCCCC-------------------------
Confidence                    1     11578999999999997532     1111223344444221                         


Q ss_pred             ccCCCCChHHHHHHHH-----h------cCCeEEEEecCCCCChHHHHHHHHHHHHHHH
Q psy17467        206 REDREIPTEVGEDFAK-----R------HDMYYLETSAKASDNVEKLFMQIAAELMEKL  253 (730)
Q Consensus       206 L~~R~Vs~ee~~~lak-----~------lg~~fvEtSAktG~GVeeLFe~Li~~l~e~~  253 (730)
                           -+.+.+..+..     .      ..+-.+.++|..-.++..+|+.+...+....
T Consensus       284 -----~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~  337 (342)
T smart00275      284 -----NDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN  337 (342)
T ss_pred             -----CCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence                 01222222211     1      2245678889999999999999888886554

Subunit of G proteins that contains the guanine nucleotide binding site

>PRK09866 hypothetical protein; Provisional

Probab=98.67  E-value=4.3e-07  Score=105.31  Aligned_cols=28  Identities=18%  Similarity=0.341  Sum_probs=24.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCC
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPG   35 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~   35 (730)
                      +.++++|..|+|||||+|.+++....++
T Consensus        70 ~~valvG~sgaGKSTLiNaL~G~~Vlpt   97 (741)
T PRK09866         70 MVLAIVGTMKAGKSTTINAIVGTEVLPN   97 (741)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCccccC
Confidence            6789999999999999999998655443

>COG3596 Predicted GTPase [General function prediction only]

Probab=98.66  E-value=8.9e-08  Score=100.90  Aligned_cols=174  Identities=17%  Similarity=0.252  Sum_probs=104.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEE-EEEeCCeEEEEEEEeCCCchh-------hhhhhHhhhc
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIK-TVEINNERIKLQIWDTAGQER-------FRSITQSYYR   78 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~-~i~vdg~~v~LqLwDTpG~e~-------~~sl~~~~~r   78 (730)
                      .++|+++|..|||||||+|++..+...+...-.+|.+.... ...+++  -.+.|||+||..+       ++.....++.
T Consensus        39 pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~  116 (296)
T COG3596          39 PVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDYLP  116 (296)
T ss_pred             ceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHHhh
Confidence            48899999999999999999997655443311222222211 122344  4589999999654       5666677888


Q ss_pred             cccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchh
Q psy17467         79 SAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDED  158 (730)
Q Consensus        79 ~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~  158 (730)
                      ..|.++++.|..|+.==-+ ..++.++....                                -+.+++++.|.+|....
T Consensus       117 ~~DLvL~l~~~~draL~~d-~~f~~dVi~~~--------------------------------~~~~~i~~VtQ~D~a~p  163 (296)
T COG3596         117 KLDLVLWLIKADDRALGTD-EDFLRDVIILG--------------------------------LDKRVLFVVTQADRAEP  163 (296)
T ss_pred             hccEEEEeccCCCccccCC-HHHHHHHHHhc--------------------------------cCceeEEEEehhhhhcc
Confidence            9999999999988642212 23444443322                                22567777888886531


Q ss_pred             hHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc--CCeEEEEecCCCC
Q psy17467        159 EHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH--DMYYLETSAKASD  236 (730)
Q Consensus       159 e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l--g~~fvEtSAktG~  236 (730)
                      .                         ..=..+++...|.+          ++-..+.+..+.+..  --+++..|+..+.
T Consensus       164 ~-------------------------~~W~~~~~~p~~a~----------~qfi~~k~~~~~~~~q~V~pV~~~~~r~~w  208 (296)
T COG3596         164 G-------------------------REWDSAGHQPSPAI----------KQFIEEKAEALGRLFQEVKPVVAVSGRLPW  208 (296)
T ss_pred             c-------------------------cccccccCCCCHHH----------HHHHHHHHHHHHHHHhhcCCeEEeccccCc
Confidence            0                         00011112222211          111222232222222  1267888899999


Q ss_pred             ChHHHHHHHHHHHH
Q psy17467        237 NVEKLFMQIAAELM  250 (730)
Q Consensus       237 GVeeLFe~Li~~l~  250 (730)
                      |++++...+++.+.
T Consensus       209 gl~~l~~ali~~lp  222 (296)
T COG3596         209 GLKELVRALITALP  222 (296)
T ss_pred             cHHHHHHHHHHhCc
Confidence            99999999998874

>KOG1707|consensus

Probab=98.65  E-value=2.2e-07  Score=105.57  Aligned_cols=158  Identities=19%  Similarity=0.309  Sum_probs=115.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      ..+++.++|+.++|||.+++.|+++.+...+..+....+....+...|....+.+-|.+-. ....+.+.- ..||++++
T Consensus       424 ~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~  501 (625)
T KOG1707|consen  424 KVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACL  501 (625)
T ss_pred             eeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEE
Confidence            4589999999999999999999998887766666665666677777788888889888754 333333333 78999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      +||++++.||+.+...++.-.                                 .....|+++|++|.|+++..+     
T Consensus       502 ~YDsS~p~sf~~~a~v~~~~~---------------------------------~~~~~Pc~~va~K~dlDe~~Q-----  543 (625)
T KOG1707|consen  502 VYDSSNPRSFEYLAEVYNKYF---------------------------------DLYKIPCLMVATKADLDEVPQ-----  543 (625)
T ss_pred             ecccCCchHHHHHHHHHHHhh---------------------------------hccCCceEEEeeccccchhhh-----
Confidence            999999999988765443321                                 125788999999999975321     


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCe-EEEEecCCCCChHHHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMY-YLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~-fvEtSAktG~GVeeLFe~  244 (730)
                                                                  ..+... .++|+++|++ -+..|.++... .++|..
T Consensus       544 --------------------------------------------~~~iqp-de~~~~~~i~~P~~~S~~~~~s-~~lf~k  577 (625)
T KOG1707|consen  544 --------------------------------------------RYSIQP-DEFCRQLGLPPPIHISSKTLSS-NELFIK  577 (625)
T ss_pred             --------------------------------------------ccCCCh-HHHHHhcCCCCCeeeccCCCCC-chHHHH
Confidence                                                        112222 7889999983 56667664223 889988


Q ss_pred             HHHHH
Q psy17467        245 IAAEL  249 (730)
Q Consensus       245 Li~~l  249 (730)
                      |+...
T Consensus       578 L~~~A  582 (625)
T KOG1707|consen  578 LATMA  582 (625)
T ss_pred             HHHhh
Confidence            88766

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=98.64  E-value=3.7e-07  Score=98.58  Aligned_cols=85  Identities=19%  Similarity=0.271  Sum_probs=55.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhH-------hh
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPP-GQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQ-------SY   76 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~-~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~-------~~   76 (730)
                      ...++|+++|.+||||||++|++++..... ...+..+.........++|  ..+.+|||||..+......       .+
T Consensus        36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~  113 (313)
T TIGR00991        36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRF  113 (313)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence            356899999999999999999999875422 1222223233233334455  7899999999765432222       11


Q ss_pred             h--ccccEEEEEeecCC
Q psy17467         77 Y--RSAHALILVYDISC   91 (730)
Q Consensus        77 ~--r~ADaIILVyDvtd   91 (730)
                      +  ...|++++|.+++.
T Consensus       114 l~~~g~DvVLyV~rLD~  130 (313)
T TIGR00991       114 LLGKTIDVLLYVDRLDA  130 (313)
T ss_pred             hhcCCCCEEEEEeccCc
Confidence            1  25899999976653

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.64  E-value=2e-07  Score=87.89  Aligned_cols=136  Identities=22%  Similarity=0.172  Sum_probs=91.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhh----HhhhccccEEE
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSIT----QSYYRSAHALI   84 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~----~~~~r~ADaII   84 (730)
                      |++++|..|+|||||.+.+-+....  |.-|       ..++++++    -.+||||..-....|    .....++|+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKT-------QAve~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKT-------QAVEFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhh--hccc-------ceeeccCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            7999999999999999999876532  2122       23344332    146999853222222    23466899999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      +|-++++++|--.-.                                    +  ..--..|+|-|.+|.|+.++.     
T Consensus        70 ~v~~and~~s~f~p~------------------------------------f--~~~~~k~vIgvVTK~DLaed~-----  106 (148)
T COG4917          70 YVHAANDPESRFPPG------------------------------------F--LDIGVKKVIGVVTKADLAEDA-----  106 (148)
T ss_pred             eeecccCccccCCcc------------------------------------c--ccccccceEEEEecccccchH-----
Confidence            999999987632210                                    0  011234467777788876432     


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFM  243 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe  243 (730)
                                                                     +.+..++|..+-|+ ++|++|+.++.||+++++
T Consensus       107 -----------------------------------------------dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~  139 (148)
T COG4917         107 -----------------------------------------------DISLVKRWLREAGAEPIFETSAVDNQGVEELVD  139 (148)
T ss_pred             -----------------------------------------------hHHHHHHHHHHcCCcceEEEeccCcccHHHHHH
Confidence                                                           23556777777787 699999999999999999


Q ss_pred             HHHH
Q psy17467        244 QIAA  247 (730)
Q Consensus       244 ~Li~  247 (730)
                      .+..
T Consensus       140 ~L~~  143 (148)
T COG4917         140 YLAS  143 (148)
T ss_pred             HHHh
Confidence            8764

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=98.60  E-value=6.1e-07  Score=94.31  Aligned_cols=87  Identities=16%  Similarity=0.276  Sum_probs=56.2

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh---h------
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPG-QGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS---I------   72 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~-~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s---l------   72 (730)
                      +-+..++|+++|.+|||||||+|.+++...... ..+..+..........++  ..+.+|||||..+...   .      
T Consensus        27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~  104 (249)
T cd01853          27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILS  104 (249)
T ss_pred             hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHH
Confidence            345679999999999999999999998764322 222222233333444555  6789999999754411   1      


Q ss_pred             -hHhhhc--cccEEEEEeecCC
Q psy17467         73 -TQSYYR--SAHALILVYDISC   91 (730)
Q Consensus        73 -~~~~~r--~ADaIILVyDvtd   91 (730)
                       ...++.  ..|++++|..++.
T Consensus       105 ~I~~~l~~~~idvIL~V~rlD~  126 (249)
T cd01853         105 SIKRYLKKKTPDVVLYVDRLDM  126 (249)
T ss_pred             HHHHHHhccCCCEEEEEEcCCC
Confidence             112332  5688888876654

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>KOG1917|consensus

Probab=98.58  E-value=1.7e-08  Score=117.76  Aligned_cols=87  Identities=64%  Similarity=1.043  Sum_probs=63.5

Q ss_pred             HHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHHhhcCCCCceeeec----cccccchhhHHHhHhhh
Q psy17467        255 EKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNIDIKSVS----GISQIRSDIVKSLSLYY  330 (730)
Q Consensus       255 ~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~~k~~p~~~~~~~~----~~~~~~~~~~~~l~~~~  330 (730)
                      ++.....++|.|+++|+|+.+.+|++.+.+|.++.++...+-++.+++.+|-.+...-+    ..+...+++.|+|.+||
T Consensus        14 ekl~ilndr~~G~~Tr~ynikka~gdsk~kp~~l~dk~~eg~ik~iv~~fp~~d~~~~n~~~~ylqkk~~ei~k~l~lyy   93 (1125)
T KOG1917|consen   14 EKLSILNDRGEGMLTRIYNIKKACGDSKTKPSFLIDKHLEGAIKFIVRKFPVVDMRRLNQILEYLQKKKPEIFKSLSLYY   93 (1125)
T ss_pred             ccceeecchhhhhHHHHhChhhhcCCCcCCchhhhccchhhHHHHHHHhhhHHHHHhHHHHHHHHhHhhHHHHhccceee
Confidence            34455678899999999999999999999999999999999999989888877744433    22334445555555555


Q ss_pred             hhhhccCCcee
Q psy17467        331 YTFVDLLHFKD  341 (730)
Q Consensus       331 ~~~~~~~~~~~  341 (730)
                      .+|+|++++||
T Consensus        94 ~tf~dl~~~kd  104 (1125)
T KOG1917|consen   94 ITFVDLLDLKD  104 (1125)
T ss_pred             eechhhhhhhh
Confidence            55555555443

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.58  E-value=6.5e-07  Score=98.03  Aligned_cols=84  Identities=19%  Similarity=0.200  Sum_probs=66.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeC----------------CeEEEEEEEeCCCchh---
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN----------------NERIKLQIWDTAGQER---   68 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vd----------------g~~v~LqLwDTpG~e~---   68 (730)
                      +++-|||.||||||||+|.++........+|..++++....+.+.                -....++++|++|.-.   
T Consensus         3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs   82 (372)
T COG0012           3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS   82 (372)
T ss_pred             ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence            789999999999999999999988766777988888877776652                1245789999998543   


Q ss_pred             -hhhhhHhh---hccccEEEEEeecCC
Q psy17467         69 -FRSITQSY---YRSAHALILVYDISC   91 (730)
Q Consensus        69 -~~sl~~~~---~r~ADaIILVyDvtd   91 (730)
                       -..+..++   +|.+|+|+.|+|+.+
T Consensus        83 ~GeGLGNkFL~~IRevdaI~hVVr~f~  109 (372)
T COG0012          83 KGEGLGNKFLDNIREVDAIIHVVRCFG  109 (372)
T ss_pred             cCCCcchHHHHhhhhcCeEEEEEEecC
Confidence             33344444   789999999999874

>PF14714 KH_dom-like: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; PDB: 2HJG_A 1MKY_A

Probab=98.56  E-value=8.4e-09  Score=90.44  Aligned_cols=65  Identities=11%  Similarity=0.004  Sum_probs=50.4

Q ss_pred             CCCCCCccccchhhHHHHHHhhcCCCCceeeeccccccchhhHHHhHhhhhhhhccCCceeEEEee
Q psy17467        281 AKSKPSFLSDKSLESCIKQIVKKFPNIDIKSVSGISQIRSDIVKSLSLYYYTFVDLLHFKDCVYLS  346 (730)
Q Consensus       281 ~~s~P~~l~~~~~~~~~~~~~k~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (730)
                      ..++||. .++..+..|++|++..||+|+.+|+.++.++++|.|||.+.+|+.+++-|+|+++.++
T Consensus        16 ~~~~pp~-~g~~~Ki~Y~tQv~~~PPtFv~f~N~~~~~~~sY~ryL~n~lRe~f~f~G~Pi~l~~R   80 (80)
T PF14714_consen   16 ERHPPPS-KGKRLKIYYATQVGTRPPTFVLFVNDPELLPESYKRYLENQLREAFGFEGVPIRLIFR   80 (80)
T ss_dssp             CCS--SE-TTCC--EEEEEEEETTTTEEEEEES-CCC--HHHHHHHHHHHHHHH--TTS--EEEEE
T ss_pred             HhCCCCC-CCceeEEEEEEeCCCCCCEEEEEeCCcccCCHHHHHHHHHHHHHHCCCCceeEEEEeC
Confidence            4556665 8899999999999999999999999999999999999999999999999999999885

>KOG0705|consensus

Probab=98.52  E-value=2.6e-07  Score=104.01  Aligned_cols=164  Identities=21%  Similarity=0.364  Sum_probs=123.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      ..+|+-|||..++|||+|+.||+.+.|.....|.-|  .+.+.+.+++....+-+.|.+|..     -.+|..++|++||
T Consensus        29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIf  101 (749)
T KOG0705|consen   29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVF  101 (749)
T ss_pred             chhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEE
Confidence            458999999999999999999999999887766655  567777888888999999999843     2467789999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      ||.+.+..+|+.+..+...+..+.                              ....+|.+++|++.-...        
T Consensus       102 vf~~~d~~s~q~v~~l~~~l~~~r------------------------------~r~~i~l~lvgtqd~iS~--------  143 (749)
T KOG0705|consen  102 VFSVEDEQSFQAVQALAHEMSSYR------------------------------NISDLPLILVGTQDHISA--------  143 (749)
T ss_pred             EEEeccccCHHHHHHHHhhccccc------------------------------ccccchHHhhcCcchhhc--------
Confidence            999999999999886665543322                              124556666665322210        


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH-hcCCeEEEEecCCCCChHHHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK-RHDMYYLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak-~lg~~fvEtSAktG~GVeeLFe~  244 (730)
                                                             + ..+.+...++++++. ...|.+++++|.+|.+++.+|..
T Consensus       144 ---------------------------------------~-~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~  183 (749)
T KOG0705|consen  144 ---------------------------------------K-RPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQE  183 (749)
T ss_pred             ---------------------------------------c-cccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHH
Confidence                                                   1 124455566666554 44689999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy17467        245 IAAELMEKLA  254 (730)
Q Consensus       245 Li~~l~e~~~  254 (730)
                      ++..+.....
T Consensus       184 ~~~k~i~~~~  193 (749)
T KOG0705|consen  184 VAQKIVQLRK  193 (749)
T ss_pred             HHHHHHHHHh
Confidence            9888766533

>PRK13768 GTPase; Provisional

Probab=98.48  E-value=5.8e-07  Score=94.43  Aligned_cols=25  Identities=20%  Similarity=0.388  Sum_probs=22.6

Q ss_pred             CeEEEEecCCCCChHHHHHHHHHHH
Q psy17467        225 MYYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       225 ~~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                      .+++++||+++.|++++.++|.+.+
T Consensus       222 ~~vi~iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        222 VRVIPVSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             CcEEEEECCCCcCHHHHHHHHHHHc
Confidence            5789999999999999999998765

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=98.47  E-value=5.7e-07  Score=109.13  Aligned_cols=121  Identities=14%  Similarity=0.135  Sum_probs=81.9

Q ss_pred             CCCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCC-----------CCCC-----cceeeEEEEEEEe-------------
Q psy17467          1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPP-----------GQGA-----TIGVDFMIKTVEI-------------   51 (730)
Q Consensus         1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~-----------~~~p-----Tig~d~~~~~i~v-------------   51 (730)
                      |++.+..-+|+|+|..++|||||+.+|+...-..           ++.+     .++.......+.+             
T Consensus        13 ~~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~   92 (843)
T PLN00116         13 MDKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGE   92 (843)
T ss_pred             hhCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccc
Confidence            3455666799999999999999999998532110           0101     1111111122222             


Q ss_pred             -CCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHH
Q psy17467         52 -NNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEM  130 (730)
Q Consensus        52 -dg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i  130 (730)
                       ++..+.++++||||+.+|..-....++.+|++|+|+|+++....+...-|...+                         
T Consensus        93 ~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~-------------------------  147 (843)
T PLN00116         93 RDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL-------------------------  147 (843)
T ss_pred             cCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHH-------------------------
Confidence             123578999999999999887788889999999999998866554433332221                         


Q ss_pred             HhhhcccccCCCCCceEEeccCCCcc
Q psy17467        131 ASAAGLLCTVDPALATALASDKTDLD  156 (730)
Q Consensus       131 ~~~~g~~~~~~~~~PVVLVGNK~DL~  156 (730)
                                ..+.|++++.||+|+.
T Consensus       148 ----------~~~~p~i~~iNK~D~~  163 (843)
T PLN00116        148 ----------GERIRPVLTVNKMDRC  163 (843)
T ss_pred             ----------HCCCCEEEEEECCccc
Confidence                      2467888899999987

>TIGR00101 ureG urease accessory protein UreG

Probab=98.47  E-value=1e-06  Score=89.55  Aligned_cols=27  Identities=11%  Similarity=0.138  Sum_probs=24.1

Q ss_pred             cCCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467        223 HDMYYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       223 lg~~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                      .++++++|||++|+|++++|+++.+.+
T Consensus       169 ~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       169 GEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            467899999999999999999998655

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.47  E-value=9.3e-07  Score=97.60  Aligned_cols=93  Identities=20%  Similarity=0.280  Sum_probs=63.9

Q ss_pred             CCCCcceeEEEEEcCCCCCHHHHHHHHHcC--CCCCC---------------------------CCCcceeeEEEEEEEe
Q psy17467          1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQG--VFPPG---------------------------QGATIGVDFMIKTVEI   51 (730)
Q Consensus         1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~--~f~~~---------------------------~~pTig~d~~~~~i~v   51 (730)
                      |...+.-++++++|...+|||||+-||+..  .++..                           ....-|.+.......+
T Consensus         1 ~~~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~f   80 (428)
T COG5256           1 MASEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKF   80 (428)
T ss_pred             CCCCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEe
Confidence            344556699999999999999999998742  11110                           0011222333333344


Q ss_pred             CCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCC
Q psy17467         52 NNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQP   93 (730)
Q Consensus        52 dg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~e   93 (730)
                      .-..+.+.|+|+||+.+|-.-.-.-...||+.|||+|+.+.+
T Consensus        81 et~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~e  122 (428)
T COG5256          81 ETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGE  122 (428)
T ss_pred             ecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCc
Confidence            444578999999999888765556677899999999998763

>PTZ00416 elongation factor 2; Provisional

Probab=98.43  E-value=8.9e-07  Score=107.33  Aligned_cols=95  Identities=12%  Similarity=0.107  Sum_probs=64.3

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCC-----------CCC-----CcceeeEEEEEEEeC--------CeEEEE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPP-----------GQG-----ATIGVDFMIKTVEIN--------NERIKL   58 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~-----------~~~-----pTig~d~~~~~i~vd--------g~~v~L   58 (730)
                      +.+..-+|+|+|..++|||||+++|+...-..           ++.     ..+++......+.++        ++.+.+
T Consensus        15 ~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i   94 (836)
T PTZ00416         15 NPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLI   94 (836)
T ss_pred             CccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEE
Confidence            34555699999999999999999998632111           000     011111111223333        225789


Q ss_pred             EEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhh
Q psy17467         59 QIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDC   97 (730)
Q Consensus        59 qLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~   97 (730)
                      .++||||+.+|..-....++.+|++|+|+|+++.-.-+.
T Consensus        95 ~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t  133 (836)
T PTZ00416         95 NLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT  133 (836)
T ss_pred             EEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH
Confidence            999999999887777788899999999999987654443

>cd01882 BMS1 Bms1

Probab=98.42  E-value=3.3e-06  Score=87.10  Aligned_cols=81  Identities=21%  Similarity=0.317  Sum_probs=52.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      ...|+++|.+|+|||||++.+.+..-........|.    .++ .......+.++||||..  ..+. ...+.+|++++|
T Consensus        39 ~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvVllv  110 (225)
T cd01882          39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI--NAMI-DIAKVADLVLLL  110 (225)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH--HHHH-HHHHhcCEEEEE
Confidence            356999999999999999999864211111111221    111 11234678999999864  2222 346789999999


Q ss_pred             eecCCCCch
Q psy17467         87 YDISCQPTF   95 (730)
Q Consensus        87 yDvtd~eSf   95 (730)
                      +|.+.....
T Consensus       111 iDa~~~~~~  119 (225)
T cd01882         111 IDASFGFEM  119 (225)
T ss_pred             EecCcCCCH
Confidence            998865443

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG1144|consensus

Probab=98.37  E-value=1.7e-06  Score=100.26  Aligned_cols=183  Identities=18%  Similarity=0.217  Sum_probs=108.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeC------------Ce----EEEEEEEeCCCchhhhhhh
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN------------NE----RIKLQIWDTAGQERFRSIT   73 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vd------------g~----~v~LqLwDTpG~e~~~sl~   73 (730)
                      |||+|.-..|||-|+..+.+.........+++.......+...            ++    ---+.++||||++.|..++
T Consensus       478 cCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlR  557 (1064)
T KOG1144|consen  478 CCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLR  557 (1064)
T ss_pred             EEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhh
Confidence            8999999999999999998765443332333222211122111            11    0127789999999999999


Q ss_pred             HhhhccccEEEEEeecCC---CCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEec
Q psy17467         74 QSYYRSAHALILVYDISC---QPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALAS  150 (730)
Q Consensus        74 ~~~~r~ADaIILVyDvtd---~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVG  150 (730)
                      ......||.+|+|.|+..   +++.+.+.    .+                                  ...++|+||+.
T Consensus       558 srgsslC~~aIlvvdImhGlepqtiESi~----lL----------------------------------R~rktpFivAL  599 (1064)
T KOG1144|consen  558 SRGSSLCDLAILVVDIMHGLEPQTIESIN----LL----------------------------------RMRKTPFIVAL  599 (1064)
T ss_pred             hccccccceEEEEeehhccCCcchhHHHH----HH----------------------------------HhcCCCeEEee
Confidence            999999999999999975   44444432    11                                  12578889999


Q ss_pred             cCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHh-c------
Q psy17467        151 DKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR-H------  223 (730)
Q Consensus       151 NK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~-l------  223 (730)
                      ||+|..-+                  |..++...+...+-....  .+  .|-  ...|.  ..-.-+|+.+ +      
T Consensus       600 NKiDRLYg------------------wk~~p~~~i~~~lkkQ~k--~v--~~E--F~~R~--~~ii~efaEQgLN~~Lyy  653 (1064)
T KOG1144|consen  600 NKIDRLYG------------------WKSCPNAPIVEALKKQKK--DV--QNE--FKERL--NNIIVEFAEQGLNAELYY  653 (1064)
T ss_pred             hhhhhhcc------------------cccCCCchHHHHHHHhhH--HH--HHH--HHHHH--HHHHHHHHHcccchhhee
Confidence            99997532                  222222222222211000  00  000  00000  0001111111 0      


Q ss_pred             -------CCeEEEEecCCCCChHHHHHHHHHHHHHHHHHH
Q psy17467        224 -------DMYYLETSAKASDNVEKLFMQIAAELMEKLAEK  256 (730)
Q Consensus       224 -------g~~fvEtSAktG~GVeeLFe~Li~~l~e~~~~~  256 (730)
                             -++++++||.+|+||.+|+-+|+.........+
T Consensus       654 kNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~k  693 (1064)
T KOG1144|consen  654 KNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEK  693 (1064)
T ss_pred             ecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHH
Confidence                   146899999999999999999998876655553

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.37  E-value=2.5e-06  Score=86.58  Aligned_cols=55  Identities=15%  Similarity=0.153  Sum_probs=39.8

Q ss_pred             CCccccccccccccCC-CCChHHHHHHHHhc--CCeEEEEecCCCCChHHHHHHHHHH
Q psy17467        194 NNIHCMARNKIDREDR-EIPTEVGEDFAKRH--DMYYLETSAKASDNVEKLFMQIAAE  248 (730)
Q Consensus       194 ~~~~ivVgNK~DL~~R-~Vs~ee~~~lak~l--g~~fvEtSAktG~GVeeLFe~Li~~  248 (730)
                      ..+.+++.||+|+... ....++..+..+..  +++++++||++|.|++++|+++.+.
T Consensus       148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3567889999998532 22233444444444  3789999999999999999999764

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK07560 elongation factor EF-2; Reviewed

Probab=98.33  E-value=2e-06  Score=102.91  Aligned_cols=96  Identities=17%  Similarity=0.164  Sum_probs=65.3

Q ss_pred             CCCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCC-----------CCCC-----cceeeEEEEEE--EeCCeEEEEEEEe
Q psy17467          1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPP-----------GQGA-----TIGVDFMIKTV--EINNERIKLQIWD   62 (730)
Q Consensus         1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~-----------~~~p-----Tig~d~~~~~i--~vdg~~v~LqLwD   62 (730)
                      |.+.+..-+|+|+|..++|||||+.+++...-..           ++.+     .++.......+  .+++..+.+.|+|
T Consensus        14 ~~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liD   93 (731)
T PRK07560         14 MKNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLID   93 (731)
T ss_pred             hhchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEc
Confidence            3445555689999999999999999997521110           0000     01111111122  2355568899999


Q ss_pred             CCCchhhhhhhHhhhccccEEEEEeecCCCCchh
Q psy17467         63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFD   96 (730)
Q Consensus        63 TpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe   96 (730)
                      |||+.+|.......++.+|++|+|+|+.....-+
T Consensus        94 tPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~  127 (731)
T PRK07560         94 TPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQ  127 (731)
T ss_pred             CCCccChHHHHHHHHHhcCEEEEEEECCCCCCcc
Confidence            9999988877788899999999999988764443

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.24  E-value=2.3e-05  Score=91.55  Aligned_cols=103  Identities=17%  Similarity=0.276  Sum_probs=63.2

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCC-CCCCCC-CcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh-------hhh-
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGV-FPPGQG-ATIGVDFMIKTVEINNERIKLQIWDTAGQERFR-------SIT-   73 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~-f~~~~~-pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~-------sl~-   73 (730)
                      -++.++|+++|.+||||||++|.+++.. +..... +.++ ........+++  ..+.|+||||..+..       .+. 
T Consensus       115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TT-r~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk  191 (763)
T TIGR00993       115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTT-SVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILS  191 (763)
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCce-EEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHH
Confidence            3466899999999999999999999875 333322 2222 22222334455  679999999965421       111 


Q ss_pred             --Hhhhc--cccEEEEEeecCCCCchhhhHHHHHHHHHHh
Q psy17467         74 --QSYYR--SAHALILVYDISCQPTFDCLTDWLREIEEYA  109 (730)
Q Consensus        74 --~~~~r--~ADaIILVyDvtd~eSfe~L~~wleeI~~~~  109 (730)
                        ..++.  .+|++|+|..++.......-..++..|....
T Consensus       192 ~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lF  231 (763)
T TIGR00993       192 SVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVL  231 (763)
T ss_pred             HHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHh
Confidence              12333  4799999998864433222224555554444

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.20  E-value=9.5e-06  Score=88.76  Aligned_cols=26  Identities=15%  Similarity=0.230  Sum_probs=23.2

Q ss_pred             CCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467        224 DMYYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       224 g~~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                      ..+++.+||++|.||+++++.+.+.+
T Consensus       234 ~~pVi~vSA~~g~GIdeL~~~I~~~~  259 (332)
T PRK09435        234 QPPVLTCSALEGEGIDEIWQAIEDHR  259 (332)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            35799999999999999999998765

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=98.18  E-value=1.8e-05  Score=80.81  Aligned_cols=81  Identities=19%  Similarity=0.286  Sum_probs=50.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCC--CCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh--------hhhH---
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQ--GATIGVDFMIKTVEINNERIKLQIWDTAGQERFR--------SITQ---   74 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~--~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~--------sl~~---   74 (730)
                      ++|+++|..|+||||++|.+++.......  ...++.........++|  ..+.++||||-.+..        .+..   
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            58999999999999999999987653322  12223344445557788  668999999942211        1111   


Q ss_pred             hhhccccEEEEEeecC
Q psy17467         75 SYYRSAHALILVYDIS   90 (730)
Q Consensus        75 ~~~r~ADaIILVyDvt   90 (730)
                      ....+.|+||||+.++
T Consensus        79 ~~~~g~ha~llVi~~~   94 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLG   94 (212)
T ss_dssp             HTTT-ESEEEEEEETT
T ss_pred             hccCCCeEEEEEEecC
Confidence            2245689999999988

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=98.15  E-value=2.9e-05  Score=86.69  Aligned_cols=101  Identities=18%  Similarity=0.276  Sum_probs=60.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcC----CCC------------CCCCCc---ceeeEEE---EEEEe---CCeEEEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQG----VFP------------PGQGAT---IGVDFMI---KTVEI---NNERIKLQIW   61 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~----~f~------------~~~~pT---ig~d~~~---~~i~v---dg~~v~LqLw   61 (730)
                      .+-|.|+|+.++|||||+|+|.+.    ...            +...+.   .+.++..   +.+++   ++....+.++
T Consensus        17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI   96 (492)
T TIGR02836        17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV   96 (492)
T ss_pred             cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence            467999999999999999999987    322            111121   2223333   23333   4556788999


Q ss_pred             eCCCchhhhhh-----------------------------hHhhhc-cccEEEEEe-ecC--C--CCchhhh-HHHHHHH
Q psy17467         62 DTAGQERFRSI-----------------------------TQSYYR-SAHALILVY-DIS--C--QPTFDCL-TDWLREI  105 (730)
Q Consensus        62 DTpG~e~~~sl-----------------------------~~~~~r-~ADaIILVy-Dvt--d--~eSfe~L-~~wleeI  105 (730)
                      ||+|-..-..+                             .+..+. .+|+.|+|. |.+  +  ++.+... .+|++++
T Consensus        97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL  176 (492)
T TIGR02836        97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL  176 (492)
T ss_pred             ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence            99984321111                             123355 789988888 653  2  3344443 3466666


Q ss_pred             HH
Q psy17467        106 EE  107 (730)
Q Consensus       106 ~~  107 (730)
                      +.
T Consensus       177 k~  178 (492)
T TIGR02836       177 KE  178 (492)
T ss_pred             Hh
Confidence            54

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG0082|consensus

Probab=98.13  E-value=5.4e-05  Score=83.11  Aligned_cols=146  Identities=17%  Similarity=0.255  Sum_probs=89.3

Q ss_pred             EEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCc--hhhh--HHHHHHHHHHhcccceEEEEeccCc
Q psy17467         48 TVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPT--FDCL--TDWLREIEEYASFKVLRVLVGGTSG  123 (730)
Q Consensus        48 ~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eS--fe~L--~~wleeI~~~~~~~~piVLVg~k~d  123 (730)
                      .+.+.+  ..+.++|++||...+.-|-.++.++++||||.++++-..  +++-  .+..+.+                  
T Consensus       189 ~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~------------------  248 (354)
T KOG0082|consen  189 EFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESL------------------  248 (354)
T ss_pred             EEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHH------------------
Confidence            334444  678999999999989999999999999999999986332  2221  1111111                  


Q ss_pred             hhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCcccccccc
Q psy17467        124 LKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNK  203 (730)
Q Consensus       124 l~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK  203 (730)
                       .-...|.+...+     .+++++|..||.||.+..     +-......|+|.+.+.                       
T Consensus       249 -~LF~sI~n~~~F-----~~tsiiLFLNK~DLFeEK-----i~~~~~~~~Fpdy~G~-----------------------  294 (354)
T KOG0082|consen  249 -KLFESICNNKWF-----ANTSIILFLNKKDLFEEK-----IKKVPLTDCFPDYKGV-----------------------  294 (354)
T ss_pred             -HHHHHHhcCccc-----ccCcEEEEeecHHHHHHH-----hccCchhhhCcCCCCC-----------------------
Confidence             001112222222     578999999999998643     1122234455554222                       


Q ss_pred             ccccCCCCChHHHHHHHH--------h--cCCeEEEEecCCCCChHHHHHHHHHHHHHHHH
Q psy17467        204 IDREDREIPTEVGEDFAK--------R--HDMYYLETSAKASDNVEKLFMQIAAELMEKLA  254 (730)
Q Consensus       204 ~DL~~R~Vs~ee~~~lak--------~--lg~~fvEtSAktG~GVeeLFe~Li~~l~e~~~  254 (730)
                             -..+++..+.+        .  ..+-...+.|..-.+|+.+|..+.+.+....-
T Consensus       295 -------~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nl  348 (354)
T KOG0082|consen  295 -------NTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNL  348 (354)
T ss_pred             -------CChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHH
Confidence                   11122222211        1  13446777888889999999999998866543

>KOG0410|consensus

Probab=98.12  E-value=7.8e-06  Score=87.97  Aligned_cols=85  Identities=20%  Similarity=0.256  Sum_probs=56.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEe-CCeEEEEEEEeCCCchhh--hhhhH------hhhccc
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEI-NNERIKLQIWDTAGQERF--RSITQ------SYYRSA   80 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~v-dg~~v~LqLwDTpG~e~~--~sl~~------~~~r~A   80 (730)
                      |++||-.|+|||||+++|+.....+...-..+.|........ +|  -.+-+.||-|--.-  ..+..      .-+..|
T Consensus       181 iavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg--~~vlltDTvGFisdLP~~LvaAF~ATLeeVaea  258 (410)
T KOG0410|consen  181 IAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG--NFVLLTDTVGFISDLPIQLVAAFQATLEEVAEA  258 (410)
T ss_pred             EEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC--cEEEEeechhhhhhCcHHHHHHHHHHHHHHhhc
Confidence            899999999999999999976555444444444444444443 33  34678899883211  11111      225689


Q ss_pred             cEEEEEeecCCCCchh
Q psy17467         81 HALILVYDISCQPTFD   96 (730)
Q Consensus        81 DaIILVyDvtd~eSfe   96 (730)
                      |.++-|.|++.|.--+
T Consensus       259 dlllHvvDiShP~ae~  274 (410)
T KOG0410|consen  259 DLLLHVVDISHPNAEE  274 (410)
T ss_pred             ceEEEEeecCCccHHH
Confidence            9999999999986443

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=98.12  E-value=1.1e-05  Score=77.79  Aligned_cols=48  Identities=25%  Similarity=0.281  Sum_probs=35.3

Q ss_pred             EEEEeCCCchh----hhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHH
Q psy17467         58 LQIWDTAGQER----FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI  105 (730)
Q Consensus        58 LqLwDTpG~e~----~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI  105 (730)
                      +.|+||||...    ...+...++..+|++|+|.+.+...+-.+...|.+..
T Consensus       103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~  154 (168)
T PF00350_consen  103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQML  154 (168)
T ss_dssp             EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHH
T ss_pred             eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHh
Confidence            78999999743    3356778889999999999998865555544444444

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.07  E-value=2.5e-06  Score=89.17  Aligned_cols=24  Identities=21%  Similarity=0.360  Sum_probs=18.9

Q ss_pred             eEEEEecCCCCChHHHHHHHHHHH
Q psy17467        226 YYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       226 ~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                      .|+.+|+++++|+++++..+-+.+
T Consensus       213 ~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  213 RFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             --EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             eEEEEECCChHHHHHHHHHHHHHh
Confidence            699999999999999999887654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.06  E-value=3e-05  Score=83.43  Aligned_cols=25  Identities=24%  Similarity=0.227  Sum_probs=22.5

Q ss_pred             CeEEEEecCCCCChHHHHHHHHHHH
Q psy17467        225 MYYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       225 ~~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                      .++++|||++|.|++++++++.+..
T Consensus       213 ~~v~~iSA~~g~Gi~~L~~~i~~~~  237 (300)
T TIGR00750       213 PPVLTTSAVEGRGIDELWDAIEEHK  237 (300)
T ss_pred             CCEEEEEccCCCCHHHHHHHHHHHH
Confidence            4689999999999999999998864

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd01859 MJ1464 MJ1464

Probab=98.05  E-value=2.8e-05  Score=74.83  Aligned_cols=29  Identities=17%  Similarity=0.011  Sum_probs=24.9

Q ss_pred             HhcCCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467        221 KRHDMYYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       221 k~lg~~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                      ...+.+++++||++|.|++++++.+.+.+
T Consensus        67 ~~~~~~~~~iSa~~~~gi~~L~~~l~~~~   95 (156)
T cd01859          67 ESEGIPVVYVSAKERLGTKILRRTIKELA   95 (156)
T ss_pred             HhCCCcEEEEEccccccHHHHHHHHHHHH
Confidence            34567899999999999999999998766

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01855 YqeH YqeH

Probab=98.04  E-value=2e-05  Score=78.40  Aligned_cols=24  Identities=29%  Similarity=0.120  Sum_probs=22.0

Q ss_pred             eEEEEecCCCCChHHHHHHHHHHH
Q psy17467        226 YYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       226 ~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                      .++++||++|.|++++++.+.+.+
T Consensus       101 ~i~~vSA~~~~gi~eL~~~l~~~l  124 (190)
T cd01855         101 DVILISAKKGWGVEELINAIKKLA  124 (190)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            589999999999999999998776

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.01  E-value=9.5e-06  Score=77.26  Aligned_cols=54  Identities=24%  Similarity=0.303  Sum_probs=39.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ   66 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~   66 (730)
                      +++++|.+|||||||+|++++...... ....|.+.....+.+++   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSV-SATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceee-CCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            799999999999999999998776432 23333344455555554   4799999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG0461|consensus

Probab=97.99  E-value=8.9e-05  Score=80.42  Aligned_cols=95  Identities=19%  Similarity=0.308  Sum_probs=60.8

Q ss_pred             CCCCcceeEEEEEcCCCCCHHHHHHHHHcC----CCCCC---CCCcceeeEEEEEEEe-------CCeEEEEEEEeCCCc
Q psy17467          1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQG----VFPPG---QGATIGVDFMIKTVEI-------NNERIKLQIWDTAGQ   66 (730)
Q Consensus         1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~----~f~~~---~~pTig~d~~~~~i~v-------dg~~v~LqLwDTpG~   66 (730)
                      |...-..+++-++|.-.+|||+|.+++..-    -|...   ....++.|.....+.+       .++..++.++|+||+
T Consensus         1 m~~~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGH   80 (522)
T KOG0461|consen    1 MTSPPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGH   80 (522)
T ss_pred             CCCCCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCc
Confidence            344445689999999999999999999642    22222   1122333333333332       366788899999998


Q ss_pred             hhhhhhhHhhhcc---ccEEEEEeecCCCCchhhh
Q psy17467         67 ERFRSITQSYYRS---AHALILVYDISCQPTFDCL   98 (730)
Q Consensus        67 e~~~sl~~~~~r~---ADaIILVyDvtd~eSfe~L   98 (730)
                      ..   +.+..+-.   .|..++|+|++....-+.+
T Consensus        81 as---LIRtiiggaqiiDlm~lviDv~kG~QtQtA  112 (522)
T KOG0461|consen   81 AS---LIRTIIGGAQIIDLMILVIDVQKGKQTQTA  112 (522)
T ss_pred             HH---HHHHHHhhhheeeeeeEEEehhcccccccc
Confidence            54   44444443   4888999999875444433

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=97.98  E-value=4.1e-05  Score=85.66  Aligned_cols=84  Identities=20%  Similarity=0.339  Sum_probs=62.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC--CCCCC------------CCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhh
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQG--VFPPG------------QGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSIT   73 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~--~f~~~------------~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~   73 (730)
                      =+|+|+-.-.-|||||+..++.+  .|...            ....-|++.-.+.-.++.+.+.++|+||||+.+|..-.
T Consensus         6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV   85 (603)
T COG1217           6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV   85 (603)
T ss_pred             ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence            37999999999999999999863  22211            11223334444443344444899999999999999988


Q ss_pred             HhhhccccEEEEEeecCC
Q psy17467         74 QSYYRSAHALILVYDISC   91 (730)
Q Consensus        74 ~~~~r~ADaIILVyDvtd   91 (730)
                      +..+.-.|+++|+.|+.+
T Consensus        86 ERvl~MVDgvlLlVDA~E  103 (603)
T COG1217          86 ERVLSMVDGVLLLVDASE  103 (603)
T ss_pred             hhhhhhcceEEEEEEccc
Confidence            899999999999999987

>smart00053 DYNc Dynamin, GTPase

Probab=97.97  E-value=6.4e-05  Score=78.86  Aligned_cols=25  Identities=24%  Similarity=0.510  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVF   32 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f   32 (730)
                      -.|+++|+.|+||||+++.+.+..+
T Consensus        27 p~i~vvG~~~~GKSt~l~~i~g~~~   51 (240)
T smart00053       27 PQIAVVGGQSAGKSSVLENFVGRDF   51 (240)
T ss_pred             CeEEEEcCCCccHHHHHHHHhCCCc
Confidence            4799999999999999999998653

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PRK12289 GTPase RsgA; Reviewed

Probab=97.96  E-value=2.8e-05  Score=85.76  Aligned_cols=91  Identities=20%  Similarity=0.226  Sum_probs=64.3

Q ss_pred             hhhHhhhccccEEEEEeecCCCC-chhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEe
Q psy17467         71 SITQSYYRSAHALILVYDISCQP-TFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALA  149 (730)
Q Consensus        71 sl~~~~~r~ADaIILVyDvtd~e-Sfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLV  149 (730)
                      .+.+..+.++|++++|+|++++. ++..+..|+..+..                                  .+.|++||
T Consensus        81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~----------------------------------~~ip~ILV  126 (352)
T PRK12289         81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES----------------------------------TGLEIVLC  126 (352)
T ss_pred             ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH----------------------------------CCCCEEEE
Confidence            34456688999999999999875 44456667665421                                  46778888


Q ss_pred             ccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEE
Q psy17467        150 SDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLE  229 (730)
Q Consensus       150 GNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvE  229 (730)
                      +||+||.+.+.                                                    .+...+....+|+.+++
T Consensus       127 lNK~DLv~~~~----------------------------------------------------~~~~~~~~~~~g~~v~~  154 (352)
T PRK12289        127 LNKADLVSPTE----------------------------------------------------QQQWQDRLQQWGYQPLF  154 (352)
T ss_pred             EEchhcCChHH----------------------------------------------------HHHHHHHHHhcCCeEEE
Confidence            88888853211                                                    01112223467889999


Q ss_pred             EecCCCCChHHHHHHHHH
Q psy17467        230 TSAKASDNVEKLFMQIAA  247 (730)
Q Consensus       230 tSAktG~GVeeLFe~Li~  247 (730)
                      +||++|.|++++++.+..
T Consensus       155 iSA~tg~GI~eL~~~L~~  172 (352)
T PRK12289        155 ISVETGIGLEALLEQLRN  172 (352)
T ss_pred             EEcCCCCCHHHHhhhhcc
Confidence            999999999999998864

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=97.94  E-value=4.3e-05  Score=83.16  Aligned_cols=156  Identities=22%  Similarity=0.239  Sum_probs=96.1

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCC------------CC----C---------------CCcceeeEEEEEEEeC
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFP------------PG----Q---------------GATIGVDFMIKTVEIN   52 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~------------~~----~---------------~pTig~d~~~~~i~vd   52 (730)
                      .+.++|++-+|.-.=|||||+-||+...-.            ..    .               ....|++...-...+.
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            345799999999999999999999853110            00    0               0112222222222223


Q ss_pred             CeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHh
Q psy17467         53 NERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMAS  132 (730)
Q Consensus        53 g~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~  132 (730)
                      -.+-++.+-||||++.|.+-.-.-...||+.|+++|+...        .+++-+++.                   .|..
T Consensus        83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--------vl~QTrRHs-------------------~I~s  135 (431)
T COG2895          83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--------VLEQTRRHS-------------------FIAS  135 (431)
T ss_pred             cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--------hHHHhHHHH-------------------HHHH
Confidence            3345688999999998876544455679999999998421        223333322                   1222


Q ss_pred             hhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCC
Q psy17467        133 AAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIP  212 (730)
Q Consensus       133 ~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs  212 (730)
                      -.|+       .-++++.||+||.+-.+.  .+                                           .. -
T Consensus       136 LLGI-------rhvvvAVNKmDLvdy~e~--~F-------------------------------------------~~-I  162 (431)
T COG2895         136 LLGI-------RHVVVAVNKMDLVDYSEE--VF-------------------------------------------EA-I  162 (431)
T ss_pred             HhCC-------cEEEEEEeeecccccCHH--HH-------------------------------------------HH-H
Confidence            2233       347888999999753211  00                                           00 1


Q ss_pred             hHHHHHHHHhcCC---eEEEEecCCCCChH
Q psy17467        213 TEVGEDFAKRHDM---YYLETSAKASDNVE  239 (730)
Q Consensus       213 ~ee~~~lak~lg~---~fvEtSAktG~GVe  239 (730)
                      .++-..|+..+|+   .++++||..|.||-
T Consensus       163 ~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         163 VADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            2455678888876   59999999999984

>KOG3886|consensus

Probab=97.93  E-value=1.1e-05  Score=83.29  Aligned_cols=118  Identities=22%  Similarity=0.352  Sum_probs=77.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh-----hhHhhhcccc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS-----ITQSYYRSAH   81 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s-----l~~~~~r~AD   81 (730)
                      =||+++|..|+||||+=.-+..+.. .....++.++|.....+.+-|. ..+++||.+|++.+-.     .....+++.+
T Consensus         5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV~   83 (295)
T KOG3886|consen    5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ   83 (295)
T ss_pred             ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheehe
Confidence            4899999999999998655442221 1122244444565666666553 5699999999985422     2245688999


Q ss_pred             EEEEEeecCCCCchhhhH---HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchh
Q psy17467         82 ALILVYDISCQPTFDCLT---DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDED  158 (730)
Q Consensus        82 aIILVyDvtd~eSfe~L~---~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~  158 (730)
                      ++++|||+...+--.++.   .-++.+.                                ..+|...+.....|.||...
T Consensus        84 vli~vFDves~e~~~D~~~yqk~Le~ll--------------------------------~~SP~AkiF~l~hKmDLv~~  131 (295)
T KOG3886|consen   84 VLIYVFDVESREMEKDFHYYQKCLEALL--------------------------------QNSPEAKIFCLLHKMDLVQE  131 (295)
T ss_pred             eeeeeeeccchhhhhhHHHHHHHHHHHH--------------------------------hcCCcceEEEEEeechhccc
Confidence            999999998765433443   2333332                                34577777888899998753

>PRK00098 GTPase RsgA; Reviewed

Probab=97.92  E-value=3.1e-05  Score=83.41  Aligned_cols=86  Identities=19%  Similarity=0.145  Sum_probs=61.9

Q ss_pred             hhccccEEEEEeecCCCCchhhh-HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCC
Q psy17467         76 YYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTD  154 (730)
Q Consensus        76 ~~r~ADaIILVyDvtd~eSfe~L-~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~D  154 (730)
                      ...++|++++|+|++++.++..+ ..|+..+..                                  .+.|+++|+||+|
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~----------------------------------~~ip~iIVlNK~D  122 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----------------------------------NGIKPIIVLNKID  122 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----------------------------------CCCCEEEEEEhHH
Confidence            35899999999999998776554 567666532                                  3567788888888


Q ss_pred             cchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCC
Q psy17467        155 LDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKA  234 (730)
Q Consensus       155 L~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAkt  234 (730)
                      +.++..                                                   ..++..+..+..|.+++++||++
T Consensus       123 L~~~~~---------------------------------------------------~~~~~~~~~~~~g~~v~~vSA~~  151 (298)
T PRK00098        123 LLDDLE---------------------------------------------------EARELLALYRAIGYDVLELSAKE  151 (298)
T ss_pred             cCCCHH---------------------------------------------------HHHHHHHHHHHCCCeEEEEeCCC
Confidence            852110                                                   01223344556788999999999


Q ss_pred             CCChHHHHHHHH
Q psy17467        235 SDNVEKLFMQIA  246 (730)
Q Consensus       235 G~GVeeLFe~Li  246 (730)
                      |.|++++++.+.
T Consensus       152 g~gi~~L~~~l~  163 (298)
T PRK00098        152 GEGLDELKPLLA  163 (298)
T ss_pred             CccHHHHHhhcc
Confidence            999999998763

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.92  E-value=3.8e-05  Score=82.28  Aligned_cols=87  Identities=20%  Similarity=0.186  Sum_probs=64.6

Q ss_pred             hhhccccEEEEEeecCCCC-chhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCC
Q psy17467         75 SYYRSAHALILVYDISCQP-TFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKT  153 (730)
Q Consensus        75 ~~~r~ADaIILVyDvtd~e-Sfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~  153 (730)
                      ..+.++|++++|+|++++. ++..+.+|+..+..                                  .+.|+++|.||+
T Consensus        74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----------------------------------~~ip~iIVlNK~  119 (287)
T cd01854          74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----------------------------------AGIEPVIVLTKA  119 (287)
T ss_pred             eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----------------------------------cCCCEEEEEEHH
Confidence            3488999999999999988 88888888877643                                  346777888888


Q ss_pred             CcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecC
Q psy17467        154 DLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAK  233 (730)
Q Consensus       154 DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAk  233 (730)
                      ||.++..                                                    ...........|.+++++||+
T Consensus       120 DL~~~~~----------------------------------------------------~~~~~~~~~~~g~~v~~vSA~  147 (287)
T cd01854         120 DLLDDEE----------------------------------------------------EELELVEALALGYPVLAVSAK  147 (287)
T ss_pred             HCCChHH----------------------------------------------------HHHHHHHHHhCCCeEEEEECC
Confidence            8853210                                                    011223344578899999999


Q ss_pred             CCCChHHHHHHHHH
Q psy17467        234 ASDNVEKLFMQIAA  247 (730)
Q Consensus       234 tG~GVeeLFe~Li~  247 (730)
                      +|.|+++++..+..
T Consensus       148 ~g~gi~~L~~~L~~  161 (287)
T cd01854         148 TGEGLDELREYLKG  161 (287)
T ss_pred             CCccHHHHHhhhcc
Confidence            99999999887753

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd01858 NGP_1 NGP-1

Probab=97.91  E-value=2.5e-05  Score=75.52  Aligned_cols=56  Identities=14%  Similarity=0.241  Sum_probs=38.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCc
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ   66 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~   66 (730)
                      .++|+++|.||||||||+|++.+....... ++.|.+.....+..++   .+.++||||.
T Consensus       102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~liDtPGi  157 (157)
T cd01858         102 QISVGFIGYPNVGKSSIINTLRSKKVCKVA-PIPGETKVWQYITLMK---RIYLIDCPGV  157 (157)
T ss_pred             ceEEEEEeCCCCChHHHHHHHhcCCceeeC-CCCCeeEeEEEEEcCC---CEEEEECcCC
Confidence            468999999999999999999986553322 3333333333444332   2679999983

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>TIGR00092 GTP-binding protein YchF

Probab=97.91  E-value=3.1e-05  Score=85.74  Aligned_cols=84  Identities=17%  Similarity=0.037  Sum_probs=65.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCe---------------EEEEEEEeCCCchhhhh
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNE---------------RIKLQIWDTAGQERFRS   71 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~---------------~v~LqLwDTpG~e~~~s   71 (730)
                      +++.|+|.||||||||++.+++... ....+|..+.+.....+.+.+.               ...+++.|+||...-.+
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999999887 6666677767777777777553               24689999999654322


Q ss_pred             -------hhHhhhccccEEEEEeecCC
Q psy17467         72 -------ITQSYYRSAHALILVYDISC   91 (730)
Q Consensus        72 -------l~~~~~r~ADaIILVyDvtd   91 (730)
                             -.-..++++|+++.|.|..+
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~  109 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCFE  109 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence                   22345889999999999854

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG0458|consensus

Probab=97.91  E-value=7.6e-05  Score=85.48  Aligned_cols=86  Identities=21%  Similarity=0.238  Sum_probs=61.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcC--------------------CCCCC---------CCCcceeeEEEEEEEeCCeEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQG--------------------VFPPG---------QGATIGVDFMIKTVEINNERI   56 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~--------------------~f~~~---------~~pTig~d~~~~~i~vdg~~v   56 (730)
                      ..+.++++|.-++|||||+-+++..                    +..-.         ....-|++...++..++-...
T Consensus       176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~  255 (603)
T KOG0458|consen  176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK  255 (603)
T ss_pred             cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence            4588999999999999999988641                    11100         012233444455555666668


Q ss_pred             EEEEEeCCCchhhhhhhHhhhccccEEEEEeecCC
Q psy17467         57 KLQIWDTAGQERFRSITQSYYRSAHALILVYDISC   91 (730)
Q Consensus        57 ~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd   91 (730)
                      .+.|.|.||+.+|-.-.-.-...||+.|||.|++-
T Consensus       256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~  290 (603)
T KOG0458|consen  256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST  290 (603)
T ss_pred             eEEEecCCCccccchhhhccccccceEEEEEECCc
Confidence            89999999998887655566778999999999864

>KOG0468|consensus

Probab=97.90  E-value=3.3e-05  Score=89.11  Aligned_cols=97  Identities=24%  Similarity=0.295  Sum_probs=70.7

Q ss_pred             CCCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCC---------Cc------ceeeEE--EEEEE---eCCeEEEEEE
Q psy17467          1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQG---------AT------IGVDFM--IKTVE---INNERIKLQI   60 (730)
Q Consensus         1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~---------pT------ig~d~~--~~~i~---vdg~~v~LqL   60 (730)
                      |...+...+|.++|.-+.|||+|+..|.....+....         .+      -|....  ..++-   .+++.+.+++
T Consensus       122 ~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~ni  201 (971)
T KOG0468|consen  122 MDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNI  201 (971)
T ss_pred             ccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeee
Confidence            4566778899999999999999999998654332211         10      011111  11111   2577889999


Q ss_pred             EeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhh
Q psy17467         61 WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDC   97 (730)
Q Consensus        61 wDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~   97 (730)
                      .||||+-.|..-....++-+|++++|+|+.+.-.+..
T Consensus       202 lDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt  238 (971)
T KOG0468|consen  202 LDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT  238 (971)
T ss_pred             ecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeH
Confidence            9999999888877888999999999999998877754

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.87  E-value=2.8e-05  Score=77.40  Aligned_cols=55  Identities=22%  Similarity=0.387  Sum_probs=39.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCc
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ   66 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~   66 (730)
                      .++|+++|.||||||||+|++++... .....|.+  +.....+.++.   .+.++||||.
T Consensus       117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~--T~~~~~~~~~~---~~~l~DtPGi  172 (172)
T cd04178         117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGV--TKSMQEVHLDK---KVKLLDSPGI  172 (172)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCe--EcceEEEEeCC---CEEEEECcCC
Confidence            47999999999999999999998654 33333433  34444444443   4889999983

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01859 MJ1464 MJ1464

Probab=97.86  E-value=3.3e-05  Score=74.33  Aligned_cols=57  Identities=25%  Similarity=0.261  Sum_probs=40.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCc
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ   66 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~   66 (730)
                      ...+++++|.+|||||||+|++.+... ..+.++.|.+.....+..++   .+.+|||||.
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpGi  156 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPGV  156 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcCC
Confidence            357899999999999999999996553 33445666544333333333   5899999983

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=97.86  E-value=1.8e-05  Score=87.62  Aligned_cols=82  Identities=12%  Similarity=0.205  Sum_probs=42.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcc---eeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhh-----h
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATI---GVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSY-----Y   77 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTi---g~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~-----~   77 (730)
                      ..++|+|+|.+|+|||||||.|.+-.-.......+   +.+.......... .-.+.+||+||...-.-....|     +
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~-~pnv~lWDlPG~gt~~f~~~~Yl~~~~~  112 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK-FPNVTLWDLPGIGTPNFPPEEYLKEVKF  112 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC-CCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence            45899999999999999999997632221111111   1111111111111 1138999999964332223333     5


Q ss_pred             ccccEEEEEee
Q psy17467         78 RSAHALILVYD   88 (730)
Q Consensus        78 r~ADaIILVyD   88 (730)
                      ...|.+|++.+
T Consensus       113 ~~yD~fiii~s  123 (376)
T PF05049_consen  113 YRYDFFIIISS  123 (376)
T ss_dssp             GG-SEEEEEES
T ss_pred             cccCEEEEEeC
Confidence            57899888877

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>cd01856 YlqF YlqF

Probab=97.85  E-value=3.1e-05  Score=76.07  Aligned_cols=57  Identities=26%  Similarity=0.342  Sum_probs=41.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCc
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ   66 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~   66 (730)
                      ..++++++|.+|||||||+|++++..+... .+..+.+.....+.++   ..+.+|||||.
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            347899999999999999999998776422 2333334444555554   34789999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG1532|consensus

Probab=97.85  E-value=5.8e-05  Score=79.90  Aligned_cols=32  Identities=13%  Similarity=0.230  Sum_probs=26.7

Q ss_pred             CCeEEEEecCCCCChHHHHHHHHHHHHHHHHH
Q psy17467        224 DMYYLETSAKASDNVEKLFMQIAAELMEKLAE  255 (730)
Q Consensus       224 g~~fvEtSAktG~GVeeLFe~Li~~l~e~~~~  255 (730)
                      ++..+-|||.+|.|.+++|..+-..+.+....
T Consensus       238 ~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~  269 (366)
T KOG1532|consen  238 SLRTVGVSSVTGEGFDDFFTAVDESVDEYEEE  269 (366)
T ss_pred             hCceEEEecccCCcHHHHHHHHHHHHHHHHHH
Confidence            56789999999999999999998877665443

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.82  E-value=0.00017  Score=77.82  Aligned_cols=163  Identities=18%  Similarity=0.158  Sum_probs=97.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcC---CCCCCCCCcceeeEE----------------EEEE----EeC----CeEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQG---VFPPGQGATIGVDFM----------------IKTV----EIN----NERIKL   58 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~---~f~~~~~pTig~d~~----------------~~~i----~vd----g~~v~L   58 (730)
                      ..++|-++|.-.-|||||...+.+-   .+.......+++...                ....    ..-    .-...+
T Consensus         9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V   88 (415)
T COG5257           9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV   88 (415)
T ss_pred             cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence            5799999999999999999999862   111110000000000                0000    000    112458


Q ss_pred             EEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccc
Q psy17467         59 QIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLC  138 (730)
Q Consensus        59 qLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~  138 (730)
                      .|+|.||++-.-.---.-..-.|+.+||++.+.+.---.-++.+..+...                          |+  
T Consensus        89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi--------------------------gi--  140 (415)
T COG5257          89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII--------------------------GI--  140 (415)
T ss_pred             EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh--------------------------cc--
Confidence            89999999754332111122349999999998754333333333232211                          11  


Q ss_pred             cCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHH
Q psy17467        139 TVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGED  218 (730)
Q Consensus       139 ~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~  218 (730)
                           .-+++|-||.||.+.+..+                                                ...++..+
T Consensus       141 -----k~iiIvQNKIDlV~~E~Al------------------------------------------------E~y~qIk~  167 (415)
T COG5257         141 -----KNIIIVQNKIDLVSRERAL------------------------------------------------ENYEQIKE  167 (415)
T ss_pred             -----ceEEEEecccceecHHHHH------------------------------------------------HHHHHHHH
Confidence                 2357778888887655432                                                23456666


Q ss_pred             HHHh---cCCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467        219 FAKR---HDMYYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       219 lak~---lg~~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                      |.+-   -+++++.+||..+.||+.+++.|.+.+
T Consensus       168 FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I  201 (415)
T COG5257         168 FVKGTVAENAPIIPISAQHKANIDALIEAIEKYI  201 (415)
T ss_pred             HhcccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence            6653   367999999999999999999998877

>PRK12288 GTPase RsgA; Reviewed

Probab=97.78  E-value=8.2e-05  Score=81.99  Aligned_cols=88  Identities=15%  Similarity=0.193  Sum_probs=64.7

Q ss_pred             hccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467         77 YRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD  156 (730)
Q Consensus        77 ~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~  156 (730)
                      ..++|.+++|++++...++..+..|+..+..                                  .++|+++|+||+||.
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~----------------------------------~~i~~VIVlNK~DL~  163 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET----------------------------------LGIEPLIVLNKIDLL  163 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh----------------------------------cCCCEEEEEECccCC
Confidence            4679999999999989999999999765421                                  456778888999986


Q ss_pred             hhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCC
Q psy17467        157 EDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASD  236 (730)
Q Consensus       157 ~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~  236 (730)
                      +....                                                . ..++..+..+..|++++++||++|.
T Consensus       164 ~~~~~------------------------------------------------~-~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        164 DDEGR------------------------------------------------A-FVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             CcHHH------------------------------------------------H-HHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            42210                                                0 0112223345678899999999999


Q ss_pred             ChHHHHHHHHH
Q psy17467        237 NVEKLFMQIAA  247 (730)
Q Consensus       237 GVeeLFe~Li~  247 (730)
                      |++++++.+..
T Consensus       195 GideL~~~L~~  205 (347)
T PRK12288        195 GLEELEAALTG  205 (347)
T ss_pred             CHHHHHHHHhh
Confidence            99999998864

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=97.75  E-value=0.0002  Score=79.88  Aligned_cols=109  Identities=14%  Similarity=0.175  Sum_probs=71.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc--C--------------CCCCCCC----CcceeeEEEEEEEeCCeEEEEEEEeCCCchh
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ--G--------------VFPPGQG----ATIGVDFMIKTVEINNERIKLQIWDTAGQER   68 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~--~--------------~f~~~~~----pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~   68 (730)
                      ..+|+-.|.+|||||..+++-  +              .+..+.+    -.-|+...+..++++-....++|.||||+++
T Consensus        14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeD   93 (528)
T COG4108          14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHED   93 (528)
T ss_pred             ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccc
Confidence            468999999999999999762  1              1111111    1123344444555555558899999999999


Q ss_pred             hhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEecc
Q psy17467         69 FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGT  121 (730)
Q Consensus        69 ~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k  121 (730)
                      |+.-....+.-+|.+|.|+|+...-.-+.++ +++-++   -.+.||+.+.||
T Consensus        94 FSEDTYRtLtAvDsAvMVIDaAKGiE~qT~K-LfeVcr---lR~iPI~TFiNK  142 (528)
T COG4108          94 FSEDTYRTLTAVDSAVMVIDAAKGIEPQTLK-LFEVCR---LRDIPIFTFINK  142 (528)
T ss_pred             cchhHHHHHHhhheeeEEEecccCccHHHHH-HHHHHh---hcCCceEEEeec
Confidence            9887777888999999999988754443332 333322   124566665555

>KOG1491|consensus

Probab=97.74  E-value=6e-05  Score=81.73  Aligned_cols=85  Identities=21%  Similarity=0.187  Sum_probs=67.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeC---------------CeEEEEEEEeCCCchhhhh
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN---------------NERIKLQIWDTAGQERFRS   71 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vd---------------g~~v~LqLwDTpG~e~~~s   71 (730)
                      .+++-|||.||||||||+|.+++........|..++++....+.+.               .....|+++|++|.-+-.+
T Consensus        20 ~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs   99 (391)
T KOG1491|consen   20 NLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGAS   99 (391)
T ss_pred             cceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcc
Confidence            4799999999999999999999998888888999888877776653               2356799999998644332


Q ss_pred             ----hhHh---hhccccEEEEEeecCC
Q psy17467         72 ----ITQS---YYRSAHALILVYDISC   91 (730)
Q Consensus        72 ----l~~~---~~r~ADaIILVyDvtd   91 (730)
                          +...   -+|.+|+++-|.++.+
T Consensus       100 ~G~GLGN~FLs~iR~vDaifhVVr~f~  126 (391)
T KOG1491|consen  100 AGEGLGNKFLSHIRHVDAIFHVVRAFE  126 (391)
T ss_pred             cCcCchHHHHHhhhhccceeEEEEecC
Confidence                3333   3788999999988765

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=97.73  E-value=0.00011  Score=81.36  Aligned_cols=95  Identities=19%  Similarity=0.226  Sum_probs=67.4

Q ss_pred             chhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCc
Q psy17467         66 QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALA  145 (730)
Q Consensus        66 ~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~P  145 (730)
                      .++|..+...+++.++++++|+|+.+..     ..|.+++.+..                                .+.|
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~--------------------------------~~~p   92 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV--------------------------------GGNP   92 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh--------------------------------CCCC
Confidence            4678888888999999999999987643     34556654432                                2457


Q ss_pred             eEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHH----HHHH
Q psy17467        146 TALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGE----DFAK  221 (730)
Q Consensus       146 VVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~----~lak  221 (730)
                      +++|+||+|+.+                                                   +.+..++..    ++++
T Consensus        93 iilV~NK~DLl~---------------------------------------------------k~~~~~~~~~~l~~~~k  121 (360)
T TIGR03597        93 VLLVGNKIDLLP---------------------------------------------------KSVNLSKIKEWMKKRAK  121 (360)
T ss_pred             EEEEEEchhhCC---------------------------------------------------CCCCHHHHHHHHHHHHH
Confidence            788888888742                                                   122223333    3466


Q ss_pred             hcCC---eEEEEecCCCCChHHHHHHHHHH
Q psy17467        222 RHDM---YYLETSAKASDNVEKLFMQIAAE  248 (730)
Q Consensus       222 ~lg~---~fvEtSAktG~GVeeLFe~Li~~  248 (730)
                      ..|+   .++++||++|.|++++|+.+.+.
T Consensus       122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            6776   48999999999999999988653

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=97.71  E-value=0.00024  Score=72.17  Aligned_cols=51  Identities=20%  Similarity=0.132  Sum_probs=33.6

Q ss_pred             cccccccccC-CCCChHHHHHHHHhc--CCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467        199 MARNKIDRED-REIPTEVGEDFAKRH--DMYYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       199 vVgNK~DL~~-R~Vs~ee~~~lak~l--g~~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                      +|.||.|+.. -..+-+...+-+++.  +++|+++|+++|+|++++++++....
T Consensus       147 lVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         147 LVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             EEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            4556666642 122224444444443  57999999999999999998886543

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=97.71  E-value=8.6e-05  Score=79.44  Aligned_cols=57  Identities=19%  Similarity=0.365  Sum_probs=41.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCch
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE   67 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e   67 (730)
                      ..++|+++|.||||||||+|++++... .....|.+  +.....+.+++   .+.++||||.-
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~--T~~~~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGV--TKAQQWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCe--EEEEEEEEeCC---cEEEEECCCcC
Confidence            458999999999999999999998765 33333433  44444555543   47899999973

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=97.70  E-value=7.5e-05  Score=79.43  Aligned_cols=57  Identities=23%  Similarity=0.332  Sum_probs=41.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCc
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ   66 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~   66 (730)
                      ..++|+++|.||||||||+|++.+....... +..|.+.....+.++.   .+.++||||.
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeecceEEEEeCC---CEEEEECCCc
Confidence            3588999999999999999999986643321 3334444455555543   4789999997

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=97.66  E-value=0.00028  Score=83.95  Aligned_cols=112  Identities=18%  Similarity=0.202  Sum_probs=76.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcC--CCCC----C----C--------CCcceeeEEEEEEEeCCeEEEEEEEeCCCc
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQG--VFPP----G----Q--------GATIGVDFMIKTVEINNERIKLQIWDTAGQ   66 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~--~f~~----~----~--------~pTig~d~~~~~i~vdg~~v~LqLwDTpG~   66 (730)
                      +..-+|.|+|.-.+|||||..+++-.  ....    .    .        ...+++.....++.+.+ .+.++++||||+
T Consensus         8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPGH   86 (697)
T COG0480           8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPGH   86 (697)
T ss_pred             ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCCc
Confidence            34568999999999999999998742  1110    0    0        11223233333444553 588999999999


Q ss_pred             hhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEecc
Q psy17467         67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGT  121 (730)
Q Consensus        67 e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k  121 (730)
                      -+|..-....++-+|++|+|+|+...-..+.-.-|....+    .+.|.+++.||
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~----~~vp~i~fiNK  137 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK----YGVPRILFVNK  137 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh----cCCCeEEEEEC
Confidence            9999988999999999999999988766665555554432    23444444444

>cd01855 YqeH YqeH

Probab=97.59  E-value=9.9e-05  Score=73.49  Aligned_cols=54  Identities=22%  Similarity=0.346  Sum_probs=37.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC---------CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVF---------PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ   66 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f---------~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~   66 (730)
                      .+++++|.+|||||||+|.+.+...         .....|  |.+.....+.++.   .+.|+||||.
T Consensus       128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~~---~~~~~DtPG~  190 (190)
T cd01855         128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIP--GTTLDLIKIPLGN---GKKLYDTPGI  190 (190)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCC--CeeeeeEEEecCC---CCEEEeCcCC
Confidence            5799999999999999999997542         222333  3344444555543   4799999983

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.56  E-value=0.00034  Score=78.29  Aligned_cols=82  Identities=20%  Similarity=0.187  Sum_probs=55.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCC---CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFP---PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~---~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      |.-.|.-.-|||||+..+++..-.   ....-.++.|.........+  ..+.|+|+||++++-+-.-.-+...|..+||
T Consensus         3 i~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alLv   80 (447)
T COG3276           3 IGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALLV   80 (447)
T ss_pred             EEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEEE
Confidence            566777888999999999875432   22222333333333333333  5799999999998766555556688999999


Q ss_pred             eecCCCC
Q psy17467         87 YDISCQP   93 (730)
Q Consensus        87 yDvtd~e   93 (730)
                      +|.++.-
T Consensus        81 V~~deGl   87 (447)
T COG3276          81 VAADEGL   87 (447)
T ss_pred             EeCccCc
Confidence            9997643

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=97.49  E-value=0.00035  Score=74.94  Aligned_cols=60  Identities=27%  Similarity=0.480  Sum_probs=41.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCC----------CCcceeeEEEEEEEeCCeEEEEEEEeCCC
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQ----------GATIGVDFMIKTVEINNERIKLQIWDTAG   65 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~----------~pTig~d~~~~~i~vdg~~v~LqLwDTpG   65 (730)
                      ..++|+|+|.+|+|||||+|.|++.......          .++.........+.-++..+.+.++||||
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpG   72 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPG   72 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCC
Confidence            4689999999999999999999986543321          12333334444555578889999999998

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.48  E-value=0.00018  Score=78.52  Aligned_cols=58  Identities=22%  Similarity=0.318  Sum_probs=43.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCch
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE   67 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e   67 (730)
                      ..+++.|+|-||||||||||+|.+..... ..+..|.+.....+..+..   +.++||||.-
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~-~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii  188 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAK-TSNRPGTTKGIQWIKLDDG---IYLLDTPGII  188 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhccccee-eCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence            35789999999999999999999876532 2244465666666666553   8999999963

>KOG4273|consensus

Probab=97.47  E-value=0.00055  Score=71.65  Aligned_cols=96  Identities=19%  Similarity=0.284  Sum_probs=60.8

Q ss_pred             EEEEEcCCCC--CHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          9 KVVLVGNAGV--GKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         9 KIvVLG~pnV--GKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      -++|+|.+||  ||-+|+.|+....|.....+.-..++...++.-.-....+.+.=.+-.+++.-..........++++|
T Consensus         6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vmv   85 (418)
T KOG4273|consen    6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVMV   85 (418)
T ss_pred             eEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEEE
Confidence            3689999999  99999999999888766544444455555543222111222222221122111111222345799999


Q ss_pred             eecCCCCchhhhHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLRE  104 (730)
Q Consensus        87 yDvtd~eSfe~L~~wlee  104 (730)
                      ||++....+..++.|+..
T Consensus        86 fdlse~s~l~alqdwl~h  103 (418)
T KOG4273|consen   86 FDLSEKSGLDALQDWLPH  103 (418)
T ss_pred             EeccchhhhHHHHhhccc
Confidence            999999999999999875

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.47  E-value=0.0013  Score=70.77  Aligned_cols=55  Identities=15%  Similarity=0.146  Sum_probs=38.1

Q ss_pred             CCccccccccccccCC-CCChHHHHHHHHhc--CCeEEEEecCCCCChHHHHHHHHHH
Q psy17467        194 NNIHCMARNKIDREDR-EIPTEVGEDFAKRH--DMYYLETSAKASDNVEKLFMQIAAE  248 (730)
Q Consensus       194 ~~~~ivVgNK~DL~~R-~Vs~ee~~~lak~l--g~~fvEtSAktG~GVeeLFe~Li~~  248 (730)
                      ...-++|.||+|+... ....+...+..+..  +++++++||++|+|++++.++|...
T Consensus       230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            4456789999998531 11223333333333  5789999999999999999998763

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=97.43  E-value=0.00033  Score=67.73  Aligned_cols=56  Identities=20%  Similarity=0.310  Sum_probs=38.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCc
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ   66 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~   66 (730)
                      ...+++++|.+|||||||+|.+++... .....+..+...  ..+..+   ..+.++||||.
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~--~~~~~~---~~~~liDtPG~  155 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ--QEVKLD---NKIKLLDTPGI  155 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce--EEEEec---CCEEEEECCCC
Confidence            347899999999999999999998653 333334443333  233333   24899999983

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=97.34  E-value=0.0016  Score=68.95  Aligned_cols=25  Identities=24%  Similarity=0.287  Sum_probs=21.6

Q ss_pred             CeEEEEecCCCCChHHHHHHHHHHH
Q psy17467        225 MYYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       225 ~~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                      -+++.|||.+|.||+++++.|.+..
T Consensus       205 ppV~~tsA~~~~Gi~eL~~~i~~~~  229 (266)
T PF03308_consen  205 PPVLKTSALEGEGIDELWEAIDEHR  229 (266)
T ss_dssp             -EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4899999999999999999887644

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG2486|consensus

Probab=97.18  E-value=0.00089  Score=71.31  Aligned_cols=58  Identities=16%  Similarity=0.148  Sum_probs=38.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCC-CCcceeeEEEEEEEeCCeEEEEEEEeCCC
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQ-GATIGVDFMIKTVEINNERIKLQIWDTAG   65 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~-~pTig~d~~~~~i~vdg~~v~LqLwDTpG   65 (730)
                      +....++++|..|||||||+|.++........ .+..|.+.......++   -.+.++|.||
T Consensus       134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG  192 (320)
T KOG2486|consen  134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPG  192 (320)
T ss_pred             CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCC
Confidence            45578999999999999999999875543322 2233422222222223   3577899999

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=97.15  E-value=0.0012  Score=68.37  Aligned_cols=85  Identities=16%  Similarity=0.143  Sum_probs=53.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcC--CCCCCCC---CcceeeEEEEEEEeC-CeEEEEEEEeCCCchhhhh------hhH
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQG--VFPPGQG---ATIGVDFMIKTVEIN-NERIKLQIWDTAGQERFRS------ITQ   74 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~--~f~~~~~---pTig~d~~~~~i~vd-g~~v~LqLwDTpG~e~~~s------l~~   74 (730)
                      ..-|+|+|++++|||+|+|++++.  .|.....   .|.|+  ......+. +....+.++||+|......      ...
T Consensus         7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi--~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~   84 (224)
T cd01851           7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGI--WMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL   84 (224)
T ss_pred             EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccce--EEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence            345899999999999999999998  7654322   23332  22222221 2346799999999753322      112


Q ss_pred             hhhcc--ccEEEEEeecCCCC
Q psy17467         75 SYYRS--AHALILVYDISCQP   93 (730)
Q Consensus        75 ~~~r~--ADaIILVyDvtd~e   93 (730)
                      ..+..  +|++|+..+.+...
T Consensus        85 ~~l~~llss~~i~n~~~~~~~  105 (224)
T cd01851          85 FALATLLSSVLIYNSWETILG  105 (224)
T ss_pred             HHHHHHHhCEEEEeccCcccH
Confidence            22333  78888887765443

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=97.13  E-value=0.0019  Score=61.53  Aligned_cols=23  Identities=9%  Similarity=0.088  Sum_probs=19.2

Q ss_pred             HhhhccccEEEEEeecCCCCchh
Q psy17467         74 QSYYRSAHALILVYDISCQPTFD   96 (730)
Q Consensus        74 ~~~~r~ADaIILVyDvtd~eSfe   96 (730)
                      ...+.++|++++|+|++++.+.+
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~   28 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFR   28 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccC
Confidence            35678999999999999887655

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG1954|consensus

Probab=97.09  E-value=0.0054  Score=67.58  Aligned_cols=147  Identities=17%  Similarity=0.196  Sum_probs=92.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCcceeeEEEEEEEe------CCeE--------------------------
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPG-QGATIGVDFMIKTVEI------NNER--------------------------   55 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~-~~pTig~d~~~~~i~v------dg~~--------------------------   55 (730)
                      -|+++|.-..||||+++.++.++|+.. ..|..+.++....+.=      .|..                          
T Consensus        60 mill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~cs  139 (532)
T KOG1954|consen   60 MILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMCS  139 (532)
T ss_pred             eEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHHh
Confidence            489999999999999999999988743 2233333444433311      1110                          


Q ss_pred             -------EEEEEEeCCCch-----------hhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEE
Q psy17467         56 -------IKLQIWDTAGQE-----------RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVL  117 (730)
Q Consensus        56 -------v~LqLwDTpG~e-----------~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVL  117 (730)
                             -.+.|+||||.-           +|......+...+|.|||+||.-...--+...+.+..+   .+..-.+-+
T Consensus       140 qmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aL---kG~EdkiRV  216 (532)
T KOG1954|consen  140 QLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDAL---KGHEDKIRV  216 (532)
T ss_pred             cCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHh---hCCcceeEE
Confidence                   148899999842           34445567788999999999976432222222233333   333344556


Q ss_pred             EeccCchhhHHHHHhhhccc------ccCCCCCceEEeccCCCcchh
Q psy17467        118 VGGTSGLKIVNEMASAAGLL------CTVDPALATALASDKTDLDED  158 (730)
Q Consensus       118 Vg~k~dl~~~~~i~~~~g~~------~~~~~~~PVVLVGNK~DL~~~  158 (730)
                      |.||.|.=..++++.-+|-.      -...|..+-|.+|.=||..-.
T Consensus       217 VLNKADqVdtqqLmRVyGALmWslgkv~nTpev~rvYigSfw~hPl~  263 (532)
T KOG1954|consen  217 VLNKADQVDTQQLMRVYGALMWSLGKVMNTPEVSRVYIGSFWDHPLQ  263 (532)
T ss_pred             EeccccccCHHHHHHHHHHHHHhhhhhcCCCcceeEEeeccccCccc
Confidence            66887766666665555532      235677888888888886543

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=97.07  E-value=0.005  Score=66.17  Aligned_cols=88  Identities=18%  Similarity=0.166  Sum_probs=60.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcC----------CCCC-CCC---CcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQG----------VFPP-GQG---ATIGVDFMIKTVEINNERIKLQIWDTAGQERFR   70 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~----------~f~~-~~~---pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~   70 (730)
                      +.-++|..+|.-+-|||||...++..          .|.. ...   ..-|++.....+.++-....+-.+|+||+.+|-
T Consensus        10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv   89 (394)
T COG0050          10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV   89 (394)
T ss_pred             CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence            45689999999999999999887641          1110 001   123444555566665444667889999998876


Q ss_pred             hhhHhhhccccEEEEEeecCCC
Q psy17467         71 SITQSYYRSAHALILVYDISCQ   92 (730)
Q Consensus        71 sl~~~~~r~ADaIILVyDvtd~   92 (730)
                      .---.-..+.|+.|||.+++|.
T Consensus        90 KNMItgAaqmDgAILVVsA~dG  111 (394)
T COG0050          90 KNMITGAAQMDGAILVVAATDG  111 (394)
T ss_pred             HHHhhhHHhcCccEEEEEcCCC
Confidence            5333344578999999999983

>cd01856 YlqF YlqF

Probab=97.02  E-value=0.0034  Score=61.74  Aligned_cols=26  Identities=27%  Similarity=0.203  Sum_probs=22.6

Q ss_pred             CCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467        224 DMYYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       224 g~~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                      +..++.+||+++.|++++.+.+...+
T Consensus        75 ~~~vi~iSa~~~~gi~~L~~~l~~~l  100 (171)
T cd01856          75 GEKVLFVNAKSGKGVKKLLKAAKKLL  100 (171)
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHH
Confidence            45689999999999999999988765

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PRK12288 GTPase RsgA; Reviewed

Probab=97.00  E-value=0.0011  Score=73.05  Aligned_cols=58  Identities=21%  Similarity=0.365  Sum_probs=35.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCC-CCCCc---ce--eeEEEEEEEeCCeEEEEEEEeCCCchhhh
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPP-GQGAT---IG--VDFMIKTVEINNERIKLQIWDTAGQERFR   70 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~-~~~pT---ig--~d~~~~~i~vdg~~v~LqLwDTpG~e~~~   70 (730)
                      ++|+|.+|||||||+|+|++..... ...+.   .|  ++.....+.+.+.   ..|+||||...+.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence            7899999999999999999754321 11111   01  1222333444322   2489999987653

>KOG1143|consensus

Probab=96.98  E-value=0.0038  Score=68.73  Aligned_cols=181  Identities=18%  Similarity=0.193  Sum_probs=100.2

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCC-----------------------CCcceeeEEEEEEEeC--------
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQ-----------------------GATIGVDFMIKTVEIN--------   52 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~-----------------------~pTig~d~~~~~i~vd--------   52 (730)
                      +...++++++|...+|||||+--++.+......                       ...+|.+..-+.+.|.        
T Consensus       164 qfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi  243 (591)
T KOG1143|consen  164 QFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEI  243 (591)
T ss_pred             cceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHH
Confidence            446789999999999999999877765433221                       1122222222222221        


Q ss_pred             --CeEEEEEEEeCCCchhhhhhhHhhhc--cccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHH
Q psy17467         53 --NERIKLQIWDTAGQERFRSITQSYYR--SAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVN  128 (730)
Q Consensus        53 --g~~v~LqLwDTpG~e~~~sl~~~~~r--~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~  128 (730)
                        ...-.+.++|.+|+.+|....-.-+.  ..|..++|.++........ ++.+-.+                       
T Consensus       244 ~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~-----------------------  299 (591)
T KOG1143|consen  244 VEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLI-----------------------  299 (591)
T ss_pred             HhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHH-----------------------
Confidence              11235889999999887654332222  3578888888765433311 2222222                       


Q ss_pred             HHHhhhcccccCCCCCceEEeccCCCcchhhHHH---HHHHHhhhhhcccccccchhhhhhhcccCCcCCcccccccccc
Q psy17467        129 EMASAAGLLCTVDPALATALASDKTDLDEDEHVL---ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKID  205 (730)
Q Consensus       129 ~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~---~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~D  205 (730)
                                 ..-++|.+++.+|.|+.+.....   ..+..                   .....-......+|-||.|
T Consensus       300 -----------~AL~iPfFvlvtK~Dl~~~~~~~~tv~~l~n-------------------ll~~~Gc~kvp~~Vt~~dd  349 (591)
T KOG1143|consen  300 -----------AALNIPFFVLVTKMDLVDRQGLKKTVKDLSN-------------------LLAKAGCTKVPKRVTTKDD  349 (591)
T ss_pred             -----------HHhCCCeEEEEEeeccccchhHHHHHHHHHH-------------------HHhhcCccccceEeechHH
Confidence                       12468899999999998652211   10000                   0001112223334445443


Q ss_pred             ccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467        206 REDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       206 L~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~  244 (730)
                      -    |  ..+++++...-.+++-+|+.+|+|++-+-..
T Consensus       350 A----v--~Aaq~~~s~nivPif~vSsVsGegl~ll~~f  382 (591)
T KOG1143|consen  350 A----V--KAAQELCSGNIVPIFAVSSVSGEGLRLLRTF  382 (591)
T ss_pred             H----H--HHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence            2    1  2234444444458999999999998866443

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=96.97  E-value=0.0013  Score=72.74  Aligned_cols=56  Identities=18%  Similarity=0.287  Sum_probs=38.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC------CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVF------PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER   68 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f------~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~   68 (730)
                      .+|+++|.+|||||||+|++++...      .....|..  +.....+.+++   .+.++||||...
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgt--T~~~~~~~~~~---~~~l~DtPG~~~  216 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGT--TLDLIEIPLDD---GHSLYDTPGIIN  216 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCe--EeeEEEEEeCC---CCEEEECCCCCC
Confidence            4799999999999999999997432      22233433  33344555533   257999999753

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK13796 GTPase YqeH; Provisional

Probab=96.95  E-value=0.0011  Score=73.53  Aligned_cols=57  Identities=21%  Similarity=0.294  Sum_probs=37.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC----CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCch
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVF----PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE   67 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f----~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e   67 (730)
                      .++.++|.+|||||||+|+++....    ..+..+..|++.....+.+++.   ..++||||..
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence            4799999999999999999985321    1111122233344455555442   4799999974

>PRK12289 GTPase RsgA; Reviewed

Probab=96.94  E-value=0.0011  Score=73.30  Aligned_cols=57  Identities=26%  Similarity=0.330  Sum_probs=35.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCC-CCCc---ce--eeEEEEEEEeCCeEEEEEEEeCCCchhh
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPG-QGAT---IG--VDFMIKTVEINNERIKLQIWDTAGQERF   69 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~-~~pT---ig--~d~~~~~i~vdg~~v~LqLwDTpG~e~~   69 (730)
                      ++|+|.+|||||||+|+|++.....+ ..+.   -|  ++.....+...+..   .|+||||...+
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~  237 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQP  237 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccc
Confidence            79999999999999999997543221 1121   00  12233444443222   68999997543

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=96.94  E-value=0.0042  Score=60.03  Aligned_cols=29  Identities=14%  Similarity=0.036  Sum_probs=24.2

Q ss_pred             hcCCeEEEEecCCCCChHHHHHHHHHHHH
Q psy17467        222 RHDMYYLETSAKASDNVEKLFMQIAAELM  250 (730)
Q Consensus       222 ~lg~~fvEtSAktG~GVeeLFe~Li~~l~  250 (730)
                      ..+..++.+||++|.|++++.+.+.+...
T Consensus        57 ~~~~~ii~vSa~~~~gi~~L~~~i~~~~~   85 (155)
T cd01849          57 SYPTIPFKISATNGQGIEKKESAFTKQTN   85 (155)
T ss_pred             hCCceEEEEeccCCcChhhHHHHHHHHhH
Confidence            34567899999999999999999987654

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=96.88  E-value=0.0032  Score=79.52  Aligned_cols=120  Identities=18%  Similarity=0.207  Sum_probs=67.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCC------CCcceeeEEEEEEEeCCeEEEEEEEeCCCch--------hhhhhhHh
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQ------GATIGVDFMIKTVEINNERIKLQIWDTAGQE--------RFRSITQS   75 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~------~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e--------~~~sl~~~   75 (730)
                      .+|+|++|+||||++++- +-.|+...      ...++.+..+. .-+.+   .-.++||+|..        .....|..
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~-wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~  188 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCD-WWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG  188 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccc-eEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence            489999999999999987 44554321      11122122111 11222   24589999832        12234444


Q ss_pred             hh---------ccccEEEEEeecCCCCch--hhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCC
Q psy17467         76 YY---------RSAHALILVYDISCQPTF--DCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPAL  144 (730)
Q Consensus        76 ~~---------r~ADaIILVyDvtd~eSf--e~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~  144 (730)
                      ++         +..|+||+|+|+.+.-+-  +........++..                  +.++....|      ...
T Consensus       189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~r------------------l~el~~~lg------~~~  244 (1169)
T TIGR03348       189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQR------------------LQELREQLG------ARF  244 (1169)
T ss_pred             HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHH------------------HHHHHHHhC------CCC
Confidence            32         347999999999874322  2222222222221                  122333333      478


Q ss_pred             ceEEeccCCCcchh
Q psy17467        145 ATALASDKTDLDED  158 (730)
Q Consensus       145 PVVLVGNK~DL~~~  158 (730)
                      ||.|+.+|+|+...
T Consensus       245 PVYvv~Tk~Dll~G  258 (1169)
T TIGR03348       245 PVYLVLTKADLLAG  258 (1169)
T ss_pred             CEEEEEecchhhcC
Confidence            99999999998753

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=96.84  E-value=0.0075  Score=65.09  Aligned_cols=188  Identities=16%  Similarity=0.132  Sum_probs=92.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhh----HhhhccccEE
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSIT----QSYYRSAHAL   83 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~----~~~~r~ADaI   83 (730)
                      ..|-|-|.||||||||+..|...-..                  .|..+-+--+|.+....-.++.    +..-..+|-=
T Consensus        52 ~viGITG~PGaGKSTli~~L~~~l~~------------------~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~  113 (323)
T COG1703          52 HVIGITGVPGAGKSTLIEALGRELRE------------------RGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPG  113 (323)
T ss_pred             cEEEecCCCCCchHHHHHHHHHHHHH------------------CCcEEEEEEECCCCCCCCccccccHhhHHhhccCCC
Confidence            46889999999999999998743211                  1223444455544221111111    1111122444


Q ss_pred             EEEeecCCCCchhhhHHHHHHHHHHh-cccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         84 ILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        84 ILVyDvtd~eSfe~L~~wleeI~~~~-~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +|+=++.++.+.--+..--.++...+ ..+.-+|+|-+-+=..+.                   +-|.+-.|.       
T Consensus       114 vFiRs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQse-------------------v~I~~~aDt-------  167 (323)
T COG1703         114 VFIRSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSE-------------------VDIANMADT-------  167 (323)
T ss_pred             eEEeecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcch-------------------hHHhhhcce-------
Confidence            55666667777666544222222222 234444444322111100                   001111111       


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHH---HHHHH------hcCCeEEEEecC
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVG---EDFAK------RHDMYYLETSAK  233 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~---~~lak------~lg~~fvEtSAk  233 (730)
                            ++.+.+|..+-..+......    -..--++|.||.|+........+.   ..+..      .+.-+++.|||.
T Consensus       168 ------~~~v~~pg~GD~~Q~iK~Gi----mEiaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~  237 (323)
T COG1703         168 ------FLVVMIPGAGDDLQGIKAGI----MEIADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSAL  237 (323)
T ss_pred             ------EEEEecCCCCcHHHHHHhhh----hhhhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeec
Confidence                  12334454443333333322    233457788999964321111111   11111      112369999999


Q ss_pred             CCCChHHHHHHHHHHH
Q psy17467        234 ASDNVEKLFMQIAAEL  249 (730)
Q Consensus       234 tG~GVeeLFe~Li~~l  249 (730)
                      +|+||+++++.+.+-.
T Consensus       238 ~g~Gi~~L~~ai~~h~  253 (323)
T COG1703         238 EGEGIDELWDAIEDHR  253 (323)
T ss_pred             cCCCHHHHHHHHHHHH
Confidence            9999999999987655

>KOG1547|consensus

Probab=96.84  E-value=0.032  Score=58.67  Aligned_cols=61  Identities=25%  Similarity=0.461  Sum_probs=41.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCC---------CCCCcceeeEEEEEEEeCCeEEEEEEEeCCC
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPP---------GQGATIGVDFMIKTVEINNERIKLQIWDTAG   65 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~---------~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG   65 (730)
                      -+.++|.|||.+|.|||||+|.+.......         .+..|+++-.....+.-++...++.++||||
T Consensus        44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPG  113 (336)
T KOG1547|consen   44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPG  113 (336)
T ss_pred             cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCC
Confidence            356899999999999999999987543221         1122333333333444467777888999998

>cd01858 NGP_1 NGP-1

Probab=96.82  E-value=0.0045  Score=59.83  Aligned_cols=24  Identities=8%  Similarity=-0.076  Sum_probs=19.9

Q ss_pred             eEEEEecCCCCChHHHHHHHHHHH
Q psy17467        226 YYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       226 ~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                      ..+.+||+++.|++++.+.+....
T Consensus        71 ~~~~iSa~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          71 IAFHASINNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             EEEEeeccccccHHHHHHHHHHHH
Confidence            357899999999999998886543

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=96.79  E-value=0.0012  Score=65.45  Aligned_cols=58  Identities=24%  Similarity=0.314  Sum_probs=32.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCC-C-----CCcceeeEEEEEEEeCCeEEEEEEEeCCCchhh
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPG-Q-----GATIGVDFMIKTVEINNERIKLQIWDTAGQERF   69 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~-~-----~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~   69 (730)
                      -++++|.+|||||||+|.+.+.....+ .     ......+.....+..++.   -.++||||-..+
T Consensus        37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~  100 (161)
T PF03193_consen   37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSF  100 (161)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT-
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCcc
Confidence            479999999999999999997632111 0     000001112334444322   368999997654

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK13796 GTPase YqeH; Provisional

Probab=96.77  E-value=0.0065  Score=67.50  Aligned_cols=31  Identities=19%  Similarity=0.186  Sum_probs=25.1

Q ss_pred             HHHHhcCC---eEEEEecCCCCChHHHHHHHHHH
Q psy17467        218 DFAKRHDM---YYLETSAKASDNVEKLFMQIAAE  248 (730)
Q Consensus       218 ~lak~lg~---~fvEtSAktG~GVeeLFe~Li~~  248 (730)
                      .+++..|+   .++++||++|.|++++++.+.+.
T Consensus       124 ~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        124 QEAKELGLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             HHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            34566676   58999999999999999998653

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=96.73  E-value=0.0023  Score=67.26  Aligned_cols=57  Identities=23%  Similarity=0.293  Sum_probs=35.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCc-----ceeeEEEEEEEeCCeEEEEEEEeCCCchhh
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPG-QGAT-----IGVDFMIKTVEINNERIKLQIWDTAGQERF   69 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~-~~pT-----ig~d~~~~~i~vdg~~v~LqLwDTpG~e~~   69 (730)
                      .++++|.+|||||||+|++++.....+ ..+.     ..++.....+..++    -.|+||||...+
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~  184 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEF  184 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCcccc
Confidence            579999999999999999997533211 1111     00122233344433    269999997654

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=96.71  E-value=0.0037  Score=68.88  Aligned_cols=62  Identities=21%  Similarity=0.385  Sum_probs=46.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCC----------CCCcceeeEEEEEEEeCCeEEEEEEEeCCCc
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPG----------QGATIGVDFMIKTVEINNERIKLQIWDTAGQ   66 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~----------~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~   66 (730)
                      ...+.|.++|..|.|||||+|.|++......          ..+++........+.-+|..+.|.++||||-
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGf   92 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGF   92 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCc
Confidence            4678999999999999999999997622211          2355555555556666788889999999983

>KOG2655|consensus

Probab=96.68  E-value=0.0037  Score=69.10  Aligned_cols=62  Identities=23%  Similarity=0.408  Sum_probs=45.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCC---------CCCcceeeEEEEEEEeCCeEEEEEEEeCCCc
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPG---------QGATIGVDFMIKTVEINNERIKLQIWDTAGQ   66 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~---------~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~   66 (730)
                      ...+.+.++|++|.|||||+|.|+...+...         ...++........+.-+|..+.|.++||||-
T Consensus        19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGf   89 (366)
T KOG2655|consen   19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGF   89 (366)
T ss_pred             CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCC
Confidence            3568999999999999999999886643321         2234455555555555788889999999984

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=96.65  E-value=0.029  Score=62.37  Aligned_cols=121  Identities=21%  Similarity=0.250  Sum_probs=70.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCc--------------ceeeEEEEEEEeCCeE---------------
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGAT--------------IGVDFMIKTVEINNER---------------   55 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pT--------------ig~d~~~~~i~vdg~~---------------   55 (730)
                      ...+.|.+.|.-+.|||||+-.|+.+......-.+              .+.+.....+.+++..               
T Consensus       115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~  194 (527)
T COG5258         115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA  194 (527)
T ss_pred             CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence            34578999999999999999988877654432111              1112222333332211               


Q ss_pred             ------EEEEEEeCCCchhhhh--hhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhH
Q psy17467         56 ------IKLQIWDTAGQERFRS--ITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIV  127 (730)
Q Consensus        56 ------v~LqLwDTpG~e~~~s--l~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~  127 (730)
                            --+.++||.|++.|-+  ++-.+-...|-.+||..++|..+--. ++.                          
T Consensus       195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEH--------------------------  247 (527)
T COG5258         195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEH--------------------------  247 (527)
T ss_pred             hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHh--------------------------
Confidence                  2356677777776643  22333445677777777766443211 000                          


Q ss_pred             HHHHhhhcccccCCCCCceEEeccCCCcchhhH
Q psy17467        128 NEMASAAGLLCTVDPALATALASDKTDLDEDEH  160 (730)
Q Consensus       128 ~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~  160 (730)
                            .|  -+..-..|+++|.+|+|+.+++.
T Consensus       248 ------Lg--i~~a~~lPviVvvTK~D~~~ddr  272 (527)
T COG5258         248 ------LG--IALAMELPVIVVVTKIDMVPDDR  272 (527)
T ss_pred             ------hh--hhhhhcCCEEEEEEecccCcHHH
Confidence                  00  11225789999999999987754

>KOG1424|consensus

Probab=96.50  E-value=0.0028  Score=72.20  Aligned_cols=58  Identities=19%  Similarity=0.191  Sum_probs=43.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCch
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE   67 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e   67 (730)
                      ..+.|-+||-|||||||+||.|.+.+..... .|.|-+....++.+..   .+.|.|+||.-
T Consensus       313 ~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS-~TPGkTKHFQTi~ls~---~v~LCDCPGLV  370 (562)
T KOG1424|consen  313 DVVTVGFVGYPNVGKSSTINALVGRKKVSVS-STPGKTKHFQTIFLSP---SVCLCDCPGLV  370 (562)
T ss_pred             ceeEEEeecCCCCchhHHHHHHhcCceeeee-cCCCCcceeEEEEcCC---CceecCCCCcc
Confidence            3688999999999999999999998765432 5555555555665554   37899999963

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=96.49  E-value=0.02  Score=61.06  Aligned_cols=28  Identities=21%  Similarity=0.215  Sum_probs=23.8

Q ss_pred             cCCeEEEEecCCCCChHHHHHHHHHHHH
Q psy17467        223 HDMYYLETSAKASDNVEKLFMQIAAELM  250 (730)
Q Consensus       223 lg~~fvEtSAktG~GVeeLFe~Li~~l~  250 (730)
                      .+..++.+||+++.|++++.+.+.+.+.
T Consensus        76 ~~~~vi~iSa~~~~gi~~L~~~i~~~~~  103 (276)
T TIGR03596        76 KGIKALAINAKKGKGVKKIIKAAKKLLK  103 (276)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence            4567899999999999999988877663

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG0448|consensus

Probab=96.34  E-value=0.032  Score=65.73  Aligned_cols=30  Identities=20%  Similarity=0.400  Sum_probs=24.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCC
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPG   35 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~   35 (730)
                      ...||+|.|+.+.||||++|.++..+..+.
T Consensus       108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~  137 (749)
T KOG0448|consen  108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPS  137 (749)
T ss_pred             cccEEEEeCCCCCcHHHHHHHHHHHhhCcc
Confidence            347999999999999999999987655443

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=96.29  E-value=0.032  Score=59.83  Aligned_cols=30  Identities=23%  Similarity=0.267  Sum_probs=24.5

Q ss_pred             hcCCeEEEEecCCCCChHHHHHHHHHHHHH
Q psy17467        222 RHDMYYLETSAKASDNVEKLFMQIAAELME  251 (730)
Q Consensus       222 ~lg~~fvEtSAktG~GVeeLFe~Li~~l~e  251 (730)
                      ..+..++.+||+++.|++++.+.+...+.+
T Consensus        78 ~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~  107 (287)
T PRK09563         78 EQGIKALAINAKKGQGVKKILKAAKKLLKE  107 (287)
T ss_pred             HcCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence            336678999999999999999888776643

>cd01854 YjeQ_engC YjeQ/EngC

Probab=96.24  E-value=0.008  Score=64.56  Aligned_cols=58  Identities=22%  Similarity=0.236  Sum_probs=36.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCC-CC-----cceeeEEEEEEEeCCeEEEEEEEeCCCchhh
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQ-GA-----TIGVDFMIKTVEINNERIKLQIWDTAGQERF   69 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~-~p-----Tig~d~~~~~i~vdg~~v~LqLwDTpG~e~~   69 (730)
                      .++++|.+|||||||+|.+++....... .+     ....+.....+...+.   ..++||||..++
T Consensus       163 ~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~  226 (287)
T cd01854         163 TSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF  226 (287)
T ss_pred             eEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence            5899999999999999999975432211 11     1111222334444322   258999998654

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=96.21  E-value=0.038  Score=61.65  Aligned_cols=44  Identities=20%  Similarity=0.244  Sum_probs=37.3

Q ss_pred             EEEEEe-CCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCC
Q psy17467         46 IKTVEI-NNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISC   91 (730)
Q Consensus        46 ~~~i~v-dg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd   91 (730)
                      ...+.+ .+  ..+.++|++|+...+.-|..++.++++||+|.|+++
T Consensus       227 e~~f~~~~~--~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~  271 (389)
T PF00503_consen  227 EIDFNFSGS--RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSE  271 (389)
T ss_dssp             EEEEEE-TT--EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGG
T ss_pred             EEEEEeecc--cccceecCCCCchhhhhHHHHhccccEEEEeecccc
Confidence            334445 44  778999999999889999999999999999999875

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>COG1162 Predicted GTPases [General function prediction only]

Probab=96.20  E-value=0.0063  Score=65.84  Aligned_cols=77  Identities=21%  Similarity=0.288  Sum_probs=46.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCC------CCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGV------FPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~------f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI   83 (730)
                      .+++|.+|||||||+|++..+.      ........--++.....+.+++..   .|+||||-.++.             
T Consensus       167 svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~-------------  230 (301)
T COG1162         167 TVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG-------------  230 (301)
T ss_pred             EEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC-------------
Confidence            6899999999999999998631      111111111112345566663222   589999976543             


Q ss_pred             EEEeecCCCCchhhhHHHHHHHHHH
Q psy17467         84 ILVYDISCQPTFDCLTDWLREIEEY  108 (730)
Q Consensus        84 ILVyDvtd~eSfe~L~~wleeI~~~  108 (730)
                           + ...+.+++...+.++...
T Consensus       231 -----l-~~~~~e~l~~~F~ef~~~  249 (301)
T COG1162         231 -----L-AHLEPEDLVQAFPEFAEL  249 (301)
T ss_pred             -----c-ccCCHHHHHHHhHHHHHH
Confidence                 2 223456666666666554

>PRK00098 GTPase RsgA; Reviewed

Probab=96.19  E-value=0.0076  Score=65.05  Aligned_cols=57  Identities=21%  Similarity=0.269  Sum_probs=34.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCC-CCc---ce--eeEEEEEEEeCCeEEEEEEEeCCCchh
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQ-GAT---IG--VDFMIKTVEINNERIKLQIWDTAGQER   68 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~-~pT---ig--~d~~~~~i~vdg~~v~LqLwDTpG~e~   68 (730)
                      .++++|.+|||||||+|.+++....... .+.   -|  .+.....+..++.   ..++||||...
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~  228 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS  228 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence            4899999999999999999875432211 110   00  1122233334332   36899999754

>KOG0463|consensus

Probab=96.03  E-value=0.009  Score=65.83  Aligned_cols=83  Identities=11%  Similarity=0.078  Sum_probs=52.7

Q ss_pred             cCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHH
Q psy17467        139 TVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGED  218 (730)
Q Consensus       139 ~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~  218 (730)
                      +..-+.||++|.+|+|.+.-.       ++         -.+--.......+.-+....++|-++.|.-..      +-.
T Consensus       269 ALaL~VPVfvVVTKIDMCPAN-------iL---------qEtmKll~rllkS~gcrK~PvlVrs~DDVv~~------A~N  326 (641)
T KOG0463|consen  269 ALALHVPVFVVVTKIDMCPAN-------IL---------QETMKLLTRLLKSPGCRKLPVLVRSMDDVVHA------AVN  326 (641)
T ss_pred             hhhhcCcEEEEEEeeccCcHH-------HH---------HHHHHHHHHHhcCCCcccCcEEEecccceEEe------ecc
Confidence            445688999999999987421       10         01111223333444566677888898886422      223


Q ss_pred             HHHhcCCeEEEEecCCCCChHHHHH
Q psy17467        219 FAKRHDMYYLETSAKASDNVEKLFM  243 (730)
Q Consensus       219 lak~lg~~fvEtSAktG~GVeeLFe  243 (730)
                      +..+.-|++|.+|-.+|.|++-+..
T Consensus       327 F~Ser~CPIFQvSNVtG~NL~LLkm  351 (641)
T KOG0463|consen  327 FPSERVCPIFQVSNVTGTNLPLLKM  351 (641)
T ss_pred             CccccccceEEeccccCCChHHHHH
Confidence            3344558999999999999986643

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=95.92  E-value=0.015  Score=62.21  Aligned_cols=21  Identities=33%  Similarity=0.602  Sum_probs=18.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFT   28 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl   28 (730)
                      --|+++|.+||||||.+..+.
T Consensus        73 ~vi~l~G~~G~GKTTt~akLA   93 (272)
T TIGR00064        73 NVILFVGVNGVGKTTTIAKLA   93 (272)
T ss_pred             eEEEEECCCCCcHHHHHHHHH
Confidence            357889999999999988775

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd03112 CobW_like The function of this protein family is unkown

Probab=95.85  E-value=0.023  Score=55.56  Aligned_cols=21  Identities=38%  Similarity=0.537  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~   30 (730)
                      ++++|..|+|||||+++++..
T Consensus         3 ~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           3 TVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            679999999999999999865

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=95.83  E-value=0.042  Score=63.33  Aligned_cols=82  Identities=17%  Similarity=0.249  Sum_probs=51.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+=|+|+|+||+|||||++.+...--..+. ..+   ....+ .+.|+...+.++.+|.  +..++. ...+-||.++|.
T Consensus        69 PfIvavvGPpGtGKsTLirSlVrr~tk~ti-~~i---~GPiT-vvsgK~RRiTflEcp~--Dl~~mi-DvaKIaDLVlLl  140 (1077)
T COG5192          69 PFIVAVVGPPGTGKSTLIRSLVRRFTKQTI-DEI---RGPIT-VVSGKTRRITFLECPS--DLHQMI-DVAKIADLVLLL  140 (1077)
T ss_pred             CeEEEeecCCCCChhHHHHHHHHHHHHhhh-hcc---CCceE-EeecceeEEEEEeChH--HHHHHH-hHHHhhheeEEE
Confidence            356889999999999999877642111111 111   11222 2456778899999983  233322 334568999999


Q ss_pred             eecCCCCchh
Q psy17467         87 YDISCQPTFD   96 (730)
Q Consensus        87 yDvtd~eSfe   96 (730)
                      +|.+-.-..+
T Consensus       141 IdgnfGfEME  150 (1077)
T COG5192         141 IDGNFGFEME  150 (1077)
T ss_pred             eccccCceeh
Confidence            9987644333

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=95.75  E-value=0.031  Score=55.68  Aligned_cols=56  Identities=32%  Similarity=0.547  Sum_probs=40.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCC
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTA   64 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTp   64 (730)
                      ..+||.|-|.|||||||++.++.+.-....  -.++ -+.+..+.-+|+.+-+.+.|+.
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvg-Gf~t~EVR~gGkR~GF~Ivdl~   59 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVG-GFITPEVREGGKRIGFKIVDLA   59 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceee-eEEeeeeecCCeEeeeEEEEcc
Confidence            358999999999999999998864211111  1222 3556666778888889999987

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=95.69  E-value=0.058  Score=61.38  Aligned_cols=21  Identities=29%  Similarity=0.476  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFT   28 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl   28 (730)
                      --|+++|.+||||||++.++.
T Consensus       101 ~vi~lvG~~GvGKTTtaaKLA  121 (429)
T TIGR01425       101 NVIMFVGLQGSGKTTTCTKLA  121 (429)
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            458999999999999998885

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG2484|consensus

Probab=95.68  E-value=0.008  Score=66.86  Aligned_cols=58  Identities=21%  Similarity=0.359  Sum_probs=43.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCc
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ   66 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~   66 (730)
                      ...+++-|+|-|||||||+||+|......... ++.|++.....+..+.   .|.|.|.||.
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg-~~pGvT~smqeV~Ldk---~i~llDsPgi  307 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVG-NVPGVTRSMQEVKLDK---KIRLLDSPGI  307 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccCC-CCccchhhhhheeccC---CceeccCCce
Confidence            34689999999999999999999987664332 3444445555555554   4899999985

>KOG3887|consensus

Probab=95.41  E-value=0.063  Score=56.57  Aligned_cols=219  Identities=20%  Similarity=0.289  Sum_probs=115.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEE--EEEEeCCeEEEEEEEeCCCchhh-hh--hhHhhhccccE
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMI--KTVEINNERIKLQIWDTAGQERF-RS--ITQSYYRSAHA   82 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~--~~i~vdg~~v~LqLwDTpG~e~~-~s--l~~~~~r~ADa   82 (730)
                      =+|++.|...+||||+-.-....- .+.  .|.-.+...  ..-.+.+.-+.+++||.||+-.+ ..  -....++.+-+
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhkM-sPn--eTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gA  104 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHKM-SPN--ETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGA  104 (347)
T ss_pred             ceEEEEeecccCcchhhheeeecc-CCC--ceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCe
Confidence            359999999999999865443321 111  111111111  01112234577999999998543 22  22466889999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      .|+|+|..+. -.+.+..+...+.+.                             ...+|++-+-+..-|.|...++...
T Consensus       105 LifvIDaQdd-y~eala~L~~~v~ra-----------------------------ykvNp~in~EVfiHKvDGLsdd~ki  154 (347)
T KOG3887|consen  105 LIFVIDAQDD-YMEALARLHMTVERA-----------------------------YKVNPNINFEVFIHKVDGLSDDFKI  154 (347)
T ss_pred             EEEEEechHH-HHHHHHHHHHHhhhe-----------------------------eecCCCceEEEEEEeccCCchhhhh
Confidence            9999997652 122223222222211                             1134777777788899987655321


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH----hcCCeEEEEecCCCCCh
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK----RHDMYYLETSAKASDNV  238 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak----~lg~~fvEtSAktG~GV  238 (730)
                                                            -++-|     +......+++.    ...+.|+-+|-- ...|
T Consensus       155 --------------------------------------etqrd-----I~qr~~d~l~d~gle~v~vsf~LTSIy-DHSI  190 (347)
T KOG3887|consen  155 --------------------------------------ETQRD-----IHQRTNDELADAGLEKVQVSFYLTSIY-DHSI  190 (347)
T ss_pred             --------------------------------------hhHHH-----HHHHhhHHHHhhhhccceEEEEEeeec-chHH
Confidence                                                  11222     22222233332    233467777644 4678


Q ss_pred             HHHHHHHHHHHHHHHHHHh----------hhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHHhhcCCCCc
Q psy17467        239 EKLFMQIAAELMEKLAEKL----------TIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNID  308 (730)
Q Consensus       239 eeLFe~Li~~l~e~~~~~~----------~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~~k~~p~~~  308 (730)
                      -+.|..++..+.......+          .....-....+++||-      ...+.|.-+..+.+..++....-+...++
T Consensus       191 fEAFSkvVQkLipqLptLEnlLnif~s~S~ieKafLFDv~SKIYi------aTDS~PVdmq~YElC~d~IDV~iDl~~iY  264 (347)
T KOG3887|consen  191 FEAFSKVVQKLIPQLPTLENLLNIFISNSKIEKAFLFDVLSKIYI------ATDSSPVDMQSYELCCDMIDVTIDLSSIY  264 (347)
T ss_pred             HHHHHHHHHHHhhhchhHHHHHHHHhhccchhhhhhhhhhheeEE------ecCCCcchhHHHHHHHhhhheeeehHHhh
Confidence            8888888777644322111          1111112233455554      34566777777766666655444443333


Q ss_pred             e
Q psy17467        309 I  309 (730)
Q Consensus       309 ~  309 (730)
                      .
T Consensus       265 g  265 (347)
T KOG3887|consen  265 G  265 (347)
T ss_pred             C
Confidence            3

>PRK01889 GTPase RsgA; Reviewed

Probab=95.39  E-value=0.044  Score=60.76  Aligned_cols=25  Identities=16%  Similarity=0.142  Sum_probs=21.0

Q ss_pred             hcCCeEEEEecCCCCChHHHHHHHH
Q psy17467        222 RHDMYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       222 ~lg~~fvEtSAktG~GVeeLFe~Li  246 (730)
                      ..|.+++.+||++|.|++++...+-
T Consensus       169 ~~g~~Vi~vSa~~g~gl~~L~~~L~  193 (356)
T PRK01889        169 APGVPVLAVSALDGEGLDVLAAWLS  193 (356)
T ss_pred             CCCCcEEEEECCCCccHHHHHHHhh
Confidence            4577889999999999999888763

>KOG0467|consensus

Probab=95.34  E-value=0.044  Score=65.12  Aligned_cols=90  Identities=18%  Similarity=0.251  Sum_probs=66.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCC------------CCCC--CCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGV------------FPPG--QGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR   70 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~------------f~~~--~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~   70 (730)
                      +..=++++|-.-.-|||||...+.-..            |...  ...+-|++..+..+..-.+.+.++++|+||+-+|.
T Consensus         7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~   86 (887)
T KOG0467|consen    7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS   86 (887)
T ss_pred             CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence            344578999999999999999887421            1111  11233444444455554556899999999999999


Q ss_pred             hhhHhhhccccEEEEEeecCCCCc
Q psy17467         71 SITQSYYRSAHALILVYDISCQPT   94 (730)
Q Consensus        71 sl~~~~~r~ADaIILVyDvtd~eS   94 (730)
                      +......+-+|++++.+|+...-.
T Consensus        87 sevssas~l~d~alvlvdvvegv~  110 (887)
T KOG0467|consen   87 SEVSSASRLSDGALVLVDVVEGVC  110 (887)
T ss_pred             hhhhhhhhhcCCcEEEEeeccccc
Confidence            998889999999999999877543

>KOG0464|consensus

Probab=95.11  E-value=0.02  Score=63.82  Aligned_cols=96  Identities=21%  Similarity=0.338  Sum_probs=74.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc--------CCCCCCC--------CCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhh
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ--------GVFPPGQ--------GATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSI   72 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~--------~~f~~~~--------~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl   72 (730)
                      +|-|+..-.+||||...|++.        +......        ...-|++.++..+.++++.+.++++||||+-+|+--
T Consensus        39 nigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~le  118 (753)
T KOG0464|consen   39 NIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLE  118 (753)
T ss_pred             cceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEEE
Confidence            567778889999999999763        1111111        123455667777888888899999999999999888


Q ss_pred             hHhhhccccEEEEEeecCCCCchhhhHHHHHH
Q psy17467         73 TQSYYRSAHALILVYDISCQPTFDCLTDWLRE  104 (730)
Q Consensus        73 ~~~~~r~ADaIILVyDvtd~eSfe~L~~wlee  104 (730)
                      .+.+++--|+++.|||.+-...-+.+.-|.+.
T Consensus       119 verclrvldgavav~dasagve~qtltvwrqa  150 (753)
T KOG0464|consen  119 VERCLRVLDGAVAVFDASAGVEAQTLTVWRQA  150 (753)
T ss_pred             HHHHHHHhcCeEEEEeccCCcccceeeeehhc
Confidence            89999999999999999987777777777554

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=95.09  E-value=0.2  Score=50.29  Aligned_cols=66  Identities=20%  Similarity=0.227  Sum_probs=40.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEE--eCC-CchhhhhhhHhhhccccEEEE
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW--DTA-GQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLw--DTp-G~e~~~sl~~~~~r~ADaIIL   85 (730)
                      .++++|++|+|||||++.+.+-..     |+.|      .+.+++..+.+..-  +.+ |+.+.-.+......+.+++++
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G------~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllL   95 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQLI-----PNGD------NDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLF   95 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCCC-----CCCc------EEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            489999999999999999887532     3333      33344433222111  134 334444566677777776655

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14974 cell division protein FtsY; Provisional

Probab=94.75  E-value=0.083  Score=58.33  Aligned_cols=43  Identities=12%  Similarity=0.040  Sum_probs=27.1

Q ss_pred             cccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467        197 HCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       197 ~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~  244 (730)
                      ..++.+|.|...+.   -.+..++...+.++.+++  +|++++++...
T Consensus       282 ~giIlTKlD~~~~~---G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~  324 (336)
T PRK14974        282 DGVILTKVDADAKG---GAALSIAYVIGKPILFLG--VGQGYDDLIPF  324 (336)
T ss_pred             CEEEEeeecCCCCc---cHHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence            34455666654322   234455556788888887  79999877543

>PRK13695 putative NTPase; Provisional

Probab=94.70  E-value=0.34  Score=47.65  Aligned_cols=22  Identities=41%  Similarity=0.703  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .||+++|.+|+|||||+..+.+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998754

>KOG2485|consensus

Probab=94.50  E-value=0.055  Score=58.83  Aligned_cols=59  Identities=20%  Similarity=0.314  Sum_probs=37.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCC------CCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCc
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGV------FPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ   66 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~------f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~   66 (730)
                      ..+.+.|+|-||||||||+|.+....      ......|.++.... ..+.+.+.. .+.+.||||.
T Consensus       142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~-~~iri~~rp-~vy~iDTPGi  206 (335)
T KOG2485|consen  142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVS-ERIRISHRP-PVYLIDTPGI  206 (335)
T ss_pred             CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeeh-hheEeccCC-ceEEecCCCc
Confidence            45789999999999999999876421      12233444442222 223343322 3789999995

>KOG3859|consensus

Probab=94.46  E-value=0.068  Score=57.30  Aligned_cols=62  Identities=27%  Similarity=0.435  Sum_probs=46.4

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCC----CCcceeeEEEEEEEeCCeEEEEEEEeCCC
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQ----GATIGVDFMIKTVEINNERIKLQIWDTAG   65 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~----~pTig~d~~~~~i~vdg~~v~LqLwDTpG   65 (730)
                      .-+.++|+.||..|.|||||+..+.+..|....    .|++........+.-.+..+.+.++||.|
T Consensus        39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG  104 (406)
T KOG3859|consen   39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG  104 (406)
T ss_pred             cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence            346799999999999999999999998886543    34454333333344456678889999997

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=94.32  E-value=0.55  Score=54.93  Aligned_cols=21  Identities=38%  Similarity=0.681  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .|+|+|+.||||||++..|..
T Consensus       352 vIaLVGPtGvGKTTtaakLAa  372 (559)
T PRK12727        352 VIALVGPTGAGKTTTIAKLAQ  372 (559)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999988864

>KOG0466|consensus

Probab=94.31  E-value=0.19  Score=54.59  Aligned_cols=111  Identities=16%  Similarity=0.151  Sum_probs=63.5

Q ss_pred             HHHHHHHHh---cCCeEEEEecCCCCChHHHHHHHHHHHHHHHHHHhhhccccccccchhhhc-ccccCCCCCCCCCccc
Q psy17467        214 EVGEDFAKR---HDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYN-IKKACGDAKSKPSFLS  289 (730)
Q Consensus       214 ee~~~lak~---lg~~fvEtSAktG~GVeeLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~-~~~~~~~~~s~P~~l~  289 (730)
                      ++.++|.+.   -|++++.+||.-+.||+-+.+.|++.+....+.    ......--.+|.+. .+|++....-+ -.+.
T Consensus       202 e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRd----f~s~prlIVIRSFDVNkPG~ev~~lk-Ggva  276 (466)
T KOG0466|consen  202 EQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRD----FTSPPRLIVIRSFDVNKPGSEVDDLK-GGVA  276 (466)
T ss_pred             HHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccc----cCCCCcEEEEEeeccCCCCchhhccc-Cccc
Confidence            455555553   367999999999999999999999877322111    11112222333332 22333322222 2233


Q ss_pred             cchhhH---HHHHHhhcCCCCceeeeccccccchhhHHHhHhh
Q psy17467        290 DKSLES---CIKQIVKKFPNIDIKSVSGISQIRSDIVKSLSLY  329 (730)
Q Consensus       290 ~~~~~~---~~~~~~k~~p~~~~~~~~~~~~~~~~~~~~l~~~  329 (730)
                      +++...   ++-+...-+|.+-.++.+|-.+-+.=|-|..+++
T Consensus       277 ggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~  319 (466)
T KOG0466|consen  277 GGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLF  319 (466)
T ss_pred             cchhhhhhhhcCcEEEecCceeeecCCCcEEEeeHHHHHHHHH
Confidence            444333   3334467788888888887666666565655544

>KOG0460|consensus

Probab=94.19  E-value=0.19  Score=55.45  Aligned_cols=88  Identities=19%  Similarity=0.172  Sum_probs=57.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcC-------CC---CC-CCC---CcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQG-------VF---PP-GQG---ATIGVDFMIKTVEINNERIKLQIWDTAGQERFR   70 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~-------~f---~~-~~~---pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~   70 (730)
                      +.-++|--+|.-.-|||||...++.-       ++   .. +..   -.-|++...-.+.|.-....+-=.|+||+.+|-
T Consensus        52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI  131 (449)
T KOG0460|consen   52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI  131 (449)
T ss_pred             CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence            45578889999999999999887641       11   11 011   122444555566665444455668999998775


Q ss_pred             hhhHhhhccccEEEEEeecCCC
Q psy17467         71 SITQSYYRSAHALILVYDISCQ   92 (730)
Q Consensus        71 sl~~~~~r~ADaIILVyDvtd~   92 (730)
                      .---.-....|+.|||+..+|.
T Consensus       132 KNMItGaaqMDGaILVVaatDG  153 (449)
T KOG0460|consen  132 KNMITGAAQMDGAILVVAATDG  153 (449)
T ss_pred             HHhhcCccccCceEEEEEcCCC
Confidence            4322233456999999999994

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=94.06  E-value=0.064  Score=53.39  Aligned_cols=52  Identities=29%  Similarity=0.438  Sum_probs=34.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT   63 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDT   63 (730)
                      ||++.|+||+|||||+.+++..-.. ...+..|  +++..+.-++..+-+.+.|.
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~-~~~~v~G--f~t~evr~~g~r~GF~iv~l   52 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKK-KGLPVGG--FYTEEVRENGRRIGFDIVDL   52 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHH-TCGGEEE--EEEEEEETTSSEEEEEEEET
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhc-cCCccce--EEeecccCCCceEEEEEEEC
Confidence            6899999999999999998743211 1113333  45555555676777788887

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=93.96  E-value=0.046  Score=49.91  Aligned_cols=22  Identities=23%  Similarity=0.595  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .|+|.|.+||||||+.+.+...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999753

...

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=93.82  E-value=0.99  Score=49.55  Aligned_cols=45  Identities=11%  Similarity=0.063  Sum_probs=31.8

Q ss_pred             CccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467        195 NIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       195 ~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~  244 (730)
                      .+..+|.||.|...+   .-.+..++...++++.+++  +|++++++-..
T Consensus       260 ~~~giIlTKlD~t~~---~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~~  304 (318)
T PRK10416        260 GLTGIILTKLDGTAK---GGVVFAIADELGIPIKFIG--VGEGIDDLQPF  304 (318)
T ss_pred             CCCEEEEECCCCCCC---ccHHHHHHHHHCCCEEEEe--CCCChhhCccC
Confidence            355678899996533   2345566677799999998  78998877443

>KOG0447|consensus

Probab=93.75  E-value=0.4  Score=55.46  Aligned_cols=27  Identities=33%  Similarity=0.522  Sum_probs=23.2

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcC
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .+++-+|+|||+..+||||.+..+...
T Consensus       305 ~DhLPRVVVVGDQSaGKTSVLEmiAqA  331 (980)
T KOG0447|consen  305 QDHLPRVVVVGDQSAGKTSVLEMIAQA  331 (980)
T ss_pred             cccCceEEEEcCccccchHHHHHHHHh
Confidence            456779999999999999999887654

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.69  E-value=0.12  Score=65.08  Aligned_cols=44  Identities=23%  Similarity=0.265  Sum_probs=29.0

Q ss_pred             HHHHHhHHHHHHHHHhhhhccCCCCCcccCcHHHHHHHHHHHHHH
Q psy17467        453 EYLHQHLESRFSRALVGMVMFNPDTSEIAKPSELLASVRAYMNVL  497 (730)
Q Consensus       453 eyl~~~l~~~f~~~~~~~~~~~~~~~~~~rps~~l~~~~~~~~~~  497 (730)
                      .=.++.|+..|--.++.++. ++.....+.|-+.+..+|+|.+--
T Consensus       541 ~~Y~~~L~~~~lp~l~~~~e-~~L~~~~~d~e~~y~aLk~YlML~  584 (1188)
T COG3523         541 DTYRRLLEQVLLPRLVNRLE-NALNAAPADSEELYDALKAYLMLG  584 (1188)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHhcccchHHHHHHHHHHHHhc
Confidence            34456677777666655442 222347778889999999998753

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=93.65  E-value=0.21  Score=44.65  Aligned_cols=83  Identities=16%  Similarity=0.250  Sum_probs=51.6

Q ss_pred             EEEEc-CCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEee
Q psy17467         10 VVLVG-NAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYD   88 (730)
Q Consensus        10 IvVLG-~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyD   88 (730)
                      |++.| ..|+||||+...+...-.. ...+..       .+..+.. +.+.++|+|+....  .....+..+|.+|++.+
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl-------~~d~d~~-~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVL-------LIDLDPQ-YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEE-------EEeCCCC-CCEEEEeCcCCCCH--HHHHHHHHCCEEEEecc
Confidence            56777 6799999987766432111 111222       1222221 56889999986432  23367788999999998


Q ss_pred             cCCCCchhhhHHHHHH
Q psy17467         89 ISCQPTFDCLTDWLRE  104 (730)
Q Consensus        89 vtd~eSfe~L~~wlee  104 (730)
                      . +..++..+.++++.
T Consensus        71 ~-~~~s~~~~~~~~~~   85 (104)
T cd02042          71 P-SPLDLDGLEKLLET   85 (104)
T ss_pred             C-CHHHHHHHHHHHHH
Confidence            6 45567777666653

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=93.33  E-value=0.065  Score=50.19  Aligned_cols=20  Identities=35%  Similarity=0.803  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~   29 (730)
                      |+++|.|||||||++.++..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999974

...

>KOG0085|consensus

Probab=93.26  E-value=0.26  Score=51.74  Aligned_cols=22  Identities=23%  Similarity=0.548  Sum_probs=19.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHH
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRF   27 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrL   27 (730)
                      ..+|++++|...+||||++.++
T Consensus        38 relkllllgtgesgkstfikqm   59 (359)
T KOG0085|consen   38 RELKLLLLGTGESGKSTFIKQM   59 (359)
T ss_pred             hhheeeeecCCCcchhhHHHHH
Confidence            5689999999999999999865

>PF13173 AAA_14: AAA domain

Probab=93.25  E-value=0.16  Score=47.63  Aligned_cols=23  Identities=35%  Similarity=0.798  Sum_probs=20.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVF   32 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f   32 (730)
                      +++.|+.+||||||+.++.....
T Consensus         5 ~~l~G~R~vGKTtll~~~~~~~~   27 (128)
T PF13173_consen    5 IILTGPRGVGKTTLLKQLAKDLL   27 (128)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhc
Confidence            78999999999999999986543

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=93.15  E-value=0.65  Score=53.41  Aligned_cols=63  Identities=22%  Similarity=0.221  Sum_probs=42.0

Q ss_pred             hhhhHhhhccccEEEEEee-cCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcc
Q psy17467         70 RSITQSYYRSAHALILVYD-ISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGL  136 (730)
Q Consensus        70 ~sl~~~~~r~ADaIILVyD-vtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~  136 (730)
                      -.+.+..|++++.+||  | -|.--+.+.+.+++.-+++....+..+++|-  --++++.++.+...+
T Consensus       149 VEIlKaLyr~a~iLIL--DEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~IT--HKL~Ev~~iaDrvTV  212 (501)
T COG3845         149 VEILKALYRGARLLIL--DEPTAVLTPQEADELFEILRRLAAEGKTIIFIT--HKLKEVMAIADRVTV  212 (501)
T ss_pred             HHHHHHHhcCCCEEEE--cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEe--ccHHHHHHhhCeeEE
Confidence            3344566888887654  5 3444456788888888888888888888876  335555555555544

>PRK08118 topology modulation protein; Reviewed

Probab=93.14  E-value=0.071  Score=52.75  Aligned_cols=22  Identities=36%  Similarity=0.798  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      ||+|+|++|||||||..++...
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999998754

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=93.08  E-value=0.39  Score=43.46  Aligned_cols=24  Identities=33%  Similarity=0.555  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      --+++.|++|+|||+|++.+...-
T Consensus        20 ~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          20 KNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            358999999999999999998654

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=93.00  E-value=0.055  Score=52.52  Aligned_cols=22  Identities=27%  Similarity=0.604  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999854

>KOG0465|consensus

Probab=92.94  E-value=0.26  Score=57.67  Aligned_cols=109  Identities=17%  Similarity=0.173  Sum_probs=68.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCC------C----------CCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhh
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPG------Q----------GATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSI   72 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~------~----------~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl   72 (730)
                      +|-+.-.-.+||||+-.|.+...-...      .          ...-|++..+......+..+.++++||||+-+|.--
T Consensus        41 NIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~E  120 (721)
T KOG0465|consen   41 NIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFE  120 (721)
T ss_pred             ccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEEE
Confidence            345555667899999998763210000      0          011122223333333344689999999999998887


Q ss_pred             hHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEecc
Q psy17467         73 TQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGT  121 (730)
Q Consensus        73 ~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k  121 (730)
                      .+..++--|+.|+|+|......-+...-|.+.-+    -+.|.+...||
T Consensus       121 VeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~r----y~vP~i~FiNK  165 (721)
T KOG0465|consen  121 VERALRVLDGAVLVLDAVAGVESQTETVWRQMKR----YNVPRICFINK  165 (721)
T ss_pred             ehhhhhhccCeEEEEEcccceehhhHHHHHHHHh----cCCCeEEEEeh
Confidence            7888999999999999876655555555655432    24566666555

>PRK07261 topology modulation protein; Provisional

Probab=92.88  E-value=0.081  Score=52.44  Aligned_cols=21  Identities=38%  Similarity=0.836  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      ||+|+|.+|+|||||...+..
T Consensus         2 ri~i~G~~GsGKSTla~~l~~   22 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQ   22 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            799999999999999999864

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=92.85  E-value=0.074  Score=53.50  Aligned_cols=22  Identities=23%  Similarity=0.730  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      ||+|+|+||+||||+..++...
T Consensus         2 riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999999865

>TIGR00959 ffh signal recognition particle protein

Probab=92.83  E-value=0.26  Score=56.14  Aligned_cols=21  Identities=29%  Similarity=0.493  Sum_probs=17.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFT   28 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl   28 (730)
                      .-++++|.+||||||++..+.
T Consensus       100 ~vi~~vG~~GsGKTTtaakLA  120 (428)
T TIGR00959       100 TVILMVGLQGSGKTTTCGKLA  120 (428)
T ss_pred             EEEEEECCCCCcHHHHHHHHH
Confidence            458999999999999976654

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=92.79  E-value=0.41  Score=46.00  Aligned_cols=65  Identities=20%  Similarity=0.318  Sum_probs=39.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEE-EeCCC-chhhhhhhHhhhccccEEEE
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI-WDTAG-QERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqL-wDTpG-~e~~~sl~~~~~r~ADaIIL   85 (730)
                      .++|+|++|+|||||++.+.+...     |+.|      .+.+++.. .+-+ ...++ +.+.-.+......+.+++|+
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~~-----~~~G------~i~~~~~~-~i~~~~~lS~G~~~rv~laral~~~p~illl   94 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGELE-----PDEG------IVTWGSTV-KIGYFEQLSGGEKMRLALAKLLLENPNLLLL   94 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCC-----CCce------EEEECCeE-EEEEEccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            378999999999999999987532     3333      33444421 1222 22443 33334456677777775554

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=92.48  E-value=0.1  Score=48.70  Aligned_cols=22  Identities=32%  Similarity=0.523  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++|+|++|+|||||++.+.+.
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~   34 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGL   34 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEEccCCCccccceeeeccc
Confidence            4899999999999999988764

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=92.47  E-value=0.37  Score=43.99  Aligned_cols=91  Identities=14%  Similarity=0.166  Sum_probs=52.8

Q ss_pred             EEEE-cCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEee
Q psy17467         10 VVLV-GNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYD   88 (730)
Q Consensus        10 IvVL-G~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyD   88 (730)
                      |+++ +..|+||||+...+...-.......+.-.|.....    +  ..+.++|+|+....  .....+..||.+|+|.+
T Consensus         2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~----~--~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~   73 (106)
T cd03111           2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF----G--DDYVVVDLGRSLDE--VSLAALDQADRVFLVTQ   73 (106)
T ss_pred             EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC----C--CCEEEEeCCCCcCH--HHHHHHHHcCeEEEEec
Confidence            3444 47899999987666422111101122211111110    1  15789999986432  33456788999999987


Q ss_pred             cCCCCchhhhHHHHHHHHHHh
Q psy17467         89 ISCQPTFDCLTDWLREIEEYA  109 (730)
Q Consensus        89 vtd~eSfe~L~~wleeI~~~~  109 (730)
                      . +..++..+..+++.+.+..
T Consensus        74 ~-~~~s~~~~~~~~~~l~~~~   93 (106)
T cd03111          74 Q-DLPSIRNAKRLLELLRVLD   93 (106)
T ss_pred             C-ChHHHHHHHHHHHHHHHcC
Confidence            5 4566777777777766543

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PRK14738 gmk guanylate kinase; Provisional

Probab=92.46  E-value=0.12  Score=52.70  Aligned_cols=27  Identities=30%  Similarity=0.449  Sum_probs=22.4

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcC
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .....-|+|+|++|||||||++++...
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            344566899999999999999999754

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=92.38  E-value=0.12  Score=46.09  Aligned_cols=25  Identities=36%  Similarity=0.647  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFP   33 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~   33 (730)
                      .++++|++|+|||+++..+...-..
T Consensus         4 ~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        4 VILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             EEEEECCCCCcHHHHHHHHHhccCC
Confidence            6899999999999999999865443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK14737 gmk guanylate kinase; Provisional

Probab=91.99  E-value=0.12  Score=52.14  Aligned_cols=21  Identities=19%  Similarity=0.447  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~   30 (730)
                      |+|+|++|||||||+++++..
T Consensus         7 ivl~GpsG~GK~tl~~~l~~~   27 (186)
T PRK14737          7 FIISSVAGGGKSTIIQALLEE   27 (186)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            899999999999999999864

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=91.90  E-value=0.88  Score=38.65  Aligned_cols=76  Identities=20%  Similarity=0.240  Sum_probs=46.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhh-hHhhhccccEEEEEee
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSI-TQSYYRSAHALILVYD   88 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl-~~~~~r~ADaIILVyD   88 (730)
                      +++.|.+|+|||++...+...-....+          +.+.++    .+.++|+++....... .......+|.++++.+
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~----------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGK----------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCC----------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            678899999999999887643211111          112222    4789999986433221 1455668899999998


Q ss_pred             cCCCCchhhhHH
Q psy17467         89 ISCQPTFDCLTD  100 (730)
Q Consensus        89 vtd~eSfe~L~~  100 (730)
                      .+. .+......
T Consensus        68 ~~~-~~~~~~~~   78 (99)
T cd01983          68 PEA-LAVLGARR   78 (99)
T ss_pred             Cch-hhHHHHHH
Confidence            654 33444433

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=91.69  E-value=2.9  Score=46.10  Aligned_cols=22  Identities=32%  Similarity=0.478  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      .+|-|.=|+|||||+++++.+.
T Consensus         4 tvitGFLGsGKTTlL~~lL~~~   25 (323)
T COG0523           4 TVITGFLGSGKTTLLNHLLANR   25 (323)
T ss_pred             EEEeecCCCCHHHHHHHHHhcc
Confidence            3677899999999999998653

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=91.68  E-value=0.14  Score=46.77  Aligned_cols=21  Identities=43%  Similarity=0.648  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~   30 (730)
                      |++.|+||+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999999864

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>KOG0099|consensus

Probab=91.66  E-value=1.5  Score=47.09  Aligned_cols=44  Identities=18%  Similarity=0.351  Sum_probs=36.9

Q ss_pred             EEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCC
Q psy17467         46 IKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISC   91 (730)
Q Consensus        46 ~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd   91 (730)
                      ...+.++.  +.++.+|++|+.+.+.-|-+.+.+..+||+|...++
T Consensus       194 et~FqVdk--v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSs  237 (379)
T KOG0099|consen  194 ETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSS  237 (379)
T ss_pred             eEEEeccc--cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccc
Confidence            33444444  779999999999999999999999999999998775

>PRK01889 GTPase RsgA; Reviewed

Probab=91.58  E-value=0.17  Score=56.26  Aligned_cols=23  Identities=39%  Similarity=0.622  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      +++++|.+|||||||+|.+++..
T Consensus       197 ~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        197 TVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             EEEEECCCCccHHHHHHHHHHhc
Confidence            68999999999999999998643

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=91.58  E-value=0.14  Score=54.23  Aligned_cols=22  Identities=32%  Similarity=0.530  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      |+|||++|||||||++-+.+-.
T Consensus        32 vsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            8999999999999999998744

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=91.38  E-value=1  Score=50.54  Aligned_cols=21  Identities=33%  Similarity=0.563  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      -++++|++||||||++.++..
T Consensus       139 ii~lvGptGvGKTTtiakLA~  159 (374)
T PRK14722        139 VFALMGPTGVGKTTTTAKLAA  159 (374)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999875

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=91.36  E-value=2.2  Score=41.06  Aligned_cols=23  Identities=39%  Similarity=0.559  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      .++|+|++|+|||||++.+.+..
T Consensus        27 ~~~i~G~nGsGKStll~~l~g~~   49 (157)
T cd00267          27 IVALVGPNGSGKSTLLRAIAGLL   49 (157)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998653

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=91.18  E-value=0.16  Score=49.87  Aligned_cols=22  Identities=27%  Similarity=0.424  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      -++|+|++|||||||++.+...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3799999999999999998764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=91.17  E-value=0.17  Score=46.03  Aligned_cols=21  Identities=24%  Similarity=0.515  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~   30 (730)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998753

...

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=91.11  E-value=0.63  Score=44.95  Aligned_cols=22  Identities=50%  Similarity=0.755  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      -|++.|+.|+|||||++.+...
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~   45 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQG   45 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            3889999999999999999865

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=91.08  E-value=0.21  Score=42.16  Aligned_cols=20  Identities=25%  Similarity=0.539  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~   29 (730)
                      .+|.|+.|+|||||+..+..
T Consensus        26 tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   26 TLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999998764

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=90.97  E-value=0.37  Score=49.28  Aligned_cols=23  Identities=30%  Similarity=0.508  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      .++++|++|+|||||++.+.+-.
T Consensus        28 ~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          28 ITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            47999999999999999998754

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR03263 guanyl_kin guanylate kinase

Probab=90.97  E-value=0.18  Score=49.39  Aligned_cols=22  Identities=36%  Similarity=0.681  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      -|+|+|++|+|||||++.+...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            3899999999999999999874

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=90.90  E-value=0.18  Score=50.26  Aligned_cols=22  Identities=32%  Similarity=0.522  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .|+|+|++|+|||||++.+.+.
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999999654

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=90.89  E-value=0.21  Score=42.19  Aligned_cols=21  Identities=19%  Similarity=0.653  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~   30 (730)
                      |++.|.+|+||||+.+.+...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999998754

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=90.82  E-value=0.13  Score=52.37  Aligned_cols=23  Identities=39%  Similarity=0.640  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      =+++.|++|||||||+++++...
T Consensus         6 l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           6 LIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            37999999999999999999765

>PRK06217 hypothetical protein; Validated

Probab=90.75  E-value=0.2  Score=49.89  Aligned_cols=23  Identities=22%  Similarity=0.475  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .+|+|+|.+|+|||||..++...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999753

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=90.67  E-value=0.24  Score=51.71  Aligned_cols=23  Identities=35%  Similarity=0.547  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      .++|+|++|+|||||++++-+-+
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE   52 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLE   52 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCc
Confidence            38999999999999999987544

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=90.67  E-value=0.19  Score=53.66  Aligned_cols=21  Identities=24%  Similarity=0.423  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~   30 (730)
                      ++|+|++|||||||++.+.+-
T Consensus        31 ~~iiGpNG~GKSTLLk~l~g~   51 (258)
T COG1120          31 TGILGPNGSGKSTLLKCLAGL   51 (258)
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            689999999999999999863

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=90.65  E-value=0.21  Score=47.84  Aligned_cols=21  Identities=43%  Similarity=0.824  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~   30 (730)
                      |+|+|++|+|||||++.+...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=90.51  E-value=0.21  Score=49.01  Aligned_cols=21  Identities=24%  Similarity=0.518  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      -|+|+|.|||||||+++++..
T Consensus         5 ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         5 IIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999974

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=90.49  E-value=2  Score=47.01  Aligned_cols=24  Identities=29%  Similarity=0.545  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      =.++++|++|.|||+++++|....
T Consensus        62 p~lLivG~snnGKT~Ii~rF~~~h   85 (302)
T PF05621_consen   62 PNLLIVGDSNNGKTMIIERFRRLH   85 (302)
T ss_pred             CceEEecCCCCcHHHHHHHHHHHC
Confidence            458999999999999999999754

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>COG1162 Predicted GTPases [General function prediction only]

Probab=90.48  E-value=1  Score=49.18  Aligned_cols=35  Identities=23%  Similarity=0.048  Sum_probs=28.7

Q ss_pred             HHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHHH
Q psy17467        214 EVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE  248 (730)
Q Consensus       214 ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~~  248 (730)
                      ++.......+|...+.+|++++.|++++.+.+...
T Consensus       131 ~~~~~~y~~~gy~v~~~s~~~~~~~~~l~~~l~~~  165 (301)
T COG1162         131 KELLREYEDIGYPVLFVSAKNGDGLEELAELLAGK  165 (301)
T ss_pred             HHHHHHHHhCCeeEEEecCcCcccHHHHHHHhcCC
Confidence            34566677889999999999999999998877543

>KOG0780|consensus

Probab=90.39  E-value=0.47  Score=53.19  Aligned_cols=88  Identities=24%  Similarity=0.348  Sum_probs=50.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHc----C----------CCCCCC-------CCcceeeEEEEEEEe-------------CCeE
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQ----G----------VFPPGQ-------GATIGVDFMIKTVEI-------------NNER   55 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~----~----------~f~~~~-------~pTig~d~~~~~i~v-------------dg~~   55 (730)
                      |.+||..|+||||.+.+|..    .          .|...-       ....++.++-...+.             ..+.
T Consensus       104 imfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~  183 (483)
T KOG0780|consen  104 IMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKEN  183 (483)
T ss_pred             EEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcC
Confidence            78999999999998877643    1          111100       011122222221111             1345


Q ss_pred             EEEEEEeCCCchh-hhhhhHhh-----hccccEEEEEeecCCCCchhh
Q psy17467         56 IKLQIWDTAGQER-FRSITQSY-----YRSAHALILVYDISCQPTFDC   97 (730)
Q Consensus        56 v~LqLwDTpG~e~-~~sl~~~~-----~r~ADaIILVyDvtd~eSfe~   97 (730)
                      +.+.|+||+|... ..++....     .-+.|-+|+|.|.+-.+.-+.
T Consensus       184 fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~  231 (483)
T KOG0780|consen  184 FDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEA  231 (483)
T ss_pred             CcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHH
Confidence            7899999999532 22333322     235799999999886555433

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=90.32  E-value=0.4  Score=54.04  Aligned_cols=84  Identities=18%  Similarity=0.328  Sum_probs=59.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeec
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDI   89 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDv   89 (730)
                      |.++|.+|||||||+.-+++-.     .|..|      .+-+||+.+     |--..++|+.+....+.+.+.+==.+..
T Consensus       352 vFliG~NGsGKST~~~LLtGL~-----~PqsG------~I~ldg~pV-----~~e~ledYR~LfSavFsDyhLF~~ll~~  415 (546)
T COG4615         352 VFLIGGNGSGKSTLAMLLTGLY-----QPQSG------EILLDGKPV-----SAEQLEDYRKLFSAVFSDYHLFDQLLGP  415 (546)
T ss_pred             EEEECCCCCcHHHHHHHHhccc-----CCCCC------ceeECCccC-----CCCCHHHHHHHHHHHhhhHhhhHhhhCC
Confidence            7899999999999999888653     24444      555676443     4455678988888887766554444445


Q ss_pred             CCCCchhhhHHHHHHHHHHh
Q psy17467         90 SCQPTFDCLTDWLREIEEYA  109 (730)
Q Consensus        90 td~eSfe~L~~wleeI~~~~  109 (730)
                      ....|-+.+..|++.+.-.+
T Consensus       416 e~~as~q~i~~~LqrLel~~  435 (546)
T COG4615         416 EGKASPQLIEKWLQRLELAH  435 (546)
T ss_pred             ccCCChHHHHHHHHHHHHhh
Confidence            55577888899999876443

>KOG0066|consensus

Probab=90.30  E-value=1.6  Score=49.77  Aligned_cols=25  Identities=28%  Similarity=0.517  Sum_probs=21.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcC
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      ..-+|+|||+.|||||||+.-+++.
T Consensus       612 mdSRiaIVGPNGVGKSTlLkLL~Gk  636 (807)
T KOG0066|consen  612 MDSRIAIVGPNGVGKSTLLKLLIGK  636 (807)
T ss_pred             ccceeEEECCCCccHHHHHHHHhcC
Confidence            3458999999999999999988863

>PRK03839 putative kinase; Provisional

Probab=90.27  E-value=0.23  Score=49.00  Aligned_cols=22  Identities=27%  Similarity=0.570  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      +|+|+|.||+||||+..++...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999998753

>PRK05541 adenylylsulfate kinase; Provisional

Probab=90.26  E-value=0.27  Score=48.31  Aligned_cols=29  Identities=24%  Similarity=0.343  Sum_probs=23.9

Q ss_pred             CCCCcceeEEEEEcCCCCCHHHHHHHHHc
Q psy17467          1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      |+....-.-|++.|.+|+||||+.+.+..
T Consensus         1 ~~~~~~~~~I~i~G~~GsGKst~a~~l~~   29 (176)
T PRK05541          1 MQMKPNGYVIWITGLAGSGKTTIAKALYE   29 (176)
T ss_pred             CCCCCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence            55555556799999999999999988764

>PRK14530 adenylate kinase; Provisional

Probab=90.25  E-value=0.24  Score=50.61  Aligned_cols=21  Identities=24%  Similarity=0.583  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      +|+|+|.|||||||+.+++..
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999864

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=90.15  E-value=0.22  Score=48.36  Aligned_cols=21  Identities=38%  Similarity=0.738  Sum_probs=16.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      -++|.|.+|+|||+|++++..
T Consensus        26 ~~ll~G~~G~GKT~ll~~~~~   46 (185)
T PF13191_consen   26 NLLLTGESGSGKTSLLRALLD   46 (185)
T ss_dssp             -EEE-B-TTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998874

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=90.09  E-value=0.28  Score=51.36  Aligned_cols=22  Identities=32%  Similarity=0.446  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      |+|+|++|||||||+|-+-+-.
T Consensus        34 vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          34 VAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             EEEECCCCCCHHHHHHHHhccc
Confidence            8999999999999999987644

>PF05729 NACHT: NACHT domain

Probab=90.02  E-value=0.24  Score=46.84  Aligned_cols=20  Identities=35%  Similarity=0.728  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~   29 (730)
                      ++|.|++|+|||+++.++..
T Consensus         3 l~I~G~~G~GKStll~~~~~   22 (166)
T PF05729_consen    3 LWISGEPGSGKSTLLRKLAQ   22 (166)
T ss_pred             EEEECCCCCChHHHHHHHHH
Confidence            78999999999999999875

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=89.94  E-value=0.27  Score=46.14  Aligned_cols=21  Identities=48%  Similarity=0.762  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .|+++|++|+|||+|+..+..
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~   21 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAA   21 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999998864

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=89.84  E-value=0.78  Score=38.31  Aligned_cols=43  Identities=23%  Similarity=0.322  Sum_probs=26.8

Q ss_pred             ccEEEEEeecCCCCch--hhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCC
Q psy17467         80 AHALILVYDISCQPTF--DCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTD  154 (730)
Q Consensus        80 ADaIILVyDvtd~eSf--e~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~D  154 (730)
                      +++|++++|.+....+  ++=...+++++..-                                ++.|+++|.||+|
T Consensus        14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--------------------------------~~~P~i~V~nK~D   58 (58)
T PF06858_consen   14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--------------------------------PNKPVIVVLNKID   58 (58)
T ss_dssp             -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--------------------------------TTS-EEEEE--TT
T ss_pred             cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--------------------------------CCCCEEEEEeccC
Confidence            6899999999976555  33344667776543                                5789999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=89.82  E-value=0.26  Score=45.26  Aligned_cols=21  Identities=38%  Similarity=0.762  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~   30 (730)
                      ++|.|++|+|||++++++...
T Consensus         7 ~~i~G~~G~GKT~~~~~~~~~   27 (131)
T PF13401_consen    7 LVISGPPGSGKTTLIKRLARQ   27 (131)
T ss_dssp             EEEEE-TTSSHHHHHHHHHHH
T ss_pred             cEEEcCCCCCHHHHHHHHHHH
Confidence            789999999999999999864

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=89.79  E-value=0.25  Score=47.71  Aligned_cols=22  Identities=36%  Similarity=0.572  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .|+|+|..|+|||||+..+++.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998753

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=89.75  E-value=0.6  Score=48.73  Aligned_cols=23  Identities=26%  Similarity=0.521  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      .++|+|++|+|||||++.+.+-.
T Consensus        35 ~~~i~G~nGsGKSTLl~~l~Gl~   57 (254)
T PRK14273         35 ITALIGPSGCGKSTFLRTLNRMN   57 (254)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            47899999999999999998654

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=89.68  E-value=0.28  Score=49.71  Aligned_cols=22  Identities=32%  Similarity=0.437  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++|+|++|+|||||++.+.+-
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl   53 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGL   53 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Confidence            4799999999999999999864

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=89.57  E-value=0.62  Score=48.78  Aligned_cols=23  Identities=22%  Similarity=0.498  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      .++|+|++|+|||||++-+.+..
T Consensus        32 ~~~i~G~nGsGKSTLl~~laGl~   54 (258)
T PRK14241         32 VTAFIGPSGCGKSTVLRTLNRMH   54 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            48999999999999999998754

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=89.55  E-value=1.2  Score=42.51  Aligned_cols=90  Identities=17%  Similarity=0.204  Sum_probs=50.3

Q ss_pred             EEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecC
Q psy17467         11 VLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDIS   90 (730)
Q Consensus        11 vVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvt   90 (730)
                      +.-|.+|+|||++...+...-. .....+.-.+...   ......+.+.++|+++..  .......+..+|.+++|.+.+
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~   77 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALA-KLGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE   77 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence            4557899999999766542110 0011111111110   000111668899999753  233456788999999999975


Q ss_pred             CCCchhhhHHHHHHHHH
Q psy17467         91 CQPTFDCLTDWLREIEE  107 (730)
Q Consensus        91 d~eSfe~L~~wleeI~~  107 (730)
                       ..++..+...++.+.+
T Consensus        78 -~~s~~~~~~~l~~l~~   93 (139)
T cd02038          78 -PTSITDAYALIKKLAK   93 (139)
T ss_pred             -hhHHHHHHHHHHHHHH
Confidence             4555555555555543

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=89.54  E-value=0.57  Score=48.78  Aligned_cols=23  Identities=35%  Similarity=0.652  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      .++|+|++|+|||||++.+.+-.
T Consensus        32 ~~~l~G~nGsGKSTLl~~l~G~~   54 (253)
T PRK14267         32 VFALMGPSGCGKSTLLRTFNRLL   54 (253)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            37899999999999999998753

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=89.52  E-value=0.64  Score=48.33  Aligned_cols=23  Identities=35%  Similarity=0.624  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      .++|+|++|+|||||++.+.+..
T Consensus        31 ~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247         31 ITALMGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            47999999999999999998653

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=89.47  E-value=0.3  Score=48.98  Aligned_cols=20  Identities=40%  Similarity=0.501  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q psy17467          9 KVVLVGNAGVGKTCLVRRFT   28 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl   28 (730)
                      .++++|++|+|||||++.++
T Consensus        23 ~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          23 LVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            58999999999999999875

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=89.45  E-value=0.59  Score=51.34  Aligned_cols=23  Identities=26%  Similarity=0.509  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      .++|+|++|+|||||++.+.+..
T Consensus       110 ~v~IvG~~GsGKSTLl~~L~g~~  132 (329)
T PRK14257        110 VTAFIGPSGCGKSTFLRNLNQLN  132 (329)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            58999999999999999998654

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=89.37  E-value=0.31  Score=49.48  Aligned_cols=22  Identities=32%  Similarity=0.522  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++++|++|+|||||++.+.+-
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl   52 (216)
T TIGR00960        31 MVFLVGHSGAGKSTFLKLILGI   52 (216)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999874

>PRK14532 adenylate kinase; Provisional

Probab=89.37  E-value=0.29  Score=48.56  Aligned_cols=21  Identities=24%  Similarity=0.544  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      +|+++|+||+||||+..++..
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999974

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=89.33  E-value=0.61  Score=49.25  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      .++|+|++|+|||||++.+.+..
T Consensus        48 ~~~I~G~nGsGKSTLl~~l~Gl~   70 (267)
T PRK14237         48 ITALIGPSGSGKSTYLRSLNRMN   70 (267)
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            37999999999999999998754

>PRK00300 gmk guanylate kinase; Provisional

Probab=89.29  E-value=0.29  Score=49.11  Aligned_cols=22  Identities=36%  Similarity=0.646  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      -|+|+|++|+|||||++.+.+.
T Consensus         7 ~i~i~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300          7 LIVLSGPSGAGKSTLVKALLER   28 (205)
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999999864

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=89.23  E-value=0.3  Score=48.61  Aligned_cols=23  Identities=26%  Similarity=0.473  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      .++|+|++|+|||||++.+.+-.
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999988643

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=89.23  E-value=0.66  Score=48.64  Aligned_cols=23  Identities=26%  Similarity=0.517  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      .++|+|++|+|||||++.+.+-.
T Consensus        40 ~~~i~G~nGsGKSTLl~~i~Gl~   62 (258)
T PRK14268         40 VTALIGPSGCGKSTFIRCLNRMN   62 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            38999999999999999998754

>PRK08233 hypothetical protein; Provisional

Probab=89.23  E-value=0.3  Score=47.57  Aligned_cols=23  Identities=30%  Similarity=0.419  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      +-|+|.|.+|+|||||.+++...
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhh
Confidence            45888999999999999999853

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=89.15  E-value=0.29  Score=49.01  Aligned_cols=21  Identities=24%  Similarity=0.509  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~   30 (730)
                      |.|+|++|||||||.+.+.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999998754

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=89.12  E-value=0.31  Score=49.20  Aligned_cols=23  Identities=35%  Similarity=0.538  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      .++++|++|+|||||++.+.+..
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            37999999999999999998653

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK13949 shikimate kinase; Provisional

Probab=89.11  E-value=0.32  Score=48.22  Aligned_cols=21  Identities=38%  Similarity=0.686  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      +|+|+|.+|+||||+.+.+..
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998864

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=89.10  E-value=0.65  Score=49.06  Aligned_cols=23  Identities=22%  Similarity=0.469  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      .++|+|++|+|||||++.+.+-.
T Consensus        47 ~~~i~G~nGsGKSTLl~~l~Gl~   69 (267)
T PRK14235         47 VTAFIGPSGCGKSTFLRCLNRMN   69 (267)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            37999999999999999998753

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=89.10  E-value=0.34  Score=48.65  Aligned_cols=23  Identities=22%  Similarity=0.352  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      .++|+|++|+|||||++.+.+-.
T Consensus        26 ~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        26 MYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47999999999999999998753

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>KOG0469|consensus

Probab=89.07  E-value=0.94  Score=52.19  Aligned_cols=91  Identities=15%  Similarity=0.268  Sum_probs=62.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcC------------CCCCCCC--CcceeeEEEEEEEe----------------CCe
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQG------------VFPPGQG--ATIGVDFMIKTVEI----------------NNE   54 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~------------~f~~~~~--pTig~d~~~~~i~v----------------dg~   54 (730)
                      ...=++.++..-.-|||||...|...            .|..+..  ..-+++..+..+..                ++.
T Consensus        17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~   96 (842)
T KOG0469|consen   17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN   96 (842)
T ss_pred             cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence            33346788888899999999988641            2222211  11222233322221                355


Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCch
Q psy17467         55 RIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTF   95 (730)
Q Consensus        55 ~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSf   95 (730)
                      .+.++++|.||+-+|.+-....++-.|+.+.|.|.-+..-.
T Consensus        97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCV  137 (842)
T KOG0469|consen   97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCV  137 (842)
T ss_pred             ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEe
Confidence            78899999999999999888999999999999997765433

>TIGR00235 udk uridine kinase

Probab=89.07  E-value=0.39  Score=48.73  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .-|+|+|++|+|||||++.+.+.
T Consensus         7 ~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         7 IIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            55999999999999999999753

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=89.07  E-value=0.33  Score=49.97  Aligned_cols=22  Identities=27%  Similarity=0.498  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++|+|++|+|||||++.+.+-
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~   49 (235)
T cd03261          28 ILAIIGPSGSGKSTLLRLIVGL   49 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999864

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=89.04  E-value=0.33  Score=48.86  Aligned_cols=23  Identities=30%  Similarity=0.514  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      .++|+|++|+|||||++.+.+-.
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          28 IIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            48999999999999999998753

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK02496 adk adenylate kinase; Provisional

Probab=88.98  E-value=0.35  Score=47.90  Aligned_cols=22  Identities=18%  Similarity=0.439  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .||+|+|.||+||||+...+..
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~   23 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAE   23 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=88.97  E-value=0.3  Score=54.04  Aligned_cols=22  Identities=41%  Similarity=0.605  Sum_probs=20.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      ++++|++|||||||++.+.+-.
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            8999999999999999998754

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=88.96  E-value=0.32  Score=49.15  Aligned_cols=22  Identities=36%  Similarity=0.456  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++++|++|+|||||++.+.+-
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl   48 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATL   48 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999864

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=88.93  E-value=0.68  Score=48.50  Aligned_cols=23  Identities=17%  Similarity=0.531  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      .++|+|++|+|||||++.+.+..
T Consensus        40 ~~~l~G~nGsGKSTLl~~l~G~~   62 (259)
T PRK14274         40 VTAIIGPSGCGKSTFIKTLNLMI   62 (259)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            38999999999999999998653

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=88.91  E-value=0.3  Score=48.22  Aligned_cols=22  Identities=27%  Similarity=0.604  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      +|+|+|.||+||||+...+...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998753

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=88.87  E-value=0.35  Score=49.93  Aligned_cols=22  Identities=32%  Similarity=0.566  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++|+|++|+|||||++.+.+-
T Consensus        30 ~~~l~G~nGsGKSTLl~~l~Gl   51 (243)
T TIGR02315        30 FVAIIGPSGAGKSTLLRCINRL   51 (243)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999998864

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=88.85  E-value=0.36  Score=48.77  Aligned_cols=22  Identities=36%  Similarity=0.576  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++|+|++|+|||||++.+.+-
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~G~   50 (214)
T cd03292          29 FVFLVGPSGAGKSTLLKLIYKE   50 (214)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4799999999999999999874

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=88.83  E-value=0.36  Score=49.21  Aligned_cols=22  Identities=32%  Similarity=0.415  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++|+|++|+|||||++.+.+-
T Consensus        28 ~~~i~G~nGsGKSTLl~~i~G~   49 (220)
T cd03265          28 IFGLLGPNGAGKTTTIKMLTTL   49 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999864

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG2423|consensus

Probab=88.82  E-value=0.17  Score=56.60  Aligned_cols=82  Identities=15%  Similarity=0.121  Sum_probs=48.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh--hhhHhhhccccEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR--SITQSYYRSAHAL   83 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~--sl~~~~~r~ADaI   83 (730)
                      ..|-|-+||-|||||||+||.|-..+....- |-.|-+   +..+|=--.-.|-|+|+||.-.-.  +.....+   .++
T Consensus       306 kqISVGfiGYPNvGKSSiINTLR~KkVCkvA-PIpGET---KVWQYItLmkrIfLIDcPGvVyps~dset~ivL---kGv  378 (572)
T KOG2423|consen  306 KQISVGFIGYPNVGKSSIINTLRKKKVCKVA-PIPGET---KVWQYITLMKRIFLIDCPGVVYPSSDSETDIVL---KGV  378 (572)
T ss_pred             cceeeeeecCCCCchHHHHHHHhhccccccc-CCCCcc---hHHHHHHHHhceeEecCCCccCCCCCchHHHHh---hce
Confidence            4588999999999999999999876654322 323311   111110001247889999963221  1222223   256


Q ss_pred             EEEeecCCCCc
Q psy17467         84 ILVYDISCQPT   94 (730)
Q Consensus        84 ILVyDvtd~eS   94 (730)
                      |=|=.+++++.
T Consensus       379 VRVenv~~pe~  389 (572)
T KOG2423|consen  379 VRVENVKNPED  389 (572)
T ss_pred             eeeeecCCHHH
Confidence            66777777653

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=88.78  E-value=0.36  Score=48.71  Aligned_cols=23  Identities=30%  Similarity=0.385  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      .++|+|++|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          28 IFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999999753

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=88.76  E-value=0.37  Score=48.66  Aligned_cols=23  Identities=35%  Similarity=0.524  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      .++++|++|+|||||++.+.+-.
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          28 VVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999998743

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=88.74  E-value=0.36  Score=49.44  Aligned_cols=23  Identities=35%  Similarity=0.320  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      .++|+|++|+|||||++.+.+-.
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          28 IVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999998753

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=88.74  E-value=0.77  Score=47.83  Aligned_cols=23  Identities=26%  Similarity=0.527  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      .++|+|++|+|||||++-+.+..
T Consensus        32 ~~~i~G~nGsGKSTLl~~l~Gl~   54 (251)
T PRK14249         32 ITAIIGPSGCGKSTLLRALNRMN   54 (251)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            47999999999999999998754

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=88.73  E-value=0.37  Score=48.78  Aligned_cols=22  Identities=32%  Similarity=0.513  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++++|++|+|||||++.+.+-
T Consensus        30 ~~~l~G~nGsGKSTLl~~i~Gl   51 (214)
T TIGR02673        30 FLFLTGPSGAGKTTLLKLLYGA   51 (214)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999998864

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=88.70  E-value=0.34  Score=49.22  Aligned_cols=23  Identities=30%  Similarity=0.472  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      .++|+|++|+|||||++.+.+-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          30 IFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            38999999999999999998753

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=88.70  E-value=0.36  Score=49.06  Aligned_cols=23  Identities=35%  Similarity=0.543  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      .++|+|++|+|||||++.+.+-.
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          28 IVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999887643

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=88.68  E-value=0.37  Score=48.26  Aligned_cols=23  Identities=26%  Similarity=0.413  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      .++++|++|+|||||++.+.+-.
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         28 ITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999998754

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=88.66  E-value=0.73  Score=47.88  Aligned_cols=22  Identities=27%  Similarity=0.584  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++|+|++|+|||||++.+.+-
T Consensus        31 ~~~i~G~nGsGKSTLl~~i~G~   52 (250)
T PRK14240         31 VTALIGPSGCGKSTFLRTLNRM   52 (250)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            3799999999999999999874

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=88.62  E-value=0.76  Score=48.72  Aligned_cols=23  Identities=22%  Similarity=0.551  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      .++|+|++|+|||||++.+.+..
T Consensus        52 ~~~I~G~nGsGKSTLl~~i~Gl~   74 (271)
T PRK14238         52 VTAIIGPSGCGKSTYIKTLNRMV   74 (271)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            48999999999999999999753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	730
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		8e-58
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		5e-10
3p8c_B	1128	Structure And Control Of The Actin Regulatory Wave		2e-53
3p8c_B	1128	Structure And Control Of The Actin Regulatory Wave		5e-33
3p8c_B	1128	Structure And Control Of The Actin Regulatory Wave		8e-11
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		5e-39
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		1e-36
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		1e-36
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		2e-36
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		1e-35
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		1e-35
4fmc_B	171	Espg-Rab1 Complex Length = 171		3e-35
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		5e-35
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		5e-35
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		7e-35
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		7e-35
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		9e-35
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		1e-34
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		9e-34
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		1e-33
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		6e-33
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		7e-33
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		3e-32
4fmc_F	117	Espg-Rab1 Complex Length = 117		2e-31
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		3e-31
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		4e-31
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		8e-31
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		9e-31
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		1e-30
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		1e-30
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		5e-30
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		5e-30
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		1e-06
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		8e-30
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		1e-29
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		1e-29
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		2e-29
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		9e-06
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		2e-29
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		3e-29
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		5e-29
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		7e-29
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		7e-29
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		9e-29
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		1e-28
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		2e-28
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		2e-28
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		2e-28
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		2e-28
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		1e-04
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		3e-28
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		4e-28
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		5e-28
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		1e-27
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		1e-27
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		2e-27
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		2e-27
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		5e-27
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		7e-27
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		2e-26
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		3e-26
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		2e-25
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		8e-25
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		4e-24
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		8e-24
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		8e-24
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		1e-23
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		1e-23
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		1e-23
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		2e-23
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		3e-23
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		3e-23
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		3e-23
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		5e-23
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		6e-23
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		8e-23
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		9e-23
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		1e-22
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		5e-22
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		1e-21
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		4e-04
2efc_B	181	Ara7-GdpATVPS9A Length = 181		1e-21
2efc_B	181	Ara7-GdpATVPS9A Length = 181		2e-04
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		3e-21
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		4e-04
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		3e-21
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		4e-21
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		6e-21
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		9e-05
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		1e-20
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		3e-04
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		1e-20
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		1e-20
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		7e-04
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		2e-20
1vg1_A	185	Gdp-bound Rab7 Length = 185		3e-20
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		3e-20
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		3e-20
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		5e-04
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		1e-19
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		6e-04
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		1e-19
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		1e-19
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		2e-19
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		2e-19
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		2e-19
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		2e-19
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		2e-19
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		2e-19
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		6e-19
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		3e-18
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		5e-18
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		8e-18
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		1e-17
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		2e-17
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		2e-15
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		2e-15
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		3e-15
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		3e-15
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		3e-15
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		4e-15
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		5e-15
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		6e-15
1byu_A	216	Canine Gdp-Ran Length = 216		8e-15
2bku_A	177	Kap95p:rangtp Complex Length = 177		2e-14
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		2e-14
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		2e-14
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		3e-14
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		3e-14
3icq_B	171	Karyopherin Nuclear State Length = 171		3e-14
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		4e-14
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		4e-14
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		3e-13
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		7e-13
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		3e-12
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		3e-12
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		4e-12
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		6e-12
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		7e-12
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		2e-11
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		2e-11
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		2e-11
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		4e-11
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		4e-11
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		8e-11
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		8e-11
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		2e-10
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		2e-10
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		9e-10
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		1e-09
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		1e-09
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		1e-09
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		1e-09
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		5e-09
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		6e-09
1s1c_A	183	Crystal Structure Of The Complex Between The Human		6e-09
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		6e-09
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		6e-09
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		7e-09
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		7e-09
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		7e-09
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		8e-09
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		9e-09
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		1e-08
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		1e-08
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		1e-08
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		1e-08
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		1e-08
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		1e-08
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		2e-08
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		3e-08
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		3e-08
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		3e-08
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		6e-08
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		6e-08
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		6e-08
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		6e-08
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		7e-08
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		7e-08
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		9e-08
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		1e-07
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		1e-07
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		2e-07
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-07
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		3e-07
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		3e-07
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		3e-07
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		3e-07
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		3e-07
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		3e-07
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		3e-07
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		3e-07
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		3e-07
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		3e-07
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		3e-07
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		3e-07
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		3e-07
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		3e-07
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		3e-07
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		3e-07
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		3e-07
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		3e-07
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		3e-07
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		4e-07
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		4e-07
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		4e-07
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		4e-07
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		4e-07
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		4e-07
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		4e-07
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		4e-07
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		4e-07
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		4e-07
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		4e-07
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		5e-07
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		6e-07
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		6e-07
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		6e-07
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		6e-07
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		7e-07
1mh1_A	186	Small G-Protein Length = 186		7e-07
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		8e-07
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		8e-07
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		8e-07
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		8e-07
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		8e-07
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		8e-07
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		9e-07
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		1e-06
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		1e-06
2kb0_A	178	Cdc42(T35a) Length = 178		1e-06
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		1e-06
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		1e-06
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		1e-06
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		1e-06
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		1e-06
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		1e-06
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		1e-06
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		1e-06
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		2e-06
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		2e-06
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		2e-06
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		2e-06
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		3e-06
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		3e-06
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		3e-06
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		3e-06
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		4e-06
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		4e-06
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		4e-06
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		6e-06
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		8e-06
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		8e-06
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		1e-05
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-05
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		1e-05
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-05
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		2e-05
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		2e-05
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		2e-05
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		6e-05
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		6e-05
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		7e-05
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		7e-05
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		7e-05
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		8e-05
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		2e-04
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		2e-04
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		2e-04
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		2e-04
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		2e-04
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		2e-04
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		2e-04
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		2e-04
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		3e-04
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		4e-04
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		4e-04
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		4e-04
3dpu_A	535	Roccor Domain Tandem Of Rab Family Protein (Roco) L		4e-04
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		5e-04
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		5e-04
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		5e-04
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		5e-04
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		6e-04
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		6e-04
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		6e-04
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		6e-04
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		7e-04
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		7e-04

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  221 bits (564), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 99/119 (83%), Positives = 111/119 (93%)
Query: 1   MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
           MEDY FLFK+VL+GNAGVGKTCLVRRFTQG+FPPGQGATIGVDFMIKTVEIN E++KLQI
Sbjct: 20  MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQI 79
Query: 61  WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           WDTAGQERFRSITQSYYRSA+ALIL YDI+C+ +F CL +WLREIE+YAS KV+ VLVG
Sbjct: 80  WDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVG 138

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 11/81 (13%)
Query: 173 CIPKLARNEACFYLASLEGHSNN--IHCMARNKID-REDREIPTEVGEDFAKRHDMYYLE 229
           C+P+        +L  +E +++N  I  +  NKID  E RE+  +  E+F++  DMYYLE
Sbjct: 116 CLPE--------WLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLE 167
Query: 230 TSAKASDNVEKLFMQIAAELM 250
           TSAK SDNVEKLF+ +A  L+
Sbjct: 168 TSAKESDNVEKLFLDLACRLI 188

>pdb|3P8C|B Chain B, Structure And Control Of The Actin Regulatory Wave Complex Length = 1128

Iteration: 1
 Score =  207 bits (527), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 94/146 (64%), Positives = 113/146 (77%)
Query: 407 PGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESRFSRA 466
           PG ES RK R  +T +DKLH AL+ELCF+INY  N+ VW+ TF PREYL  HLE RF+++
Sbjct: 660 PGVESMRKNRLVVTNLDKLHTALSELCFSINYVPNMVVWEHTFTPREYLTSHLEIRFTKS 719
Query: 467 LVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQRMDSH 526
           +VGM M+N  T EIAKPSELL SVRAYM VLQ++ENYV ID+TRVFNN LLQQTQ +DSH
Sbjct: 720 IVGMTMYNQATQEIAKPSELLTSVRAYMTVLQSIENYVQIDITRVFNNVLLQQTQHLDSH 779
Query: 527 GEKTVAALYIQWYSEVLLRRVSETQV 552
           GE T+ +LY  WY E LLR+VS   +
Sbjct: 780 GEPTITSLYTNWYLETLLRQVSNGHI 805

>pdb|3P8C|B Chain B, Structure And Control Of The Actin Regulatory Wave Complex Length = 1128

Iteration: 1
 Score =  139 bits (351), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 65/119 (54%), Positives = 87/119 (73%), Gaps = 5/119 (4%)
Query: 553 KSLNLLNFLRVY-----TVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSE 607
           K   LL  +R Y     ++ENYV ID+TRVFNN LLQQTQ +DSHGE T+ +LY  WY E
Sbjct: 735 KPSELLTSVRAYMTVLQSIENYVQIDITRVFNNVLLQQTQHLDSHGEPTITSLYTNWYLE 794
Query: 608 VLLRRVSAGNICFSLNQRAFVSLTAEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNE 666
            LLR+VS G+I +    +AFV+L  E  + FNAEE+SD++E+R+L++L+GPYGMK L+E
Sbjct: 795 TLLRQVSNGHIAYFPAMKAFVNLPTENELTFNAEEYSDISEMRSLSELLGPYGMKFLSE 853

>pdb|3P8C|B Chain B, Structure And Control Of The Actin Regulatory Wave Complex Length = 1128

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 672 FNAAHEMVHNQSDVNFPRLGQMIMDYEVPMKKLSEEFIPH 711
           +N AHEM H  SD  +PRLGQMI+DYE P+KK+ EEF+PH
Sbjct: 160 YNYAHEMTHGASDREYPRLGQMIVDYENPLKKMMEEFVPH 199

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  159 bits (403), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 77/164 (46%), Positives = 112/164 (68%), Gaps = 13/164 (7%)
Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
           E Y FLFK+VLVG+A VGKTC+V+RF  G F   QG+TIGVDF +KT+EI  +R+KLQIW
Sbjct: 24  EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIW 83
Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGT 121
           DTAGQERFR+ITQSYYRSA+  IL YDI+ + +F  +  W+ ++ +YA   ++++L+G  
Sbjct: 84  DTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNK 143
Query: 122 SGLKIVNEMASAAG--------LLCTVDPALATALASDKTDLDE 157
           S L  + E++ A          +LC ++ +     A D ++++E
Sbjct: 144 SDLSELREVSLAEAQSLAEHYDILCAIETS-----AKDSSNVEE 182

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  151 bits (382), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 66/123 (53%), Positives = 95/123 (77%)
Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
           +Y +LFK++L+GN+GVGK+CL+ RF+   +     +TIGVDF IKTVE++ + +KLQIWD
Sbjct: 4   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63
Query: 63  TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
           TAGQERFR+IT SYYR +H +I+VYD++ Q +F+ +  WL+EI+ YA+  VL++LVG   
Sbjct: 64  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 123
Query: 123 GLK 125
            LK
Sbjct: 124 DLK 126

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 66/123 (53%), Positives = 95/123 (77%)
Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
           +Y +LFK++L+GN+GVGK+CL+ RF+   +     +TIGVDF IKTVE++ + +KLQIWD
Sbjct: 4   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63
Query: 63  TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
           TAGQERFR+IT SYYR +H +I+VYD++ Q +F+ +  WL+EI+ YA+  VL++LVG   
Sbjct: 64  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 123
Query: 123 GLK 125
            LK
Sbjct: 124 DLK 126

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  150 bits (380), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 66/123 (53%), Positives = 95/123 (77%)
Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
           +Y +LFK++L+GN+GVGK+CL+ RF+   +     +TIGVDF IKTVE++ + +KLQIWD
Sbjct: 17  EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 76
Query: 63  TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
           TAGQERFR+IT SYYR +H +I+VYD++ Q +F+ +  WL+EI+ YA+  VL++LVG   
Sbjct: 77  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 136
Query: 123 GLK 125
            LK
Sbjct: 137 DLK 139

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  148 bits (373), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 113/165 (68%), Gaps = 14/165 (8%)
Query: 1   MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
           M +Y +LFK++L+G++GVGK+CL+ RF    +     +TIGVDF I+T+E++ + IKLQI
Sbjct: 3   MPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 62
Query: 61  WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGG 120
           WDTAGQERFR+IT SYYR AH +I+VYD++ Q ++  +  WL+EI+ YAS  V ++LVG 
Sbjct: 63  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGN 122
Query: 121 TSGL---KIVN-----EMASAAGLLCTVDPALATALASDKTDLDE 157
            S L   K+V+     E A + G+     P L T+ A + T++++
Sbjct: 123 KSDLTTKKVVDNTTAKEFADSLGI-----PFLETS-AKNATNVEQ 161

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  147 bits (372), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 113/165 (68%), Gaps = 14/165 (8%)
Query: 1   MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
           M +Y +LFK++L+G++GVGK+CL+ RF    +     +TIGVDF I+T+E++ + IKLQI
Sbjct: 3   MPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 62
Query: 61  WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGG 120
           WDTAGQERFR+IT SYYR AH +I+VYD++ Q ++  +  WL+EI+ YAS  V ++LVG 
Sbjct: 63  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGN 122
Query: 121 TSGL---KIVN-----EMASAAGLLCTVDPALATALASDKTDLDE 157
            S L   K+V+     E A + G+     P L T+ A + T++++
Sbjct: 123 KSDLTTKKVVDNTTAKEFADSLGI-----PFLETS-AKNATNVEQ 161

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  147 bits (370), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 114/170 (67%), Gaps = 14/170 (8%)
Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
           +Y +LFK++L+G++GVGK+CL+ RF    +     +TIGVDF I+T+E++ + IKLQIWD
Sbjct: 2   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 63  TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
           TAGQERFR+IT SYYR AH +I+VYD++ Q +F+ +  WL+EI+ YAS  V ++LVG   
Sbjct: 62  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 121
Query: 123 GL---KIVN-----EMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164
            L   K+V+     E A + G+     P L T+ A + T++++    +A 
Sbjct: 122 DLTTKKVVDYTTAKEFADSLGI-----PFLETS-AKNATNVEQSFMTMAA 165

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  146 bits (368), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 113/170 (66%), Gaps = 14/170 (8%)
Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
           +Y +LFK++L+G++GVGK CL+ RF    +     +TIGVDF I+T+E++ + IKLQIWD
Sbjct: 12  EYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 71
Query: 63  TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
           TAGQERFR+IT SYYR AH +I+VYD++ Q +F+ +  WL+EI+ YAS  V ++LVG   
Sbjct: 72  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 131
Query: 123 GL---KIVN-----EMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164
            L   K+V+     E A + G+     P L T+ A + T++++    +A 
Sbjct: 132 DLTTKKVVDYTTAKEFADSLGI-----PFLETS-AKNATNVEQSFMTMAA 175

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  146 bits (368), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 63/117 (53%), Positives = 91/117 (77%)
Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
           +Y +LFK++L+G++GVGK+CL+ RF    +     +TIGVDF I+T+E++ + IKLQIWD
Sbjct: 12  EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 71
Query: 63  TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           TAGQERFR+IT SYYR AH +I+VYD++ Q +F+ +  WL+EI+ YAS  V ++LVG
Sbjct: 72  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 128

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  145 bits (367), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 114/170 (67%), Gaps = 14/170 (8%)
Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
           +Y +LFK++L+G++GVGK+CL+ RF    +     +TIGVDF I+T+E++ + IKLQIWD
Sbjct: 21  EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 80
Query: 63  TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
           TAGQERFR+IT SYYR AH +I+VYD++ Q +F+ +  WL+EI+ YAS  V ++LVG   
Sbjct: 81  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 140
Query: 123 GL---KIVN-----EMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164
            L   K+V+     E A + G+     P L T+ A + T++++    +A 
Sbjct: 141 DLTTKKVVDYTTAKEFADSLGI-----PFLETS-AKNATNVEQSFMTMAA 184

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  145 bits (367), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 63/117 (53%), Positives = 91/117 (77%)
Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
           +Y +LFK++L+G++GVGK+CL+ RF    +     +TIGVDF I+T+E++ + IKLQIWD
Sbjct: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
Query: 63  TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           TAGQERFR+IT SYYR AH +I+VYD++ Q +F+ +  WL+EI+ YAS  V ++LVG
Sbjct: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 120

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  145 bits (366), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 74/163 (45%), Positives = 112/163 (68%), Gaps = 14/163 (8%)
Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
           +Y +LFK++L+G++GVGK+CL+ RF    +     +TIGVDF I+T+E++ + IKLQIWD
Sbjct: 29  EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 88
Query: 63  TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
           TAGQERFR+IT SYYR AH +I+VYD++ Q +F+ +  WL+EI+ YAS  V ++LVG   
Sbjct: 89  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 148
Query: 123 GL---KIVN-----EMASAAGLLCTVDPALATALASDKTDLDE 157
            L   K+V+     E A + G+     P L T+ A + T++++
Sbjct: 149 DLTTKKVVDYTTAKEFADSLGI-----PFLETS-AKNATNVEQ 185

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  144 bits (364), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 113/170 (66%), Gaps = 14/170 (8%)
Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
           +Y  LFK++L+G++GVGK+CL+ RF    +     +TIGVDF I+T+E++ + IKLQIWD
Sbjct: 2   EYDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 63  TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
           TAGQERFR+IT SYYR AH +I+VYD++ Q +F+ +  WL+EI+ YAS  V ++LVG   
Sbjct: 62  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 121
Query: 123 GL---KIVN-----EMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164
            L   K+V+     E A + G+     P L T+ A + T++++    +A 
Sbjct: 122 DLTTKKVVDYTTAKEFADSLGI-----PFLETS-AKNATNVEQSFMTMAA 165

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  142 bits (357), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 60/117 (51%), Positives = 89/117 (76%)
Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
           +Y +LFK++L+G++GVGK+CL+ RF    +     +TIGVDF I+T+ + N+ +KLQIWD
Sbjct: 5   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWD 64
Query: 63  TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           TAGQERFR+IT SYYR AH +I+VYD++ + +FD +  W++EI+ YA   V ++LVG
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVG 121

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  141 bits (356), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 65/153 (42%), Positives = 106/153 (69%)
Query: 4   YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
           Y +LFK++L+G++GVGKTC++ RF++  F     +TIG+DF I+T+E++ +RIKLQIWDT
Sbjct: 5   YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64
Query: 64  AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSG 123
           AGQERFR+IT +YYR A  ++LVYDI+ + +FD + +W+R IEE+AS  V ++++G    
Sbjct: 65  AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124
Query: 124 LKIVNEMASAAGLLCTVDPALATALASDKTDLD 156
           +    +++   G    +D  +     S K +++
Sbjct: 125 VNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  139 bits (350), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 64/151 (42%), Positives = 105/151 (69%)
Query: 6   FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
           +LFK++L+G++GVGKTC++ RF++  F     +TIG+DF I+T+E++ +RIKLQIWDTAG
Sbjct: 5   YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG 64
Query: 66  QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLK 125
           QERFR+IT +YYR A  ++LVYDI+ + +FD + +W+R IEE+AS  V ++++G    + 
Sbjct: 65  QERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN 124
Query: 126 IVNEMASAAGLLCTVDPALATALASDKTDLD 156
              +++   G    +D  +     S K +++
Sbjct: 125 DKRQVSKERGEKLALDYGIKFMETSAKANIN 155

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  139 bits (349), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 109/164 (66%), Gaps = 14/164 (8%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K++L+G++GVGK+CL+ RF    +     +TIGVDF I+T+E++ + IKLQIWDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL---K 125
           FR+IT SYYR AH +I+VYD++ Q +F+ +  WL+EI+ YAS  V ++LVG    L   K
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 126 IVN-----EMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164
           +V+     E A + G+     P L T+ A + T++++    +A 
Sbjct: 121 VVDYTTAKEFADSLGI-----PFLETS-AKNATNVEQSFMTMAA 158

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  137 bits (344), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 61/117 (52%), Positives = 86/117 (73%), Gaps = 1/117 (0%)
Query: 4   YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQG-ATIGVDFMIKTVEINNERIKLQIWD 62
           Y   FKV+LVG++GVGKTCL+ RF  G F  G   +T+G+DF  K ++++  ++KLQ+WD
Sbjct: 7   YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 66
Query: 63  TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           TAGQERFRS+T +YYR AHAL+L+YD++ + +FD +  WL EI EYA   V  +L+G
Sbjct: 67  TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLG 123

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  134 bits (337), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/115 (52%), Positives = 86/115 (74%)
Query: 10  VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERF 69
           ++L+G++GVGK+CL+ RF    +     +TIGVDF I+T+E++ + IKLQIWDTAGQERF
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 70  RSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
           R+IT SYYR AH +I+VYD++ Q +F+ +  WL+EI+ YAS  V ++LVG    L
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  134 bits (336), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 58/122 (47%), Positives = 88/122 (72%)
Query: 4   YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
           Y  + K++L+G++GVGK+CL+ RF +  F P    TIG+DF IKTV+IN +++KLQ+WDT
Sbjct: 17  YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 76
Query: 64  AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSG 123
           AGQERFR+IT +YYR A  +ILVYD++ + TF  +  W + + E+A+ +   +LVG  S 
Sbjct: 77  AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 136
Query: 124 LK 125
           ++
Sbjct: 137 ME 138

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  133 bits (334), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 61/117 (52%), Positives = 82/117 (70%), Gaps = 1/117 (0%)
Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
           DY  LFK++++G++GVGK+ L+ RF    F      TIGVDF I+TVEIN E++KLQIWD
Sbjct: 5   DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWD 64
Query: 63  TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           TAGQERFR+IT +YYR  H +I+VYD++   +F  +  WL EI +     V R+LVG
Sbjct: 65  TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVG 120

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  132 bits (331), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 59/119 (49%), Positives = 87/119 (73%)
Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
           + K++L+G++GVGK+CL+ RF +  F P    TIG+DF IKTV+IN +++KLQIWDTAGQ
Sbjct: 3   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 62
Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLK 125
           ERFR+IT +YYR A  +ILVYDI+ + TF  +  W + + E+A+ +   +LVG  S ++
Sbjct: 63  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  132 bits (331), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 57/119 (47%), Positives = 87/119 (73%)
Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
           + K++L+G++GVGK+CL+ RF +  F P    TIG+DF IKTV+IN +++KLQ+WDTAGQ
Sbjct: 7   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLK 125
           ERFR+IT +YYR A  +ILVYD++ + TF  +  W + + E+A+ +   +LVG  S ++
Sbjct: 67  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 125

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  131 bits (329), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 59/116 (50%), Positives = 85/116 (73%)
Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
           + K++L+G++GVGK+CL+ RF +  F P    TIG+DF IKTV+IN +++KLQIWDTAGQ
Sbjct: 3   IXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 62
Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
           ERFR+IT +YYR A  +ILVYDI+ + TF  +  W + + E+A+ +   +LVG  S
Sbjct: 63  ERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKS 118

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  131 bits (329), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 62/114 (54%), Positives = 83/114 (72%)
Query: 6   FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
           F  +V+++G+ GVGKT L+ RFT   F     +T+GVDF IKTVE+  ++I+LQIWDTAG
Sbjct: 25  FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAG 84
Query: 66  QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           QERF SIT +YYRSA  +ILVYDI+ + TFD L  W++ I++YAS     +LVG
Sbjct: 85  QERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVG 138

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  129 bits (325), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 57/116 (49%), Positives = 85/116 (73%)
Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
           + K++L+G++GVGK+CL+ RF +  F P    TIG+DF IKTV+IN +++KLQ+WDTAGQ
Sbjct: 3   IXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 62
Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
           ERFR+IT +YYR A  +ILVYD++ + TF  +  W + + E+A+ +   +LVG  S
Sbjct: 63  ERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKS 118

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  129 bits (324), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 60/132 (45%), Positives = 90/132 (68%)
Query: 4   YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
           Y +LFK +++G+ GVGK+CL+ +FT   F P    TIGV+F  + + I+ ++IKLQIWDT
Sbjct: 7   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 66
Query: 64  AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSG 123
           AGQE FRSIT+SYYR A   +LVYDI+ + TF+ LT WL +  ++++  ++ +L+G  S 
Sbjct: 67  AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 126
Query: 124 LKIVNEMASAAG 135
           L+   E+    G
Sbjct: 127 LESRREVKKEEG 138

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 180 NEACFYLASLEGHSNN--IHCMARNKIDREDR-EIPTEVGEDFAKRHDMYYLETSAKASD 236
           N    +L     HSN+  +  +  NK D E R E+  E GE FA+ H + ++ETSAK + 
Sbjct: 99  NHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTAS 158
Query: 237 NVEKLFMQIAAELMEK 252
           NVE+ F+  A E+ EK
Sbjct: 159 NVEEAFINTAKEIYEK 174

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  129 bits (323), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 60/122 (49%), Positives = 82/122 (67%)
Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
           DY  LFK+VL+G++GVGK+ L+ RFT+  F     +TIGV+F  +T+EI  +RIK QIWD
Sbjct: 9   DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWD 68
Query: 63  TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
           TAGQER+R+IT +YYR A   ++VYDIS   +++    WL E+ E A   V   L+G  S
Sbjct: 69  TAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKS 128
Query: 123 GL 124
            L
Sbjct: 129 DL 130

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  128 bits (322), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 57/118 (48%), Positives = 81/118 (68%)
Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
           E Y FLFK +++GNAG GK+CL+ +F +  F      TIGV+F  K + +  + +KLQIW
Sbjct: 5   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64
Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           DTAGQERFRS+T+SYYR A   +LVYDI+ + T++ LT+WL +    AS  ++ +L G
Sbjct: 65  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 122

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 57/118 (48%), Positives = 81/118 (68%)
Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
           E Y FLFK +++GNAG GK+CL+ +F +  F      TIGV+F  K + +  + +KLQIW
Sbjct: 6   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 65
Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           DTAGQERFRS+T+SYYR A   +LVYDI+ + T++ LT+WL +    AS  ++ +L G
Sbjct: 66  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 123

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  127 bits (320), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 97/154 (62%)
Query: 6   FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
           +LFK +++G+ GVGK+CL+ +FT   F P    TIGV+F  + V I+ ++IKLQIWDTAG
Sbjct: 20  YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 66  QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLK 125
           QE FRSIT+SYYR A   +LVYDI+ + TF+ LT WL +  +++S  ++ +L+G  S L+
Sbjct: 80  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139
Query: 126 IVNEMASAAGLLCTVDPALATALASDKTDLDEDE 159
              ++    G     +  L     S KT  + +E
Sbjct: 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEE 173

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 193 SNNIHCMARNKIDREDR-EIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
           SN +  +  NK D E R ++  E GE FA+ H + ++ETSAK + NVE+ F+  A E+  
Sbjct: 125 SNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 184
Query: 252 KLAEKL 257
           K+ + L
Sbjct: 185 KIQQGL 190

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 56/124 (45%), Positives = 90/124 (72%)
Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
           ++Y +LFKVVL+G++GVGK+ L+ RFT+  F     +TIGV+F  ++++++ + IK QIW
Sbjct: 24  DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 83
Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGT 121
           DTAGQER+R+IT +YYR A   +LVYDI+   T++ +  WL+E+ ++A   ++ +LVG  
Sbjct: 84  DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 143
Query: 122 SGLK 125
           S L+
Sbjct: 144 SDLR 147

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  127 bits (318), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 56/122 (45%), Positives = 87/122 (71%)
Query: 4   YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
           Y +LFKVVL+G++GVGK+ L+ RFT+  F     +TIGV+F  ++++++ + IK QIWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 64  AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSG 123
           AGQER+R IT +YYR A   +LVYDI+   T++ +  WL+E+ ++A   ++ +LVG  S 
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121
Query: 124 LK 125
           L+
Sbjct: 122 LR 123

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  126 bits (316), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 56/122 (45%), Positives = 88/122 (72%)
Query: 4   YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
           Y +LFKVVL+G++GVGK+ L+ RFT+  F     +TIGV+F  ++++++ + IK QIWDT
Sbjct: 17  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 76
Query: 64  AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSG 123
           AGQER+R+IT +YYR A   +LVYDI+   T++ +  WL+E+ ++A   ++ +LVG  S 
Sbjct: 77  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 136
Query: 124 LK 125
           L+
Sbjct: 137 LR 138

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  125 bits (315), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 59/130 (45%), Positives = 85/130 (65%)
Query: 1   MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
           MEDY F+FKVVL+G +GVGKT L+ RFT+  F      TIGV+F  +TV +    +K QI
Sbjct: 4   MEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQI 63
Query: 61  WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGG 120
           WDTAG ER+R+IT +YYR A   +LV+D++   T+  +  WL+E+ ++A   ++ +LVG 
Sbjct: 64  WDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGN 123
Query: 121 TSGLKIVNEM 130
            S L    E+
Sbjct: 124 KSDLSQAREV 133

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  125 bits (315), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 58/122 (47%), Positives = 82/122 (67%)
Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
           DY +LFK+VL+G++GVGK+ L+ RFT   F     +TIGV+F  +T+E+ N++IK QIWD
Sbjct: 6   DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWD 65
Query: 63  TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
           TAG ER+R+IT +YYR A   ++VYDIS   +++    WL E+ E A   V   L+G  S
Sbjct: 66  TAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKS 125
Query: 123 GL 124
            L
Sbjct: 126 DL 127

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  125 bits (314), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 57/123 (46%), Positives = 81/123 (65%)
Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
           E Y FLFK +++GNAG GK+CL+ +F +  F      TIGV+F  K + +  + +KLQIW
Sbjct: 3   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 62
Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGT 121
           DTAG ERFRS+T+SYYR A   +LVYDI+ + T++ LT+WL +    AS  ++ +L G  
Sbjct: 63  DTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 122
Query: 122 SGL 124
             L
Sbjct: 123 KDL 125

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 55/124 (44%), Positives = 89/124 (71%)
Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
           ++Y +LFKVVL+G++GVGK+ L+ RFT+  F     +TIGV+F  ++++++ + IK QIW
Sbjct: 3   DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 62
Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGT 121
           DTAG ER+R+IT +YYR A   +LVYDI+   T++ +  WL+E+ ++A   ++ +LVG  
Sbjct: 63  DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 122
Query: 122 SGLK 125
           S L+
Sbjct: 123 SDLR 126

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/124 (44%), Positives = 88/124 (70%)
Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
           ++Y +LFKVVL+G++GVGK+ L+ RFT+  F     +TIGV+F  ++++++ + IK QIW
Sbjct: 6   DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 65
Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGT 121
           DTAG ER+R+IT +YYR A   +LVYDI+   T++ +  WL+E+ ++A   ++  LVG  
Sbjct: 66  DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNK 125
Query: 122 SGLK 125
           S L+
Sbjct: 126 SDLR 129

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/124 (44%), Positives = 89/124 (71%)
Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
           ++Y +LFKVVL+G++GVGK+ L+ RFT+  F     +TIGV+F  ++++++ + IK QIW
Sbjct: 24  DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 83
Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGT 121
           DTAG ER+R+IT +YYR A   +LVYDI+   T++ +  WL+E+ ++A   ++ +LVG  
Sbjct: 84  DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 143
Query: 122 SGLK 125
           S L+
Sbjct: 144 SDLR 147

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/121 (47%), Positives = 84/121 (69%), Gaps = 2/121 (1%)
Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
           +FK++++G++ VGKTCL  RF  G FP    ATIGVDF  + V+I+ ERIK+Q+WDTAGQ
Sbjct: 20  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 67  ERFR-SITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY-ASFKVLRVLVGGTSGL 124
           ERFR S+ Q YYR+ HA++ VYD++   +F  L  W+ E +++  +  + R+LVG    L
Sbjct: 80  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 125 K 125
           +
Sbjct: 140 R 140

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  124 bits (311), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/119 (48%), Positives = 81/119 (68%), Gaps = 1/119 (0%)
Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
           ED     K++++G +GVGK+ L+ RFT   F P   ATIGVDF +KT+ ++  + KL IW
Sbjct: 10  EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW 69
Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFK-VLRVLVG 119
           DTAGQERFR++T SYYR A  +ILVYD++ + TF  L +WL E+E Y +   ++  LVG
Sbjct: 70  DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVG 128

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 196 IHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAE 255
           ++ +  NKID+E+RE+    G  FA++H   ++E SAK  D V+  F     EL+EK+ +
Sbjct: 123 VNXLVGNKIDKENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAF----EELVEKIIQ 178

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  124 bits (310), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 52/117 (44%), Positives = 83/117 (70%)
Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
           ++ ++FK++++GN+ VGKT  + R+    F P   +T+G+DF +KT+  N++RIKLQIWD
Sbjct: 1   NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60
Query: 63  TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           TAGQER+R+IT +YYR A   IL+YDI+ + +F+ + DW  +I+ Y+      +LVG
Sbjct: 61  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVG 117

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  123 bits (308), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 57/121 (47%), Positives = 83/121 (68%), Gaps = 2/121 (1%)
Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
           +FK++++G++ VGKTCL  RF  G FP    ATIGVDF  + V+I+ ERIK+Q+WDTAGQ
Sbjct: 29  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 67  ERFR-SITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY-ASFKVLRVLVGGTSGL 124
           ERFR S+ Q YYR+ HA++ VYD +   +F  L  W+ E +++  +  + R+LVG    L
Sbjct: 89  ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 148
Query: 125 K 125
           +
Sbjct: 149 R 149

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  122 bits (307), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 58/131 (44%), Positives = 85/131 (64%)
Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
           EDY F+FKVVL+G +GVGKT L+ RFT+  F      TIGV+F  +TV +    +K QIW
Sbjct: 20  EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIW 79
Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGT 121
           DTAG ER+R+IT +YYR A   +LV+D++   T+  +  WL+E+ ++A   ++ +LVG  
Sbjct: 80  DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNK 139
Query: 122 SGLKIVNEMAS 132
           S L    E+ +
Sbjct: 140 SDLSQAREVPT 150

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 51/117 (43%), Positives = 82/117 (70%)
Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
           ++ ++FK++++GN+ VGKT  + R+    F P   +T+G+DF +KTV  + +R+KLQIWD
Sbjct: 19  NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWD 78
Query: 63  TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           TAGQER+R+IT +YYR A   IL+YDI+ + +F+ + DW  +I+ Y+      +LVG
Sbjct: 79  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVG 135

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  121 bits (304), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/123 (47%), Positives = 89/123 (72%), Gaps = 1/123 (0%)
Query: 4   YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEI-NNERIKLQIWD 62
           Y +LFK+VL+G++GVGK+ L+ RFT+  F     +TIGV+F  K++++ NN+ IK QIWD
Sbjct: 4   YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWD 63
Query: 63  TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
           TAGQER+R+IT +YYR A   +LVYDI+ + +F+ +  WL+E+ + A   ++ +LVG  S
Sbjct: 64  TAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKS 123
Query: 123 GLK 125
            LK
Sbjct: 124 DLK 126

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 51/123 (41%), Positives = 86/123 (69%)
Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
           +Y ++FK +++G+ GVGK+CL+ +FT+  F      TIGV+F  + +E++ ++IKLQIWD
Sbjct: 11  NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 70
Query: 63  TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
           TAGQERFR++T+SYYR A   ++VYDI+ + T++ L+ WL +     +   + +L+G  +
Sbjct: 71  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKA 130
Query: 123 GLK 125
            L+
Sbjct: 131 DLE 133

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/120 (45%), Positives = 82/120 (68%)
Query: 6   FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
           ++FK++L+GN+ VGKT  + R+    F P   +T+G+DF +KTV  +++RIKLQIWDTAG
Sbjct: 21  YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAG 80
Query: 66  QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLK 125
           QER+R+IT +YYR A   +L+YDI+ Q +F  + DW  +I+ Y+      +LVG    L+
Sbjct: 81  QERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE 140

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  119 bits (298), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 55/123 (44%), Positives = 87/123 (70%)
Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
           +Y +LFKVVL+G++GVGK+ L+ RFT+  F     +TIGV+F  ++++++ + IK QIWD
Sbjct: 1   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 60
Query: 63  TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
           TAG ER+R+IT +YYR A   +LVYDI+   T++ +  WL+E+ ++A   ++  LVG  S
Sbjct: 61  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKS 120
Query: 123 GLK 125
            L+
Sbjct: 121 DLR 123

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  119 bits (297), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 53/114 (46%), Positives = 77/114 (67%)
Query: 6   FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
           FLFK +++G+AG GK+CL+ +F +  F      TIGV+F  + V +  + +KLQIWDTAG
Sbjct: 24  FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAG 83
Query: 66  QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           QERFRS+T+SYYR A   +LVYDI+ + T++ L  WL +    AS  ++ +L G
Sbjct: 84  QERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCG 137

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 50/123 (40%), Positives = 85/123 (69%)
Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
           +Y ++FK +++G+ GVGK+CL+ +FT+  F      TIGV+F  + +E++ ++IKLQIWD
Sbjct: 26  NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 85
Query: 63  TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
           TAGQ RFR++T+SYYR A   ++VYDI+ + T++ L+ WL +     +   + +L+G  +
Sbjct: 86  TAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKA 145
Query: 123 GLK 125
            L+
Sbjct: 146 DLE 148

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  117 bits (292), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/116 (43%), Positives = 79/116 (68%)
Query: 4   YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
           + + FK++++GN+ VGKT  + R+    F P   +T+G+DF +KT+  N++RIKLQIWDT
Sbjct: 5   FDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64
Query: 64  AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           AG ER+R+IT +YYR A   IL YDI+ + +F+ + DW  +I+ Y+      +LVG
Sbjct: 65  AGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVG 120

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/123 (43%), Positives = 75/123 (60%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            KV L+G+ GVGK+ +V RF +  F P    TIG  FM KTV+  NE  K  IWDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIV 127
           RFR++   YYR + A I+VYDI+ + TF  L +W+RE+ ++    ++  + G    L  V
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 128 NEM 130
            E+
Sbjct: 126 REV 128

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  112 bits (280), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 85/131 (64%), Gaps = 3/131 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +K+VL G+A VGK+  + R  +  F     AT+GVDF +KT+ ++ ER  LQ+WDTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIV 127
           RFRSI +SY+R A  ++L+YD++C+ +F  + +W+  IE+ A   V  +LVG  + ++  
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR-- 146
Query: 128 NEMASAAGLLC 138
            + A+  G  C
Sbjct: 147 -DTAATEGQKC 156

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/123 (42%), Positives = 74/123 (60%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            KV L+G+ GVGK+ ++ RF +  F P    TIG  FM KTV+  NE  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIV 127
           RFR++   YYR + A I+VYDI+ + TF  L +W+RE+ ++    ++  + G    L  V
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 128 NEM 130
            E+
Sbjct: 127 REV 129

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  108 bits (271), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 51/117 (43%), Positives = 76/117 (64%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VL+G + VGK+ LV RF +G F   Q +TIG  F+ +TV +++  +K +IWDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
           R+ S+   YYR A A I+VYDI+   TF    +W++E++  AS  ++  L G  + L
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 120

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  108 bits (271), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 51/117 (43%), Positives = 76/117 (64%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VL+G + VGK+ LV RF +G F   Q +TIG  F+ ++V +++  +K +IWDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
           R+ S+   YYR A A I+VYDI+ Q TF     W++E++  AS  ++  L G  + L
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADL 125

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 77/117 (65%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VL+G + VGK+ LV RF +G F   Q +TIG  F+ +TV +++  +K +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
           R+ S+   YYR A A I+VYDI+ + +F    +W++E++  AS  ++  L G  + L
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 124

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 77/117 (65%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VL+G + VGK+ LV RF +G F   Q +TIG  F+ +TV +++  +K +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
           R+ S+   YYR A A I+VYDI+ + +F    +W++E++  AS  ++  L G  + L
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 124

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 77/117 (65%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VL+G + VGK+ LV RF +G F   Q +TIG  F+ +TV +++  +K +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
           R+ S+   YYR A A I+VYDI+ + +F    +W++E++  AS  ++  L G  + L
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 77/117 (65%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VL+G + VGK+ LV RF +G F   Q +TIG  F+ +TV +++  +K +IWDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
           R+ S+   YYR A A I+VYDI+ + +F    +W++E++  AS  ++  L G  + L
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 77/117 (65%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VL+G + VGK+ LV RF +G F   Q +TIG  F+ +TV +++  +K +IWDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
           R+ S+   YYR A A I+VYDI+ + +F    +W++E++  AS  ++  L G  + L
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 77/117 (65%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VL+G + VGK+ LV RF +G F   Q +TIG  F+ +TV +++  +K +IWDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
           R+ S+   YYR A A I+VYDI+ + +F    +W++E++  AS  ++  L G  + L
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 77/117 (65%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VL+G + VGK+ LV RF +G F   Q +TIG  F+ +TV +++  +K +IWDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
           R+ S+   YYR A A I+VYDI+ + +F    +W++E++  AS  ++  L G  + L
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 77/117 (65%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VL+G + VGK+ LV RF +G F   Q +TIG  F+ +TV +++  +K +IWDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
           R+ S+   YYR A A I+VYDI+ + +F    +W++E++  AS  ++  L G  + L
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 52/123 (42%), Positives = 72/123 (58%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            KV L+G+ GVGK+ +V RF Q  F      TIG  FM KTV   NE  K  IWDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIV 127
           RF S+   YYR + A ++VYDI+ Q +F  L  W++E++E+    ++  + G    L  +
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 128 NEM 130
            E+
Sbjct: 144 REV 146

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  105 bits (262), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 75/117 (64%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VL+G + VGK+ LV RF +G F   Q +TI   F+ +TV +++  +K +IWDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
           R+ S+   YYR A A I+VYDI+   TF    +W++E++  AS  ++  L G  + L
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 122

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  105 bits (262), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 75/117 (64%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VL+G + VGK+ LV RF +G F   Q +TIG  F+ +TV +++  +K +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
           R+ S+   YYR A A I+VYDI+   TF    +W++E++  AS  ++  L G  + L
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 122

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/117 (41%), Positives = 76/117 (64%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VL+G + VGK+ LV RF +G F   Q +TIG  F+ +TV +++  +K +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
           R+ S+   YYR A A I+VYDI+ + +F    +W++E++  AS  ++  L G  + L
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 122

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score =  103 bits (256), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 70/98 (71%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K+V+VGN  VGK+ +++R+ +G+F      TIGVDF+ + +++N+E ++L +WDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
            F +IT++YYR A A +LV+  + + +F+ ++ W  ++
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKV 103

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  102 bits (253), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 72/117 (61%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+V +G   VGKT L+ RF    F     ATIG+DF+ KT+ + +  I+LQ+WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
           RFRS+  SY R + A ++VYDI+   +F   T W+ ++       V+ +LVG  + L
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 123

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 190 EGHSNNIHCMARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE 248
           E  S+ I  +  NK D  D R++  E GE  AK  ++ ++ETSAKA  NV++LF ++AA 
Sbjct: 107 ERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 166
Query: 249 L 249
           L
Sbjct: 167 L 167

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 73/116 (62%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+VL+G+ G GK+ LV RF +  F   Q +TIG  F  +T+ +N+  +K +IWDTAGQER
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
           + S+   YYR A A I+V+D++ Q +F+    W++E++   +  ++  L G  S L
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDL 129

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDRED-REIPTEVGEDFAK 221
           A  ++VF         R +        +G+ N +  +A NK D  D R++  E  + +A+
Sbjct: 86  AAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQ 145
Query: 222 RHDMYYLETSAKASDNVEKLFMQIAAEL 249
            + ++++ETSAK + NV+++F +IA  L
Sbjct: 146 ENGLFFMETSAKTATNVKEIFYEIARRL 173

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 71/117 (60%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+V +G   VGKT L+ RF    F     ATIG+DF+ KT+ + +  ++LQ+WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
           RFRS+  SY R +   ++VYDI+   +F   T W+ ++       V+ +LVG  + L
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 118

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 190 EGHSNNIHCMARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE 248
           E  S+ I  +  NK D  D R++  E GE  AK  ++ ++ETSAKA  NV++LF ++AA 
Sbjct: 102 ERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 161
Query: 249 L 249
           L
Sbjct: 162 L 162

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  100 bits (248), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/117 (41%), Positives = 74/117 (63%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +K+V +G   VGKT ++ RF    F     +TIG+DF+ KT+ ++   ++LQ+WDTAGQE
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
           RFRS+  SY R + A I+VYDI+ + +F+  T W+++I       V+  LVG  + L
Sbjct: 62  RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDL 118

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  100 bits (248), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/111 (43%), Positives = 69/111 (62%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+VL+G A VGK+ +V RF    F   +  TIG  F+ + V IN   +K +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           F S+   YYR+A A ++VYD++   +F     W++E+ E AS  ++  LVG
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVG 115

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 99.8 bits (247), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 76/128 (59%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+V +G   VGKT L+ RF    F     ATIG+DF+ KT+ + +  ++LQ+WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIV 127
           RFRS+  SY R +   ++VYDI+   +F   + W+ ++       V+ +LVG  + L   
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 128 NEMASAAG 135
            ++++  G
Sbjct: 135 RQVSTEEG 142

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 190 EGHSNNIHCMARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE 248
           E  S+ I  +  NK D  D R++ TE GE  AK  ++ ++ETSAKA  NV++LF ++AA 
Sbjct: 115 ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 174
Query: 249 L 249
           L
Sbjct: 175 L 175

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 71/117 (60%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+V +G   VGKT L+ RF    F     ATIG+DF+ KT+ + +  ++LQ+WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
           RFRS+  SY R +   ++VYDI+   +F   + W+ ++       V+ +LVG  + L
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDL 119

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 190 EGHSNNIHCMARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE 248
           E  S+ I  +  NK D  D R+I  E GE  AK   + ++ETSAK   NV++LF ++A+ 
Sbjct: 103 ERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASA 162
Query: 249 LME 251
           L+E
Sbjct: 163 LLE 165

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 70/114 (61%)
Query: 6   FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
           + FKVVL+G   VGKT LV R+ +  F      T+G  F+ K + I  +R+ L IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 66  QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           QERF ++   YYR ++  ILVYDI+ + +F  + +W++E+ +    ++   +VG
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVG 118

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/117 (41%), Positives = 71/117 (60%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+V +G   VGKT L+ RF    F     ATIG+DF+ KT+ + +  I+LQ+WDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
           RFRS+  SY R + A ++VYDI+   +F   T W+ ++       V+ +LVG  + L
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 130

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 190 EGHSNNIHCMARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE 248
           E  S+ I  +  NK D  D R++  E GE  AK  ++ ++ETSAKA  NV++LF ++AA 
Sbjct: 114 ERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 173
Query: 249 L 249
           L
Sbjct: 174 L 174

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 65/101 (64%)
Query: 5   KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTA 64
           K L KV+++G++GVGKT L+ ++    F     ATIG DF+ K V +++  + +QIWDTA
Sbjct: 6   KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTA 65
Query: 65  GQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
           GQERF+S+  ++YR A   +LV+D++   TF  L  W  E 
Sbjct: 66  GQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEF 106

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 97.4 bits (241), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 65/100 (65%)
Query: 5   KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTA 64
           K L KV+++G++GVGKT L+ ++    F     ATIG DF+ K V +++  + +QIWDTA
Sbjct: 6   KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTA 65
Query: 65  GQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLRE 104
           GQERF+S+  ++YR A   +LV+D++   TF  L  W  E
Sbjct: 66  GQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDE 105

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 97.4 bits (241), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 65/101 (64%)
Query: 5   KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTA 64
           K L KV+++G++GVGKT L+ ++    F     ATIG DF+ K V +++  + +QIWDTA
Sbjct: 6   KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTA 65
Query: 65  GQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
           GQERF+S+  ++YR A   +LV+D++   TF  L  W  E 
Sbjct: 66  GQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEF 106

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 97.4 bits (241), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 70/117 (59%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+V +G   VGKT L+ RF    F     ATIG+DF+ KT+ + +  ++LQ+WDTAG E
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
           RFRS+  SY R +   ++VYDI+   +F   T W+ ++       V+ +LVG  + L
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 123

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 190 EGHSNNIHCMARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE 248
           E  S+ I  +  NK D  D R++  E GE  AK  ++ ++ETSAKA  NV++LF ++AA 
Sbjct: 107 ERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 166
Query: 249 L 249
           L
Sbjct: 167 L 167

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 70/117 (59%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+V +G   VGKT L+ RF    F     ATIG+DF+ KT+ + +  ++LQ+WDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
           RFRS+  SY R +   ++VYDI+   +F   T W+ ++       V+ +LVG  + L
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 133

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 190 EGHSNNIHCMARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE 248
           E  S+ I  +  NK D  D R++  E GE  AK  ++ ++ETSAKA  NV++LF ++AA 
Sbjct: 117 ERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 176
Query: 249 L 249
           L
Sbjct: 177 L 177

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 69/114 (60%)
Query: 6   FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
           + FKVVL+G   VGKT LV R+ +  F      T+   F+ K + I  +R+ L IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 66  QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           QERF ++   YYR ++  ILVYDI+ + +F  + +W++E+ +    ++   +VG
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVG 118

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 66/106 (62%)
Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
           LFKV+L+G+ GVGK+ L+ R+    F      TIGV+F+ K +E++   + +QIWDTAGQ
Sbjct: 7   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFK 112
           ERFRS+   +YR +   +L + +    +F  L++W +E   YA  K
Sbjct: 67  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVK 112

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 81/137 (59%), Gaps = 9/137 (6%)
Query: 5   KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERI-KLQIWDT 63
           K + KV+++G++GVGKT L+ R+    +     ATIG DF+ K V ++ +++  +Q+WDT
Sbjct: 6   KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDT 65
Query: 64  AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYAS--------FKVLR 115
           AGQERF+S+  ++YR A   +LVYD++   +F+ +  W  E   +A+        F +L 
Sbjct: 66  AGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILG 125
Query: 116 VLVGGTSGLKIVNEMAS 132
             +      KIV+E ++
Sbjct: 126 NKIDAEESKKIVSEKSA 142

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 69/114 (60%)
Query: 6   FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
           + FKVVL+G   VGKT LV R+ +  F      T+   F+ K + I  +R+ L IWDTAG
Sbjct: 19  YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 66  QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           QERF ++   YYR ++  ILVYDI+ + +F  + +W++E+ +    ++   +VG
Sbjct: 79  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVG 132

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 66/106 (62%)
Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
           LFKV+L+G+ GVGK+ L+ R+    F      TIGV+F+ K +E++   + +QIWDTAGQ
Sbjct: 9   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFK 112
           ERFRS+   +YR +   +L + +    +F  L++W +E   YA  K
Sbjct: 69  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVK 114

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 64/101 (63%)
Query: 5   KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTA 64
           K L KV+++G++GVGKT L+ ++    F     ATIG DF+ K V +++  + +QIWDTA
Sbjct: 6   KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTA 65
Query: 65  GQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
           G ERF+S+  ++YR A   +LV+D++   TF  L  W  E 
Sbjct: 66  GLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEF 106

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 66/106 (62%)
Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
           LFK++L+G+ GVGK+ L+ R+    F      TIGV+F+ K +E++   + +QIWDTAGQ
Sbjct: 11  LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFK 112
           ERFRS+   +YR +   +L + +    +F  L++W +E   YA  K
Sbjct: 71  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVK 116

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 73/117 (62%), Gaps = 10/117 (8%)
Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE-------- 54
           DY +L K++ +G++GVGKT  + R+T   F P    T+G+DF  K V  N +        
Sbjct: 21  DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 80
Query: 55  --RIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA 109
             ++ LQ+WDTAGQERFRS+T +++R A   +L++D++ Q +F  + +W+ +++  A
Sbjct: 81  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA 137

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 92.8 bits (229), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 66/106 (62%)
Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
           L KV+L+G+ GVGK+ L+ R+    F      TIGV+F+ + +E++   + LQIWDTAGQ
Sbjct: 7   LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFK 112
           ERF+S+   +YR A   +L + +  + +F+ L +W +E   YA  K
Sbjct: 67  ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVK 112

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 90.9 bits (224), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 103/193 (53%), Gaps = 25/193 (12%)
Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE-------- 54
           DY +L K++ +G++GVGKT  + R+T   F P    T+G+DF  K V  + +        
Sbjct: 7   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGK 66
Query: 55  --RIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFK 112
             ++ LQ+WDTAG ERFRS+T +++R A   +L++D++ Q +F  + +W+ +++  A  +
Sbjct: 67  AFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 126
Query: 113 VLR-VLVGGTSGL--------KIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163
               VL+G  + L        +   E+A   G+     P   T+ A+ + ++++    L 
Sbjct: 127 NPDIVLIGNKADLPDQREVNERQARELAEKYGI-----PYFETSAATGQ-NVEKSVETLL 180
Query: 164 CLLMVFVAVCIPK 176
            L+M  +  C+ K
Sbjct: 181 DLIMKRMEKCVEK 193

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 103/193 (53%), Gaps = 25/193 (12%)
Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE-------- 54
           DY +L K++ +G++GVGKT  + R+T   F P    T+G+DF  K V  + +        
Sbjct: 7   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGK 66
Query: 55  --RIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFK 112
             ++ LQ+WDTAG ERFRS+T +++R A   +L++D++ Q +F  + +W+ +++  A  +
Sbjct: 67  AFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 126
Query: 113 VLR-VLVGGTSGL--------KIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163
               VL+G  + L        +   E+A   G+     P   T+ A+ + ++++    L 
Sbjct: 127 NPDIVLIGNKADLPDQREVNERQARELAEKYGI-----PYFETSAATGQ-NVEKSVETLL 180
Query: 164 CLLMVFVAVCIPK 176
            L+M  +  C+ K
Sbjct: 181 DLIMKRMEKCVEK 193

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 89.0 bits (219), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 41/117 (35%), Positives = 70/117 (59%), Gaps = 10/117 (8%)
Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE-------- 54
           DY +L K++ +G++GVGKT  + R+T   F P    T+G+DF  K V  + +        
Sbjct: 7   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGK 66
Query: 55  --RIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA 109
             ++ LQ+WDTAG ERFRS+T +++R A   +L +D++ Q +F  + +W  +++  A
Sbjct: 67  AFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANA 123

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/117 (35%), Positives = 70/117 (59%), Gaps = 10/117 (8%)
Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE-------- 54
           DY +L K++ +G++GVGKT  + R+T   F P    T+G+DF  K V  + +        
Sbjct: 7   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGK 66
Query: 55  --RIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA 109
             ++ LQ+WDTAG ERFRS+T +++R A   +L +D++ Q +F  + +W  +++  A
Sbjct: 67  AFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANA 123

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 72/117 (61%), Gaps = 10/117 (8%)
Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN---------- 52
           DY +L K + +G++GVGKT ++ ++T G F      T+G+DF  K V             
Sbjct: 7   DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGR 66
Query: 53  NERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA 109
            +RI LQ+WDTAG ERFRS+T +++R A   +L++D++ + +F  + +W+ +++ +A
Sbjct: 67  GQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 123

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 56/98 (57%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VLVG+ G GKT  V+R   G F     AT+GV+        N   IK  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
           +F  +   YY  A   I+++D++ + T+  + +W R++
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 113

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 56/98 (57%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VLVG+ G GKT  V+R   G F     AT+GV+        N   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
           +F  +   YY  A   I+++D++ + T+  + +W R++
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 56/98 (57%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VLVG+ G GKT  V+R   G F     AT+GV+        N   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
           +F  +   YY  A   I+++D++ + T+  + +W R++
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 56/98 (57%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VLVG+ G GKT  V+R   G F     AT+GV+        N   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
           +F  +   YY  A   I+++D++ + T+  + +W R++
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 56/98 (57%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VLVG+ G GKT  V+R   G F     AT+GV+        N   IK  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
           +F  +   YY  A   I+++D++ + T+  + +W R++
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 101

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 55/98 (56%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VLVG+ G GKT  V+R   G F     AT+GV+        N   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
           +F  +   YY  A   I+ +D++ + T+  + +W R++
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDL 108

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 56/98 (57%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VLVG+ G GKT  V+R   G F     AT+GV+        N   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
           +F  +   YY  A   I+++D++ + T+  + +W R++
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 56/98 (57%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VLVG+ G GKT  V+R   G F     AT+GV+        N   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
           ++  +   YY  A   I+++D++ + T+  + +W R++
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 55/98 (56%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VLVG+ G GKT  V+R   G F      T+GV+        N   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
           +F  +   YY  A   I+++D++ + T+  + +W R++
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/98 (36%), Positives = 55/98 (56%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VLVG+ G GKT  V+R   G F      T+GV+        N   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
           +F  +   YY  A   I+++D++ + T+  + +W R++
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 55/98 (56%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VLVG+ G GKT  V+R   G F     AT+GV+        N   IK  +WDTAG E
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
           +F  +   YY  A   I+++D++ + T+  + +W R++
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 57/98 (58%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VLVG+ G GKT  V+R   G F     ATIGV+    +   N   IK  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
           +F  +   YY +A   I+++D++ + T+  + +W R++
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL 110

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 55/98 (56%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VLVG+ G GKT  V+R   G       AT+GV+        N   IK  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
           +F  +   YY  A   I+++D++ + T+  + +W R++
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 113

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/98 (37%), Positives = 57/98 (58%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VLVG+ G GKT  V+R   G F     ATIGV+    +   N   IK  +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
           +F  +   YY +A   I+++D++ + T+  + +W R++
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL 103

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/98 (37%), Positives = 57/98 (58%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VLVG+ G GKT  V+R   G F     ATIGV+    +   N   IK  +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
           +F  +   YY +A   I+++D++ + T+  + +W R++
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL 102

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 55/98 (56%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VLVG+ G GKT  V+R   G F     AT+GV+        N   IK  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
           +F  +   YY  A   I+++D++ + T+  + +W R++
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 110

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/98 (36%), Positives = 55/98 (56%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VLVG+ G GKT  V+R   G F     AT+GV+        N   IK  +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
           +F  +   YY  A   I+++D++ + T+  + +W R++
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 104

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           KVVLVG+ G GKT L+  F  G FP     T+   +M+  +++  + + L IWDTAGQ+ 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQDD 94
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
           +  +   +Y  A  L+L +D++   +FD + + W  E+  +   KV  ++VG  + L+
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGCKTDLR 151

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 72.8 bits (177), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Query: 1   MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIG-VDFMIKTVEINNERIKLQ 59
           ME  +  +K+ L+G+ GVGKT  + R   G F     AT+G V+  +  ++     IK  
Sbjct: 5   MERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFN 64
Query: 60  IWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIE 106
           +WDTAGQE+   +   YY  A   IL +D++ + T   L  W++E +
Sbjct: 65  VWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQ 111

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 4/116 (3%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEI-NNERIKLQIWDTAGQ 66
            K+V++G+   GKT L   F Q  F      TIG+DF ++ + +  N  + LQIWD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDW---LREIEEYASFKVLRVLVG 119
                +   Y   A  ++LVYDI+   +F+ L DW   ++++ E +  + L  LVG
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVG 122

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 64/109 (58%), Gaps = 9/109 (8%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +K+V++G+ GVGK+ L  +F QG+F      TI  D   K VE++ ++  L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDTAGTE 62
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRV 116
           +F ++   Y ++     LVY I+ Q TF+ L D LRE       ++LRV
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD-LRE-------QILRV 103

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +K+V++G+ GVGK+ L  +F QG+F      TI  D   K VE++ ++  L+I DTAG E
Sbjct: 6   YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDTAGTE 64
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLRE 104
           +F ++   Y ++     LVY I+ Q TF+ L D LRE
Sbjct: 65  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD-LRE 100

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 69.7 bits (169), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +K+V++G+ GVGK+ L  +F QG+F      TI  D   K VE++ ++  L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLRE 104
           +F ++   Y ++     LVY I+ Q TF+ L D LRE
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD-LRE 98

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 64/109 (58%), Gaps = 9/109 (8%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +K+V++G+ GVGK+ L  +F QG+F      TI  D   K VE++ ++  L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRV 116
           +F ++   Y ++     LVY I+ Q TF+ L D LRE       ++LRV
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD-LRE-------QILRV 103

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
             K V VG+  VGKTCL+  +T   FP     T+  +F    V +N   + L +WDTAGQ
Sbjct: 8   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQ 66
Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLT-DWLREIEEYASFKVLRVLVG 119
           E +  +    YR A   IL + +  + +++ ++  W+ E++ YA   V  VLVG
Sbjct: 67  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVG 119

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
Query: 1   MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
           +E+ K   K+V+VG+  VGKTCL+  F++G  P     T+  +F    ++  NE   L +
Sbjct: 17  IENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHL 75
Query: 61  WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
           WDTAGQE +  +    Y  +  ++L + ++ + +FD + T W  EI+ Y       VLVG
Sbjct: 76  WDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLVG 134

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
Query: 1   MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
           +E+ K   K+V+VG+  VGKTCL+  F++G  P     T+  +F    ++  NE   L +
Sbjct: 16  IENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHL 74
Query: 61  WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
           WDTAGQE +  +    Y  +  ++L + ++ + +FD + T W  EI+ Y       VLVG
Sbjct: 75  WDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLVG 133

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 37/146 (25%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDF----------------------- 44
           +K VL+G + VGK+ +V R T+  F      TIG  F                       
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 45  ---------MIKTVEINNER-----IKLQIWDTAGQERFRSITQSYYRSAHALILVYDIS 90
                    +I T + NN       IK  IWDTAGQER+ SI   YYR A   I+V+DIS
Sbjct: 68  INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 91  CQPTFDCLTDWLREIEEYASFKVLRV 116
              T D    W+ +++  +++ ++ V
Sbjct: 128 NSNTLDRAKTWVNQLKISSNYIIILV 153

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V+VG++  GKT L+  F +  FP     T+  ++   + EI+ +RI+L +WDT+G   
Sbjct: 25  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPY 83
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDC-LTDWLREIEEYASFKVLRVLVGGTSGLK 125
           + ++    Y  + A+++ +DIS   T D  L  W  EI+E+     + +LVG  S L+
Sbjct: 84  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKM-LLVGCKSDLR 140

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V+VG++  GKT L+  F +  FP     T+  ++   + EI+ +RI+L +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPY 67
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYASFKVLRVLVGGTSGLK 125
           + ++    Y  + A+++ +DIS   T D  L  W  EI+E+     + +LVG  S L+
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKM-LLVGCKSDLR 124

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V+VG++  GKT L+  F +  FP     T+  ++   + EI+ +RI+L +WDT+G   
Sbjct: 30  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPY 88
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYASFKVLRVLVGGTSGLK 125
           + ++    Y  + A+++ +DIS   T D  L  W  EI+E+     + +LVG  S L+
Sbjct: 89  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKM-LLVGCKSDLR 145

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 4/120 (3%)
Query: 1   MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
           M   +F+ K V VG+  VGKTC++  +T   FP     T+  +F    V ++   + L +
Sbjct: 1   MSTARFI-KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGL 58
Query: 61  WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
           WDTAGQE +  +    YR A   +L + +  + +++ +   WL E++ YA   +  VLVG
Sbjct: 59  WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAP-GIPIVLVG 117

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
             K V VG+  VGKTC++  +T   FP     T+  +F    V ++   + L +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQ 64
Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLT-DWLREIEEYASFKVLRVLVG 119
           E +  +    YR A   IL + +  + +++ +   W+ E+  YA   V  +LVG
Sbjct: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP-GVPIILVG 117

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 4/120 (3%)
Query: 1   MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
           M   KF+ K V VG+  VGKTC++  +T   FP     T+  D     V ++ + + L +
Sbjct: 4   MSVSKFI-KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGL 61
Query: 61  WDTAGQERFRSITQSYYRSAHALILVYDISCQPTF-DCLTDWLREIEEYASFKVLRVLVG 119
           WDTAGQE +  +    YR A   +L + +  + ++ + L  W+ E+  +A   V  VLVG
Sbjct: 62  WDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVG 120

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
           L KV++VG+ GVGK+ L  +F    F      T   D   K V ++ E +++ I DTAGQ
Sbjct: 18  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQ 76
Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI-----EEYASFKVLRVLVGGT 121
           E + +I  +Y+RS    + V+ I+   +F    D+  +I     +E   F    +LVG  
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF----LLVGNK 132
Query: 122 SGLK 125
           S L+
Sbjct: 133 SDLE 136

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
           L KV++VG+ GVGK+ L  +F    F      T   D   K V ++ E +++ I DTAGQ
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQ 64
Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI-----EEYASFKVLRVLVGGT 121
           E + +I  +Y+RS    + V+ I+   +F    D+  +I     +E   F    +LVG  
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF----LLVGNK 120
Query: 122 SGLK 125
           S L+
Sbjct: 121 SDLE 124

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
           L KV++VG+ GVGK+ L  +F    F      T   D   K V ++ E +++ I DTAGQ
Sbjct: 14  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQ 72
Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI-----EEYASFKVLRVLVGGT 121
           E + +I  +Y+RS    + V+ I+   +F    D+  +I     +E   F    +LVG  
Sbjct: 73  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF----LLVGNK 128
Query: 122 SGLK 125
           S L+
Sbjct: 129 SDLE 132

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
           L KV++VG+ GVGK+ L  +F    F      T   D   K V ++ E +++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQ 62
Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI-----EEYASFKVLRVLVGGT 121
           E + +I  +Y+RS    + V+ I+   +F    D+  +I     +E   F    +LVG  
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF----LLVGNK 118
Query: 122 SGLK 125
           S L+
Sbjct: 119 SDLE 122

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V+VG+   GKTCL+  F++  FP     T+  ++ +  +E++ ++++L +WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
           +  +    Y     +++ + I    + + + + W  E++ +    V  +LVG    L+
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 123

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V+VG+   GKTCL+  F++  FP     T+  ++ I  +E++ ++++L +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
           +  +    Y     +++ + I    + + + + W  E++ +    V  +LVG    L+
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 142

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V+VG+   GKTCL+  F++  FP     T+  ++ +  +E++ ++++L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
           +  +    Y     +++ + I    + + + + W  E++ +    V  +LVG    L+
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 124

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V+VG+   GKTCL+  F++  FP     T+  ++ +  +E++ ++++L +WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
           +  +    Y     +++ + I    + + + + W  E++ +    V  +LVG    L+
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 123

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V+VG+   GKTCL+  F++  FP     T+  ++ I  +E++ ++++L +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
           +  +    Y     +++ + I    + + + + W  E++ +    V  +LVG    L+
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXP-NVPIILVGNKKDLR 142

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
           L KV++VG+ GVGK+ L  +F    F      T   D   K V ++ E +++ I DTAG 
Sbjct: 3   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGL 61
Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
           E + +I  +Y+RS    +LV+ I+   +F    ++  +I
Sbjct: 62  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQI 100

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
           L KV++VG+ GVGK+ L  +F    F      T   D   K V ++ E +++ I DTAG 
Sbjct: 7   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGL 65
Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
           E + +I  +Y+RS    +LV+ I+   +F    ++  +I
Sbjct: 66  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQI 104

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V+VG+   GKTCL+  F++  FP     T+  ++ +  +E++ ++++L +WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 69
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
           +  +    Y     +++ + I    + + + + W  E++ +    V  +LVG    L+
Sbjct: 70  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 126

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V+VG+   GKTCL+  F++  FP     T+  ++ +  +E++ ++++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
           +  +    Y     +++ + I    + + + + W  E++ +    V  +LVG    L+
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 122

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V+VG+   GKTCL+  F++  FP     T+  ++ +  +E++ ++++L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
           +  +    Y     +++ + I    + + + + W  E++ +    V  +LVG    L+
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 124

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V+VG+   GKTCL+  F++  FP     T+  ++ +  +E++ ++++L +WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 68
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
           +  +    Y     +++ + I    + + + + W  E++ +    V  +LVG    L+
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 125

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 9/118 (7%)
Query: 9   KVVLVGNAGVGKTCLVRRF--TQGVFPPGQGATIGVDFMIKTVEINNERIK---LQIWDT 63
           K+ +VGN G GKT L+++   T+      Q AT+G+D     ++I ++R +   L +WD 
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 64  AGQERFRSITQSYYRSAHALIL-VYDIS-CQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           AG+E F S T  ++ +  AL L VYD+S  Q   D    WL  I+  AS   + +LVG
Sbjct: 64  AGREEFYS-THPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPV-ILVG 119

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 10/124 (8%)
Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
           L KV++VG+ GVGK+ L  +F    F      T   D   K V ++ E +++ I DTAG 
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGL 64
Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI-----EEYASFKVLRVLVGGT 121
           E + +I  +Y+RS    + V+ I+   +F    D+  +I     +E   F    +LVG  
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF----LLVGNK 120
Query: 122 SGLK 125
           S L+
Sbjct: 121 SDLE 124

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 2/128 (1%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           KVV++G   VGKT L  +F +G F  G   T+   +  K V +  +   L + DTAGQ+ 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDTAGQDE 84
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEE-YASFKVLRVLVGGTSGLKIV 127
           +  +  S+    H  +LVY ++   +F  +    +++ E +   +V  VLVG  + L   
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 128 NEMASAAG 135
            E+ +  G
Sbjct: 145 REVQAVEG 152

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V+VG+   GKTCL+  F++  FP     T+  ++ +  +E++ ++++L +WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
           +       Y     +++ + I    + + + + W  E++ +    V  +LVG    L+
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 122

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V+VG+   GKTCL+  F++  FP     T+  ++ +  +E++ ++++L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
           +  +    Y     +++ + I    + + + + W  E++ +    V  +LVG    L+
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 124

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 5/119 (4%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+VLVG+   GKT +++   +  +P     T+  ++    +E   +R++L +WDT+G   
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 71
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYA-SFKVLRVLVGGTSGLK 125
           + ++    Y  + A++L +DIS   T D  L  W  EI +Y  S +VL  L+G  + L+
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVL--LIGCKTDLR 128

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 70/154 (45%), Gaps = 34/154 (22%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V+VG+   GKTCL+  F++  FP     T+  ++ +  +E++ ++++L +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 85
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLKIV 127
           +  +    Y     +++ + +    + + + + W+ E++ +                   
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC------------------ 127
Query: 128 NEMASAAGLLCTVDPALATALASDKTDLDEDEHV 161
                         P +   L ++K DL  DEHV
Sbjct: 128 --------------PNVPIILVANKKDLRSDEHV 147

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 5/119 (4%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+VLVG+   GKT +++   +  +P     T+  ++    +E   +R++L +WDT+G   
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 87
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYA-SFKVLRVLVGGTSGLK 125
           + ++    Y  + A++L +DIS   T D  L  W  EI +Y  S +VL  L+G  + L+
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVL--LIGCKTDLR 144

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 5/119 (4%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+VLVG+   GKT +++   +  +P     T+  ++    +E   +R++L +WDT+G   
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPY 70
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYA-SFKVLRVLVGGTSGLK 125
           + ++    Y  + A++L +DIS   T D  L  W  EI +Y  S +VL  L+G  + L+
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVL--LIGCKTDLR 127

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V+VG+   GKTCL+   ++  FP     T+  ++ +  +E++ ++++L +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
           +  +    Y     +++ + I    + + + + W  E++ +    V  +LVG    L+
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 120

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V+VG+   GKTCL+   ++  FP     T+  ++ +  +E++ ++++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
           +  +    Y     +++ + I    + + + + W  E++ +    V  +LVG    L+
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 122

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V+VG+   GKTCL+   ++G FP     T+  ++ +  VE++  R++L +WDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENY-VADVEVDGRRVELALWDTAGQED 70
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
           +  +    Y  ++ +++ + I    + + + + W+ E+  +    V  +LVG
Sbjct: 71  YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQ-GVPIILVG 121

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V+VG+   GKTCL+   ++  FP     T+  ++ +  +E++ ++++L +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
           +  +    Y     +++ + I    + + + + W  E++ +    V  +LVG    L+
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 120

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V+VG+   GKTCL+   ++  FP     T+  ++ I  +E++ ++++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 65
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
           +  +    Y     +++ + I    + + + + W  E++ +    V  +LVG    L+
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 122

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 9/118 (7%)
Query: 9   KVVLVGNAGVGKTCLVRRF--TQGVFPPGQGATIGVDFMIKTVEINNERIK---LQIWDT 63
           K+ +VGN G GKT L+++   T+      Q AT+G+D     ++I ++R +   L +WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 64  AGQERFRSITQSYYRSAHALIL-VYDIS-CQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           AG+E F S T  ++ +  AL L VYD+S  Q   D    WL  I+  AS   + +LVG
Sbjct: 62  AGREEFYS-THPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPV-ILVG 117

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +K+V+VG  GVGK+ L  +  Q  F      TI  D   K V I+ E   L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 63
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
            + ++   Y R+    + V+ I+   +F+ +  +  +I+    S  V  VLVG  S L
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL 121

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V+VG+   GKTCL+   ++  FP     T+  ++ +  +E++ ++++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
           +  +    Y     +++ + I    + + + + W  E++ +    V  +LVG    L+
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 122

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V+VG+   GKTCL+   ++  FP     T+  ++ +  +E++ ++++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
           +  +    Y     +++ + I    + + + + W  E++ +    V  +LVG    L+
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 122

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K VLVG+  VGKT LV  +T   +P     T   D     V ++   ++LQ+ DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPT-AFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
           F  +    Y +    +L + +    +F  +++ W+ EI  +   K   +LVG  S L+
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLR 137

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +K+V+VG  GVGK+ L  +  Q  F      TI  D   K V I+ E   L I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
            + ++   Y R+    + V+ I+   +F+ +  +  +I+    S  V  VLVG    L
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   FP     T+  ++ + TV I  E   L ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 64
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ + + W+ EI  +   K   +LVG
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 116

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   FP     T+  ++ + TV I  E   L ++DTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 72
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ + + W+ EI  +   K   +LVG
Sbjct: 73  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 124

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +K+V+VG  GVGK+ L  +  Q  F      TI  D   K V I+ E   L I DTAGQE
Sbjct: 4   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
            + ++   Y R+    + V+ I+   +F+ +  +  +I+    S  V  VLVG    L
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   FP     T+  ++ + TV I  E   L ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 65
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ + + W+ EI  +   K   +LVG
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 117

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 6   FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
            + K V+VG+  VGKTCL+  +    FP     T+  D    +V +  ++  L ++DTAG
Sbjct: 17  LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAG 75
Query: 66  QERFRSITQSYYRSAHALILVYDISCQPTFDCLT-DWLREIEEYASFKVLRVLVG 119
           QE +  +    Y      ++ + +    +F  +  +W+ E++EYA   V  +L+G
Sbjct: 76  QEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIG 129

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   FP     T+  ++ + TV I  E   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ + + W+ EI  +   K   +LVG
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   FP     T+  ++ + TV I  E   L ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 65
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ + + W+ EI  +   K   +LVG
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 117

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K V+VG+  VGKTCL+  +T   FP     T+  ++ + TV I  E   L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
           +  +    Y      ++ + +    +F+ + + W+ EI  +   K   +LVG
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   F PG+      D     V ++ + + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ +   W  E+  +     + +LVG
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 114

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K V+VG+  VGKTCL+  +T   FP     T+  ++ + TV I  E   L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
           +  +    Y      ++ + +    +F+ + + W+ EI  +   K   +LVG
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K V+VG+  VGKTCL+  +T   FP     T+  ++ + TV I  E   L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
           +  +    Y      ++ + +    +F+ + + W+ EI  +   K   +LVG
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   FP     T+  ++ + TV I  E   L ++DTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 63
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ + + W+ EI  +   K   +LVG
Sbjct: 64  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 115

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +K+V+VG  GVGK+ L  +  Q  F      TI  D   K V I+ E   L I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
            + ++   Y R+    + V+ I+   +F+ +  +  +I+    S  V  VLVG    L
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   FP     T+  ++ + TV I  E   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ + + W+ EI  +   K   +LVG
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   FP     T+  ++ + TV I  E   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ + + W+ EI  +   K   +LVG
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   F PG+      D     V ++++ + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQE 62
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +++ +   W  E+  +     + +LVG
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPI-ILVG 114

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   FP     T+  ++ + TV I  E   L ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ + + W+ EI  +   K   +LVG
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 121

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   F PG+      D     V ++ + + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ +   W  E+  +     + +LVG
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 114

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   F PG+      D     V ++ + + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ +   W  E+  +     + +LVG
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 114

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +K+V+VG  GVGK+ L  +  Q  F      TI  D   K V I+ E   L I DTAGQE
Sbjct: 4   YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
            + ++   Y R+    + V+ I+   +F+ +  +  +I+    S  V  VLVG    L
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K V+VG+  VGKTCL+  +T   FP     T+  ++ + TV I  E   L ++DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
           +  +    Y      ++ + +    +F+ + + W+ EI  +   K   +LVG
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 116

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   F PG+      D     V ++ + + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ +   W  E+  +     + +LVG
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 114

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   F PG+      D     V ++ + + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ +   W  E+  +     + +LVG
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 114

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   F PG+      D     V ++ + + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ +   W  E+  +     + +LVG
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 114

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   F PG+      D     V ++ + + L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 63
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ +   W  E+  +     + +LVG
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI-LLVG 115

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   FP     T+  ++ + TV I  E   L ++DTAGQE
Sbjct: 4   IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ + + W+ EI  +   K   +LVG
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   F PG+      D     V ++ + + L +WDTAGQE
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 81
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ +   W  E+  +     + +LVG
Sbjct: 82  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 133

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   F PG+      D     V ++ + + L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ +   W  E+  +     + +LVG
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 141

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   F PG+      D     V ++ + + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ +   W  E+  +     + +LVG
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI-LLVG 114

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   F PG+      D     V ++ + + L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 63
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ +   W  E+  +     + +LVG
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI-LLVG 115

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +K+V+VG  GVGK+ L  +  Q  F      TI  D   K V I+ E   L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 63
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
            + ++   Y R+    + V+ I+   +F+ +  +  +I+    S  V  VLVG    L
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 121

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 9  KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
          K+ ++G   VGK+ L  +F +G F      TI   F  K + +N +   LQ+ DTAGQ+ 
Sbjct: 6  KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 64
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCL 98
          +    Q+Y    +  ILVY ++   +F+ +
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVI 94

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   F PG+      D     V ++ + + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ +   W  E+  +     + +LVG
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 114

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 9  KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
          K+ ++G   VGK+ L  +F +G F      TI   F  K + +N +   LQ+ DTAGQ+ 
Sbjct: 8  KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 66
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCL 98
          +    Q+Y    +  ILVY ++   +F+ +
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVI 96

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   F PG+      D     V ++ + + L +WDTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 66
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ +   W  E+  +     + +LVG
Sbjct: 67  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 118

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   F PG+      D     V ++ + + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ +   W  E+  +     + +LVG
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 114

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   F PG+      D     V ++ + + L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ +   W  E+  +     + +LVG
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 116

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   F PG+      D     V ++++ + L +WDTAGQE
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQE 69
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +++ +   W  E+  +     + +LVG
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPI-ILVG 121

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   F PG+      D     V ++++ + L +WDTAGQE
Sbjct: 10  IKCVVVGDVAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQE 68
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +++ +   W  E+  +     + +LVG
Sbjct: 69  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPI-ILVG 120

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 20  KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
           K+ L  +F Q +F P    TI  D  +K  EI+N+   L + DTAGQE F ++ + Y R+
Sbjct: 26  KSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 84
Query: 80  AHALILVYDISCQPTFD 96
               ++VY ++ + +F+
Sbjct: 85  GDGFLIVYSVTDKASFE 101

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 9  KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
          K+ ++G   VGK+ L  +F +G F      TI   F  K + +N +   LQ+ DTAGQ+ 
Sbjct: 3  KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 61
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCL 98
          +    Q+Y    +  ILVY ++   +F+ +
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFEVI 91

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V+VG+   GKTCL+   ++  FP     T+  ++ +  +E++ ++++L +WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLED 68
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
           +  +    Y     +++ + I    + + + + W  E++ +    V  +LVG    L+
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 125

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K V+VG+  VGKTCL+  +T   FP     T+  ++ + TV I  E   L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQED 63
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
           +  +    Y      ++ + +    +F+ + + W+ EI  +   K   +LVG    L+
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLR 120

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQ--GVFPPGQGATIGVDFMIKTVEINNERIKLQIW--DTA 64
           KV +VG A VGK+ L+  FT     F      T GV+ ++  V I +  + ++++  DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 65  GQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWL 102
           G + ++     Y+   +  ILV+D+S   +F+    W 
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWF 119

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   FP     T+  ++ + TV I  E   L + DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQE 62
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ + + W+ EI  +   K   +LVG
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 9  KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
          K+ ++G   VGK+ L  +F +G F      TI   F  K + +N +   LQ+ DTAGQ+ 
Sbjct: 8  KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 66
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCL 98
          +    Q+Y    +  ILVY ++   +F+ +
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVI 96

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K V+VG+  VGKTCL+  +T   FP      +  ++ + TV I  E   L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
           +  +    Y      ++ + +    +F+ + + W+ EI  +   K   +LVG
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K V+VG+  VGKTCL+  +T   FP     T+  ++ + TV I  E   L ++DTAGQE 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 67
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
           +  +    Y      ++ + +    +F+ + + W+ EI  +   K   +LVG    L+
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLR 124

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K V+VG+  VGKTCL+  +T   FP     T+  ++ + TV I  E   L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
           +  +    Y      ++ + +    +F+ + + W+ EI  +   K   +LVG    L+
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLR 120

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
           E  K L K V+VG+  VGKTCL+  +T   F PG+      D     V ++ + + L +W
Sbjct: 150 EAAKELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLW 208
Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
           DTAG E +  +    Y      ++ + +    +F  +   W  E+  +     + +LVG
Sbjct: 209 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI-ILVG 266

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
           E  K L K V+VG+  VGKTCL+  +T   F PG+      D     V ++ + + L +W
Sbjct: 150 EAAKELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLW 208
Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
           DTAG E +  +    Y      ++ + +    +F  +   W  E+  +     + +LVG
Sbjct: 209 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI-ILVG 266

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
           E  K L K V+VG+  VGKTCL+  +T   F PG+      D     V ++ + + L +W
Sbjct: 150 EAAKELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLW 208
Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
           DTAG E +  +    Y      ++ + +    +F  +   W  E+  +     + +LVG
Sbjct: 209 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI-ILVG 266

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGK CL+  +T   FP     T+  ++ + TV I  E   L ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ + + W+ EI  +   K   +LVG
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 121

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 20  KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
           K+ L  +F Q +F P    TI  D  +K  EI+N+   L + DTAGQE F ++ + Y R+
Sbjct: 31  KSALTIQFFQKIFVPEYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 80  AHALILVYDISCQPTFD 96
               ++VY ++ + +F+
Sbjct: 90  GDGFLIVYSVTDKASFE 106

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGK CL+  +T   FP G+      D     V ++ + + L +WDTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 69
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ +   W  E+  +     + +LVG
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 121

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T    P     T+  ++ + TV I  E   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ + + W+ EI  +   K   +LVG
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T    P G+      D     V ++ + + L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ +   W  E+  +     + +LVG
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 141

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           ++V + G  GVGK+ LV RF +G F      T+  D   + +  +     LQI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE-DTYRQVISCDKSICTLQITDTTGSH 62
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEE 107
           +F ++ +      HA ILVY I+ + + + L     +I E
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICE 102

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   F PG+      D     V ++ + + L +WDTAG E
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE 65
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ +   W  E+  +     + +LVG
Sbjct: 66  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 117

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   F PG+      D     V ++ + + L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE 62
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ +   W  E+  +     + +LVG
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 114

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   F PG+      D     V ++ + + L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE 62
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ +   W  E+  +     + +LVG
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 114

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   FP     T+  ++ + TV I  E   L ++DTAG E
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLE 66
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ + + W+ EI  +   K   +LVG
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 118

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   F PG+      D     V ++ + + L +WDTAG E
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE 89
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ +   W  E+  +     + +LVG
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 141

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 13/84 (15%)
Query: 9  KVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDTA 64
          ++++VG  G GKT ++ +   G      P     TIG  F ++TV+  N  I   +WD  
Sbjct: 19 RILMVGLDGAGKTTVLYKLKLGEVITTIP-----TIG--FNVETVQYKN--ISFTVWDVG 69
Query: 65 GQERFRSITQSYYRSAHALILVYD 88
          GQ+R RS+ + YYR+   +I V D
Sbjct: 70 GQDRIRSLWRHYYRNTEGVIFVVD 93

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 13/85 (15%)
Query: 8  FKVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
           ++++VG  G GKT ++ +   G      P     TIG  F ++TV+  N  I   +WD 
Sbjct: 1  MRILMVGLDGAGKTTVLYKLKLGEVITTIP-----TIG--FNVETVQYKN--ISFTVWDV 51
Query: 64 AGQERFRSITQSYYRSAHALILVYD 88
           GQ+R RS+ + YYR+   +I V D
Sbjct: 52 GGQDRIRSLWRHYYRNTEGVIFVVD 76

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 13/84 (15%)
Query: 9  KVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDTA 64
          ++++VG  G GKT ++ +   G      P     TIG  F ++TV+  N  I   +WD  
Sbjct: 19 RILMVGLDGAGKTTVLYKLKLGEVITTIP-----TIG--FNVETVQYKN--ISFTVWDVG 69
Query: 65 GQERFRSITQSYYRSAHALILVYD 88
          GQ+R RS+ + YYR+   +I V D
Sbjct: 70 GQDRIRSLWRHYYRNTEGVIFVID 93

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   F  G+      D     V ++ + + L +WDTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNAFS-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 72
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
            +  +    Y      ++ + +    +F+ +   W  E+  +     + +LVG
Sbjct: 73  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 124

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 8  FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           K V+VG+  VGKTCL+  +T   F PG+      D     V ++ + + L +WDTAGQE
Sbjct: 6  IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 68 RF 69
           +
Sbjct: 65 DY 66

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 10/144 (6%)
Query: 20  KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
           K+ L  +F  G F      TI  DF  K +E+++    L+I DTAG E+F S+   Y ++
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 80  AHALILVYDISCQPTFD---CLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGL 136
               ILVY +  Q +F     + D +  ++ Y   KV  +LVG    L+   E++S+ G 
Sbjct: 75  GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYE--KVPVILVGNKVDLESEREVSSSEGR 132
Query: 137 LCTVD---PALATALASDKTDLDE 157
               +   P + T+ A  KT +DE
Sbjct: 133 ALAEEWGCPFMETS-AKSKTMVDE 155

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K V+VG+  VGKTCL+  +T   FP     T+  ++ + TV I  E   L ++DTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 63
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
           +  +    Y      ++ + +    +F+ + + W+ EI  +   K   +LVG    L+
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLR 120

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 4   YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
           +K   ++ LVG    GKT  V     G F      T+G  F ++ +   N  IKL  WD 
Sbjct: 28  WKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDI 83
Query: 64  AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGT 121
            GQ RFRS+ + Y R   A++ + D + Q   +   + L  + +    + + VLV G 
Sbjct: 84  GGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGN 141

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 20  KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
           K+ L  +F Q +F      TI  D  +K  EI+N+   L + DTAGQE F ++ + Y R+
Sbjct: 31  KSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 80  AHALILVYDISCQPTFD 96
               ++VY ++ + +F+
Sbjct: 90  GDGFLIVYSVTDKASFE 106

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            ++ LVG    GKT  V     G F      T+G  F ++ +   N  IKL  WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQP 78
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGT 121
           RFRS+ + Y R   A++ + D + Q   +   + L  + +    + + VLV G 
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGN 132

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            ++ LVG    GKT  V     G F      T+G  F ++ V   N  IK  IWD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--IWDIGGQP 78
Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGT 121
           RFRS+ + Y R  +A++ + D + +   +   + L  + +    + + VLV G 
Sbjct: 79  RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGN 132

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 8/144 (5%)
Query: 20  KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
           K+ L  +F Q  F      TI  D   K   ++    +L I DTAGQE F ++ + Y R+
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 80  AHALILVYDISCQPTFD----CLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAG 135
            H  +LV+ I+ + +F+      T  LR +++   F V  VLVG  + L+   ++  +  
Sbjct: 81  GHGFLLVFAINDRQSFNEVGKLFTQILR-VKDRDDFPV--VLVGNKADLESQRQVPRSEA 137
Query: 136 LLCTVDPALATALASDKTDLDEDE 159
                   +A   AS K  L+ DE
Sbjct: 138 SAFGASHHVAYFEASAKLRLNVDE 161

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 13/144 (9%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+ + G AGVGK+ LV RF    F      T+   +  +   I++E + ++I DTAGQE 
Sbjct: 30  KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQED 88
Query: 69  FRSITQSYYRSAHALILVYDISCQPTFD---CLTDWLREIEEYASFKVLRVLVGGTSGLK 125
                + + R     +LVYDI+ + +F+    L + L EI++  +  V  +LVG  + L 
Sbjct: 89  TIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKN--VTLILVGNKADLD 145
Query: 126 IVNEMASAAGLLCTVDPALATALA 149
              ++++  G        LAT LA
Sbjct: 146 HSRQVSTEEG------EKLATELA 163

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 13/85 (15%)
Query: 8  FKVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
           ++++VG    GKT ++ +   G      P     TIG  F ++TVE  N  I   +WD 
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEIVTTIP-----TIG--FNVETVEYKN--ISFTVWDV 68
Query: 64 AGQERFRSITQSYYRSAHALILVYD 88
           GQ++ R + + YY++  A+I V D
Sbjct: 69 GGQDKIRPLWRHYYQNTQAIIFVVD 93

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 8  FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +++++G    GKT ++++F  G        T+G  F IKT+E  +   KL IWD  GQ+
Sbjct: 17 LRLLMLGLDNAGKTTILKKFN-GEDIDTISPTLG--FNIKTLE--HRGFKLNIWDVGGQK 71
Query: 68 RFRSITQSYYRSAHALILVYD 88
            RS  ++Y+ S   LI V D
Sbjct: 72 SLRSYWRNYFESTDGLIWVVD 92

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 8  FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +++++G    GKT ++++F  G        T+G  F IKT+E  +   KL IWD  GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFN-GEDVDTISPTLG--FNIKTLE--HRGFKLNIWDVGGQK 73
Query: 68 RFRSITQSYYRSAHALILVYD 88
            RS  ++Y+ S   LI V D
Sbjct: 74 SLRSYWRNYFESTDGLIWVVD 94

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 8  FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +++++G    GKT ++++F  G        T+G  F IKT+E  +   KL IWD  GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFN-GEDVDTISPTLG--FNIKTLE--HRGFKLNIWDVGGQK 73
Query: 68 RFRSITQSYYRSAHALILVYD 88
            RS  ++Y+ S   LI V D
Sbjct: 74 SLRSYWRNYFESTDGLIWVVD 94

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 20  KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
           K+ L  +F Q +F      TI  D   K  EI+N+   L + DTAGQE F ++ + Y R+
Sbjct: 31  KSALTIQFFQKIFVDEYDPTIE-DSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 80  AHALILVYDISCQPTFD 96
               ++VY ++ + +F+
Sbjct: 90  GDGFLIVYSVTDKASFE 106

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 20  KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
           K+ L  +F Q  F      TI  D   K   I++   +L I DTAGQE F ++ + Y R+
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 80  AHALILVYDISCQPTFDCLTDWLREI 105
               +LV+ ++ + +F+ +  + R+I
Sbjct: 77  GEGFLLVFSVTDRGSFEEIYKFQRQI 102

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDTA 64
           ++++VG    GKT ++ +   G      P     TIG  F ++TVE  N  I   +WD  
Sbjct: 19  RILMVGLDAAGKTTILYKVKLGEVVTTIP-----TIG--FNVETVEFRN--ISFTVWDVG 69
Query: 65  GQERFRSITQSYYRSAHALILVYDISCQPTFD 96
           GQ++ R + + YY +   LI V D + +   D
Sbjct: 70  GQDKIRPLWRHYYSNTDGLIFVVDSNDRERID 101

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 13/85 (15%)
Query: 8  FKVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
           ++++VG    GKT ++ +   G      P     TIG  F ++TVE  N  I   +WD 
Sbjct: 1  MRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIG--FNVETVEYKN--ISFTVWDV 51
Query: 64 AGQERFRSITQSYYRSAHALILVYD 88
           GQ++ R + + Y+++   LI V D
Sbjct: 52 GGQDKIRPLWRHYFQNTQGLIFVVD 76

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 13/84 (15%)
Query: 9  KVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDTA 64
          ++++VG    GKT ++ +   G      P     TIG  F ++TVE  N  I   +WD  
Sbjct: 22 RILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIG--FNVETVEYKN--ISFTVWDVG 72
Query: 65 GQERFRSITQSYYRSAHALILVYD 88
          GQ++ R + + Y+++   LI V D
Sbjct: 73 GQDKIRPLWRHYFQNTQGLIFVVD 96

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 13/84 (15%)
Query: 9  KVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDTA 64
          ++++VG    GKT ++ +   G      P     TIG  F ++TVE  N  I   +WD  
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIG--FNVETVEYKN--ICFTVWDVG 69
Query: 65 GQERFRSITQSYYRSAHALILVYD 88
          GQ+R R + + Y+++   LI V D
Sbjct: 70 GQDRIRPLWKHYFQNTQGLIFVVD 93

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 14/88 (15%)
Query: 8  FKVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
           +++++G  G GKT ++ R   G      P     TIG  F ++TV   N  +K Q+WD 
Sbjct: 3  MRILILGLDGAGKTTILYRLQVGEVVTTIP-----TIG--FNVETVTYKN--LKFQVWDL 53
Query: 64 AGQERFRSITQSYYRSAHALILVYDISC 91
           GQ   R   + YY +  A+I V D SC
Sbjct: 54 GGQTSIRPYWRCYYSNTDAVIYVVD-SC 80

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 13/84 (15%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDTA 64
           ++++VG    GKT ++ +   G      P     TIG  F ++TVE  N  I   +WD  
Sbjct: 167 RILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIG--FNVETVEYKN--ISFTVWDVG 217
Query: 65  GQERFRSITQSYYRSAHALILVYD 88
           GQ++ R + + Y+++   LI V D
Sbjct: 218 GQDKIRPLWRHYFQNTQGLIFVVD 241

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 18/94 (19%)
Query: 4  YKFLF-----KVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNE 54
          +K LF     ++++VG    GKT ++ +   G      P     TIG  F ++TVE  N 
Sbjct: 9  FKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIG--FNVETVEYKN- 60
Query: 55 RIKLQIWDTAGQERFRSITQSYYRSAHALILVYD 88
           I   +WD  GQ++ R + + Y+++   LI V D
Sbjct: 61 -ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 18/94 (19%)
Query: 4  YKFLF-----KVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNE 54
          +K LF     ++++VG    GKT ++ +   G      P     TIG  F ++TVE  N 
Sbjct: 8  FKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIG--FNVETVEYKN- 59
Query: 55 RIKLQIWDTAGQERFRSITQSYYRSAHALILVYD 88
           I   +WD  GQ++ R + + Y+++   LI V D
Sbjct: 60 -ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 92

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATI--GVDFMIKTVEINNERIKLQIWDTAG 65
            +++++G    GKT ++ +   G     Q  T    V F ++TV   N  +K  +WD  G
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLG-----QSVTTIPTVGFNVETVTYKN--VKFNVWDVGG 375
Query: 66  QERFRSITQSYYRSAHALILVYDIS 90
           Q++ R + + YY     LI V D +
Sbjct: 376 QDKIRPLWRHYYTGTQGLIFVVDCA 400

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 7  LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
          + +++++G    GKT ++++F  G        T+G  F IKT+E  +   KL IWD  G 
Sbjct: 1  MLRLLMLGLDNAGKTTILKKFN-GEDVDTISPTLG--FNIKTLE--HRGFKLNIWDVGGL 55
Query: 67 ERFRSITQSYYRSAHALILVYD 88
          +  RS  ++Y+ S   LI V D
Sbjct: 56 KSLRSYWRNYFESTDGLIWVVD 77

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 4/137 (2%)
Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
           L++VVL+G+ GVGKT L   F  G         +G D   +T+ ++ E   L + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFA-GKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 67  ERF-RSITQ-SYYRSAHALILVYDISCQPTFDCLTDWLREIEE-YASFKVLRVLVGGTSG 123
           E+  +S +Q S  +   A ++VY I+ + +F+  ++   ++   + +  V  +LVG  + 
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122
Query: 124 LKIVNEMASAAGLLCTV 140
           L    E++   G  C V
Sbjct: 123 LARCREVSVEEGRACAV 139

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 13/84 (15%)
Query: 9  KVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDTA 64
          ++++VG  G GKT ++ +   G      P     TIG  F ++ V+  N  I   +WD  
Sbjct: 19 RILMVGLDGAGKTTVLYKLKLGEVITTIP-----TIG--FNVECVQYCN--ISFTVWDVG 69
Query: 65 GQERFRSITQSYYRSAHALILVYD 88
          GQ+R RS+ + YY +   +I V D
Sbjct: 70 GQDRIRSLWRHYYCNTEGVIFVVD 93

>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco) Length = 535

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 23/117 (19%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFM------IKTVEINNERIK---L 58
            KV L+G+   GKT L+++     F P +  T G++ +      IK +E N++ +K    
Sbjct: 42  IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLE-NDDELKECLF 100
Query: 59  QIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTD-----WLREIEEYAS 110
             WD  GQE   +  Q +   +   +L+         D  TD     WLR IE+Y  
Sbjct: 101 HFWDFGGQEIMHASHQFFMTRSSVYMLL--------LDSRTDSNKHYWLRHIEKYGG 149

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 8  FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATI--GVDFMIKTVEINNERIKLQIWDTAG 65
           +++++G    GKT ++ +   G     Q  T    V F ++TV   N  +K  +WD  G
Sbjct: 1  MRILMLGLDAAGKTTILYKLKLG-----QSVTTIPTVGFNVETVTYKN--VKFNVWDVGG 53
Query: 66 QERFRSITQSYYRSAHALILVYDISCQPTFD 96
          Q++ R + + YY     LI V D + +   D
Sbjct: 54 QDKIRPLWRHYYTGTQGLIFVVDCADRDRID 84

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 8  FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATI--GVDFMIKTVEINNERIKLQIWDTAG 65
           +++++G    GKT ++ +   G     Q  T    V F ++TV   N  +K  +WD  G
Sbjct: 1  MRILMLGLDAAGKTTILYKLKLG-----QSVTTIPTVGFNVETVTYKN--VKFNVWDVGG 53
Query: 66 QERFRSITQSYYRSAHALILVYDISCQPTFD 96
          Q++ R + + YY     LI V D + +   D
Sbjct: 54 QDKIRPLWRHYYTGTQGLIFVVDCADRDRID 84

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 8  FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATI--GVDFMIKTVEINNERIKLQIWDTAG 65
           +++++G    GKT ++ +   G     Q  T    V F ++TV   N  +K  +WD  G
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLG-----QSVTTIPTVGFNVETVTYKN--VKFNVWDVGG 66
Query: 66 QERFRSITQSYYRSAHALILVYDISCQPTFD 96
          Q++ R + + YY     LI V D + +   D
Sbjct: 67 QDKIRPLWRHYYTGTQGLIFVVDCADRDRID 97

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 8  FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +++++G  G GKT ++ R   G     +  TIG  F ++T+   N  +KL +WD  GQ 
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEVVTTK-PTIG--FNVETLSYKN--LKLNVWDLGGQT 73
Query: 68 RFRSITQSYYRSAHALILVYD 88
            R   + YY    A+I V D
Sbjct: 74 SIRPYWRCYYADTAAVIFVVD 94

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 8  FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATI--GVDFMIKTVEINNERIKLQIWDTAG 65
           +++++G    GKT ++ +   G     Q  T    V F ++TV   N  +K  +WD  G
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLG-----QSVTTIPTVGFNVETVTYKN--VKFNVWDVGG 65
Query: 66 QERFRSITQSYYRSAHALILVYDISCQPTFD 96
          Q++ R + + YY     LI V D + +   D
Sbjct: 66 QDKIRPLWRHYYTGTQGLIFVVDCADRDRID 96

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 13/85 (15%)
Query: 8   FKVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
            ++++VG    GKT ++ +   G      P     TIG  F ++TVE  N  I   +WD 
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIG--FNVETVEYKN--ICFTVWDV 80
Query: 64  AGQERFRSITQSYYRSAHALILVYD 88
            GQ++ R + + Y+++   LI V D
Sbjct: 81  GGQDKIRPLWRHYFQNTQGLIFVVD 105

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQ---GVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
           +++L+G    GKT L+++          P QG      F IK+V+  ++  KL +WD  G
Sbjct: 19  RILLLGLDNAGKTTLLKQLASEDISHITPTQG------FNIKSVQ--SQGFKLNVWDIGG 70
Query: 66  QERFRSITQSYYRSAHALILVYDISCQPTFD 96
           Q + R   +SY+ +   LI V D + +  F+
Sbjct: 71  QRKIRPYWRSYFENTDILIYVIDSADRKRFE 101

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 9  KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
          KV++VG    GKT ++ +F+          TIG +  ++ + INN R  +  WD  GQE 
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSN--VEEIVINNTRFLM--WDIGGQES 72
Query: 69 FRSITQSYYRSAHALILVYD 88
           RS   +YY +   +I+V D
Sbjct: 73 LRSSWNTYYTNTEFVIVVVD 92

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 9   KVVLVGNAGVGKTCLVRRFTQ---GVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
           +++L+G    GKT L+++          P QG      F IK+V+  ++  KL +WD  G
Sbjct: 18  RILLLGLDNAGKTTLLKQLASEDISHITPTQG------FNIKSVQ--SQGFKLNVWDIGG 69
Query: 66  QERFRSITQSYYRSAHALILVYDISCQPTFD 96
           Q + R   +SY+ +   LI V D + +  F+
Sbjct: 70  QRKIRPYWRSYFENTDILIYVIDSADRKRFE 100

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 9  KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
          KV++VG    GKT ++ +F+          TIG +  ++ + INN R  +  WD  GQE 
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSN--VEEIVINNTRFLM--WDIGGQES 72
Query: 69 FRSITQSYYRSAHALILVYD 88
           RS   +YY +   +I+V D
Sbjct: 73 LRSSWNTYYTNTEFVIVVVD 92

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	730
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-67
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	3e-16
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	3e-67
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-15
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	2e-65
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	3e-18
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	3e-65
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-14
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	3e-65
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	3e-14
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	4e-65
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-13
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	7e-65
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	2e-15
3p8c_B	1128	NCK-associated protein 1; actin polymerization, pr	8e-65
3p8c_B	1128	NCK-associated protein 1; actin polymerization, pr	9e-39
3p8c_B	1128	NCK-associated protein 1; actin polymerization, pr	2e-27
3p8c_B	1128	NCK-associated protein 1; actin polymerization, pr	3e-19
3p8c_B	1128	NCK-associated protein 1; actin polymerization, pr	2e-09
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	8e-65
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	4e-16
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-64
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-15
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-64
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-13
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-64
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	3e-16
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-64
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	3e-14
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	2e-64
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	8e-16
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	2e-64
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	2e-15
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	3e-64
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-15
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	5e-64
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	2e-15
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	6e-64
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	6e-16
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	6e-64
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	3e-15
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	6e-64
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-15
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	8e-64
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-15
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-63
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	3e-16
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	2e-63
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	2e-15
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	2e-63
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	2e-15
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	2e-63
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	6e-17
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	3e-63
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	8e-15
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	3e-63
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	3e-13
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	5e-63
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	2e-15
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	8e-63
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	5e-17
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	3e-62
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	7e-17
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	2e-61
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	5e-15
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	4e-61
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	6e-15
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	8e-61
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	4e-15
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-60
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	3e-13
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	1e-60
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	1e-14
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-60
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	5e-15
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	5e-60
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	5e-15
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	1e-59
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	7e-16
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-59
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-15
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	2e-59
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-13
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	3e-59
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	7e-16
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-58
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	9e-13
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	1e-56
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	5e-14
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	2e-52
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	2e-10
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	1e-49
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	7e-07
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	1e-47
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	3e-17
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	9e-46
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	2e-12
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	1e-45
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	1e-12
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	1e-43
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	5e-12
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	2e-42
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	2e-12
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	2e-42
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	2e-11
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	9e-42
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	6e-10
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	2e-41
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	2e-11
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	2e-41
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	8e-12
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	3e-41
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	3e-12
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	4e-41
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	1e-10
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	7e-41
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	5e-11
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	1e-40
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	5e-11
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	1e-40
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	6e-11
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	1e-39
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	3e-12
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	2e-39
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	8e-13
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	2e-39
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	7e-09
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	3e-39
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	6e-12
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	5e-39
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	8e-12
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	7e-36
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	2e-09
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-35
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-09
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-35
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-09
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	3e-35
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	5e-06
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	4e-35
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	5e-10
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	6e-35
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	5e-12
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	8e-35
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	7e-08
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	5e-30
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	2e-29
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	3e-04
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	1e-28
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	6e-28
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	2e-27
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	5e-27
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	2e-26
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	2e-26
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	2e-26
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	1e-25
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	2e-25
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	2e-25
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	2e-23
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	2e-15
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	2e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	7e-14
3llu_A	196	RAS-related GTP-binding protein C; structural geno	1e-13
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	4e-13
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	5e-13
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	6e-13
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	1e-12
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	1e-12
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	1e-12
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	2e-12
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	3e-12
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	3e-12
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	4e-12
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	7e-12
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	2e-11
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	9e-11
2fh5_B	214	SR-beta, signal recognition particle receptor beta	4e-10
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-09
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	1e-08
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	2e-08
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	8e-07
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	4e-08
1nrj_B	218	SR-beta, signal recognition particle receptor beta	2e-07
2ged_A	193	SR-beta, signal recognition particle receptor beta	8e-07

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  220 bits (563), Expect = 1e-67
 Identities = 99/119 (83%), Positives = 111/119 (93%)

Query: 1   MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
           MEDY FLFK+VL+GNAGVGKTCLVRRFTQG+FPPGQGATIGVDFMIKTVEIN E++KLQI
Sbjct: 20  MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQI 79

Query: 61  WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           WDTAGQERFRSITQSYYRSA+ALIL YDI+C+ +F CL +WLREIE+YAS KV+ VLVG
Sbjct: 80  WDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVG 138

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score = 76.9 bits (190), Expect = 3e-16
 Identities = 28/56 (50%), Positives = 39/56 (69%), Gaps = 1/56 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
           NKID  + RE+  +  E+F++  DMYYLETSAK SDNVEKLF+ +A  L+ +  + 
Sbjct: 139 NKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQN 194

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  219 bits (560), Expect = 3e-67
 Identities = 68/118 (57%), Positives = 92/118 (77%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
           E Y FLFK+VLVG+A VGKTC+V+RF  G F   QG+TIGVDF +KT+EI  +R+KLQIW
Sbjct: 24  EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIW 83

Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           DTAGQERFR+ITQSYYRSA+  IL YDI+ + +F  +  W+ ++ +YA   ++++L+G
Sbjct: 84  DTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIG 141

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 75.0 bits (185), Expect = 1e-15
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHD-MYYLETSAKASDNVEKLFMQIAAELMEKLAEKL 257
           NK D  + RE+     +  A+ +D +  +ETSAK S NVE+ F+++A EL+ +    L
Sbjct: 142 NKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGPL 199

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  214 bits (546), Expect = 2e-65
 Identities = 58/119 (48%), Positives = 82/119 (68%), Gaps = 1/119 (0%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
           ED     K++++G +GVGK+ L+ RFT   F P   ATIGVDF +KT+ ++  + KL IW
Sbjct: 10  EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW 69

Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASF-KVLRVLVG 119
           DTAGQERFR++T SYYR A  +ILVYD++ + TF  L +WL E+E Y +   ++ +LVG
Sbjct: 70  DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVG 128

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score = 82.7 bits (205), Expect = 3e-18
 Identities = 20/65 (30%), Positives = 36/65 (55%)

Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKLTIMH 261
           NKID+E+RE+    G  FA++H M ++E SAK  D V+  F ++  ++++      +   
Sbjct: 129 NKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQ 188

Query: 262 DRGVG 266
           + G  
Sbjct: 189 NSGPS 193

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  212 bits (543), Expect = 3e-65
 Identities = 50/118 (42%), Positives = 83/118 (70%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
            +Y ++FK +++G+ GVGK+CL+ +FT+  F      TIGV+F  + +E++ ++IKLQIW
Sbjct: 10  YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIW 69

Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           DTAGQERFR++T+SYYR A   ++VYDI+ + T++ L+ WL +     +   + +L+G
Sbjct: 70  DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 127

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score = 71.8 bits (177), Expect = 1e-14
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
           NK D E  R++  E  + FA+ + + +LE SAK  +NVE  F++ A ++ +
Sbjct: 128 NKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  213 bits (544), Expect = 3e-65
 Identities = 53/118 (44%), Positives = 86/118 (72%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
           ++Y +LFKVVL+G++GVGK+ L+ RFT+  F     +TIGV+F  ++++++ + IK QIW
Sbjct: 24  DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 83

Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           DTAG ER+R+IT +YYR A   +LVYDI+   T++ +  WL+E+ ++A   ++ +LVG
Sbjct: 84  DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 141

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score = 70.7 bits (174), Expect = 3e-14
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
           NK D    R +PT+    FA+++ + ++ETSA  S NVE  F  I  E+
Sbjct: 142 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  213 bits (545), Expect = 4e-65
 Identities = 51/118 (43%), Positives = 78/118 (66%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
              +  +K+VL G+A VGK+  + R  +  F     AT+GVDF +KT+ ++ ER  LQ+W
Sbjct: 23  FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLW 82

Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           DTAGQERFRSI +SY+R A  ++L+YD++C+ +F  + +W+  IE+ A   V  +LVG
Sbjct: 83  DTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVG 140

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 69.2 bits (170), Expect = 1e-13
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 7/58 (12%)

Query: 202 NKIDRED-------REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
           NK D  D       + +P   GE  A  +   + ETSAK   N+ +  + +A E+ ++
Sbjct: 141 NKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKR 198

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  212 bits (542), Expect = 7e-65
 Identities = 57/118 (48%), Positives = 81/118 (68%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
           E Y FLFK +++GNAG GK+CL+ +F +  F      TIGV+F  K + +  + +KLQIW
Sbjct: 5   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64

Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           DTAGQERFRS+T+SYYR A   +LVYDI+ + T++ LT+WL +    AS  ++ +L G
Sbjct: 65  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 122

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score = 74.5 bits (184), Expect = 2e-15
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
           NK D +  RE+       FA+ +++ +LETSA   +NVE+ F+Q A +++ K+   
Sbjct: 123 NKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESG 178

>3p8c_B NCK-associated protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens} Length = 1128

 Score =  232 bits (593), Expect = 8e-65
 Identities = 100/164 (60%), Positives = 123/164 (75%)

Query: 385 AQIASRRKKDKNNKKILNEIIKPGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQV 444
           +Q  +++ K +  KK   E  KPG ES RK R  +T +DKLH AL+ELCF+INY  N+ V
Sbjct: 638 SQAVNKKSKKQTGKKGEPEREKPGVESMRKNRLVVTNLDKLHTALSELCFSINYVPNMVV 697

Query: 445 WDFTFAPREYLHQHLESRFSRALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYV 504
           W+ TF PREYL  HLE RF++++VGM M+N  T EIAKPSELL SVRAYM VLQ++ENYV
Sbjct: 698 WEHTFTPREYLTSHLEIRFTKSIVGMTMYNQATQEIAKPSELLTSVRAYMTVLQSIENYV 757

Query: 505 HIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLRRVS 548
            ID+TRVFNN LLQQTQ +DSHGE T+ +LY  WY E LLR+VS
Sbjct: 758 QIDITRVFNNVLLQQTQHLDSHGEPTITSLYTNWYLETLLRQVS 801

>3p8c_B NCK-associated protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens} Length = 1128

 Score =  154 bits (389), Expect = 9e-39
 Identities = 64/115 (55%), Positives = 86/115 (74%), Gaps = 5/115 (4%)

Query: 557 LLNFLRVY-----TVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLR 611
           LL  +R Y     ++ENYV ID+TRVFNN LLQQTQ +DSHGE T+ +LY  WY E LLR
Sbjct: 739 LLTSVRAYMTVLQSIENYVQIDITRVFNNVLLQQTQHLDSHGEPTITSLYTNWYLETLLR 798

Query: 612 RVSAGNICFSLNQRAFVSLTAEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNE 666
           +VS G+I +    +AFV+L  E  + FNAEE+SD++E+R+L++L+GPYGMK L+E
Sbjct: 799 QVSNGHIAYFPAMKAFVNLPTENELTFNAEEYSDISEMRSLSELLGPYGMKFLSE 853

>3p8c_B NCK-associated protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens} Length = 1128

 Score =  117 bits (295), Expect = 2e-27
 Identities = 57/97 (58%), Positives = 80/97 (82%), Gaps = 4/97 (4%)

Query: 252 KLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNIDIK- 310
           KLAEKLTI++DRGVGMLTR+YNIKKACGD K+KPS+L DK+LES +K IV+KFP ++ + 
Sbjct: 12  KLAEKLTILNDRGVGMLTRLYNIKKACGDPKAKPSYLIDKNLESAVKFIVRKFPAVETRN 71

Query: 311 ---SVSGISQIRSDIVKSLSLYYYTFVDLLHFKDCVY 344
               ++ + + +S+I+K+L+LYY+TFVD++ FKD V 
Sbjct: 72  NNQQLAQLQKEKSEILKNLALYYFTFVDVMEFKDHVC 108

>3p8c_B NCK-associated protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens} Length = 1128

 Score = 92.1 bits (228), Expect = 3e-19
 Identities = 42/77 (54%), Positives = 56/77 (72%), Gaps = 2/77 (2%)

Query: 127  VNEMASAAGLLCTVDPALATALASDKTD--LDEDEHVLACLLMVFVAVCIPKLARNEACF 184
            V E++SAAGL C +DPAL  AL+S K++    E+E+ +ACLLMVFVAV +P LA N    
Sbjct: 958  VYELSSAAGLPCEIDPALVVALSSQKSENISPEEEYKIACLLMVFVAVSLPTLASNVMSQ 1017

Query: 185  YLASLEGHSNNIHCMAR 201
            Y  ++EGH NNIHC+A+
Sbjct: 1018 YSPAIEGHCNNIHCLAK 1034

>3p8c_B NCK-associated protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens} Length = 1128

 Score = 60.1 bits (145), Expect = 2e-09
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 672 FNAAHEMVHNQSDVNFPRLGQMIMDYEVPMKKLSEEFIPH 711
           +N AHEM H  SD  +PRLGQMI+DYE P+KK+ EEF+PH
Sbjct: 160 YNYAHEMTHGASDREYPRLGQMIVDYENPLKKMMEEFVPH 199

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  212 bits (541), Expect = 8e-65
 Identities = 61/120 (50%), Positives = 88/120 (73%), Gaps = 1/120 (0%)

Query: 1   MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQ-GATIGVDFMIKTVEINNERIKLQ 59
           ++ Y   FKV+LVG++GVGKTCL+ RF  G F  G   +T+G+DF  K ++++  ++KLQ
Sbjct: 4   VDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQ 63

Query: 60  IWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           +WDTAGQERFRS+T +YYR AHAL+L+YD++ + +FD +  WL EI EYA   V  +L+G
Sbjct: 64  MWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLG 123

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 75.7 bits (187), Expect = 4e-16
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
           NK+D    R +  E GE  AK + + ++ETSAK   NV+  F  IA EL  +  + 
Sbjct: 124 NKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKA 179

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  212 bits (542), Expect = 1e-64
 Identities = 64/118 (54%), Positives = 93/118 (78%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
            +Y +LFK++L+GN+GVGK+CL+ RF+   +     +TIGVDF IKTVE++ + +KLQIW
Sbjct: 3   SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIW 62

Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           DTAGQERFR+IT SYYR +H +I+VYD++ Q +F+ +  WL+EI+ YA+  VL++LVG
Sbjct: 63  DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG 120

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score = 75.0 bits (185), Expect = 1e-15
 Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 1/56 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
           NK D +D R +  +V ++FA  + M +LETSA  S NVE  F+ +A ++ E ++++
Sbjct: 121 NKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQ 176

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  212 bits (541), Expect = 1e-64
 Identities = 62/118 (52%), Positives = 83/118 (70%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
               F  +V+++G+ GVGKT L+ RFT   F     +T+GVDF IKTVE+  ++I+LQIW
Sbjct: 21  RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIW 80

Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           DTAGQERF SIT +YYRSA  +ILVYDI+ + TFD L  W++ I++YAS     +LVG
Sbjct: 81  DTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVG 138

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 68.8 bits (169), Expect = 1e-13
 Identities = 20/54 (37%), Positives = 37/54 (68%), Gaps = 2/54 (3%)

Query: 202 NKIDRED-REIPTEVGEDFAKR-HDMYYLETSAKASDNVEKLFMQIAAELMEKL 253
           NK+D E  REI  + GE FA++   M + E SAK + NV+++F+++  ++++K+
Sbjct: 139 NKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  212 bits (541), Expect = 1e-64
 Identities = 55/118 (46%), Positives = 80/118 (67%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
           EDY F+FKVVL+G +GVGKT L+ RFT+  F      TIGV+F  +TV +    +K QIW
Sbjct: 20  EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIW 79

Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           DTAG ER+R+IT +YYR A   +LV+D++   T+  +  WL+E+ ++A   ++ +LVG
Sbjct: 80  DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVG 137

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score = 76.5 bits (189), Expect = 3e-16
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
           NK D    RE+PTE    FA+ + + +LETSA  S NVE  F  +  E+  K++++
Sbjct: 138 NKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  213 bits (543), Expect = 1e-64
 Identities = 58/118 (49%), Positives = 80/118 (67%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
            DY  LFK+VL+G++GVGK+ L+ RFT+  F     +TIGV+F  +T+EI  +RIK QIW
Sbjct: 8   YDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIW 67

Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           DTAGQER+R+IT +YYR A   ++VYDIS   +++    WL E+ E A   V   L+G
Sbjct: 68  DTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIG 125

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score = 71.7 bits (176), Expect = 3e-14
 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKLTIM 260
           NK D    R +PTE  + FA+ + + + ETSA  S+NV+K F ++   + +K+++    +
Sbjct: 126 NKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDL 185

Query: 261 HDRGVG 266
            D    
Sbjct: 186 GDSSAN 191

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  211 bits (539), Expect = 2e-64
 Identities = 61/118 (51%), Positives = 94/118 (79%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
           + Y +LFK++L+G++GVGKTC++ RF++  F     +TIG+DF I+T+E++ +RIKLQIW
Sbjct: 3   KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62

Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           DTAGQERFR+IT +YYR A  ++LVYDI+ + +FD + +W+R IEE+AS  V ++++G
Sbjct: 63  DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG 120

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score = 75.3 bits (186), Expect = 8e-16
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKLT 258
           NK D  D R++  E GE  A  + + ++ETSAKA+ NVE  F  +A ++  K+ +   
Sbjct: 121 NKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNWK 178

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  211 bits (540), Expect = 2e-64
 Identities = 53/118 (44%), Positives = 77/118 (65%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
               FLFK +++G+AG GK+CL+ +F +  F      TIGV+F  + V +  + +KLQIW
Sbjct: 20  IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIW 79

Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           DTAGQERFRS+T+SYYR A   +LVYDI+ + T++ L  WL +    AS  ++ +L G
Sbjct: 80  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCG 137

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score = 74.6 bits (184), Expect = 2e-15
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
           NK D +  RE+       FA+ +++ +LETSA   +NVE+ F++ A  ++ K+   
Sbjct: 138 NKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSG 193

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  211 bits (539), Expect = 3e-64
 Identities = 63/118 (53%), Positives = 91/118 (77%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
            +Y +LFK++L+G++GVGK+CL+ RF    +     +TIGVDF I+T+E++ + IKLQIW
Sbjct: 11  PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 70

Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           DTAGQERFR+IT SYYR AH +I+VYD++ Q +F+ +  WL+EI+ YAS  V ++LVG
Sbjct: 71  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 128

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score = 74.6 bits (184), Expect = 1e-15
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKLTIM 260
           NK D    + +     ++FA    + +LETSAK + NVE+ FM +AAE+ +++    T  
Sbjct: 129 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 188

Query: 261 HDRGVG 266
                 
Sbjct: 189 GAEKSN 194

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  210 bits (537), Expect = 5e-64
 Identities = 63/118 (53%), Positives = 91/118 (77%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
            +Y +LFK++L+G++GVGK+CL+ RF    +     +TIGVDF I+T+E++ + IKLQIW
Sbjct: 28  PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 87

Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           DTAGQERFR+IT SYYR AH +I+VYD++ Q +F+ +  WL+EI+ YAS  V ++LVG
Sbjct: 88  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 145

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score = 74.6 bits (184), Expect = 2e-15
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLA 254
           NK D    + +     ++FA    + +LETSAK + NVE+ FM +AAE+ +++ 
Sbjct: 146 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 199

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  210 bits (537), Expect = 6e-64
 Identities = 51/118 (43%), Positives = 81/118 (68%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
             + ++FK++++GN+ VGKT  + R+    F P   +T+G+DF +KT+  N++RIKLQIW
Sbjct: 3   HMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIW 62

Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           DTAG ER+R+IT +YYR A   IL+YDI+ + +F+ + DW  +I+ Y+      +LVG
Sbjct: 63  DTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVG 120

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score = 76.2 bits (188), Expect = 6e-16
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKLTIM 260
           NK D ED R + +E G   A      + E SAK + NV++ F ++   + EK++E L   
Sbjct: 121 NKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTA 180

Query: 261 HDRGVG 266
                G
Sbjct: 181 DPAVTG 186

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  209 bits (534), Expect = 6e-64
 Identities = 45/117 (38%), Positives = 70/117 (59%)

Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
              + FKVVL+G   VGKT LV R+ +  F      T+G  F+ K + I  +R+ L IWD
Sbjct: 2   SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWD 61

Query: 63  TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           TAGQERF ++   YYR ++  ILVYDI+ + +F  + +W++E+ +    ++   +VG
Sbjct: 62  TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVG 118

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score = 73.3 bits (181), Expect = 3e-15
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
           NKID E  R +  +  E +A+     +  TSAK +  +E+LF+ +   ++E
Sbjct: 119 NKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  210 bits (536), Expect = 6e-64
 Identities = 57/118 (48%), Positives = 83/118 (70%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
               +LFK +++G+ GVGK+CL+ +FT   F P    TIGV+F  + V I+ ++IKLQIW
Sbjct: 16  PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIW 75

Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           DTAGQE FRSIT+SYYR A   +LVYDI+ + TF+ LT WL +  +++S  ++ +L+G
Sbjct: 76  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIG 133

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score = 75.3 bits (186), Expect = 1e-15
 Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 3/75 (4%)

Query: 186 LASLEGHSN-NIHCM-ARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF 242
           L     HS+ N+  M   NK D E  R++  E GE FA+ H + ++ETSAK + NVE+ F
Sbjct: 116 LEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175

Query: 243 MQIAAELMEKLAEKL 257
           +  A E+  K+ + L
Sbjct: 176 INTAKEIYRKIQQGL 190

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  209 bits (535), Expect = 8e-64
 Identities = 53/118 (44%), Positives = 80/118 (67%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
               ++FK++L+GN+ VGKT  + R+    F P   +T+G+DF +KTV  +++RIKLQIW
Sbjct: 17  RGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIW 76

Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           DTAGQER+R+IT +YYR A   +L+YDI+ Q +F  + DW  +I+ Y+      +LVG
Sbjct: 77  DTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVG 134

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score = 74.6 bits (184), Expect = 1e-15
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAE 255
           NK D ED R +P E G   A      + E SAK + NV+++F ++   + EK+ E
Sbjct: 135 NKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNE 189

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  208 bits (532), Expect = 1e-63
 Identities = 41/116 (35%), Positives = 74/116 (63%), Gaps = 1/116 (0%)

Query: 4   YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
            +   K+V+VGN  VGK+ +++R+ +G+F      TIGVDF+ + +++N+E ++L +WDT
Sbjct: 2   SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDT 61

Query: 64  AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           AGQE F +IT++YYR A A +LV+  + + +F+ ++ W  ++       +   LV 
Sbjct: 62  AGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQ 116

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score = 76.0 bits (188), Expect = 3e-16
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 186 LASLEGHSNNIHCM-ARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM 243
              +     +I     +NKID  D   I  E  E  AKR  + +  TS K   NV ++F 
Sbjct: 100 REKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFK 159

Query: 244 QIAAELMEK 252
            +A + ++K
Sbjct: 160 YLAEKHLQK 168

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  209 bits (533), Expect = 2e-63
 Identities = 51/118 (43%), Positives = 82/118 (69%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
            ++ ++FK++++GN+ VGKT  + R+    F P   +T+G+DF +KTV  + +R+KLQIW
Sbjct: 18  GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIW 77

Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           DTAGQER+R+IT +YYR A   IL+YDI+ + +F+ + DW  +I+ Y+      +LVG
Sbjct: 78  DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVG 135

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score = 74.2 bits (183), Expect = 2e-15
 Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAE 255
           NK D E+ R +PTE G+  A++    + E SAK + +V + F ++   + +K+++
Sbjct: 136 NKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSD 190

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  208 bits (532), Expect = 2e-63
 Identities = 54/116 (46%), Positives = 84/116 (72%)

Query: 4   YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
           Y +LFKVVL+G++GVGK+ L+ RFT+  F     +TIGV+F  ++++++ + IK QIWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61

Query: 64  AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           AGQER+R IT +YYR A   +LVYDI+   T++ +  WL+E+ ++A   ++ +LVG
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 117

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score = 74.2 bits (183), Expect = 2e-15
 Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
           NK D    R +PT+    FA+++++ ++ETSA  S NVE+ F  I  E+   +++K
Sbjct: 118 NKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK 173

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  209 bits (534), Expect = 2e-63
 Identities = 57/118 (48%), Positives = 86/118 (72%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
           + Y  + K++L+G++GVGK+CL+ RF +  F P    TIG+DF IKTV+IN +++KLQ+W
Sbjct: 15  KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLW 74

Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           DTAGQERFR+IT +YYR A  +ILVYD++ + TF  +  W + + E+A+ +   +LVG
Sbjct: 75  DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVG 132

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score = 79.3 bits (196), Expect = 6e-17
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
           NK D E R +  + GE  AK   + ++E+SAK  DNV ++F  +A  + EK+   
Sbjct: 133 NKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSN 187

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  207 bits (530), Expect = 3e-63
 Identities = 46/123 (37%), Positives = 71/123 (57%), Gaps = 4/123 (3%)

Query: 1   MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
           M     LFKV+L+G+ GVGK+ L+ R+    F      TIGV+F+ K +E++   + +QI
Sbjct: 1   MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI 60

Query: 61  WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFK----VLRV 116
           WDTAGQERFRS+   +YR +   +L + +    +F  L++W +E   YA  K       V
Sbjct: 61  WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV 120

Query: 117 LVG 119
           ++G
Sbjct: 121 ILG 123

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score = 72.2 bits (178), Expect = 8e-15
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 202 NKIDREDREIPTEVGEDFAKRH-DMYYLETSAKASDNVEKLFMQIAAELMEK 252
           NKID  +R++ TE  + + + + D  Y ETSAK + NV   F +    ++  
Sbjct: 124 NKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  208 bits (531), Expect = 3e-63
 Identities = 56/120 (46%), Positives = 81/120 (67%), Gaps = 2/120 (1%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
                +FK++++G++ VGKTCL  RF  G FP    ATIGVDF  + V+I+ ERIK+Q+W
Sbjct: 15  GSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLW 74

Query: 62  DTAGQERFR-SITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYAS-FKVLRVLVG 119
           DTAGQERFR S+ Q YYR+ HA++ VYD++   +F  L  W+ E +++     + R+LVG
Sbjct: 75  DTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVG 134

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score = 68.0 bits (167), Expect = 3e-13
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKA---SDNVEKLFMQIAAELME 251
           NK D     ++PT++ + FA  H M   ETSAK    +D+VE +FM +A +L  
Sbjct: 135 NKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  207 bits (529), Expect = 5e-63
 Identities = 44/118 (37%), Positives = 72/118 (61%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
            +     K+VL+G+ G GK+ LV RF +  F   Q +TIG  F  +T+ +N+  +K +IW
Sbjct: 7   GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIW 66

Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           DTAGQER+ S+   YYR A A I+V+D++ Q +F+    W++E++   +  ++  L G
Sbjct: 67  DTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAG 124

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score = 74.1 bits (183), Expect = 2e-15
 Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
           NK D  D R++  E  + +A+ + ++++ETSAK + NV+++F +IA  L      +
Sbjct: 125 NKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTE 180

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  206 bits (527), Expect = 8e-63
 Identities = 61/118 (51%), Positives = 82/118 (69%), Gaps = 1/118 (0%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
            DY  LFK++++G++GVGK+ L+ RF    F      TIGVDF I+TVEIN E++KLQIW
Sbjct: 4   RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIW 63

Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           DTAGQERFR+IT +YYR  H +I+VYD++   +F  +  WL EI +     V R+LVG
Sbjct: 64  DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVG 120

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score = 78.4 bits (194), Expect = 5e-17
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 186 LASLEGHSNNIHCM-ARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM 243
           L  +  + +++  +   NK D  + + + TE    FA +  +   ETSAK + NVE++F 
Sbjct: 104 LHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFN 163

Query: 244 QIAAELMEKLAEKL 257
            I   ++    + L
Sbjct: 164 CITELVLRAKKDNL 177

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  204 bits (522), Expect = 3e-62
 Identities = 58/114 (50%), Positives = 84/114 (73%)

Query: 6   FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
            + K++L+G++GVGK+CL+ RF +  F P    TIG+DF IKTV+IN +++KLQIWDTAG
Sbjct: 2   SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 61

Query: 66  QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           QERFR+IT +YYR A  +ILVYDI+ + TF  +  W + + E+A+ +   +LVG
Sbjct: 62  QERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVG 115

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 78.0 bits (193), Expect = 7e-17
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAE 255
           NK D E R +  + GE  AK   + ++E+SAK  DNV ++F  +A  + EK+  
Sbjct: 116 NKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  202 bits (517), Expect = 2e-61
 Identities = 49/112 (43%), Positives = 70/112 (62%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            KV L+G+ GVGK+ ++ RF +  F P    TIG  FM KTV+  NE  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           RFR++   YYR + A I+VYDI+ + TF  L +W+RE+ ++    ++  + G
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAG 118

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score = 72.5 bits (179), Expect = 5e-15
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
           NK D  D RE+     +D+A      ++ETSAK + N+ +LF++I+  +  
Sbjct: 119 NKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 169

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  202 bits (515), Expect = 4e-61
 Identities = 46/119 (38%), Positives = 70/119 (58%)

Query: 1   MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
             +    FK+V +G   VGKT L+ RF    F     ATIG+DF+ KT+ + +  ++LQ+
Sbjct: 8   FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 67

Query: 61  WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           WDTAGQERFRS+  SY R +   ++VYDI+   +F   + W+ ++       V+ +LVG
Sbjct: 68  WDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVG 126

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score = 72.6 bits (179), Expect = 6e-15
 Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
           NK D  D R++ TE GE  AK  ++ ++ETSAKA  NV++LF ++AA L
Sbjct: 127 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  202 bits (516), Expect = 8e-61
 Identities = 46/119 (38%), Positives = 69/119 (57%)

Query: 1   MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
             +    FK+V +G   VGKT L+ RF    F     ATIG+DF+ KT+ + +  ++LQ+
Sbjct: 10  FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 69

Query: 61  WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           WDTAG ERFRS+  SY R +   ++VYDI+   +F   T W+ ++       V+ +LVG
Sbjct: 70  WDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVG 128

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score = 73.9 bits (182), Expect = 4e-15
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
           NK D  D R++  E GE  AK  ++ ++ETSAKA  NV++LF ++AA L    + +
Sbjct: 129 NKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQ 184

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  202 bits (515), Expect = 1e-60
 Identities = 47/122 (38%), Positives = 72/122 (59%), Gaps = 4/122 (3%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
              K L KV+++G++GVGKT L+ ++    F     ATIG DF+ K V +++  + +QIW
Sbjct: 3   SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIW 62

Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFK----VLRVL 117
           DTAGQERF+S+  ++YR A   +LV+D++   TF  L  W  E    AS +       V+
Sbjct: 63  DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV 122

Query: 118 VG 119
           +G
Sbjct: 123 LG 124

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score = 68.1 bits (167), Expect = 3e-13
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 187 ASLEGHSNNIHCMARNKIDREDREIPT-EVGEDFAKRHDMYYLETSAKASDNVEKLFMQI 245
           AS     N    +  NKID E+R++ T         ++++ Y ETSAK + NVE+ F  I
Sbjct: 110 ASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

Query: 246 AAELMEKLAEK 256
           A   +++  E 
Sbjct: 170 ARNALKQETEV 180

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  202 bits (515), Expect = 1e-60
 Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 1/120 (0%)

Query: 1   MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGV-DFMIKTVEINNERIKLQ 59
           ME  +  +K+ L+G+ GVGKT  + R   G F     AT+G  +  +  ++     IK  
Sbjct: 5   MERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFN 64

Query: 60  IWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           +WDTAGQE+   +   YY  A   IL +D++ + T   L  W++E +     +   V+  
Sbjct: 65  VWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCA 124

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score = 72.7 bits (179), Expect = 1e-14
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKLT 258
           NKID ++ ++I  ++  +  K  +  Y E SAK + N    F+ +A     +      
Sbjct: 125 NKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFV 182

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  201 bits (513), Expect = 1e-60
 Identities = 50/118 (42%), Positives = 68/118 (57%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
                  KV L+G+ GVGK+ +V RF Q  F      TIG  FM KTV   NE  K  IW
Sbjct: 18  GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIW 77

Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           DTAGQERF S+   YYR + A ++VYDI+ Q +F  L  W++E++E+    ++  + G
Sbjct: 78  DTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAG 135

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score = 73.0 bits (180), Expect = 5e-15
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
           NK D  D RE+P +  +++A+      +ETSAK + N+E+LF  I+ ++      +
Sbjct: 136 NKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHE 191

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  198 bits (506), Expect = 5e-60
 Identities = 49/112 (43%), Positives = 75/112 (66%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VL+G + VGK+ LV RF +G F   Q +TIG  F+ +TV +++  +K +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           R+ S+   YYR A A I+VYDI+ + +F    +W++E++  AS  ++  L G
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG 118

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score = 72.6 bits (179), Expect = 5e-15
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
           NK D  + R +  +  + +A  + + ++ETSAK S NV ++FM IA +L +
Sbjct: 119 NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  198 bits (505), Expect = 1e-59
 Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 4/121 (3%)

Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN-NERIKLQIW 61
            +    K+V++G+   GKT L   F Q  F      TIG+DF ++ + +  N  + LQIW
Sbjct: 2   SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61

Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY---ASFKVLRVLV 118
           D  GQ     +   Y   A  ++LVYDI+   +F+ L DW   +++    +  + L  LV
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121

Query: 119 G 119
           G
Sbjct: 122 G 122

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score = 75.3 bits (186), Expect = 7e-16
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
           NKID E  R I  E    F + +       SAK  D+V   F ++AAE++     K
Sbjct: 123 NKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNK 178

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  199 bits (508), Expect = 1e-59
 Identities = 46/129 (35%), Positives = 78/129 (60%), Gaps = 11/129 (8%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE------- 54
            DY +L K++ +G++GVGKT  + R+T   F P    T+G+DF  K V  N +       
Sbjct: 20  GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSG 79

Query: 55  ---RIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASF 111
              ++ LQ+WDTAGQERFRS+T +++R A   +L++D++ Q +F  + +W+ +++  A  
Sbjct: 80  KAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYC 139

Query: 112 K-VLRVLVG 119
           +    VL+G
Sbjct: 140 ENPDIVLIG 148

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score = 75.4 bits (186), Expect = 1e-15
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKL 257
           NK D  D RE+      + A ++ + Y ETSA    NVEK    +   +M+++ + +
Sbjct: 149 NKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQCV 205

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  198 bits (506), Expect = 2e-59
 Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
            + +  FK+VLVG+ G GKT  V+R   G F     AT+GV+        N   IK  +W
Sbjct: 10  GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVW 69

Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           DTAGQE+F  +   YY  A   I+++D++ + T+  + +W R++       +  VL G
Sbjct: 70  DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCG 126

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 69.7 bits (171), Expect = 1e-13
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 189 LEGHSNNIHCM-ARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA 247
           L     NI  +   NK+D +DR+        F ++ ++ Y + SAK++ N EK F+ +A 
Sbjct: 113 LVRVCENIPIVLCGNKVDIKDRK-VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 171

Query: 248 ELMEKLAEKLTIM 260
           +L+     +   M
Sbjct: 172 KLIGDPNLEFVAM 184

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  197 bits (503), Expect = 3e-59
 Identities = 45/129 (34%), Positives = 76/129 (58%), Gaps = 11/129 (8%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN--------- 52
            DY +L K + +G++GVGKT ++ ++T G F      T+G+DF  K V            
Sbjct: 6   GDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVG 65

Query: 53  -NERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA-S 110
             +RI LQ+WDTAG ERFRS+T +++R A   +L++D++ + +F  + +W+ +++ +A S
Sbjct: 66  RGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS 125

Query: 111 FKVLRVLVG 119
                VL G
Sbjct: 126 ENPDIVLCG 134

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score = 75.7 bits (187), Expect = 7e-16
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKL 257
           NK D ED R +  E   + A+++ + Y ETSA    N+      +   +M+++   +
Sbjct: 135 NKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMERSV 191

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  195 bits (498), Expect = 1e-58
 Identities = 43/123 (34%), Positives = 73/123 (59%), Gaps = 5/123 (4%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNER-IKLQI 60
              K + KV+++G++GVGKT L+ R+    +     ATIG DF+ K V ++ ++   +Q+
Sbjct: 3   SRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQV 62

Query: 61  WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFK----VLRV 116
           WDTAGQERF+S+  ++YR A   +LVYD++   +F+ +  W  E   +A+         V
Sbjct: 63  WDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFV 122

Query: 117 LVG 119
           ++G
Sbjct: 123 ILG 125

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 66.4 bits (163), Expect = 9e-13
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 202 NKIDRED--REIPTEVGEDFAKRH-DMYYLETSAKASDNVEKLFMQIAAELMEK 252
           NKID E+  + +  +  ++ AK   D+    TSAK + NV+  F +IA   +++
Sbjct: 126 NKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  191 bits (487), Expect = 1e-56
 Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 7/125 (5%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFT--QGVFPPGQGATIGVDFMIKTVEINNERIKLQ 59
                  KV +VG A VGK+ L+  FT     F      T GV+ ++  V I +  + ++
Sbjct: 15  ITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVE 74

Query: 60  IW--DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY---ASFKVL 114
           ++  DTAG + ++     Y+   +  ILV+D+S   +F+    W   ++         + 
Sbjct: 75  LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR 134

Query: 115 RVLVG 119
            VLV 
Sbjct: 135 AVLVA 139

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 70.8 bits (174), Expect = 5e-14
 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 202 NKIDRED--REIPTEVGEDFAKRHDMYYLETSAKA-SDNVEKLFMQIAAELMEKLAEKLT 258
           NK D      ++  ++ +D+A  + + + + SA     + +  F+ IA        +K+ 
Sbjct: 140 NKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYEDKVA 199

Query: 259 IMHDRG 264
              D  
Sbjct: 200 AFQDAC 205

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  178 bits (453), Expect = 2e-52
 Identities = 48/115 (41%), Positives = 69/115 (60%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K+VL+G A VGK+ +V RF    F   +  TIG  F+ + V IN   +K +IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
           RF S+   YYR+A A ++VYD++   +F     W++E+ E AS  ++  LVG   
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKI 118

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 59.0 bits (143), Expect = 2e-10
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 6/74 (8%)

Query: 185 YLASLEGHSNN--IHCMARNKID----REDREIPTEVGEDFAKRHDMYYLETSAKASDNV 238
           ++  L   ++   I  +  NKID      +R++  E GE  A+   + + ETSAK  +NV
Sbjct: 97  WVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENV 156

Query: 239 EKLFMQIAAELMEK 252
             +F+ I  ++  K
Sbjct: 157 NDVFLGIGEKIPLK 170

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  171 bits (435), Expect = 1e-49
 Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 7/118 (5%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPG--QGATIGVDFMIKTVEINNER---IKLQIWD 62
            K+++VGN G GKT L+++  +        Q AT+G+D     ++I ++R   + L +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 63  TAGQERFRSITQSYYRSAHALILVYDISC-QPTFDCLTDWLREIEEYASFKVLRVLVG 119
            AG+E F S    +       + VYD+S  Q   D +  WL  I+  AS     +LVG
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVG 119

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 9/77 (11%), Positives = 31/77 (40%), Gaps = 10/77 (12%)

Query: 186 LASLEGHSNNIHCM-ARNKID----REDREIPTEVGEDFAKRHDM-----YYLETSAKAS 235
           L +++  +++   +     +D    ++ +   +++ ++   +        Y+   + + S
Sbjct: 103 LFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEES 162

Query: 236 DNVEKLFMQIAAELMEK 252
           D + KL   I  E +  
Sbjct: 163 DALAKLRKTIINESLNF 179

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  166 bits (422), Expect = 1e-47
 Identities = 45/154 (29%), Positives = 65/154 (42%), Gaps = 39/154 (25%)

Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIK----- 57
           + K  +K VL+G + VGK+ +V R T+  F      TIG  F    V +N+  IK     
Sbjct: 3   EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62

Query: 58  --------------------------------LQIWDTAGQERFRSITQSYYRSAHALIL 85
                                             IWDTAGQER+ SI   YYR A   I+
Sbjct: 63  EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122

Query: 86  VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           V+DIS   T D    W+ +++  ++   + +LV 
Sbjct: 123 VFDISNSNTLDRAKTWVNQLKISSN--YIIILVA 154

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 79.9 bits (197), Expect = 3e-17
 Identities = 17/68 (25%), Positives = 39/68 (57%)

Query: 186 LASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI 245
           +  L+  SN I  +  NKID+   ++     + +A+ +++ +++TSAK   N++ +F  +
Sbjct: 139 VNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYML 198

Query: 246 AAELMEKL 253
           A E+ + +
Sbjct: 199 AEEIYKNI 206

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  160 bits (408), Expect = 9e-46
 Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 2/120 (1%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
                +FKV+LVG +GVGK+ L   F               D   + + ++ E + L ++
Sbjct: 18  GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVY 77

Query: 62  DTAGQERFRS-ITQSYYRSAHALILVYDISCQPTFDCLTDWLREI-EEYASFKVLRVLVG 119
           D   Q      +     ++  A ++V+ ++ + +F  + + L  +        +  +LVG
Sbjct: 78  DIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVG 137

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score = 65.7 bits (161), Expect = 2e-12
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
           NK D    RE+  E G   A      ++ETSA    N  +LF     ++  +    
Sbjct: 138 NKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRN 193

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  159 bits (404), Expect = 1e-45
 Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 2/115 (1%)

Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
           +FKV+LVG +GVGK+ L   F               D   + + ++ E + L ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61

Query: 67  ERFRSITQS-YYRSAHALILVYDISCQPTFDCLTDWLREI-EEYASFKVLRVLVG 119
                  Q    ++  A ++V+ ++ + +F  + + L  +        +  +LVG
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVG 116

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score = 65.6 bits (161), Expect = 1e-12
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
           NK D    RE+  E G   A      ++ETSA    N  +LF     ++  +
Sbjct: 117 NKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  154 bits (392), Expect = 1e-43
 Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
                  K+V+VG  GVGK+ L  +F Q  F      TI  D   K   ++    +L I 
Sbjct: 4   PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDIL 62

Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY-ASFKVLRVLVG 119
           DTAGQE F ++ + Y R+ H  +LV+ I+ + +F+ +     +I           VLVG
Sbjct: 63  DTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVG 121

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 64.1 bits (157), Expect = 5e-12
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKL 257
           NK D E  R++P      F   H + Y E SAK   NV++ F Q+   + +   ++L
Sbjct: 122 NKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQEL 178

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  151 bits (385), Expect = 2e-42
 Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 1   MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
           M +    ++VV+ G  GVGK+ LV RF +G F      TI   +  + +  +     LQI
Sbjct: 2   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQI 60

Query: 61  WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY--ASFKVLRVLV 118
            DT G  +F ++ +      HA ILV+ ++ + + + L    + I +   +   +  +LV
Sbjct: 61  TDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLV 120

Query: 119 G 119
           G
Sbjct: 121 G 121

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 65.7 bits (161), Expect = 2e-12
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKLTIMH 261
           NK D   RE+ T   +  A+     ++ETSAK + NV++LF ++      +         
Sbjct: 122 NKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNI--D 179

Query: 262 DRGVGMLTRIYNIKKAC 278
            +  G   R   +K  C
Sbjct: 180 GKRSGKQKRTDRVKGKC 196

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  151 bits (383), Expect = 2e-42
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
           ++   L KV++VG+ GVGK+ L  +F    F      T    +  K V ++ E +++ I 
Sbjct: 13  QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDIL 71

Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY-ASFKVLRVLVG 119
           DTAGQE + +I  +Y+RS    + V+ I+   +F    D+  +I        V  +LVG
Sbjct: 72  DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 130

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 63.0 bits (154), Expect = 2e-11
 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
           NK D ED R++  E  ++ A++ ++ Y+ETSAK   NV+K+F  +  E+  +
Sbjct: 131 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 182

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  149 bits (378), Expect = 9e-42
 Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
           +    +K+V+VG+ GVGK+ L  +F Q +F      TI  D  +K  EI+N+   L + D
Sbjct: 14  ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILDVLD 72

Query: 63  TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVG 119
           TAGQE F ++ + Y R+    ++VY ++ + +F+ +  + + I           +LV 
Sbjct: 73  TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 130

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score = 58.3 bits (142), Expect = 6e-10
 Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAK-ASDNVEKLFMQIAAELMEK 252
           NK+D    R++  + G++ A ++++ Y+ETSAK    NV+K F  +   + ++
Sbjct: 131 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  149 bits (378), Expect = 2e-41
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
           ++   L KV++VG+ GVGK+ L  +F    F      T    +  K V ++ E +++ I 
Sbjct: 9   QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDIL 67

Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY-ASFKVLRVLVG 119
           DTAGQE + +I  +Y+RS    + V+ I+   +F    D+  +I        V  +LVG
Sbjct: 68  DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 126

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score = 63.0 bits (154), Expect = 2e-11
 Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
           NK D ED R++  E  ++ A++ ++ Y+ETSAK   NV+K+F  +  E+  +  E 
Sbjct: 127 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMED 182

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  147 bits (374), Expect = 2e-41
 Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 2/114 (1%)

Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
           L KV++VG+ GVGK+ L  +F    F      T    +  K V ++ E +++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQ 62

Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY-ASFKVLRVLVG 119
           E + +I  +Y+RS    + V+ I+   +F    D+  +I        V  +LVG
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 116

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score = 63.3 bits (155), Expect = 8e-12
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
           NK D ED R++  E  ++ A + ++ Y+ETSAK   NV+K+F  +  E+  +
Sbjct: 117 NKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  147 bits (373), Expect = 3e-41
 Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 2/113 (1%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +K+V+VG  GVGK+ L  +  Q  F      TI   +  K V I+ E   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVG 119
            + ++   Y R+    + V+ I+   +F+ +  +  +I+    S  V  VLVG
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score = 64.4 bits (158), Expect = 3e-12
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
           NK D   R + +   +D A+ + + Y+ETSAK    VE  F  +  E+ +
Sbjct: 116 NKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  146 bits (372), Expect = 4e-41
 Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 2/113 (1%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +KVV++G+ GVGK+ L  +F  G F      TI  DF  K +E+++    L+I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY-ASFKVLRVLVG 119
           +F S+   Y ++    ILVY +  Q +F  +     +I       KV  +LVG
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVG 115

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 59.4 bits (145), Expect = 1e-10
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
           NK+D E  RE+ +  G   A+     ++ETSAK+   V++LF +I  ++
Sbjct: 116 NKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  146 bits (371), Expect = 7e-41
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 2/113 (1%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K+ ++G   VGK+ L  +F +G F      TI   F  K + +N +   LQ+ DTAGQ+
Sbjct: 7   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQD 65

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI-EEYASFKVLRVLVG 119
            +    Q+Y    +  ILVY ++   +F+ +     ++ +     ++  +LVG
Sbjct: 66  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVG 118

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score = 61.0 bits (149), Expect = 5e-11
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
           NK D    R I  E G+  A+  +  +LE+SAK +     +F +I  E  + 
Sbjct: 119 NKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKM 170

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  146 bits (372), Expect = 1e-40
 Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 2/113 (1%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            KVV++G   VGKT L  +F +G F  G   T+   +  K V +  +   L + DTAGQ+
Sbjct: 25  RKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQD 83

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI-EEYASFKVLRVLVG 119
            +  +  S+    H  +LVY ++   +F  +    +++ E +   +V  VLVG
Sbjct: 84  EYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVG 136

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score = 61.8 bits (151), Expect = 5e-11
 Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
           NK D    RE+    G+  A+     ++E+SA+ +   + +F ++  E+   
Sbjct: 137 NKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARV 188

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  145 bits (369), Expect = 1e-40
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 3/114 (2%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           ++V + G  GVGK+ LV RF +G F      T+   +  + +  +     LQI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA--SFKVLRVLVG 119
           +F ++ +      HA ILVY I+ + + + L     +I E       +  +LVG
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVG 116

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 60.6 bits (148), Expect = 6e-11
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
           NK D    RE+ +   E  A+     ++ETSAK + NV++LF ++      +
Sbjct: 117 NKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR 168

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  143 bits (364), Expect = 1e-39
 Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 2/113 (1%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +K+V+VG  GVGK+ L  +  Q  F      TI   +  K V I+ E   L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 63

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVG 119
            + ++   Y R+    + V+ I+   +F+ +  +  +I+    S  V  VLVG
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score = 65.3 bits (160), Expect = 3e-12
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
           NK D   R + T+  +D A+ + + ++ETSAK    V+  F  +  E+ + 
Sbjct: 117 NKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  143 bits (362), Expect = 2e-39
 Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 2/113 (1%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +K+V+VG  GVGK+ L  +  Q  F      TI   +  K V I+ E   L I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 80

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVG 119
            + ++   Y R+    + V+ I+   +F  +  +  +I+    S  V  VLVG
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVG 133

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score = 66.9 bits (164), Expect = 8e-13
 Identities = 18/56 (32%), Positives = 29/56 (51%)

Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKL 257
           NK D   R + T+   + AK + + ++ETSAK    VE  F  +  E+ +   +KL
Sbjct: 134 NKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKL 189

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  142 bits (360), Expect = 2e-39
 Identities = 40/113 (35%), Positives = 64/113 (56%), Gaps = 2/113 (1%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +K+V++G+ GVGK+ L  +F QG+F      TI   +  K VE++ ++  L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY-ASFKVLRVLVG 119
           +F ++   Y ++     LVY I+ Q TF+ L D   +I     +  V  +LVG
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVG 115

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 54.8 bits (133), Expect = 7e-09
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 202 NKIDRED-REIPTEVGEDFAKRH-DMYYLETSAKASDNVEKLFMQIAAE 248
           NK D ED R +  E G++ A++  +  +LE+SAK+  NV ++F  +  +
Sbjct: 116 NKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQ 164

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  141 bits (358), Expect = 3e-39
 Identities = 27/114 (23%), Positives = 56/114 (49%), Gaps = 3/114 (2%)

Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
           ++KV+L+G  GVGK+ L R F  GV    +    G  +  +++ ++ E   L ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIF-GGVEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQ 59

Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY-ASFKVLRVLVG 119
           +  R +         A ++VY ++ + +F+  ++   ++     +  V  +LVG
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVG 113

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score = 63.7 bits (156), Expect = 6e-12
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
           NK D    RE+  + G   A   D  ++ETSA    NV+ LF  +  ++  +
Sbjct: 114 NKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  141 bits (357), Expect = 5e-39
 Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 4/116 (3%)

Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
           L++VVL+G+ GVGKT L   F            +G D   +T+ ++ E   L + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEA 62

Query: 67  ERFRSIT--QSYYRSAHALILVYDISCQPTFDCLTDWLREI-EEYASFKVLRVLVG 119
           E+       +S  +   A ++VY I+ + +F+  ++   ++   + +  V  +LVG
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVG 118

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score = 63.3 bits (155), Expect = 8e-12
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
           NK D    RE+  E G   A   D  ++ETSA    NV +LF  +  +L  +  + 
Sbjct: 119 NKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRRDS 174

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  133 bits (336), Expect = 7e-36
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 4   YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
                K+ + G AGVGK+ LV RF    F      T+   +      I++E + ++I DT
Sbjct: 25  KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDT 83

Query: 64  AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY-ASFKVLRVLVG 119
           AGQE        + R     +LVYDI+ + +F+ +      ++E      V  +LVG
Sbjct: 84  AGQEDTIQREG-HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVG 139

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score = 57.2 bits (139), Expect = 2e-09
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAK-ASDNVEKLFMQIAAELMEKLAEK 256
           NK D +  R++ TE GE  A      + E SA     N+ ++F ++  E+  +   +
Sbjct: 140 NKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRMVQ 196

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  131 bits (332), Expect = 2e-35
 Identities = 24/115 (20%), Positives = 53/115 (46%), Gaps = 5/115 (4%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
             + ++G  G GK+ L  +F    F       +   +      ++++ + L++ DTA  +
Sbjct: 22  VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLD 80

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA---SFKVLRVLVG 119
             R+  + Y   AHA ++VY +  + +FD  + +L  +  +A      +  +L+G
Sbjct: 81  TPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLG 134

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 56.4 bits (137), Expect = 2e-09
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKAS-DNVEKLFMQIAAELMEK 252
           NK+D    R++    G   A R    + E SA    ++V+ +F +   E   +
Sbjct: 135 NKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARRE 187

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  131 bits (332), Expect = 2e-35
 Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 7/118 (5%)

Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNER---IKLQIWD 62
            ++VVL+G  GVGK+ L   F             +G D   +T+ ++ E    I L +W+
Sbjct: 6   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65

Query: 63  TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI-EEYASFKVLRVLVG 119
             G+  +  +     +   A ++VY I+ + +F+  ++   ++     +  +  +LVG
Sbjct: 66  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 121

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
           NK D    RE+    G   A   D  ++ETSA    NV++LF  I  ++  +   K
Sbjct: 122 NKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSK 177

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  130 bits (330), Expect = 3e-35
 Identities = 21/116 (18%), Positives = 48/116 (41%), Gaps = 10/116 (8%)

Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
             ++ ++G+A  GK+ L+ RF  G +      T    +  K + ++ +   + I + AG 
Sbjct: 7   ELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGA 64

Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY---ASFKVLRVLVG 119
              +     +   A A+I V+ +  + +F  ++    ++          +   LVG
Sbjct: 65  PDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVG 115

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 202 NKIDRED-REIPTEVGEDF-AKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
           ++I     R +         A      Y ET A    NV+++F ++A +++    ++
Sbjct: 118 DRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQ 174

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  139 bits (352), Expect = 4e-35
 Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 12/124 (9%)

Query: 4   YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEI--------NNER 55
           +    KV L+G+   GKT L+++     F P +  T G++ + K              + 
Sbjct: 38  HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKE 97

Query: 56  IKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLR 115
                WD  GQE   +  Q +   +   +L+ D     T      WLR IE+Y     + 
Sbjct: 98  CLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYGGKSPV- 153

Query: 116 VLVG 119
           ++V 
Sbjct: 154 IVVM 157

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 61.5 bits (149), Expect = 5e-10
 Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 2/71 (2%)

Query: 184 FYLASLEGHSNNIHCM-ARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKL 241
           ++L  +E +      +   NKID      I  +   +     +  +   S K  D VE +
Sbjct: 139 YWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESI 198

Query: 242 FMQIAAELMEK 252
              + + ++  
Sbjct: 199 AKSLKSAVLHP 209

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  131 bits (331), Expect = 6e-35
 Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 7/123 (5%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGA-TIGVDFMIKTVEINNER---IK 57
           E     ++VVL+G  GVGK+ L   F             +G D   +T+ ++ E    I 
Sbjct: 32  ESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIIL 91

Query: 58  LQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI-EEYASFKVLRV 116
           L +W+  G+  +  +     +   A ++VY I+ + +F+  ++   ++     +  +  +
Sbjct: 92  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 149

Query: 117 LVG 119
           LVG
Sbjct: 150 LVG 152

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score = 64.7 bits (158), Expect = 5e-12
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
           NK D    RE+    G   A   D  ++ETSA    NV++LF  I  ++  +   K
Sbjct: 153 NKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSK 208

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  129 bits (327), Expect = 8e-35
 Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 8/113 (7%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            KV +VGN   GK+ LV R+  G +   + +  G  F  K + ++ +   L I D  G  
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYVQ-EESPEGGRF-KKEIVVDGQSYLLLIRDEGGPP 78

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVG 119
             +     +     A++ V+ +  + +F  + ++   +  +  + +V  VLVG
Sbjct: 79  ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVG 126

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 52.2 bits (126), Expect = 7e-08
 Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 4/55 (7%)

Query: 202 NKID---REDREIPTEVGEDFAKR-HDMYYLETSAKASDNVEKLFMQIAAELMEK 252
            +        R I        +       Y ET A    NVE++F  +A +++  
Sbjct: 127 TQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVAL 181

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  117 bits (294), Expect = 5e-30
 Identities = 55/237 (23%), Positives = 89/237 (37%), Gaps = 73/237 (30%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            KVVLVG+ G GKT L+  F  G FP     T+   +M+  +++  + + L IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN-LQVKGKPVHLHIWDTAGQD 93

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYASFKVLRVLVGGTSGLKI 126
            +  +   +Y  A  L+L +D++   +FD     W  E+  +   KV  ++VG       
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVG------- 145

Query: 127 VNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYL 186
                                    KTDL +D+ ++  L                     
Sbjct: 146 ------------------------CKTDLRKDKSLVNKLR-------------------- 161

Query: 187 ASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR-HDMYYLETSAKASDNVEKLF 242
                                   +    G++ A+    + YLE SA+  DNV  +F
Sbjct: 162 ------------------RNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  114 bits (288), Expect = 2e-29
 Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 1   MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
           +E+ K   K+V+VG+  VGKTCL+  F++G  P     T+  +F    ++  NE   L +
Sbjct: 17  IENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHL 75

Query: 61  WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
           WDTAGQE +  +    Y  +  ++L + ++ + +FD ++  W  EI+ Y       VLVG
Sbjct: 76  WDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLVG 134

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 4/45 (8%)

Query: 202 NKID-REDRE--IPTEVGEDFAKRHD-MYYLETSAKASDNVEKLF 242
            K+D R+D    +  + G+D  ++   + Y+E S+ A   + ++F
Sbjct: 135 LKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  112 bits (282), Expect = 1e-28
 Identities = 51/236 (21%), Positives = 89/236 (37%), Gaps = 73/236 (30%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V+VG+   GKTCL+  F++  FP     T+  +  I  +E++ ++++L +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELALWDTAGQED 85

Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLKIV 127
           +  +    Y     +++ + I    + + + + W  E++ +    V  +LVG        
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG-------- 136

Query: 128 NEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLA 187
                                  +K DL +DEH    L                      
Sbjct: 137 -----------------------NKKDLRQDEHTRRELA--------------------- 152

Query: 188 SLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR-HDMYYLETSAKASDNVEKLF 242
                              +   + +E G D A R     YLE SAK  + V ++F
Sbjct: 153 -----------------KMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  110 bits (278), Expect = 6e-28
 Identities = 50/251 (19%), Positives = 92/251 (36%), Gaps = 74/251 (29%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V+VG+   GKTCL+  F++  FP     T+  +++   +E++ ++++L +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 85

Query: 69  FRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYASFKVLRVLVGGTSGLKIV 127
           +  +    Y     +++ + +    + +     W+ E++ +    V  +LV         
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVA-------- 136

Query: 128 NEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLA 187
                                  +K DL  DEHV   L                      
Sbjct: 137 -----------------------NKKDLRSDEHVRTELA--------------------- 152

Query: 188 SLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR-HDMYYLETSAKASDNVEKLFMQ-I 245
                              +   + T+ G   A R     YLE SAK  + V ++F    
Sbjct: 153 -----------------RMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETAT 195

Query: 246 AAELMEKLAEK 256
            A L ++   +
Sbjct: 196 RAALQKRYGSQ 206

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  109 bits (274), Expect = 2e-27
 Identities = 46/237 (19%), Positives = 77/237 (32%), Gaps = 73/237 (30%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   FP     T+  D     V ++ + + L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYASFKVLRVLVGGTSGLKI 126
            +  +    Y      ++ + +    +F+     W  E+  +       +LVG       
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVG------- 141

Query: 127 VNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYL 186
                                    K DL +D+  +  L                     
Sbjct: 142 ------------------------TKLDLRDDKDTIEKLK-------------------- 157

Query: 187 ASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR-HDMYYLETSAKASDNVEKLF 242
                             +++   I    G   AK    + YLE SA     ++ +F
Sbjct: 158 ------------------EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  107 bits (269), Expect = 5e-27
 Identities = 46/236 (19%), Positives = 77/236 (32%), Gaps = 73/236 (30%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K V+VG+  VGKTCL+  +T   FP     T+  D     V ++ + + L +WDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65

Query: 69  FRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYASFKVLRVLVGGTSGLKIV 127
           +  +    Y      ++ + +    +F+     W  E+  +       +LVG        
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVG-------- 116

Query: 128 NEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLA 187
                                   K DL +D+  +  L                      
Sbjct: 117 -----------------------TKLDLRDDKDTIEKLK--------------------- 132

Query: 188 SLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR-HDMYYLETSAKASDNVEKLF 242
                            +++   I    G   AK    + YLE SA     ++ +F
Sbjct: 133 -----------------EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  105 bits (265), Expect = 2e-26
 Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 3/113 (2%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V VG+  VGKTCL+  +T   FP     T+  +F    V +N   + L +WDTAGQE
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGATVNLGLWDTAGQE 67

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
            +  +    YR A   IL + +  + +++ ++  W+ E++ YA   V  VLVG
Sbjct: 68  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVG 119

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  105 bits (265), Expect = 2e-26
 Identities = 52/237 (21%), Positives = 88/237 (37%), Gaps = 74/237 (31%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V+VG++  GKT L+  F +  FP     T+  ++   + EI+ +RI+L +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSPY 67

Query: 69  FRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYASFKVLRVLVGGTSGLKIV 127
           + ++    Y  + A+++ +DIS   T D  L  W  EI+E+       +LVG        
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVG-------- 118

Query: 128 NEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLA 187
                                   K+DL  D   L  L                      
Sbjct: 119 -----------------------CKSDLRTDVSTLVELS--------------------- 134

Query: 188 SLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR-HDMYYLETSAKAS-DNVEKLF 242
                            +     +  + G + AK+     Y+E SA  S ++V  +F
Sbjct: 135 -----------------NHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 174

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  105 bits (265), Expect = 2e-26
 Identities = 52/251 (20%), Positives = 86/251 (34%), Gaps = 74/251 (29%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K VLVG+  VGKT LV  +T   +P     T   D     V ++   ++LQ+ DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTAGQDE 80

Query: 69  FRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYASFKVLRVLVGGTSGLKIV 127
           F  +    Y +    +L + +    +F      W+ EI  +   K   +LVG        
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVG-------- 131

Query: 128 NEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLA 187
                                   ++DL ED  VL  L                      
Sbjct: 132 -----------------------TQSDLREDVKVLIELD--------------------- 147

Query: 188 SLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR-HDMYYLETSAKASDNVEKLFMQ-I 245
                              +++ +P E  +  A+      Y+E SA    N++++F   I
Sbjct: 148 -----------------KCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAI 190

Query: 246 AAELMEKLAEK 256
            A +     ++
Sbjct: 191 VAGIQYSDTQQ 201

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  104 bits (260), Expect = 1e-25
 Identities = 52/244 (21%), Positives = 89/244 (36%), Gaps = 74/244 (30%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
            +     K+V+VG++  GKT L+  F +  FP     T+  ++   + EI+ +RI+L +W
Sbjct: 23  PNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLW 81

Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYASFKVLRVLVGG 120
           DT+G   + ++    Y  + A+++ +DIS   T D  L  W  EI+E+       +LVG 
Sbjct: 82  DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVG- 139

Query: 121 TSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARN 180
                                          K+DL  D   L  L               
Sbjct: 140 ------------------------------CKSDLRTDVSTLVELS-------------- 155

Query: 181 EACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR-HDMYYLETSAKAS-DNV 238
                                   +     +  + G + AK+     Y+E SA  S ++V
Sbjct: 156 ------------------------NHRQTPVSYDQGANMAKQIGAATYIECSALQSENSV 191

Query: 239 EKLF 242
             +F
Sbjct: 192 RDIF 195

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  103 bits (259), Expect = 2e-25
 Identities = 49/237 (20%), Positives = 83/237 (35%), Gaps = 73/237 (30%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +    FP     T+  D    +V +  ++  L ++DTAGQE
Sbjct: 19  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQE 77

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYASFKVLRVLVGGTSGLKI 126
            +  +    Y      ++ + +    +F     +W+ E++EYA   V  +L+G       
Sbjct: 78  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIG------- 129

Query: 127 VNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYL 186
                                    + DL +D   LA L                     
Sbjct: 130 ------------------------TQIDLRDDPKTLARLN-------------------- 145

Query: 187 ASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR-HDMYYLETSAKASDNVEKLF 242
                             D +++ I  E G+  AK      Y+E SA     ++ +F
Sbjct: 146 ------------------DMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  103 bits (259), Expect = 2e-25
 Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 3/113 (2%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K+VLVG+   GKT +++   +  +P     T+  ++    +E   +R++L +WDT+G  
Sbjct: 28  CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-CLETEEQRVELSLWDTSGSP 86

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYASFKVLRVLVG 119
            + ++    Y  + A++L +DIS   T D  L  W  EI +Y       +L+G
Sbjct: 87  YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIG 138

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 97.8 bits (244), Expect = 2e-23
 Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 3/113 (2%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V VG+  VGKTC++  +T   FP     T+  D     V ++ + + L +WDTAGQE
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTAGQE 68

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYASFKVLRVLVG 119
            +  +    YR A   +L + +  + +++  L  W+ E+  +A   V  VLVG
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVG 120

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 74.4 bits (183), Expect = 2e-15
 Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 11/115 (9%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGA----------TIGVDFMIKTVE-INNERI 56
           FK+V  G    GKT  ++     V    +G           T+  DF+   +  +   + 
Sbjct: 15  FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74

Query: 57  KLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASF 111
           +  ++   GQ  + +  +   R    ++ V D +               E  A +
Sbjct: 75  RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY 129

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 71.4 bits (176), Expect = 2e-14
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 8/83 (9%)

Query: 8  FKVVLVG--NAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
           ++ LVG   +G  KT  V     G F      T+G  F ++ +   N  + +++WD  G
Sbjct: 23 MELTLVGLQYSG--KTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIKLWDIGG 76

Query: 66 QERFRSITQSYYRSAHALILVYD 88
          Q RFRS+ + Y R   A++ + D
Sbjct: 77 QPRFRSMWERYCRGVSAIVYMVD 99

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 76.0 bits (186), Expect = 2e-14
 Identities = 79/498 (15%), Positives = 141/498 (28%), Gaps = 156/498 (31%)

Query: 10  VVLVGNAGVGKTCLV----------RRFTQGVF--------------PPGQGATIGVDFM 45
           V++ G  G GKT +            +    +F                 Q     +D  
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 46  IKTVEINNERIKLQIWDTAGQERFRSI--TQSYYRSAHALIL--VYDISCQPTFD--C-- 97
             +   ++  IKL+I     Q   R +  ++ Y      L+L  V +      F+  C  
Sbjct: 213 WTSRSDHSSNIKLRIHSI--QAELRRLLKSKPYENC--LLVLLNVQNAKAWNAFNLSCKI 268

Query: 98  -LTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMAS------AAGLL------------- 137
            LT   R  +      V   L   T+    ++  +          LL             
Sbjct: 269 LLTT--RFKQ------VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 138 --CTVDP---ALATALASDKTD-LDEDEHVLACLLMVFVAVCIPKLARNE--ACFY-LAS 188
              T +P   ++      D     D  +HV    L   +   +  L   E    F  L+ 
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS- 379

Query: 189 LEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLET--SAKASDNVEKLFMQIA 246
                          +      IPT +            L          +V      + 
Sbjct: 380 ---------------VFPPSAHIPTIL------------LSLIWFDVIKSDVM----VVV 408

Query: 247 AELMEK-LAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFP 305
            +L +  L EK      +       I +I       + K    ++ +L    + IV  + 
Sbjct: 409 NKLHKYSLVEK------QPKESTISIPSI-----YLELKVKLENEYALH---RSIVDHYN 454

Query: 306 NIDIKSVSGISQIRSDIVKSLSLYYYTFVDLLHFKDC-----------VYLSGHF-DAQI 353
                    +     D       Y+Y+ +   H K+            V+L   F + +I
Sbjct: 455 IPKTFDSDDLIPPYLD------QYFYSHIG-HHLKNIEHPERMTLFRMVFLDFRFLEQKI 507

Query: 354 ASRRKKDKNNKKILNEIIKPGAESYRKTREEAQIASRRKKDKNNKKILNEIIK--PGAES 411
                    +  ILN + +   + Y+       I      D   ++++N I+   P  E 
Sbjct: 508 RHDSTAWNASGSILNTLQQ--LKFYKP-----YI---CDNDPKYERLVNAILDFLPKIEE 557

Query: 412 YRKTREELTTMDKLHMAL 429
                 + T  D L +AL
Sbjct: 558 -NLICSKYT--DLLRIAL 572

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 8e-05
 Identities = 89/623 (14%), Positives = 197/623 (31%), Gaps = 158/623 (25%)

Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKA---SDNVEKLFMQIAAE-----LMEKL 253
            +   + ++I +   + F    D   ++   K+    + ++ + M   A      L   L
Sbjct: 12  GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71

Query: 254 AEKLTIMHDRGVGMLTRI-YN-----IKKACGDAKSKPSFLSDKSLESCIKQI---VKKF 304
             K   M  + V  + RI Y      IK         PS +  +       ++    + F
Sbjct: 72  LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ----PS-MMTRMYIEQRDRLYNDNQVF 126

Query: 305 PNIDIKSVSGISQIRSDIVKSLSLYYYTFVDLLH----F-KDCVYLS--------GHFDA 351
              ++  +    ++R  +   L L     V L+       K  V L            D 
Sbjct: 127 AKYNVSRLQPYLKLRQAL---LELRPAKNV-LIDGVLGSGKTWVALDVCLSYKVQCKMDF 182

Query: 352 QI----ASRRKKDKNNKKILNEI---IKP-------GAESYRKTREEAQIASRRK-KDKN 396
           +I           +   ++L ++   I P        + + +      Q   RR  K K 
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 397 NKK---IL-----NEIIKPGAESYR-KTREELTTMDKLHMALTELCFAINYCTNIQVWDF 447
            +    +L      +     A +   K    LTT  K    +T+   A    T+I +   
Sbjct: 243 YENCLLVLLNVQNAKAWN--AFNLSCKIL--LTTRFK---QVTDFLSAATT-THISLDHH 294

Query: 448 --TFAPREYLHQHLESRFSRALVGMVMFN-PDTSEIAKPSELL-----ASVRAYMNVLQT 499
             T  P E     ++S   + L      + P   E+   +         S+R  +    T
Sbjct: 295 SMTLTPDE-----VKSLLLKYL-DCRPQDLP--REVLTTNPRRLSIIAESIRDGLA---T 343

Query: 500 VENYVHID---MTRVFNNALLQQT----QRM---------DSHGEKTVAALYIQWY---S 540
            +N+ H++   +T +  ++L        ++M          +H    +  L + W+    
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL--LSLIWFDVIK 401

Query: 541 EVLLRRVSETQVKSL----NLLNFLRVYTV--ENYVHIDMTRVFNNALLQQTQRMDSHGE 594
             ++  V++    SL       + + + ++  E  V ++     + +++       +   
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461

Query: 595 KTVAAL----YIQWY------------SEVLLRRVSAGNICFSLNQRAFVS--LTAEG-A 635
             +       Y   +               L R V      F L+ R F+   +  +  A
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV------F-LDFR-FLEQKIRHDSTA 513

Query: 636 IPFNAEEFSDVNELRALADLI---GPYGMKLLNELSLKAFNAAHEMVHNQSDVNFPRLGQ 692
              +    + + +L+     I    P   +L+N +          ++ ++    +  L +
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK----YTDLLR 569

Query: 693 MIMDYEVPMKKLSEEFIPHDSMR 715
           + +  E       +E I  ++ +
Sbjct: 570 IALMAE-------DEAIFEEAHK 585

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 72.3 bits (177), Expect = 7e-14
 Identities = 49/244 (20%), Positives = 77/244 (31%), Gaps = 73/244 (29%)

Query: 1   MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
            E  K L K V+VG+  VGKTCL+  +T   FP     T+  D     V ++ + + L +
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGL 207

Query: 61  WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYASFKVLRVLVG 119
           WDTAG E +  +    Y      ++ + +    +F      W  E+  +       +LVG
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVG 266

Query: 120 GTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLAR 179
                                           K DL +D+  +             KL  
Sbjct: 267 -------------------------------TKLDLRDDKDTIE------------KLKE 283

Query: 180 NEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYLETSAKASDNV 238
            +                             I    G   AK    + YLE SA     +
Sbjct: 284 KKLTP--------------------------ITYPQGLAMAKEIGAVKYLECSALTQRGL 317

Query: 239 EKLF 242
           + +F
Sbjct: 318 KTVF 321

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 69.6 bits (170), Expect = 1e-13
 Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 9/117 (7%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIG--VDFMIKTVEINNERIKLQIWDTAGQ 66
           +++L+G    GK+ + +        P +   +          +  ++  +  QIWD  GQ
Sbjct: 22  RILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSF-VNFQIWDFPGQ 79

Query: 67  ERFRSIT---QSYYRSAHALILVYDIS--CQPTFDCLTDWLREIEEYASFKVLRVLV 118
             F   T   +  +R   ALI V D           L   + +  +        V +
Sbjct: 80  MDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFI 136

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 67.7 bits (166), Expect = 4e-13
 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 9/84 (10%)

Query: 8  FKVVLVG--NAGVGKTCLVRRFTQGVFPPGQGA-TIGVDFMIKTVEINNERIKLQIWDTA 64
            V+ +G  N+G  KT ++ +             TIG  F I+  + ++  +   ++D +
Sbjct: 22 VHVLCLGLDNSG--KTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMS 75

Query: 65 GQERFRSITQSYYRSAHALILVYD 88
          GQ R+R++ + YY+   A+I V D
Sbjct: 76 GQGRYRNLWEHYYKEGQAIIFVID 99

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 66.8 bits (164), Expect = 5e-13
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 17/87 (19%)

Query: 8  FKVVLVG--NAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
           +++++G   AG  KT ++ R   G      P     TIG  F ++TV   N  +K Q+W
Sbjct: 8  MRILILGLDGAG--KTTILYRLQVGEVVTTIP-----TIG--FNVETVTYKN--LKFQVW 56

Query: 62 DTAGQERFRSITQSYYRSAHALILVYD 88
          D  G    R   + YY +  A+I V D
Sbjct: 57 DLGGLTSIRPYWRCYYSNTDAVIYVVD 83

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 66.9 bits (164), Expect = 6e-13
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 13/85 (15%)

Query: 8  FKVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
           +V+++G    GKT ++ R   G      P     T+G    ++T++  N  I  ++WD 
Sbjct: 23 IRVLMLGLDNAGKTSILYRLHLGDVVTTVP-----TVG--VNLETLQYKN--ISFEVWDL 73

Query: 64 AGQERFRSITQSYYRSAHALILVYD 88
           GQ   R   + Y+    A+I V D
Sbjct: 74 GGQTGVRPYWRCYFSDTDAVIYVVD 98

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 66.1 bits (162), Expect = 1e-12
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 13/85 (15%)

Query: 8  FKVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
           +++++G  G GKT ++ R   G      P     TIG  F ++T+   N  +KL +WD 
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEVVTTKP-----TIG--FNVETLSYKN--LKLNVWDL 69

Query: 64 AGQERFRSITQSYYRSAHALILVYD 88
           GQ   R   + YY    A+I V D
Sbjct: 70 GGQTSIRPYWRCYYADTAAVIFVVD 94

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 65.7 bits (161), Expect = 1e-12
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 17/87 (19%)

Query: 8  FKVVLVG--NAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
           KV++VG  NAG  KT ++ +F+        P     TIG    ++ + INN   +  +W
Sbjct: 22 HKVIIVGLDNAG--KTTILYQFSMNEVVHTSP-----TIG--SNVEEIVINN--TRFLMW 70

Query: 62 DTAGQERFRSITQSYYRSAHALILVYD 88
          D  GQE  RS   +YY +   +I+V D
Sbjct: 71 DIGGQESLRSSWNTYYTNTEFVIVVVD 97

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 65.7 bits (161), Expect = 1e-12
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 17/87 (19%)

Query: 8  FKVVLVG--NAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
           +++L+G  NAG  KT L+++        + P     T G  F IK+V+      KL +W
Sbjct: 17 VRILLLGLDNAG--KTTLLKQLASEDISHITP-----TQG--FNIKSVQSQG--FKLNVW 65

Query: 62 DTAGQERFRSITQSYYRSAHALILVYD 88
          D  GQ + R   +SY+ +   LI V D
Sbjct: 66 DIGGQRKIRPYWRSYFENTDILIYVID 92

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 64.9 bits (159), Expect = 2e-12
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 17/86 (19%)

Query: 9  KVVLVG--NAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
          ++++VG   AG  KT ++ +   G      P     TIG  F ++TVE  N  I   +WD
Sbjct: 2  RILMVGLDAAG--KTTILYKLKLGEIVTTIP-----TIG--FNVETVEYKN--ISFTVWD 50

Query: 63 TAGQERFRSITQSYYRSAHALILVYD 88
            GQ++ R + + Y+++   LI V D
Sbjct: 51 VGGQDKIRPLWRHYFQNTQGLIFVVD 76

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 65.0 bits (159), Expect = 3e-12
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 13/85 (15%)

Query: 8  FKVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
           +++++G    GKT ++++F       + P     T+G  F IKT+E      KL IWD 
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTISP-----TLG--FNIKTLEHRG--FKLNIWDV 69

Query: 64 AGQERFRSITQSYYRSAHALILVYD 88
           GQ+  RS  ++Y+ S   LI V D
Sbjct: 70 GGQKSLRSYWRNYFESTDGLIWVVD 94

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 65.0 bits (159), Expect = 3e-12
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 13/85 (15%)

Query: 8  FKVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
           KV++VG    GKT ++ +F+        P     TIG    ++ + INN   +  +WD 
Sbjct: 17 HKVIIVGLDNAGKTTILYQFSMNEVVHTSP-----TIG--SNVEEIVINN--TRFLMWDI 67

Query: 64 AGQERFRSITQSYYRSAHALILVYD 88
           GQE  RS   +YY +   +I+V D
Sbjct: 68 GGQESLRSSWNTYYTNTEFVIVVVD 92

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 64.5 bits (158), Expect = 4e-12
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 17/86 (19%)

Query: 9  KVVLVG--NAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
          K++ +G  NAG  KT L+          + P     T       + + I N  IK   +D
Sbjct: 25 KLLFLGLDNAG--KTTLLHMLKNDRLATLQP-----TWH--PTSEELAIGN--IKFTTFD 73

Query: 63 TAGQERFRSITQSYYRSAHALILVYD 88
            G  + R + + Y+   + ++ + D
Sbjct: 74 LGGHIQARRLWKDYFPEVNGIVFLVD 99

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 63.9 bits (156), Expect = 7e-12
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 13/102 (12%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
            ++++VG    GKT ++ +   G      P     TIG  F ++TVE  N  I   +WD 
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIG--FNVETVEYKN--ICFTVWDV 80

Query: 64  AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
            GQ++ R + + Y+++   LI V D + +       D L+++
Sbjct: 81  GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKM 122

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 17/86 (19%)

Query: 9   KVVLVG--NAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
           K+V +G  NAG  KT L+            P     T+      + + I    +    +D
Sbjct: 27  KLVFLGLDNAG--KTTLLHMLKDDRLGQHVP-----TLH--PTSEELTIAG--MTFTTFD 75

Query: 63  TAGQERFRSITQSYYRSAHALILVYD 88
             G  + R + ++Y  + + ++ + D
Sbjct: 76  LGGHIQARRVWKNYLPAINGIVFLVD 101

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 62.7 bits (152), Expect = 9e-11
 Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 9/106 (8%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIG--VDFMIKTVEINNERIKLQIWDTAGQ 66
           K++L+G +G GK+ +        +       +G  +D     +      + L +WD  GQ
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSN-YSAFDTRRLGATIDVEHSHLRFLGN-MTLNLWDCGGQ 62

Query: 67  ERF-----RSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEE 107
           + F            ++    LI V+D+        +  + + +++
Sbjct: 63  DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQ 108

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 59.4 bits (144), Expect = 4e-10
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 14/105 (13%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNER-IKLQIWDTAGQE 67
            V+ VG    GKT L  R   G +   Q  +I         ++NN R   L + D  G E
Sbjct: 9   AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSIT--DSSAIYKVNNNRGNSLTLIDLPGHE 65

Query: 68  RFR-SITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASF 111
             R  +   +  SA A++ V D +          + RE+++ A F
Sbjct: 66  SLRFQLLDRFKSSARAVVFVVDSA---------AFQREVKDVAEF 101

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 13/89 (14%)

Query: 4   YKFLFKVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQ 59
            K   ++++VG    GKT ++ +   G      P     TIG  F ++TVE  N  I   
Sbjct: 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIG--FNVETVEYKN--ISFT 212

Query: 60  IWDTAGQERFRSITQSYYRSAHALILVYD 88
           +WD  GQ++ R + + Y+++   LI V D
Sbjct: 213 VWDVGGQDKIRPLWRHYFQNTQGLIFVVD 241

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 27/171 (15%), Positives = 45/171 (26%), Gaps = 65/171 (38%)

Query: 14  GNAGVGKTCLVRRFTQGV---FPPGQGATIG-VDFMIKTVEINN--------------ER 55
           G  G+GK+CL  RF +     F     + +   DF  + V  ++                
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 56  IKLQIW-------DTAGQERFRSITQSYYRSA---------------------------- 80
            K+ I        D   Q    +  Q Y + A                            
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 81  ---------HALILVYDIS--CQPTFDCLTDWLREIEEYAS-FKVLRVLVG 119
                       +L  D+S      FD    ++  +    +  K   V+V 
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVL 205

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 50.0 bits (119), Expect = 8e-07
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
            K D    R I        +K  ++  +ETSA+++ NV+  F  +    ++K
Sbjct: 206 TKCDEGVERYIRDAHTFALSK-KNLQVVETSARSNVNVDLAFSTLVQL-IDK 255

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 54.7 bits (131), Expect = 4e-08
 Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 10/113 (8%)

Query: 10  VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERF 69
           V+L+G    GK+ + +        P     +           +   I L + +  GQ  +
Sbjct: 2   VLLMGVRRCGKSSICKVVFHN-MQPLDTLYLESTSNPSLEHFSTL-IDLAVMELPGQLNY 59

Query: 70  RS---ITQSYYRSAHALILVYDISCQPTFD--CLTDWLREIEEY---ASFKVL 114
                 ++  ++S  AL+ V D   +       L   +    +     + +VL
Sbjct: 60  FEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVL 112

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 15/104 (14%)

Query: 10  VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERF 69
           +++ G    GKT L+   T     P    T+     +   + +     + + D  G  + 
Sbjct: 15  IIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLSAADYDG--SGVTLVDFPGHVKL 68

Query: 70  RSITQSYYRSAHALI--LVYDISCQPTFDCLTDWLREIEEYASF 111
           R     Y ++    +  L++ +      D   D  +++   A F
Sbjct: 69  RYKLSDYLKTRAKFVKGLIFMV------DSTVD-PKKLTTTAEF 105

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 15/105 (14%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
            +++ G    GKT L+   T     P    T+     +   + +     + + D  G  +
Sbjct: 50  SIIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLSAADYDG--SGVTLVDFPGHVK 103

Query: 69  FRSITQSYYRSAHALI--LVYDISCQPTFDCLTDWLREIEEYASF 111
            R     Y ++    +  L++ +      D   D  +++   A F
Sbjct: 104 LRYKLSDYLKTRAKFVKGLIFMV------DSTVD-PKKLTTTAEF 141

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	730
3p8c_B	1128	NCK-associated protein 1; actin polymerization, pr	100.0
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.96
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.96
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.96
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.96
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.96
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.95
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.95
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.95
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.95
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.95
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.95
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.95
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.95
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.95
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.95
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.95
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.95
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.95
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.95
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.95
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.95
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.95
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.95
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.95
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.95
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.95
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.95
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.95
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.95
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.95
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.95
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.95
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.95
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.95
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.95
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.95
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.95
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.95
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.95
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.95
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.94
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.94
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.94
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.94
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.94
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.94
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.94
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.94
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.94
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.94
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.94
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.94
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.94
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.94
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.94
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.94
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.94
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.94
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.94
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.94
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.94
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.94
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.94
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.94
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.94
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.94
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.94
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.94
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.94
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.94
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.94
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.94
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.93
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.93
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.93
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.93
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.93
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.93
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.93
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.93
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.93
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.92
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.92
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.92
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.91
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.91
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.91
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.91
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.91
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.91
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.91
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.91
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.91
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.91
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.91
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.84
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.9
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.9
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.9
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.9
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.9
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.9
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.89
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.89
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.88
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.87
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.86
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.86
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.86
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.86
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.85
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.85
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.85
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.85
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.84
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.83
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.82
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.82
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.82
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.81
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.79
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.78
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.78
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.77
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.77
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.77
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.76
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.75
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.74
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.72
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.72
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.7
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.7
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.69
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.69
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.69
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.68
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.67
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.66
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.66
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.66
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.65
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.65
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.63
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.63
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.62
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.62
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.62
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.62
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.61
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.6
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.6
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.59
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.59
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.59
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.59
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.59
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.59
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.58
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.58
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.58
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.57
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.55
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.55
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.54
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.53
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.52
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.52
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.51
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.51
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.51
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.51
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.5
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.5
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.49
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.48
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.48
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.47
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.45
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.42
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.42
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.41
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.4
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.4
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.4
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.38
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.38
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.37
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.36
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.35
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.34
3p8c_B	1128	NCK-associated protein 1; actin polymerization, pr	99.34
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.31
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.31
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.28
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.28
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.27
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.19
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.17
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.14
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.11
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.0
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.98
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	98.96
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.92
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.85
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	98.85
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.8
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.62
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.47
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	98.36
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.2
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.09
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	97.87
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	97.82
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.79
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	97.7
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.64
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	97.63
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	97.61
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.47
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.36
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.35
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	97.23
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.78
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.74
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	96.74
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.46
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	95.96
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	95.59
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	95.41
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	95.03
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	94.78
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	94.51
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	93.64
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	93.43
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	93.15
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	92.88
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	92.77
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	92.56
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	92.34
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	92.33
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	92.28
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	91.97
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	91.94
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	91.79
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	91.76
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	91.7
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	91.49
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	91.46
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	91.37
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	91.18
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	91.15
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	91.07
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	91.07
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	90.93
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	90.93
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	90.92
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	90.73
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	90.55
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	90.55
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	90.45
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	90.38
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	90.32
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	90.21
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	90.19
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	90.16
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	90.13
4a74_A	231	DNA repair and recombination protein RADA; hydrola	90.12
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	89.98
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	89.95
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	89.93
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	89.92
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	89.79
1b0u_A	262	Histidine permease; ABC transporter, transport pro	89.79
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	89.77
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	89.67
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	89.59
1g6h_A	257	High-affinity branched-chain amino acid transport	89.57
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	89.56
1sgw_A	214	Putative ABC transporter; structural genomics, P p	89.55
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	89.46
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	89.46
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	89.4
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	89.38
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	89.33
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	89.32
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	89.27
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	89.26
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	89.25
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	89.24
1ji0_A	240	ABC transporter; ATP binding protein, structural g	89.22
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	89.17
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	89.14
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	89.13
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	89.1
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	89.09
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	89.05
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	89.0
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	88.99
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	88.93
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	88.88
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	88.85
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	88.81
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	88.78
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	88.74
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	88.72
2ghi_A	260	Transport protein; multidrug resistance protein, M	88.62
2eyu_A	261	Twitching motility protein PILT; pilus retraction	88.53
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	88.47
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	88.46
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	88.35
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	88.35
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	88.33
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	88.32
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	88.3
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	88.28
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	87.85
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	87.77
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	87.73
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	87.7
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	87.69
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	87.61
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	87.58
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	87.28
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	87.26
1via_A	175	Shikimate kinase; structural genomics, transferase	87.26
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	87.24
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	87.09
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	87.0
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	86.94
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	86.9
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	86.89
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	86.83
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	86.82
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	86.82
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	86.78
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	86.77
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	86.66
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	86.64
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	86.56
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	86.56
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	86.52
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	86.36
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	86.33
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	86.27
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	86.19
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	86.19
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	86.12
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	85.99
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	85.99
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	85.98
3kta_A	182	Chromosome segregation protein SMC; structural mai	85.96
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	85.9
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	85.89
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	85.85
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	85.79
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	85.73
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	85.71
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	85.71
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	85.69
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	85.65
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	85.63
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	85.6
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	85.57
2cvh_A	220	DNA repair and recombination protein RADB; filamen	85.53
3bos_A	242	Putative DNA replication factor; P-loop containing	85.5
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	85.44
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	85.38
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	85.37
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	85.35
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	85.34
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	85.26
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	85.18
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	85.18
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	85.13
2vli_A	183	Antibiotic resistance protein; transferase, tunica	85.0
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	84.87
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	84.77
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	84.74
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	84.74
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	84.68
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	84.62
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	84.59
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	84.59
2chg_A	226	Replication factor C small subunit; DNA-binding pr	84.52
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	84.29
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	84.25
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	84.16
2ewv_A	372	Twitching motility protein PILT; pilus retraction	84.12
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	84.11
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	84.05
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	83.9
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	83.54
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	83.5
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	83.49
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	83.39
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	83.35
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	83.12
2og2_A	359	Putative signal recognition particle receptor; nuc	83.05
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	83.0
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	82.99
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	82.81
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	82.78
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	82.73
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	82.72
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	82.55
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	82.35
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	82.16
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	82.14
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	81.95
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	81.92
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	81.8
1p9r_A	418	General secretion pathway protein E; bacterial typ	81.69
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	81.47
3co5_A	143	Putative two-component system transcriptional RES	81.14
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	80.76
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	80.71
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	80.69
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	80.65
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	80.65
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	80.51
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	80.31
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	80.29
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	80.22

>3p8c_B NCK-associated protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens}

Probab=100.00  E-value=9.1e-74  Score=676.02  Aligned_cols=245  Identities=53%  Similarity=0.872  Sum_probs=222.6

Q ss_pred             HHHHHhhhccCCccccccccCCCCcccccchhhhcchHHHHHHHHHHHHhhcccceeEEEeeeechHHHHHHhHHHHHHH
Q psy17467        386 QIASRRKKDKNNKKILNEIIKPGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESRFSR  465 (730)
Q Consensus       386 ~~~~kkkk~~k~kK~~~~~~~pg~es~~~~~~~~~~~d~~~~~l~~lc~~~~~~~~i~v~~~~f~p~eyl~~~l~~~f~~  465 (730)
                      ++.++|+||+|+||+.+++.+||+||+|+||+++|+|||+|++|||||+|||++++|+||||+|+|||||++|||+||++
T Consensus       639 ~~~~~k~kk~~~~k~~~~~~~PG~ES~r~~r~~~t~~dkl~~~LteLc~aln~~~~i~V~dh~f~PrEyL~~~Le~~f~~  718 (1128)
T 3p8c_B          639 QAVNKKSKKQTGKKGEPEREKPGVESMRKNRLVVTNLDKLHTALSELCFSINYVPNMVVWEHTFTPREYLTSHLEIRFTK  718 (1128)
T ss_dssp             HHTTC--------------CCTTGGGCCSCTTSCCHHHHHHHHHHHHHHHHTSCSCEEETTEEECHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcccccCccCCCCCCCCCccccccChHHHhhHHHHHHHHHHHHHHhccCCCeeEEeeeeccHHHHHHHHHHHHHH
Confidence            45666778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhccCCCCCcccCcHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHh
Q psy17467        466 ALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLR  545 (730)
Q Consensus       466 ~~~~~~~~~~~~~~~~rps~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~ll~~tq~~d~~~~~~~~~~~~~~~~~~~~~  545 (730)
                      +|++|++||++|++|+||||||++|||||++||++||||+||+|++||+|||||||++|++|++                
T Consensus       719 ~l~~~~~~~~~~~~i~RPSell~~l~a~m~vlq~~e~~v~iDvt~~i~~vLLqqtq~~D~~G~~----------------  782 (1128)
T 3p8c_B          719 SIVGMTMYNQATQEIAKPSELLTSVRAYMTVLQSIENYVQIDITRVFNNVLLQQTQHLDSHGEP----------------  782 (1128)
T ss_dssp             HHHHHTTCBTTTTBCCCHHHHHHHHHHHHHHHHHGGGTSSCCHHHHHHHHHHHTTSSBCTTSCB----------------
T ss_pred             HHHHHhccCCCccccCChHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhCCccccCCCc----------------
Confidence            9999999999999999999999999999999999999999999999999999999999999999                


Q ss_pred             hhhhhhhhhhcccchhheeeeccceeccchhhhhhhhhhhhhcccccCccchhhHHHHHHHHHHHhccCCCceEeecccc
Q psy17467        546 RVSETQVKSLNLLNFLRVYTVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLRRVSAGNICFSLNQR  625 (730)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~y~~wy~e~l~~~~~~~~~~~s~~~~  625 (730)
                                                                        |||++||+||+|+|+|+||+|||||||+++
T Consensus       783 --------------------------------------------------tit~~yt~WYle~llr~~s~~~iv~sp~~~  812 (1128)
T 3p8c_B          783 --------------------------------------------------TITSLYTNWYLETLLRQVSNGHIAYFPAMK  812 (1128)
T ss_dssp             --------------------------------------------------CHHHHHHHHHHHTHHHHHHTTSEEEETTTT
T ss_pred             --------------------------------------------------cHHHHHHHHHHHHHHHhccCCceEEccHHH
Confidence                                                              899999999999999999999999999999


Q ss_pred             cccccCCCCCccccccccCCHHHHHHHHHhHcchhhHHHHHHHHH----HhhchhhhhhcCCCCccccccceeeccccc
Q psy17467        626 AFVSLTAEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNELSLK----AFNAAHEMVHNQSDVNFPRLGQMIMDYEVP  700 (730)
Q Consensus       626 ~f~s~~~~~~~~~~ae~~~d~~el~al~~l~gpyg~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  700 (730)
                      ||||.+++|+++|+||+|||++||||||+||||||||+|||+|||    ..+|+.+++..|.|++..-.+.    |+.|
T Consensus       813 ~Fvs~~~~g~~~f~AE~~tD~~ELrAL~eLiGPYG~k~l~~~L~~hi~~~v~elk~~v~~N~~~L~~lr~~----~~~~  887 (1128)
T 3p8c_B          813 AFVNLPTENELTFNAEEYSDISEMRSLSELLGPYGMKFLSESLMWHISSQVAELKKLVVENVDVLTQMRTS----FDKP  887 (1128)
T ss_dssp             EEEECSSSCCCCSCTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHC----TTCH
T ss_pred             HhhcCCCCCCCCcCHHhcCCHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh----cCCH
Confidence            999999999999999999999999999999999999999999999    8999999999999987765553    5666

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=8.1e-33  Score=279.60  Aligned_cols=166  Identities=41%  Similarity=0.665  Sum_probs=141.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      ..+||+|||++|||||||++||+++.|...+.||+|.++..+.+.+++..+.++||||+|+++|..++..|++++|++|+
T Consensus        12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il   91 (216)
T 4dkx_A           12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV   91 (216)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred             CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      |||++++.||+++..|+..+.....                               +++|++|||||+|+.+        
T Consensus        92 v~di~~~~Sf~~i~~~~~~i~~~~~-------------------------------~~~piilVgNK~Dl~~--------  132 (216)
T 4dkx_A           92 VYDITNVNSFQQTTKWIDDVRTERG-------------------------------SDVIIMLVGNKTDLAD--------  132 (216)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHT-------------------------------TSSEEEEEEECTTCGG--------
T ss_pred             EeecchhHHHHHHHHHHHHHHHhcC-------------------------------CCCeEEEEeeccchHh--------
Confidence            9999999999999999999877542                               5677788888888752        


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L  245 (730)
                                                                .|.|+.++++++|+.+|+.|+||||++|.||+++|+.|
T Consensus       133 ------------------------------------------~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i  170 (216)
T 4dkx_A          133 ------------------------------------------KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV  170 (216)
T ss_dssp             ------------------------------------------GCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             ------------------------------------------cCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHH
Confidence                                                      36899999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy17467        246 AAELMEK  252 (730)
Q Consensus       246 i~~l~e~  252 (730)
                      ++.+...
T Consensus       171 ~~~i~~~  177 (216)
T 4dkx_A          171 AAALPGM  177 (216)
T ss_dssp             HHHC---
T ss_pred             HHHHHhh
Confidence            9887543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.96  E-value=2.1e-31  Score=294.44  Aligned_cols=244  Identities=15%  Similarity=0.045  Sum_probs=187.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCc----------hhhhhhhH
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ----------ERFRSITQ   74 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~----------e~~~sl~~   74 (730)
                      ..+||+++|++|||||||+|+|++..+. ....++++.+.....+.+++.  .+.||||||+          +.|..++.
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~  251 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRA  251 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHHH
Confidence            4689999999999999999999988764 444566666666677788884  5899999998          45554444


Q ss_pred             -hhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCC
Q psy17467         75 -SYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKT  153 (730)
Q Consensus        75 -~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~  153 (730)
                       .+++.||++|+|+|++++.++++. .|+..+..                                  .+.|+++|+||+
T Consensus       252 ~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----------------------------------~~~~iiiv~NK~  296 (436)
T 2hjg_A          252 LKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----------------------------------AGKAVVIVVNKW  296 (436)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----------------------------------TTCEEEEEEECG
T ss_pred             HHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----------------------------------cCCcEEEEEECc
Confidence             478999999999999999998886 46665532                                  467888899999


Q ss_pred             CcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHH-----HHHHHHhcCCeEE
Q psy17467        154 DLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEV-----GEDFAKRHDMYYL  228 (730)
Q Consensus       154 DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee-----~~~lak~lg~~fv  228 (730)
                      |+.+.                                                  +.++.++     .+.++...+++++
T Consensus       297 Dl~~~--------------------------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~  326 (436)
T 2hjg_A          297 DAVDK--------------------------------------------------DESTMKEFEENIRDHFQFLDYAPIL  326 (436)
T ss_dssp             GGSCC--------------------------------------------------CTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             cCCCc--------------------------------------------------chHHHHHHHHHHHHhcccCCCCCEE
Confidence            98631                                                  1111122     2333334578999


Q ss_pred             EEecCCCCChHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHHhhcCCCCc
Q psy17467        229 ETSAKASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNID  308 (730)
Q Consensus       229 EtSAktG~GVeeLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~~k~~p~~~  308 (730)
                      +|||++|.||+++|+.+.+.+..+..+..+...+++...+           ...++||...++..+..|++|....||.|
T Consensus       327 ~~SA~tg~~v~~l~~~i~~~~~~~~~~~~t~~ln~~l~~~-----------~~~~~pp~~~~~~~~i~y~~q~~~~pp~~  395 (436)
T 2hjg_A          327 FMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDA-----------VAMNPTPTHNGSRLKIYYATQVSVKPPSF  395 (436)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHHHHHHH-----------HHHSCCCEETTEECCEEEEEEEETTTTEE
T ss_pred             EEecccCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH-----------HHhCCCCccCCcceeEEeEecCCCCCCEE
Confidence            9999999999999999999887665555555555544444           23456777888899999999999999999


Q ss_pred             eeeeccccccchhhHHHhHhhhhhhhccCCceeEEEeec
Q psy17467        309 IKSVSGISQIRSDIVKSLSLYYYTFVDLLHFKDCVYLSG  347 (730)
Q Consensus       309 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (730)
                      +.+++.++.++.+|.|||+|.+|+.|++.|+|+++.+++
T Consensus       396 ~~~~n~~~~~~~~y~r~l~~~~r~~~~~~g~p~~~~~~~  434 (436)
T 2hjg_A          396 VVFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIFARA  434 (436)
T ss_dssp             EEEESCGGGCCHHHHHHHHHHHHHHHCCTTSCCEEEEEE
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHcCCCceeEEEEEec
Confidence            999999999999999999999999999999999999986

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.96  E-value=3.5e-30  Score=286.23  Aligned_cols=245  Identities=15%  Similarity=0.047  Sum_probs=188.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCC----------chhhhhhh
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNERIKLQIWDTAG----------QERFRSIT   73 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG----------~e~~~sl~   73 (730)
                      +..+||+++|++|||||||+++|++... .....++++.+.....+.+++  ..+.||||||          ++.+..++
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT--EEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC--ceEEEEECCCCCcCcccchHHHHHHHHH
Confidence            3568999999999999999999997653 344456666666666777787  4789999999          67777665


Q ss_pred             H-hhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccC
Q psy17467         74 Q-SYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDK  152 (730)
Q Consensus        74 ~-~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK  152 (730)
                      . .+++.||++|+|+|+++..+.++ ..|+..+..                                  .+.|+++|+||
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~----------------------------------~~~~~ilv~NK  315 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE----------------------------------AGKAVVIVVNK  315 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH----------------------------------TTCEEEEEEEC
T ss_pred             HHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH----------------------------------cCCCEEEEEEC
Confidence            5 47899999999999998654333 334444432                                  45788888899


Q ss_pred             CCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc-----CCeE
Q psy17467        153 TDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH-----DMYY  227 (730)
Q Consensus       153 ~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l-----g~~f  227 (730)
                      +|+.+                                                  .+.++.+++.+.++..     ++++
T Consensus       316 ~Dl~~--------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  345 (456)
T 4dcu_A          316 WDAVD--------------------------------------------------KDESTMKEFEENIRDHFQFLDYAPI  345 (456)
T ss_dssp             GGGSC--------------------------------------------------CCSSHHHHHHHHHHHHCGGGTTSCE
T ss_pred             hhcCC--------------------------------------------------CchHHHHHHHHHHHHhcccCCCCCE
Confidence            99853                                                  1234445555555543     5799


Q ss_pred             EEEecCCCCChHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHHhhcCCCC
Q psy17467        228 LETSAKASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNI  307 (730)
Q Consensus       228 vEtSAktG~GVeeLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~~k~~p~~  307 (730)
                      ++|||++|.||+++|+.+.+.+..+..+..+...+++...+           ...++||...+++.+..|++|.+..||.
T Consensus       346 ~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~t~~ln~~l~~~-----------~~~~~pp~~~~~~~ki~y~~q~~~~pp~  414 (456)
T 4dcu_A          346 LFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDA-----------VAMNPTPTHNGSRLKIYYATQVSVKPPS  414 (456)
T ss_dssp             EECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHHHHHHH-----------HHHSCCCEETTEECCEEEEEEEETTTTE
T ss_pred             EEEcCCCCcCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH-----------HHhCCCCCCCCceeeEEEEecCCCCCCE
Confidence            99999999999999999999887776655555555544443           2345677778888999999999999999


Q ss_pred             ceeeeccccccchhhHHHhHhhhhhhhccCCceeEEEeec
Q psy17467        308 DIKSVSGISQIRSDIVKSLSLYYYTFVDLLHFKDCVYLSG  347 (730)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (730)
                      |+.+++.++.++.+|.|||+|.+|+.|++.|+|+++.+++
T Consensus       415 ~~~~~n~~~~~~~~y~r~l~~~~r~~~~~~g~p~~~~~~~  454 (456)
T 4dcu_A          415 FVVFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIFARA  454 (456)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHHCCTTCCCEEEEEC
T ss_pred             EEEEecCcccCCHHHHHHHHHHHHHhCCCCceeEEEEEec
Confidence            9999999999999999999999999999999999999997

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.96  E-value=3.3e-28  Score=230.35  Aligned_cols=173  Identities=43%  Similarity=0.730  Sum_probs=152.0

Q ss_pred             CCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhcccc
Q psy17467          2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAH   81 (730)
Q Consensus         2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~AD   81 (730)
                      ++++..+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|
T Consensus         4 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   83 (181)
T 3tw8_B            4 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTH   83 (181)
T ss_dssp             --CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCS
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCC
Confidence            46778899999999999999999999999998888899999999999999999999999999999999999999999999


Q ss_pred             EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467         82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV  161 (730)
Q Consensus        82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~  161 (730)
                      ++|+|||++++.+|+.+..|+..+....                                ++.|+++|+||+|+.+    
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--------------------------------~~~p~ilv~nK~Dl~~----  127 (181)
T 3tw8_B           84 GVIVVYDVTSAESFVNVKRWLHEINQNC--------------------------------DDVCRILVGNKNDDPE----  127 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHC--------------------------------TTSEEEEEEECTTCGG----
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEECCCCch----
Confidence            9999999999999999999999986643                                4678888889988753    


Q ss_pred             HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHH
Q psy17467        162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL  241 (730)
Q Consensus       162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeL  241 (730)
                                                                    .+.+..+++..++...++++++|||++|.||+++
T Consensus       128 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  161 (181)
T 3tw8_B          128 ----------------------------------------------RKVVETEDAYKFAGQMGIQLFETSAKENVNVEEM  161 (181)
T ss_dssp             ----------------------------------------------GCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHH
T ss_pred             ----------------------------------------------hcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence                                                          2456778899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy17467        242 FMQIAAELMEKLAEK  256 (730)
Q Consensus       242 Fe~Li~~l~e~~~~~  256 (730)
                      |++|.+.+.+...+.
T Consensus       162 ~~~l~~~~~~~~~~~  176 (181)
T 3tw8_B          162 FNCITELVLRAKKDN  176 (181)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhh
Confidence            999999997766554

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.96  E-value=1.4e-28  Score=235.17  Aligned_cols=174  Identities=44%  Similarity=0.829  Sum_probs=125.3

Q ss_pred             CCCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccc
Q psy17467          1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSA   80 (730)
Q Consensus         1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~A   80 (730)
                      -+++++.+||+|+|++|||||||+++|+++.+...+.|+++.++....+.+++..+.+++|||||++++..++..+++++
T Consensus         2 ~~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   81 (183)
T 2fu5_C            2 AKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   81 (183)
T ss_dssp             -CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTC
T ss_pred             CcccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcC
Confidence            04578899999999999999999999999998888889999888888899999999999999999999999999999999


Q ss_pred             cEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhH
Q psy17467         81 HALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEH  160 (730)
Q Consensus        81 DaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~  160 (730)
                      |++|+|||++++.+|+.+..|+..+....                               .++.|+++|+||+|+.+   
T Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-------------------------------~~~~piilv~nK~Dl~~---  127 (183)
T 2fu5_C           82 MGIMLVYDITNEKSFDNIRNWIRNIEEHA-------------------------------SADVEKMILGNKCDVND---  127 (183)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHS-------------------------------CTTCEEEEEEEC--CCS---
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhc-------------------------------CCCCCEEEEEECccCCc---
Confidence            99999999999999999999999987643                               14677788888888742   


Q ss_pred             HHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHH
Q psy17467        161 VLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEK  240 (730)
Q Consensus       161 ~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVee  240 (730)
                                                                     .+.++.++++++++.+++++++|||++|.||++
T Consensus       128 -----------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  160 (183)
T 2fu5_C          128 -----------------------------------------------KRQVSKERGEKLALDYGIKFMETSAKANINVEN  160 (183)
T ss_dssp             -----------------------------------------------CCCSCHHHHHHHHHHHTCEEEECCC---CCHHH
T ss_pred             -----------------------------------------------cCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence                                                           246778899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy17467        241 LFMQIAAELMEKLAE  255 (730)
Q Consensus       241 LFe~Li~~l~e~~~~  255 (730)
                      +|++|.+.+.++..+
T Consensus       161 l~~~l~~~i~~~~~~  175 (183)
T 2fu5_C          161 AFFTLARDIKAKMDK  175 (183)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999998776554

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.96  E-value=9.5e-28  Score=229.57  Aligned_cols=172  Identities=44%  Similarity=0.803  Sum_probs=153.0

Q ss_pred             CCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhcccc
Q psy17467          2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAH   81 (730)
Q Consensus         2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~AD   81 (730)
                      ++++..+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+|||||++++...+..+++++|
T Consensus         5 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   84 (186)
T 2bme_A            5 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAA   84 (186)
T ss_dssp             CCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCS
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCC
Confidence            35678899999999999999999999999998888899998998899999999999999999999999999999999999


Q ss_pred             EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467         82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV  161 (730)
Q Consensus        82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~  161 (730)
                      ++|+|||++++.+|+.+..|+..+....                               .++.|+++|+||+|+.+    
T Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------------------~~~~piilv~nK~Dl~~----  129 (186)
T 2bme_A           85 GALLVYDITSRETYNALTNWLTDARMLA-------------------------------SQNIVIILCGNKKDLDA----  129 (186)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHS-------------------------------CTTCEEEEEEECGGGGG----
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhc-------------------------------CCCCcEEEEEECccccc----
Confidence            9999999999999999999999886543                               14677888888888842    


Q ss_pred             HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHH
Q psy17467        162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL  241 (730)
Q Consensus       162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeL  241 (730)
                                                                    .+.++.++++++++..++++++|||++|.||+++
T Consensus       130 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  163 (186)
T 2bme_A          130 ----------------------------------------------DREVTFLEASRFAQENELMFLETSALTGENVEEA  163 (186)
T ss_dssp             ----------------------------------------------GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             ----------------------------------------------ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence                                                          2456778899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy17467        242 FMQIAAELMEKLA  254 (730)
Q Consensus       242 Fe~Li~~l~e~~~  254 (730)
                      |+++++.+.+...
T Consensus       164 ~~~l~~~~~~~~~  176 (186)
T 2bme_A          164 FVQCARKILNKIE  176 (186)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999998876543

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.95  E-value=1.6e-27  Score=229.86  Aligned_cols=171  Identities=46%  Similarity=0.856  Sum_probs=152.9

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      +++..+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus        12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   91 (196)
T 3tkl_A           12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   91 (196)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence            45678999999999999999999999999999889999999999999999999999999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +|+|||++++.+|+.+..|+..+.....                               .+.|+++|+||+|+.+     
T Consensus        92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-------------------------------~~~p~ilv~nK~Dl~~-----  135 (196)
T 3tkl_A           92 IIVVYDVTDQESFNNVKQWLQEIDRYAS-------------------------------ENVNKLLVGNKCDLTT-----  135 (196)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSC-------------------------------TTCEEEEEEECTTCTT-----
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcC-------------------------------CCCCEEEEEECccccc-----
Confidence            9999999999999999999999876542                               4677788888888752     


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF  242 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF  242 (730)
                                                                   .+.+..+++++++..+++++++|||++|.||+++|
T Consensus       136 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  170 (196)
T 3tkl_A          136 ---------------------------------------------KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF  170 (196)
T ss_dssp             ---------------------------------------------TCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHH
T ss_pred             ---------------------------------------------ccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Confidence                                                         24677789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy17467        243 MQIAAELMEKLA  254 (730)
Q Consensus       243 e~Li~~l~e~~~  254 (730)
                      ++|++.+.++..
T Consensus       171 ~~l~~~i~~~~~  182 (196)
T 3tkl_A          171 MTMAAEIKKRMG  182 (196)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhc
Confidence            999999866533

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.95  E-value=1.2e-27  Score=232.00  Aligned_cols=171  Identities=45%  Similarity=0.806  Sum_probs=148.2

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      +.++.+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+++|||+|++++..++..+++++|+
T Consensus        17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   96 (191)
T 2a5j_A           17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG   96 (191)
T ss_dssp             TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCE
Confidence            45678999999999999999999999999988888999988988899999999999999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +|+|||++++.+|+.+..|+..+....                               .++.|+++|+||+|+.+     
T Consensus        97 ii~v~d~~~~~s~~~~~~~l~~i~~~~-------------------------------~~~~piilv~nK~Dl~~-----  140 (191)
T 2a5j_A           97 ALLVYDITRRETFNHLTSWLEDARQHS-------------------------------SSNMVIMLIGNKSDLES-----  140 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHS-------------------------------CTTCEEEEEEECTTCGG-----
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhc-------------------------------CCCCCEEEEEECcccCC-----
Confidence            999999999999999999999987643                               24678888888888852     


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF  242 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF  242 (730)
                                                                   .+.+..++++++++..++.+++|||++|.||+++|
T Consensus       141 ---------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  175 (191)
T 2a5j_A          141 ---------------------------------------------RRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF  175 (191)
T ss_dssp             ---------------------------------------------GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred             ---------------------------------------------ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence                                                         24577889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy17467        243 MQIAAELMEKLA  254 (730)
Q Consensus       243 e~Li~~l~e~~~  254 (730)
                      ++|++.+.++..
T Consensus       176 ~~l~~~i~~~~~  187 (191)
T 2a5j_A          176 INTAKEIYRKIQ  187 (191)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999876543

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=1.3e-27  Score=236.62  Aligned_cols=171  Identities=72%  Similarity=1.201  Sum_probs=152.3

Q ss_pred             CCCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccc
Q psy17467          1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSA   80 (730)
Q Consensus         1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~A   80 (730)
                      |+++++.+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+++|||+|++++..++..+++++
T Consensus        20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   99 (201)
T 2ew1_A           20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA   99 (201)
T ss_dssp             --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred             ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcC
Confidence            56788899999999999999999999999999888889999999999999999999999999999999999999999999


Q ss_pred             cEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhH
Q psy17467         81 HALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEH  160 (730)
Q Consensus        81 DaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~  160 (730)
                      |++|+|||++++.+|+.+..|+..+.....                               .+.|+++|+||+|+.+   
T Consensus       100 d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~-------------------------------~~~piilv~NK~Dl~~---  145 (201)
T 2ew1_A          100 NALILTYDITCEESFRCLPEWLREIEQYAS-------------------------------NKVITVLVGNKIDLAE---  145 (201)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSC-------------------------------TTCEEEEEEECGGGGG---
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcC-------------------------------CCCCEEEEEECCCCcc---
Confidence            999999999999999999999999876431                               4567788888888742   


Q ss_pred             HHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHH
Q psy17467        161 VLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEK  240 (730)
Q Consensus       161 ~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVee  240 (730)
                                                                     .+.+..++++++++..+++|++|||++|.||++
T Consensus       146 -----------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  178 (201)
T 2ew1_A          146 -----------------------------------------------RREVSQQRAEEFSEAQDMYYLETSAKESDNVEK  178 (201)
T ss_dssp             -----------------------------------------------GCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred             -----------------------------------------------ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence                                                           245778889999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy17467        241 LFMQIAAELMEK  252 (730)
Q Consensus       241 LFe~Li~~l~e~  252 (730)
                      +|+++++.+.++
T Consensus       179 l~~~l~~~i~~~  190 (201)
T 2ew1_A          179 LFLDLACRLISE  190 (201)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988654

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.95  E-value=1.2e-27  Score=234.23  Aligned_cols=174  Identities=47%  Similarity=0.858  Sum_probs=153.8

Q ss_pred             CC-CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhcc
Q psy17467          1 ME-DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS   79 (730)
Q Consensus         1 m~-~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~   79 (730)
                      |+ ++++.+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+|||||++++..++..++++
T Consensus         1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   80 (206)
T 2bcg_Y            1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG   80 (206)
T ss_dssp             --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT
T ss_pred             CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC
Confidence            65 67889999999999999999999999999988888999999988999999999999999999999999999999999


Q ss_pred             ccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhh
Q psy17467         80 AHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDE  159 (730)
Q Consensus        80 ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e  159 (730)
                      +|++|+|||++++.+|+.+..|+..+....                               .++.|+++|+||+|+.+  
T Consensus        81 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~-------------------------------~~~~piilv~nK~Dl~~--  127 (206)
T 2bcg_Y           81 SHGIIIVYDVTDQESFNGVKMWLQEIDRYA-------------------------------TSTVLKLLVGNKCDLKD--  127 (206)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHS-------------------------------CTTCEEEEEEECTTCTT--
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhc-------------------------------CCCCCEEEEEECCCCcc--
Confidence            999999999999999999999999987643                               14677888888888852  


Q ss_pred             HHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChH
Q psy17467        160 HVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVE  239 (730)
Q Consensus       160 ~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVe  239 (730)
                                                                      .+.+..++++.++...++++++|||++|.||+
T Consensus       128 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  159 (206)
T 2bcg_Y          128 ------------------------------------------------KRVVEYDVAKEFADANKMPFLETSALDSTNVE  159 (206)
T ss_dssp             ------------------------------------------------TCCSCHHHHHHHHHHTTCCEEECCTTTCTTHH
T ss_pred             ------------------------------------------------ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence                                                            24577888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy17467        240 KLFMQIAAELMEKLAE  255 (730)
Q Consensus       240 eLFe~Li~~l~e~~~~  255 (730)
                      ++|++|.+.+.+....
T Consensus       160 ~l~~~l~~~i~~~~~~  175 (206)
T 2bcg_Y          160 DAFLTMARQIKESMSQ  175 (206)
T ss_dssp             HHHHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999998765433

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.95  E-value=2.9e-27  Score=230.55  Aligned_cols=172  Identities=38%  Similarity=0.735  Sum_probs=152.9

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      ++++.+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+|||||.+++..++..+++++|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (203)
T 1zbd_A            4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG   83 (203)
T ss_dssp             SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence            56788999999999999999999999999988888999988988899999999999999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +|+|||++++.+|+.+..|+..+....                               ..+.|+++|+||+|+.+     
T Consensus        84 ii~v~d~~~~~s~~~~~~~~~~i~~~~-------------------------------~~~~piilv~nK~Dl~~-----  127 (203)
T 1zbd_A           84 FILMYDITNEESFNAVQDWSTQIKTYS-------------------------------WDNAQVLLVGNKCDMED-----  127 (203)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHS-------------------------------CSSCEEEEEEECTTCTT-----
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhc-------------------------------CCCCCEEEEEECcccCc-----
Confidence            999999999999999999999986643                               14677888888888742     


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF  242 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF  242 (730)
                                                                   .+.+..++++++++.+++++++|||++|.||+++|
T Consensus       128 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  162 (203)
T 1zbd_A          128 ---------------------------------------------ERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF  162 (203)
T ss_dssp             ---------------------------------------------SCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHH
T ss_pred             ---------------------------------------------ccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHH
Confidence                                                         24577889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy17467        243 MQIAAELMEKLAE  255 (730)
Q Consensus       243 e~Li~~l~e~~~~  255 (730)
                      ++|++.+.++..+
T Consensus       163 ~~l~~~i~~~~~~  175 (203)
T 1zbd_A          163 ERLVDVICEKMSE  175 (203)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999988765433

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.95  E-value=2e-27  Score=224.65  Aligned_cols=167  Identities=40%  Similarity=0.813  Sum_probs=149.3

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      +.+..+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++++...+..+++++|+
T Consensus        11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (179)
T 1z0f_A           11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (179)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence            35678999999999999999999999999988888999988888899999999999999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +|+|||++++.+++.+..|+..+....                               .++.|+++|+||+|+.+     
T Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------------------~~~~piilv~nK~Dl~~-----  134 (179)
T 1z0f_A           91 ALMVYDITRRSTYNHLSSWLTDARNLT-------------------------------NPNTVIILIGNKADLEA-----  134 (179)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHS-------------------------------CTTCEEEEEEECTTCGG-----
T ss_pred             EEEEEeCcCHHHHHHHHHHHHHHHHhc-------------------------------CCCCcEEEEEECccccc-----
Confidence            999999999999999999999987643                               24678888888888852     


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF  242 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF  242 (730)
                                                                   .+.+..++++++++.+++++++|||++|.||+++|
T Consensus       135 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  169 (179)
T 1z0f_A          135 ---------------------------------------------QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF  169 (179)
T ss_dssp             ---------------------------------------------GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             ---------------------------------------------ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence                                                         24567789999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy17467        243 MQIAAELM  250 (730)
Q Consensus       243 e~Li~~l~  250 (730)
                      +++++.+.
T Consensus       170 ~~l~~~i~  177 (179)
T 1z0f_A          170 LEAAKKIY  177 (179)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHh
Confidence            99998774

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.95  E-value=1e-27  Score=225.16  Aligned_cols=166  Identities=34%  Similarity=0.664  Sum_probs=141.1

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI   83 (730)
                      +++.+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+|||||++++..++..+++++|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            56789999999999999999999999999888889999888888899999999999999999999999999999999999


Q ss_pred             EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      |+|||++++.+|+.+..|+..+.....                               ++.|+++|+||+|+.+      
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------------------------~~~piilv~nK~Dl~~------  125 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKNWVKELRKMLG-------------------------------NEICLCIVGNKIDLEK------  125 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHG-------------------------------GGSEEEEEEECGGGGG------
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcC-------------------------------CCCeEEEEEECccccc------
Confidence            999999999999999999999866532                               3567777888888752      


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM  243 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe  243 (730)
                                                                  .+.++.++++++++..++++++|||++|.||+++|+
T Consensus       126 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1z08_A          126 --------------------------------------------ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL  161 (170)
T ss_dssp             --------------------------------------------GCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred             --------------------------------------------ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence                                                        245778899999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy17467        244 QIAAELM  250 (730)
Q Consensus       244 ~Li~~l~  250 (730)
                      ++++.+.
T Consensus       162 ~l~~~~~  168 (170)
T 1z08_A          162 DLCKRMI  168 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998774

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.95  E-value=2.3e-27  Score=229.12  Aligned_cols=169  Identities=40%  Similarity=0.742  Sum_probs=150.7

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      ..++.+||+|+|++|||||||+++|+++.+...+.++.+.++....+..++..+.+.+|||+|++++..++..+++++|+
T Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   97 (189)
T 2gf9_A           18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG   97 (189)
T ss_dssp             TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred             ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence            45678999999999999999999999999988888999988888888889989999999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +|+|||++++.+|+.+..|+..+....                               .++.|+++|+||+|+.+     
T Consensus        98 ii~v~d~~~~~s~~~~~~~~~~i~~~~-------------------------------~~~~piilv~nK~Dl~~-----  141 (189)
T 2gf9_A           98 FLLMYDIANQESFAAVQDWATQIKTYS-------------------------------WDNAQVILVGNKCDLED-----  141 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHS-------------------------------CTTCEEEEEEECTTCGG-----
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhc-------------------------------CCCCCEEEEEECccccc-----
Confidence            999999999999999999999987643                               14678888888888852     


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF  242 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF  242 (730)
                                                                   .+.+..++++++++.+++++++|||++|.||+++|
T Consensus       142 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  176 (189)
T 2gf9_A          142 ---------------------------------------------ERVVPAEDGRRLADDLGFEFFEASAKENINVKQVF  176 (189)
T ss_dssp             ---------------------------------------------GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             ---------------------------------------------ccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence                                                         24567788999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy17467        243 MQIAAELMEK  252 (730)
Q Consensus       243 e~Li~~l~e~  252 (730)
                      ++|++.+.++
T Consensus       177 ~~l~~~i~~~  186 (189)
T 2gf9_A          177 ERLVDVICEK  186 (189)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.95  E-value=2.7e-27  Score=221.41  Aligned_cols=165  Identities=41%  Similarity=0.728  Sum_probs=146.9

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI   83 (730)
                      ....+||+++|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++++...+..+++++|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            34579999999999999999999999999888889999888888999999899999999999999999999999999999


Q ss_pred             EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      |+|||++++.+|+.+..|+..+....                               .++.|+++|+||+|+.+      
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------------------~~~~~iilv~nK~Dl~~------  125 (170)
T 1r2q_A           83 IVVYDITNEESFARAKNWVKELQRQA-------------------------------SPNIVIALSGNKADLAN------  125 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHS-------------------------------CTTCEEEEEEECGGGGG------
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc-------------------------------CCCCcEEEEEECccCcc------
Confidence            99999999999999999999887643                               15677888888888852      


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM  243 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe  243 (730)
                                                                  .+.++.+++++++...++++++|||++|.||+++|+
T Consensus       126 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  161 (170)
T 1r2q_A          126 --------------------------------------------KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFM  161 (170)
T ss_dssp             --------------------------------------------GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             --------------------------------------------ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence                                                        245677889999999999999999999999999999


Q ss_pred             HHHHHH
Q psy17467        244 QIAAEL  249 (730)
Q Consensus       244 ~Li~~l  249 (730)
                      +|.+.+
T Consensus       162 ~i~~~~  167 (170)
T 1r2q_A          162 AIAKKL  167 (170)
T ss_dssp             HHHHTS
T ss_pred             HHHHHH
Confidence            998754

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.95  E-value=1.9e-27  Score=233.30  Aligned_cols=173  Identities=42%  Similarity=0.766  Sum_probs=141.7

Q ss_pred             CCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhcccc
Q psy17467          2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAH   81 (730)
Q Consensus         2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~AD   81 (730)
                      ++++..+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.||||+|++++..++..+++++|
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d   99 (200)
T 2o52_A           20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA   99 (200)
T ss_dssp             --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence            45678899999999999999999999999998888899998898899999999999999999999999999999999999


Q ss_pred             EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467         82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV  161 (730)
Q Consensus        82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~  161 (730)
                      ++|+|||++++.+|+.+..|+..+.....                               ++.|+++|+||+|+.+    
T Consensus       100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------------------------~~~piilv~nK~Dl~~----  144 (200)
T 2o52_A          100 GALLVYDITSRETYNSLAAWLTDARTLAS-------------------------------PNIVVILCGNKKDLDP----  144 (200)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHTC-------------------------------TTCEEEEEEECGGGGG----
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcC-------------------------------CCCcEEEEEECCCccc----
Confidence            99999999999999999999998876431                               4677888888888742    


Q ss_pred             HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHH
Q psy17467        162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL  241 (730)
Q Consensus       162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeL  241 (730)
                                                                    .+.++.+++.++++..++.|++|||++|.||+++
T Consensus       145 ----------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  178 (200)
T 2o52_A          145 ----------------------------------------------EREVTFLEASRFAQENELMFLETSALTGENVEEA  178 (200)
T ss_dssp             ----------------------------------------------GCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHH
T ss_pred             ----------------------------------------------ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence                                                          2456778899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy17467        242 FMQIAAELMEKLAE  255 (730)
Q Consensus       242 Fe~Li~~l~e~~~~  255 (730)
                      |++|++.+.++...
T Consensus       179 ~~~l~~~i~~~~~~  192 (200)
T 2o52_A          179 FLKCARTILNKIDS  192 (200)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999998765443

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.95  E-value=1.5e-27  Score=223.55  Aligned_cols=164  Identities=45%  Similarity=0.816  Sum_probs=139.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      ..+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+|||||++++...+..+++++|++|+
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            56999999999999999999999999988888999988888889999888999999999999999999999999999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      |||++++.+|+.+..|+..+.....                               ++.|+++|+||+|+.         
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~-------------------------------~~~piilv~nK~Dl~---------  121 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHAN-------------------------------DEAQLLLVGNKSDME---------  121 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSC-------------------------------TTCEEEEEEECTTCT---------
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcC-------------------------------CCCcEEEEEECccCC---------
Confidence            9999999999999999999876532                               456777777777762         


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L  245 (730)
                                                                .+.+..++++++++.+++++++|||++|.||+++|+.+
T Consensus       122 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l  159 (170)
T 1g16_A          122 ------------------------------------------TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL  159 (170)
T ss_dssp             ------------------------------------------TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred             ------------------------------------------cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence                                                      24567788999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy17467        246 AAELME  251 (730)
Q Consensus       246 i~~l~e  251 (730)
                      .+.+.+
T Consensus       160 ~~~~~~  165 (170)
T 1g16_A          160 AKLIQE  165 (170)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998854

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.95  E-value=3.1e-27  Score=232.33  Aligned_cols=168  Identities=52%  Similarity=0.887  Sum_probs=141.6

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      ++++.+||+|+|++|||||||+++|+++.+...+.+|++.++....+.+++..+.+++|||+|++++..++..+++++|+
T Consensus        25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  104 (201)
T 2hup_A           25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANG  104 (201)
T ss_dssp             -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSE
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCE
Confidence            45778999999999999999999999999988888999988888999999988999999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +|+|||++++.+|+.+..|+..+....                               .++.|+++|+||+|+.+     
T Consensus       105 iilv~D~~~~~s~~~~~~~~~~i~~~~-------------------------------~~~~piilv~NK~Dl~~-----  148 (201)
T 2hup_A          105 AILAYDITKRSSFLSVPHWIEDVRKYA-------------------------------GSNIVQLLIGNKSDLSE-----  148 (201)
T ss_dssp             EEEEEETTBHHHHHTHHHHHHHHHHHS-------------------------------CTTCEEEEEEECTTCGG-----
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhc-------------------------------CCCCCEEEEEECCcccc-----
Confidence            999999999999999999999987643                               24677888888888852     


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKL  241 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeL  241 (730)
                                                                   .+.++.++++++++..++ .+++|||++|.||+++
T Consensus       149 ---------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  183 (201)
T 2hup_A          149 ---------------------------------------------LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEA  183 (201)
T ss_dssp             ---------------------------------------------GCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHH
T ss_pred             ---------------------------------------------ccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHH
Confidence                                                         246778899999999999 9999999999999999


Q ss_pred             HHHHHHHHHH
Q psy17467        242 FMQIAAELME  251 (730)
Q Consensus       242 Fe~Li~~l~e  251 (730)
                      |++|++.+.+
T Consensus       184 ~~~l~~~i~~  193 (201)
T 2hup_A          184 FLRVATELIM  193 (201)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998854

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.95  E-value=3.9e-27  Score=223.10  Aligned_cols=173  Identities=34%  Similarity=0.633  Sum_probs=146.7

Q ss_pred             CCCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccc
Q psy17467          1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSA   80 (730)
Q Consensus         1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~A   80 (730)
                      |..++..+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+|||||++++..++..+++++
T Consensus         1 m~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   80 (177)
T 1wms_A            1 MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGS   80 (177)
T ss_dssp             -CCCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTC
T ss_pred             CCCccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcC
Confidence            67788899999999999999999999999999888889999889889999999999999999999999999999999999


Q ss_pred             cEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhH
Q psy17467         81 HALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEH  160 (730)
Q Consensus        81 DaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~  160 (730)
                      |++|+|||++++.+++.+..|+..+.....                           .....+.|+++|+||+|+.    
T Consensus        81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---------------------------~~~~~~~p~i~v~nK~Dl~----  129 (177)
T 1wms_A           81 DCCLLTFSVDDSQSFQNLSNWKKEFIYYAD---------------------------VKEPESFPFVILGNKIDIS----  129 (177)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHT---------------------------CSCTTTSCEEEEEECTTCS----
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHHcc---------------------------ccccCCCcEEEEEECCccc----
Confidence            999999999999999999999999876542                           0112456777777777763    


Q ss_pred             HHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH-hcCCeEEEEecCCCCChH
Q psy17467        161 VLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK-RHDMYYLETSAKASDNVE  239 (730)
Q Consensus       161 ~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak-~lg~~fvEtSAktG~GVe  239 (730)
                                                                     .+.+..++++++++ ..++++++|||++|.||+
T Consensus       130 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  162 (177)
T 1wms_A          130 -----------------------------------------------ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVA  162 (177)
T ss_dssp             -----------------------------------------------SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred             -----------------------------------------------ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence                                                           34677888999988 567899999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy17467        240 KLFMQIAAELME  251 (730)
Q Consensus       240 eLFe~Li~~l~e  251 (730)
                      ++|+++++.+.+
T Consensus       163 ~l~~~l~~~~~~  174 (177)
T 1wms_A          163 AAFEEAVRRVLA  174 (177)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999988753

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.95  E-value=5.3e-27  Score=224.16  Aligned_cols=173  Identities=32%  Similarity=0.628  Sum_probs=151.1

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEE-EEEEEeCCe---------EEEEEEEeCCCchhhhhh
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFM-IKTVEINNE---------RIKLQIWDTAGQERFRSI   72 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~-~~~i~vdg~---------~v~LqLwDTpG~e~~~sl   72 (730)
                      +++..+||+|+|++|||||||+++|+++.+...+.++++.++. ...+.+++.         .+.+.+|||||++++...
T Consensus         7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   86 (195)
T 3bc1_A            7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL   86 (195)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred             ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence            5678899999999999999999999999998888899998887 667777765         789999999999999999


Q ss_pred             hHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccC
Q psy17467         73 TQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDK  152 (730)
Q Consensus        73 ~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK  152 (730)
                      +..+++++|++|+|||++++.+++.+..|+..+.....                              .++.|+++|+||
T Consensus        87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------------------------~~~~piilv~nK  136 (195)
T 3bc1_A           87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY------------------------------SENPDIVLCGNK  136 (195)
T ss_dssp             HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS------------------------------SSSCCEEEEEEC
T ss_pred             HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC------------------------------CCCCCEEEEEEC
Confidence            99999999999999999999999999999999876531                              256788888888


Q ss_pred             CCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEec
Q psy17467        153 TDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSA  232 (730)
Q Consensus       153 ~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSA  232 (730)
                      +|+.+                                                  .+.+..+++++++...++++++|||
T Consensus       137 ~Dl~~--------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa  166 (195)
T 3bc1_A          137 SDLED--------------------------------------------------QRAVKEEEARELAEKYGIPYFETSA  166 (195)
T ss_dssp             TTCGG--------------------------------------------------GCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred             ccccc--------------------------------------------------ccccCHHHHHHHHHHcCCCEEEEEC
Confidence            88852                                                  2456778899999999999999999


Q ss_pred             CCCCChHHHHHHHHHHHHHHHHH
Q psy17467        233 KASDNVEKLFMQIAAELMEKLAE  255 (730)
Q Consensus       233 ktG~GVeeLFe~Li~~l~e~~~~  255 (730)
                      ++|.||+++|+.|.+.+.++..+
T Consensus       167 ~~~~~v~~l~~~l~~~~~~~~~~  189 (195)
T 3bc1_A          167 ANGTNISHAIEMLLDLIMKRMER  189 (195)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHhhh
Confidence            99999999999999998765443

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.95  E-value=5e-27  Score=220.05  Aligned_cols=165  Identities=41%  Similarity=0.712  Sum_probs=148.3

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI   83 (730)
                      ++..+||+++|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||.+++...+..+++++|++
T Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   82 (170)
T 1z0j_A            3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   82 (170)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence            45679999999999999999999999999888889999888888999999999999999999999999999999999999


Q ss_pred             EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      |+|||++++.+++.+..|+..+....                               .++.|+++|+||+|+.+      
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~l~~~~-------------------------------~~~~~iilv~nK~Dl~~------  125 (170)
T 1z0j_A           83 IIVYDITKEETFSTLKNWVRELRQHG-------------------------------PPSIVVAIAGNKCDLTD------  125 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHS-------------------------------CTTSEEEEEEECTTCGG------
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhC-------------------------------CCCCcEEEEEECCcccc------
Confidence            99999999999999999999987643                               25678888889998853      


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM  243 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe  243 (730)
                                                                  .+.+..++++.+++..++++++|||++|.||+++|+
T Consensus       126 --------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  161 (170)
T 1z0j_A          126 --------------------------------------------VREVMERDAKDYADSIHAIFVETSAKNAININELFI  161 (170)
T ss_dssp             --------------------------------------------GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred             --------------------------------------------ccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence                                                        145677889999999999999999999999999999


Q ss_pred             HHHHHH
Q psy17467        244 QIAAEL  249 (730)
Q Consensus       244 ~Li~~l  249 (730)
                      .|.+.+
T Consensus       162 ~i~~~i  167 (170)
T 1z0j_A          162 EISRRI  167 (170)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            998765

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.95  E-value=2.5e-27  Score=221.70  Aligned_cols=164  Identities=36%  Similarity=0.675  Sum_probs=147.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      +..+||+++|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+|||||++++..++..+++++|++|
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            46799999999999999999999999998888899998998999999998999999999999999999999999999999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      +|||++++.+++.+..|+..+....                                ++.|+++|+||+|+.+       
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~--------------------------------~~~piilv~nK~Dl~~-------  123 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEV--------------------------------GDIPTALVQNKIDLLD-------  123 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH--------------------------------CSCCEEEEEECGGGGG-------
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEECcccCc-------
Confidence            9999999999999999999886643                                4567888888888752       


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~  244 (730)
                                                                 .+.+..++++++++..++++++|||++|.||+++|++
T Consensus       124 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  160 (168)
T 1z2a_A          124 -------------------------------------------DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY  160 (168)
T ss_dssp             -------------------------------------------GCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred             -------------------------------------------ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence                                                       2456778899999999999999999999999999999


Q ss_pred             HHHHHH
Q psy17467        245 IAAELM  250 (730)
Q Consensus       245 Li~~l~  250 (730)
                      |.+.+.
T Consensus       161 l~~~~~  166 (168)
T 1z2a_A          161 LAEKHL  166 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998774

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=3.4e-27  Score=224.11  Aligned_cols=170  Identities=46%  Similarity=0.795  Sum_probs=141.4

Q ss_pred             CCCcceeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccc
Q psy17467          2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSA   80 (730)
Q Consensus         2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~A   80 (730)
                      +.++..+||+++|++|||||||+++|+++.+. ..+.++++.++....+.+++..+.+.+|||||++++..++..+++++
T Consensus         5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~   84 (180)
T 2g6b_A            5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA   84 (180)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred             ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence            35677899999999999999999999999885 46778999888888888999999999999999999999999999999


Q ss_pred             cEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhH
Q psy17467         81 HALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEH  160 (730)
Q Consensus        81 DaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~  160 (730)
                      |++|+|||++++.+++.+..|+..+.....                               .+.|+++|+||+|+.+   
T Consensus        85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-------------------------------~~~piilv~nK~Dl~~---  130 (180)
T 2g6b_A           85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQ-------------------------------HDVALMLLGNKVDSAH---  130 (180)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSC-------------------------------TTCEEEEEEECCSTTS---
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhCC-------------------------------CCCcEEEEEECcccCc---
Confidence            999999999999999999999999876431                               4677888888888752   


Q ss_pred             HHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHH
Q psy17467        161 VLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEK  240 (730)
Q Consensus       161 ~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVee  240 (730)
                                                                     .+.+..++++++++..++++++|||++|.||++
T Consensus       131 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  163 (180)
T 2g6b_A          131 -----------------------------------------------ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDL  163 (180)
T ss_dssp             -----------------------------------------------CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred             -----------------------------------------------ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence                                                           245777889999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy17467        241 LFMQIAAELMEK  252 (730)
Q Consensus       241 LFe~Li~~l~e~  252 (730)
                      +|+++.+.+.++
T Consensus       164 l~~~l~~~~~~~  175 (180)
T 2g6b_A          164 AFTAIAKELKRR  175 (180)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHH
Confidence            999999888543

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.95  E-value=2.4e-27  Score=235.97  Aligned_cols=177  Identities=29%  Similarity=0.476  Sum_probs=148.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      ...+||+|+|++|||||||+++|+++.+...+.||++.++ ...+.+++..+.++||||+|++++..++..+++++|++|
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  103 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL  103 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence            3569999999999999999999999999998889998665 567778888899999999999999999999999999999


Q ss_pred             EEeecCCCCchhh-hHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         85 LVYDISCQPTFDC-LTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        85 LVyDvtd~eSfe~-L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      +|||++++.||+. +..|+..+....                                ++.|+++||||+|+.++.....
T Consensus       104 ~v~d~~~~~s~~~~~~~~~~~i~~~~--------------------------------~~~piilv~nK~Dl~~~~~~~~  151 (214)
T 3q3j_B          104 LCFDISRPETVDSALKKWRTEILDYC--------------------------------PSTRVLLIGCKTDLRTDLSTLM  151 (214)
T ss_dssp             EEEETTCTHHHHHHHTHHHHHHHHHC--------------------------------TTSEEEEEEECGGGGGCHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEEChhhccchhhhh
Confidence            9999999999998 688999987643                                5788999999999975422110


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCC-hHHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDN-VEKL  241 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~G-VeeL  241 (730)
                                                            ...+...+.++.+++.++++.+++ .|+||||++|.| |+++
T Consensus       152 --------------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~l  193 (214)
T 3q3j_B          152 --------------------------------------ELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSI  193 (214)
T ss_dssp             --------------------------------------HHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHH
T ss_pred             --------------------------------------hhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHH
Confidence                                                  001113467899999999999999 999999999998 9999


Q ss_pred             HHHHHHHHHHH
Q psy17467        242 FMQIAAELMEK  252 (730)
Q Consensus       242 Fe~Li~~l~e~  252 (730)
                      |+.+++.+.+.
T Consensus       194 f~~l~~~~~~~  204 (214)
T 3q3j_B          194 FRTASMLCLNK  204 (214)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHhcc
Confidence            99999988544

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.95  E-value=1.8e-27  Score=227.14  Aligned_cols=167  Identities=27%  Similarity=0.421  Sum_probs=146.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      ...+||+++|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+++|||||++++..++..+++++|++|
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            3469999999999999999999999999888889998666 778889999999999999999999999999999999999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      +|||++++.+|+.+..|+.++....                              ..++.|+++|+||+|+.+       
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~p~ilv~nK~Dl~~-------  125 (181)
T 3t5g_A           83 LVYSVTSIKSFEVIKVIHGKLLDMV------------------------------GKVQIPIMLVGNKKDLHM-------  125 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC----------------------------------CCEEEEEECTTCTT-------
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEEECccchh-------
Confidence            9999999999999999999986643                              124678888888888742       


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~  244 (730)
                                                                 .+.++.++++++++.++++|++|||++|.||+++|+.
T Consensus       126 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  162 (181)
T 3t5g_A          126 -------------------------------------------ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  162 (181)
T ss_dssp             -------------------------------------------TCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred             -------------------------------------------cceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence                                                       3568889999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy17467        245 IAAELMEK  252 (730)
Q Consensus       245 Li~~l~e~  252 (730)
                      +++.+.+.
T Consensus       163 l~~~~~~~  170 (181)
T 3t5g_A          163 IILEAEKM  170 (181)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHHh
Confidence            99988543

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.95  E-value=5.2e-27  Score=224.30  Aligned_cols=167  Identities=29%  Similarity=0.509  Sum_probs=148.0

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI   83 (730)
                      ....+||+|+|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+++|||+|++++..++..+++++|++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   93 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF   93 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            34679999999999999999999999999888889988666 77888899999999999999999999999999999999


Q ss_pred             EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      |+|||++++.||+.+..|+..+....                              ...+.|+++|+||+|+.+      
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~p~ilv~nK~Dl~~------  137 (183)
T 3kkq_A           94 LIVYSVTDKASFEHVDRFHQLILRVK------------------------------DRESFPMILVANKVDLMH------  137 (183)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHH------------------------------TSSCCCEEEEEECTTCST------
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCcEEEEEECCCchh------
Confidence            99999999999999999999986643                              125678888888888752      


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecC-CCCChHHHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAK-ASDNVEKLF  242 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAk-tG~GVeeLF  242 (730)
                                                                  .+.++.++++++++.++++|++|||+ +|.||+++|
T Consensus       138 --------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~  173 (183)
T 3kkq_A          138 --------------------------------------------LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF  173 (183)
T ss_dssp             --------------------------------------------TCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHH
T ss_pred             --------------------------------------------ccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHH
Confidence                                                        35688899999999999999999999 999999999


Q ss_pred             HHHHHHHHH
Q psy17467        243 MQIAAELME  251 (730)
Q Consensus       243 e~Li~~l~e  251 (730)
                      +.|++.+.+
T Consensus       174 ~~l~~~i~~  182 (183)
T 3kkq_A          174 HDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999988753

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=4.1e-28  Score=235.17  Aligned_cols=169  Identities=38%  Similarity=0.755  Sum_probs=151.7

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      ++++.+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.||||+|++.+..++..+++++|+
T Consensus        19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   98 (191)
T 3dz8_A           19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG   98 (191)
T ss_dssp             EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred             ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence            46788999999999999999999999999988888899888988899888888999999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +|+|||++++.+|+.+..|+..+....                               .++.|+++|+||+|+.+     
T Consensus        99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-------------------------------~~~~piilv~nK~Dl~~-----  142 (191)
T 3dz8_A           99 FILMYDITNEESFNAVQDWATQIKTYS-------------------------------WDNAQVILVGNKCDMEE-----  142 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHS-------------------------------CTTCEEEEEEECTTCGG-----
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhc-------------------------------CCCCCEEEEEECCCCcc-----
Confidence            999999999999999999999987643                               14677888888888852     


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF  242 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF  242 (730)
                                                                   .+.+..++++.+++.+++++++|||++|.||+++|
T Consensus       143 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  177 (191)
T 3dz8_A          143 ---------------------------------------------ERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF  177 (191)
T ss_dssp             ---------------------------------------------GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             ---------------------------------------------ccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence                                                         24677889999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy17467        243 MQIAAELMEK  252 (730)
Q Consensus       243 e~Li~~l~e~  252 (730)
                      +.|++.+.++
T Consensus       178 ~~l~~~i~~~  187 (191)
T 3dz8_A          178 ERLVDAICDK  187 (191)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999988654

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.95  E-value=2.5e-27  Score=222.80  Aligned_cols=165  Identities=23%  Similarity=0.342  Sum_probs=130.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh-hhHhhhccccEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS-ITQSYYRSAHALIL   85 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s-l~~~~~r~ADaIIL   85 (730)
                      .+||+++|++|||||||+++|++..+...+.++.+.+.....+.+++..+.+.+|||+|++++.. ++..+++++|++|+
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            58999999999999999999998887777667777788888999999999999999999998876 77888999999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      |||++++++|+.+..|+.++.....                              ..+.|+++|+||+|+.+        
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~------------------------------~~~~p~ilv~nK~Dl~~--------  123 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRP------------------------------HHDLPVILVGNKSDLAR--------  123 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHST------------------------------TSCCCEEEEEECTTCGG--------
T ss_pred             EEECCChHHHHHHHHHHHHHHhccc------------------------------CCCCCEEEEeeCcchhh--------
Confidence            9999999999999999999876531                              24678888888888852        


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L  245 (730)
                                                                .+.++.++++++++..+++|++|||++|.||+++|+.+
T Consensus       124 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A          124 ------------------------------------------SREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             ------------------------------------------GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             ------------------------------------------cccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence                                                      25678899999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy17467        246 AAELME  251 (730)
Q Consensus       246 i~~l~e  251 (730)
                      ++.+..
T Consensus       162 ~~~i~~  167 (169)
T 3q85_A          162 VRQIRL  167 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998754

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.95  E-value=2.9e-27  Score=223.13  Aligned_cols=167  Identities=27%  Similarity=0.381  Sum_probs=133.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh--hhhhhHhhhccccE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER--FRSITQSYYRSAHA   82 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~--~~sl~~~~~r~ADa   82 (730)
                      +..+||+|+|++|||||||+++|+++.+...+ ++.|.++....+.+++..+.+.+|||+|++.  +..+...+++.+|+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            35689999999999999999999998876654 5677788888889999999999999999987  56677888999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +|+|||++++.+|+.+..|+..+....                              ..++.|+++|+||+|+.+     
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~------------------------------~~~~~piilv~NK~Dl~~-----  125 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTH------------------------------QADHVPIILVGNKADLAR-----  125 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----------------------------------CCEEEEEECTTCTT-----
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhh------------------------------ccCCCCEEEEEEChhhcc-----
Confidence            999999999999999999998876532                              124678888888888852     


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF  242 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF  242 (730)
                                                                   .+.++.++++.++..+++++++|||++|.||+++|
T Consensus       126 ---------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (175)
T 2nzj_A          126 ---------------------------------------------CREVSVEEGRACAVVFDCKFIETSATLQHNVAELF  160 (175)
T ss_dssp             ---------------------------------------------TCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred             ---------------------------------------------ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence                                                         24577788899999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy17467        243 MQIAAELMEK  252 (730)
Q Consensus       243 e~Li~~l~e~  252 (730)
                      ++|++.+.+.
T Consensus       161 ~~l~~~~~~~  170 (175)
T 2nzj_A          161 EGVVRQLRLR  170 (175)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999988554

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.95  E-value=1.5e-27  Score=234.06  Aligned_cols=167  Identities=23%  Similarity=0.329  Sum_probs=142.0

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh-hhHhhhccccE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS-ITQSYYRSAHA   82 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s-l~~~~~r~ADa   82 (730)
                      .+..+||+|+|++|||||||+++|++..+...+.|+.+.+.....+.+++..+.+.+|||+|++.+.. ++..+++++|+
T Consensus        20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~   99 (195)
T 3cbq_A           20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA   99 (195)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence            45679999999999999999999986655545556777778888889999999999999999987765 78889999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +|+|||++++.||+.+..|+.++....                              ...+.|+++||||+|+.+     
T Consensus       100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~piilv~nK~Dl~~-----  144 (195)
T 3cbq_A          100 FLIVFSVTDRRSFSKVPETLLRLRAGR------------------------------PHHDLPVILVGNKSDLAR-----  144 (195)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHS------------------------------TTSCCCEEEEEECTTCTT-----
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEeechhccc-----
Confidence            999999999999999999999886543                              114678888888888752     


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF  242 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF  242 (730)
                                                                   .+.++.++++++++.+++.|+||||++|.||+++|
T Consensus       145 ---------------------------------------------~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf  179 (195)
T 3cbq_A          145 ---------------------------------------------SREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF  179 (195)
T ss_dssp             ---------------------------------------------TCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHH
T ss_pred             ---------------------------------------------cCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHH
Confidence                                                         25678889999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy17467        243 MQIAAELM  250 (730)
Q Consensus       243 e~Li~~l~  250 (730)
                      +.+++.+.
T Consensus       180 ~~l~~~i~  187 (195)
T 3cbq_A          180 EGAVRQIR  187 (195)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998874

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.95  E-value=3.8e-27  Score=228.51  Aligned_cols=168  Identities=29%  Similarity=0.555  Sum_probs=145.7

Q ss_pred             CCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhcccc
Q psy17467          2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAH   81 (730)
Q Consensus         2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~AD   81 (730)
                      +.....+||+++|++|||||||+++|+++.+...+.+|++.++ ...+.+++..+.+++|||+|++++..++..+++++|
T Consensus        18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   96 (194)
T 3reg_A           18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSD   96 (194)
T ss_dssp             ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeee-EEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence            4556789999999999999999999999999888889998655 457788999999999999999999999999999999


Q ss_pred             EEEEEeecCCCCchhhh-HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhH
Q psy17467         82 ALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEH  160 (730)
Q Consensus        82 aIILVyDvtd~eSfe~L-~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~  160 (730)
                      ++|+|||++++.+|+.+ ..|+..+....                                ++.|+++||||+|+.+.  
T Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------------------------------~~~p~ilv~nK~Dl~~~--  142 (194)
T 3reg_A           97 VVLLCFAVNNRTSFDNISTKWEPEIKHYI--------------------------------DTAKTVLVGLKVDLRKD--  142 (194)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHC--------------------------------TTSEEEEEEECGGGCCT--
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEEChhhccC--
Confidence            99999999999999997 66888876542                                46788888899888531  


Q ss_pred             HHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCe-EEEEecCCCCChH
Q psy17467        161 VLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMY-YLETSAKASDNVE  239 (730)
Q Consensus       161 ~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~-fvEtSAktG~GVe  239 (730)
                                                                    ..+.+..++++++++.+++. |++|||++|.||+
T Consensus       143 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  176 (194)
T 3reg_A          143 ----------------------------------------------GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN  176 (194)
T ss_dssp             ----------------------------------------------TTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHH
T ss_pred             ----------------------------------------------CCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHH
Confidence                                                          13568889999999999998 9999999999999


Q ss_pred             HHHHHHHHHHH
Q psy17467        240 KLFMQIAAELM  250 (730)
Q Consensus       240 eLFe~Li~~l~  250 (730)
                      ++|+.+++.+.
T Consensus       177 ~l~~~l~~~i~  187 (194)
T 3reg_A          177 EVFEKSVDCIF  187 (194)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998874

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.95  E-value=6.2e-27  Score=221.58  Aligned_cols=169  Identities=29%  Similarity=0.482  Sum_probs=147.0

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      .....+||+|+|++|||||||+++|+++.+...+.++++..+. ..+.+++..+.+.+|||||++++..++..+++++|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   83 (181)
T 2fn4_A            5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   83 (181)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence            4456799999999999999999999999998888888886654 778889988999999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +|+|||++++.+|+.+..|+..+.+..                              ...+.|+++|+||+|+.+     
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilv~nK~Dl~~-----  128 (181)
T 2fn4_A           84 FLLVFAINDRQSFNEVGKLFTQILRVK------------------------------DRDDFPVVLVGNKADLES-----  128 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHH------------------------------TSSCCCEEEEEECGGGGG-----
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEEECccccc-----
Confidence            999999999999999999999885543                              124678888888888752     


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF  242 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF  242 (730)
                                                                   .+.++.++++.++...++.+++|||++|.||+++|
T Consensus       129 ---------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  163 (181)
T 2fn4_A          129 ---------------------------------------------QRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  163 (181)
T ss_dssp             ---------------------------------------------GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             ---------------------------------------------ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence                                                         24577888999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy17467        243 MQIAAELMEK  252 (730)
Q Consensus       243 e~Li~~l~e~  252 (730)
                      ++|.+.+.+.
T Consensus       164 ~~l~~~~~~~  173 (181)
T 2fn4_A          164 EQLVRAVRKY  173 (181)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999988543

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.95  E-value=5.6e-27  Score=222.80  Aligned_cols=166  Identities=38%  Similarity=0.712  Sum_probs=148.1

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI   83 (730)
                      ....+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+|||||++++...+..+++++|++
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   88 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   88 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence            45679999999999999999999999999888889999889888999999899999999999999999999999999999


Q ss_pred             EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      |+|||++++.+|+.+..|+..+....                               .++.|+++|+||+|+.+      
T Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------------------~~~~p~i~v~nK~Dl~~------  131 (181)
T 2efe_B           89 IIVFDVTNQASFERAKKWVQELQAQG-------------------------------NPNMVMALAGNKSDLLD------  131 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHS-------------------------------CTTCEEEEEEECTTCTT------
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc-------------------------------CCCCcEEEEEECCcccc------
Confidence            99999999999999999999987653                               14677888888888842      


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM  243 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe  243 (730)
                                                                  .+.+..++++++++..++++++|||++|.||+++|+
T Consensus       132 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  167 (181)
T 2efe_B          132 --------------------------------------------ARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY  167 (181)
T ss_dssp             --------------------------------------------TCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHH
T ss_pred             --------------------------------------------cccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence                                                        245678899999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy17467        244 QIAAELM  250 (730)
Q Consensus       244 ~Li~~l~  250 (730)
                      +|++.+.
T Consensus       168 ~l~~~~~  174 (181)
T 2efe_B          168 EIARRLP  174 (181)
T ss_dssp             HHHHTCC
T ss_pred             HHHHHHH
Confidence            9988764

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.95  E-value=1.1e-26  Score=224.66  Aligned_cols=170  Identities=44%  Similarity=0.769  Sum_probs=151.3

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      +++..+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+|||+|.+++..++..+++++|+
T Consensus        21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~  100 (193)
T 2oil_A           21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVG  100 (193)
T ss_dssp             CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence            56778999999999999999999999999988888999988988899999999999999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +|+|||++++.+|+.+..|+..+....                               ..+.|+++|+||+|+.+     
T Consensus       101 vi~v~D~~~~~s~~~~~~~l~~i~~~~-------------------------------~~~~piilv~nK~Dl~~-----  144 (193)
T 2oil_A          101 ALLVFDLTKHQTYAVVERWLKELYDHA-------------------------------EATIVVMLVGNKSDLSQ-----  144 (193)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHTTS-------------------------------CTTCEEEEEEECGGGGG-----
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhc-------------------------------CCCCeEEEEEECCCccc-----
Confidence            999999999999999999998886432                               25678888888888852     


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF  242 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF  242 (730)
                                                                   .+.+..++++.++...++.+++|||++|.||+++|
T Consensus       145 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  179 (193)
T 2oil_A          145 ---------------------------------------------AREVPTEEARMFAENNGLLFLETSALDSTNVELAF  179 (193)
T ss_dssp             ---------------------------------------------GCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred             ---------------------------------------------ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence                                                         14567788999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy17467        243 MQIAAELMEKL  253 (730)
Q Consensus       243 e~Li~~l~e~~  253 (730)
                      ++|++.+.++.
T Consensus       180 ~~l~~~i~~~~  190 (193)
T 2oil_A          180 ETVLKEIFAKV  190 (193)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999887654

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.95  E-value=6.2e-27  Score=221.20  Aligned_cols=164  Identities=41%  Similarity=0.690  Sum_probs=146.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      ...+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+|||||++++...+..+++++|++|
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   91 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV   91 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            35689999999999999999999999998888899998999999999999999999999999999999999999999999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      +|||++++.+|+.+..|+..+.....                               .+.|+++|+||+|+.+       
T Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~-------------------------------~~~piilv~nK~Dl~~-------  133 (179)
T 2y8e_A           92 VVYDITNTNSFHQTSKWIDDVRTERG-------------------------------SDVIIMLVGNKTDLSD-------  133 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHT-------------------------------TSSEEEEEEECGGGGG-------
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC-------------------------------CCCcEEEEEECCcccc-------
Confidence            99999999999999999999876532                               4577788888888752       


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~  244 (730)
                                                                 .+.+..++++.+++..++++++|||++|.||+++|+.
T Consensus       134 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  170 (179)
T 2y8e_A          134 -------------------------------------------KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR  170 (179)
T ss_dssp             -------------------------------------------GCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred             -------------------------------------------cCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence                                                       2456778899999999999999999999999999999


Q ss_pred             HHHHH
Q psy17467        245 IAAEL  249 (730)
Q Consensus       245 Li~~l  249 (730)
                      |.+.+
T Consensus       171 l~~~~  175 (179)
T 2y8e_A          171 VAAAL  175 (179)
T ss_dssp             HHHTC
T ss_pred             HHHHH
Confidence            98765

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.95  E-value=4.1e-27  Score=223.04  Aligned_cols=174  Identities=32%  Similarity=0.588  Sum_probs=136.1

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeC-CeEEEEEEEeCCCchhhhhhhHhhhcccc
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN-NERIKLQIWDTAGQERFRSITQSYYRSAH   81 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vd-g~~v~LqLwDTpG~e~~~sl~~~~~r~AD   81 (730)
                      .++..+||+|+|++|||||||+++|+++.+...+.++++.++....+.++ +..+.+.+|||||++.+...+..+++++|
T Consensus         4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (182)
T 1ky3_A            4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD   83 (182)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred             ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence            45678999999999999999999999999988888999888888888887 66789999999999999999999999999


Q ss_pred             EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467         82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV  161 (730)
Q Consensus        82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~  161 (730)
                      ++|+|||++++.+|+.+..|+..+.....                           .....+.|+++|+||+|+.+    
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---------------------------~~~~~~~p~ilv~nK~Dl~~----  132 (182)
T 1ky3_A           84 CCVLVYDVTNASSFENIKSWRDEFLVHAN---------------------------VNSPETFPFVILGNKIDAEE----  132 (182)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHC---------------------------CSCTTTCCEEEEEECTTSCG----
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHHhc---------------------------ccCcCCCcEEEEEECCcccc----
Confidence            99999999999999999999999876541                           11225678888899999853    


Q ss_pred             HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH-hcCCeEEEEecCCCCChHH
Q psy17467        162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK-RHDMYYLETSAKASDNVEK  240 (730)
Q Consensus       162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak-~lg~~fvEtSAktG~GVee  240 (730)
                                                                   ..+.+..++++++++ ..++++++|||++|.||++
T Consensus       133 ---------------------------------------------~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  167 (182)
T 1ky3_A          133 ---------------------------------------------SKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  167 (182)
T ss_dssp             ---------------------------------------------GGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             ---------------------------------------------ccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHH
Confidence                                                         124567788899988 5678999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy17467        241 LFMQIAAELMEK  252 (730)
Q Consensus       241 LFe~Li~~l~e~  252 (730)
                      +|++|.+.+.++
T Consensus       168 l~~~l~~~~~~~  179 (182)
T 1ky3_A          168 AFEEIARSALQQ  179 (182)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988654

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.95  E-value=4.9e-27  Score=226.32  Aligned_cols=176  Identities=28%  Similarity=0.512  Sum_probs=146.6

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI   83 (730)
                      .+..+||+|+|++|||||||+++|+++.+...+.|+++..+ ...+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            45679999999999999999999999999888889988555 56678888889999999999999999999999999999


Q ss_pred             EEEeecCCCCchhhh-HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         84 ILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        84 ILVyDvtd~eSfe~L-~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      |+|||++++.||+.+ ..|+..+....                                ++.|+++||||+|+.++....
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~--------------------------------~~~piilv~nK~Dl~~~~~~~  130 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFC--------------------------------PNTKMLLVGCKSDLRTDVSTL  130 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC--------------------------------TTCEEEEEEECGGGGGCHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC--------------------------------CCCCEEEEEEcchhhcchhhH
Confidence            999999999999998 67988886542                                568899999999997532211


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC-CeEEEEecC-CCCChHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYLETSAK-ASDNVEK  240 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg-~~fvEtSAk-tG~GVee  240 (730)
                      ..+                                      .+...+.++.++++++++.++ ++|++|||+ +|.||++
T Consensus       131 ~~~--------------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~  172 (184)
T 1m7b_A          131 VEL--------------------------------------SNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRD  172 (184)
T ss_dssp             HHH--------------------------------------HTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHH
T ss_pred             hhh--------------------------------------hhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHH
Confidence            000                                      011236788899999999988 699999999 6899999


Q ss_pred             HHHHHHHHHH
Q psy17467        241 LFMQIAAELM  250 (730)
Q Consensus       241 LFe~Li~~l~  250 (730)
                      +|+.+++.++
T Consensus       173 l~~~i~~~~l  182 (184)
T 1m7b_A          173 IFHVATLACV  182 (184)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998875

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.95  E-value=1.1e-26  Score=225.99  Aligned_cols=179  Identities=26%  Similarity=0.415  Sum_probs=141.8

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI   83 (730)
                      ....+||+|+|++|||||||+++|+++.+...+.||++. .....+.+++..+.+++|||+|++++..++..+++++|++
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   95 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFD-NFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF   95 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSE-EEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccc-eeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence            456799999999999999999999999988888888874 4466788899889999999999999999999999999999


Q ss_pred             EEEeecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         84 ILVYDISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        84 ILVyDvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      |+|||++++.+|+.+. .|+..+....                                ++.|+++|+||+|+.+.....
T Consensus        96 i~v~d~~~~~s~~~~~~~~~~~~~~~~--------------------------------~~~p~ilv~nK~Dl~~~~~~~  143 (201)
T 2q3h_A           96 LLCFSVVSPSSFQNVSEKWVPEIRCHC--------------------------------PKAPIILVGTQSDLREDVKVL  143 (201)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC--------------------------------SSSCEEEEEECGGGGGCHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEECHhhhhchhhh
Confidence            9999999999999997 6998886543                                478899999999997532211


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKL  241 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeL  241 (730)
                      ..+                                    +  +...+.++.+++..+++.+++ +|++|||++|.||+++
T Consensus       144 ~~~------------------------------------~--~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  185 (201)
T 2q3h_A          144 IEL------------------------------------D--KCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEV  185 (201)
T ss_dssp             HHH------------------------------------H--TTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHH
T ss_pred             hhh------------------------------------c--ccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHH
Confidence            000                                    0  012367888999999999998 9999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy17467        242 FMQIAAELMEKL  253 (730)
Q Consensus       242 Fe~Li~~l~e~~  253 (730)
                      |+++++.+.+..
T Consensus       186 ~~~l~~~~~~~~  197 (201)
T 2q3h_A          186 FDAAIVAGIQYS  197 (201)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhccc
Confidence            999999887654

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.95  E-value=5.8e-27  Score=227.46  Aligned_cols=166  Identities=21%  Similarity=0.387  Sum_probs=139.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      ...+||+|+|++|||||||+++|+++.+...+.+|++.++ ...+.+++..+.+++|||+|++++..+ ..+++++|++|
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i   96 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL   96 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence            4579999999999999999999999999888889998555 566778999999999999999988775 67999999999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      +|||++++.||+.+..|+..+......                            ..++.|+++||||+|+.+       
T Consensus        97 lv~d~~~~~s~~~~~~~~~~i~~~~~~----------------------------~~~~~piilv~nK~Dl~~-------  141 (187)
T 3c5c_A           97 VVYSVDSRQSFDSSSSYLELLALHAKE----------------------------TQRSIPALLLGNKLDMAQ-------  141 (187)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHHH----------------------------HCCCCCEEEEEECGGGGG-------
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhhc----------------------------cCCCCCEEEEEECcchhh-------
Confidence            999999999999999999998765310                            114677888888888742       


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEec-CCCCChHHHHH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSA-KASDNVEKLFM  243 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSA-ktG~GVeeLFe  243 (730)
                                                                 .+.++.++++++++.+++.|++||| ++|.||+++|+
T Consensus       142 -------------------------------------------~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~  178 (187)
T 3c5c_A          142 -------------------------------------------YRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFH  178 (187)
T ss_dssp             -------------------------------------------GCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHH
T ss_pred             -------------------------------------------cCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHH
Confidence                                                       2567889999999999999999999 89999999999


Q ss_pred             HHHHHHH
Q psy17467        244 QIAAELM  250 (730)
Q Consensus       244 ~Li~~l~  250 (730)
                      .|++.+.
T Consensus       179 ~l~~~i~  185 (187)
T 3c5c_A          179 EAVREAR  185 (187)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998774

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.95  E-value=1.2e-26  Score=224.19  Aligned_cols=167  Identities=44%  Similarity=0.812  Sum_probs=145.2

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh-hhhHhhhccccE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR-SITQSYYRSAHA   82 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~-sl~~~~~r~ADa   82 (730)
                      .+..+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+|||+|++++. .++..+++++|+
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~   96 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA   96 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence            3457999999999999999999999999988888999989989999999989999999999999998 889999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +|+|||++++.||+.+..|+.++....                              ...+.|+++|+||+|+.+     
T Consensus        97 iilv~D~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~piilv~nK~Dl~~-----  141 (189)
T 1z06_A           97 VVFVYDMTNMASFHSLPAWIEECKQHL------------------------------LANDIPRILVGNKCDLRS-----  141 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHC------------------------------CCSCCCEEEEEECTTCGG-----
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEEECccccc-----
Confidence            999999999999999999999987653                              125678888888888852     


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCC---CChH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKAS---DNVE  239 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG---~GVe  239 (730)
                                                                   .+.++.++++++++..+++|++|||++|   .||+
T Consensus       142 ---------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~  176 (189)
T 1z06_A          142 ---------------------------------------------AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE  176 (189)
T ss_dssp             ---------------------------------------------GCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHH
T ss_pred             ---------------------------------------------cceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHH
Confidence                                                         2457788899999999999999999999   9999


Q ss_pred             HHHHHHHHHHH
Q psy17467        240 KLFMQIAAELM  250 (730)
Q Consensus       240 eLFe~Li~~l~  250 (730)
                      ++|++|++.+.
T Consensus       177 ~l~~~l~~~i~  187 (189)
T 1z06_A          177 AIFMTLAHKLK  187 (189)
T ss_dssp             HHHHHHC----
T ss_pred             HHHHHHHHHHh
Confidence            99999988763

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.95  E-value=1.7e-26  Score=215.99  Aligned_cols=165  Identities=38%  Similarity=0.695  Sum_probs=147.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||+++|++|||||||+++|+++.+...+.|+.+.++....+.+++..+.+.+|||||++++...+..+++++|++|+|
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence            58999999999999999999999999888889999888888999999999999999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||++++.+++.+..|+..+....                               .++.|+++|+||+|+.+..       
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~-------------------------------~~~~piilv~nK~Dl~~~~-------  124 (170)
T 1ek0_A           83 YDVTKPQSFIKARHWVKELHEQA-------------------------------SKDIIIALVGNKIDXLQEG-------  124 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHS-------------------------------CTTCEEEEEEECGGGGGSS-------
T ss_pred             EecCChHHHHHHHHHHHHHHHhc-------------------------------CCCCcEEEEEECCCccccc-------
Confidence            99999999999999999987643                               2567888889999986311       


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                                              ..+.+..++++++++..++++++|||++|.||+++|+++.
T Consensus       125 ----------------------------------------~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  164 (170)
T 1ek0_A          125 ----------------------------------------GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIG  164 (170)
T ss_dssp             ----------------------------------------CCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             ----------------------------------------cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence                                                    1256788899999999999999999999999999999998


Q ss_pred             HHH
Q psy17467        247 AEL  249 (730)
Q Consensus       247 ~~l  249 (730)
                      +.+
T Consensus       165 ~~i  167 (170)
T 1ek0_A          165 EKI  167 (170)
T ss_dssp             TTS
T ss_pred             HHH
Confidence            654

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.94  E-value=1.9e-27  Score=234.80  Aligned_cols=212  Identities=24%  Similarity=0.355  Sum_probs=148.2

Q ss_pred             CCCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeC-CeEEEEEEEeCCCchhhhhhhHhhhcc
Q psy17467          1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN-NERIKLQIWDTAGQERFRSITQSYYRS   79 (730)
Q Consensus         1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vd-g~~v~LqLwDTpG~e~~~sl~~~~~r~   79 (730)
                      |+..+..+||+|+|++|||||||+++|+++.+...+.++.+.+......... +..+.+.+|||+|++.+..++..++++
T Consensus         5 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   84 (218)
T 4djt_A            5 MERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIG   84 (218)
T ss_dssp             -----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred             cccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhc
Confidence            4566778999999999999999999999999888888888877766666554 444889999999999999999999999


Q ss_pred             ccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhh
Q psy17467         80 AHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDE  159 (730)
Q Consensus        80 ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e  159 (730)
                      +|++|+|||++++.+|+++..|+..+.....                               .+.|+++|+||+|+.+  
T Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------------------------~~~piilv~nK~Dl~~--  131 (218)
T 4djt_A           85 ASGAILFFDVTSRITCQNLARWVKEFQAVVG-------------------------------NEAPIVVCANKIDIKN--  131 (218)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-------------------------------SSSCEEEEEECTTCC---
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-------------------------------CCCCEEEEEECCCCcc--
Confidence            9999999999999999999999999876542                               3467888888888753  


Q ss_pred             HHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChH
Q psy17467        160 HVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVE  239 (730)
Q Consensus       160 ~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVe  239 (730)
                                                                      .+.+..+++..++...++++++|||++|.||+
T Consensus       132 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  163 (218)
T 4djt_A          132 ------------------------------------------------RQKISKKLVMEVLKGKNYEYFEISAKTAHNFG  163 (218)
T ss_dssp             ---------------------------------------------------CCHHHHHHHTTTCCCEEEEEBTTTTBTTT
T ss_pred             ------------------------------------------------ccccCHHHHHHHHHHcCCcEEEEecCCCCCHH
Confidence                                                            23567788899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHHhhcCCCC
Q psy17467        240 KLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNI  307 (730)
Q Consensus       240 eLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~~k~~p~~  307 (730)
                      ++|++|.+.+.+..........+.....+           ....+|+...+   ...|++|....||+
T Consensus       164 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~---~~~y~~q~~~~pp~  217 (218)
T 4djt_A          164 LPFLHLARIFTGRPDLIFVSNVNLEPTEV-----------NYDYHSPEESK---YIDYMEQASKMAPE  217 (218)
T ss_dssp             HHHHHHHHHHHCCTTCCBCSCCCCCBCCC-----------CCCCCCC---------------------
T ss_pred             HHHHHHHHHHhcccccccccccCcCCCcc-----------ccCccCchhhh---hHHHHHHHhccCCC
Confidence            99999999885443332222222222111           12223332222   45688888777775

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.94  E-value=1.9e-26  Score=215.44  Aligned_cols=162  Identities=32%  Similarity=0.573  Sum_probs=142.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||+++|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++++..++..+++++|++++|
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            48999999999999999999999999888888888544 56777888889999999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||++++.+|+.+..|+..+....                              ..++.|+++|+||+|+.+         
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~piilv~nK~Dl~~---------  122 (167)
T 1c1y_A           82 YSITAQSTFNDLQDLREQILRVK------------------------------DTEDVPMILVGNKCDLED---------  122 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHH------------------------------CCSCCCEEEEEECTTCGG---------
T ss_pred             EECCCHHHHHHHHHHHHHHHHhh------------------------------CcCCCcEEEEEECccccc---------
Confidence            99999999999999999887643                              125678888899998853         


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc-CCeEEEEecCCCCChHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH-DMYYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l-g~~fvEtSAktG~GVeeLFe~L  245 (730)
                                                               .+.++.++++.+++.+ ++++++|||++|.||+++|++|
T Consensus       123 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (167)
T 1c1y_A          123 -----------------------------------------ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL  161 (167)
T ss_dssp             -----------------------------------------GCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred             -----------------------------------------cccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHH
Confidence                                                     2456778899999988 7899999999999999999999


Q ss_pred             HHHH
Q psy17467        246 AAEL  249 (730)
Q Consensus       246 i~~l  249 (730)
                      .+.+
T Consensus       162 ~~~i  165 (167)
T 1c1y_A          162 VRQI  165 (167)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8876

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.94  E-value=2.3e-26  Score=218.87  Aligned_cols=167  Identities=19%  Similarity=0.295  Sum_probs=140.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      ..+||+++|++|||||||+++|+++.+.. +.||++ +.+...+.+++..+.+++|||+|+++     ..+++++|++|+
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il   78 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTES-EQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF   78 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSS-SEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcc-eeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence            46999999999999999999999999887 778887 44577888899999999999999876     467889999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      |||++++.||+.+..|++.+.....                            ...++.|+++||||+|+.+.       
T Consensus        79 v~D~~~~~s~~~~~~~~~~i~~~~~----------------------------~~~~~~piilv~nK~Dl~~~-------  123 (178)
T 2iwr_A           79 VFSLEDENSFQAVSRLHGQLSSLRG----------------------------EGRGGLALALVGTQDRISAS-------  123 (178)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHC----------------------------SSSCCCEEEEEEECTTCBTT-------
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHHh----------------------------cCCCCCCEEEEEECcccccc-------
Confidence            9999999999999998887765431                            01256788888999988421       


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc-CCeEEEEecCCCCChHHHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH-DMYYLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l-g~~fvEtSAktG~GVeeLFe~  244 (730)
                                                               ..+.++.++++++++.. +++|++|||++|.||+++|+.
T Consensus       124 -----------------------------------------~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~  162 (178)
T 2iwr_A          124 -----------------------------------------SPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQE  162 (178)
T ss_dssp             -----------------------------------------BCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHH
T ss_pred             -----------------------------------------ccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHH
Confidence                                                     23578889999999886 689999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy17467        245 IAAELMEKLAE  255 (730)
Q Consensus       245 Li~~l~e~~~~  255 (730)
                      +++.+.+....
T Consensus       163 l~~~~~~~~~~  173 (178)
T 2iwr_A          163 VAQKVVTLRKQ  173 (178)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99998766544

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.94  E-value=1.9e-26  Score=225.62  Aligned_cols=170  Identities=43%  Similarity=0.811  Sum_probs=148.0

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI   83 (730)
                      .+..+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   96 (213)
T 3cph_A           17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI   96 (213)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence            45579999999999999999999999999888889999899888999999889999999999999999999999999999


Q ss_pred             EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      |+|||++++.+|+.+..|+..+.....                               .+.|+++|+||+|+.       
T Consensus        97 i~v~d~~~~~s~~~~~~~~~~i~~~~~-------------------------------~~~piilv~nK~Dl~-------  138 (213)
T 3cph_A           97 ILVYDVTDERTFTNIKQWFKTVNEHAN-------------------------------DEAQLLLVGNKSDME-------  138 (213)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHTT-------------------------------TCSEEEEEEECTTCS-------
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcC-------------------------------CCCCEEEEEECCCCc-------
Confidence            999999999999999999999876532                               356677777777762       


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM  243 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe  243 (730)
                                                                  .+.+..++++++++.+++++++|||++|.||+++|+
T Consensus       139 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  174 (213)
T 3cph_A          139 --------------------------------------------TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF  174 (213)
T ss_dssp             --------------------------------------------SCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHH
T ss_pred             --------------------------------------------ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence                                                        345677888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy17467        244 QIAAELMEKLAE  255 (730)
Q Consensus       244 ~Li~~l~e~~~~  255 (730)
                      +|.+.+.+....
T Consensus       175 ~l~~~~~~~~~~  186 (213)
T 3cph_A          175 TLAKLIQEKIDS  186 (213)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999988765543

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.94  E-value=2.4e-26  Score=218.67  Aligned_cols=170  Identities=30%  Similarity=0.521  Sum_probs=146.2

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI   83 (730)
                      ....+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++++..++..+++.+|++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   93 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence            34569999999999999999999999998888888887444 56678888889999999999999999999999999999


Q ss_pred             EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      |+|||++++.+|+.+..|+..+.....                              ..+.|+++|+||+|+.+      
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~------------------------------~~~~piilv~nK~Dl~~------  137 (187)
T 2a9k_A           94 LCVFSITEMESFAATADFREQILRVKE------------------------------DENVPFLLVGNKSDLED------  137 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHC------------------------------CTTCCEEEEEECGGGGG------
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcC------------------------------CCCCCEEEEEECccccc------
Confidence            999999999999999999999876541                              24678888888888752      


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM  243 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe  243 (730)
                                                                  .+.+..++++++++.+++++++|||++|.||+++|+
T Consensus       138 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  173 (187)
T 2a9k_A          138 --------------------------------------------KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF  173 (187)
T ss_dssp             --------------------------------------------GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             --------------------------------------------cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHH
Confidence                                                        245677889999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy17467        244 QIAAELMEKLA  254 (730)
Q Consensus       244 ~Li~~l~e~~~  254 (730)
                      +|++.+.+++.
T Consensus       174 ~l~~~i~~~~~  184 (187)
T 2a9k_A          174 DLMREIRARKM  184 (187)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhhc
Confidence            99999866543

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.94  E-value=4e-26  Score=217.94  Aligned_cols=169  Identities=28%  Similarity=0.462  Sum_probs=144.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      ..+||+|+|++|||||||+++|+++.+...+.++.+ +.....+.+++..+.+++|||||++++..++..+++.+|++++
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            468999999999999999999999998888877775 5666788889999999999999999999999999999999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      |||++++.+|+.+..|+..+....                              ..++.|+++|+||+|+.         
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~p~i~v~nK~Dl~---------  122 (189)
T 4dsu_A           82 VFAINNTKSFEDIHHYREQIKRVK------------------------------DSEDVPMVLVGNKCDLP---------  122 (189)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHT------------------------------TCSCCCEEEEEECTTSS---------
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCcEEEEEECccCc---------
Confidence            999999999999999999987643                              12466777777777764         


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L  245 (730)
                                                                .+.+..++++.+++.+++++++|||++|.||+++|+++
T Consensus       123 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  160 (189)
T 4dsu_A          123 ------------------------------------------SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL  160 (189)
T ss_dssp             ------------------------------------------SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             ------------------------------------------ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence                                                      34577889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy17467        246 AAELMEKLAEK  256 (730)
Q Consensus       246 i~~l~e~~~~~  256 (730)
                      ++.+.+.....
T Consensus       161 ~~~~~~~~~~~  171 (189)
T 4dsu_A          161 VREIRKHKEKM  171 (189)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHhhhhc
Confidence            99997765554

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=2e-26  Score=223.91  Aligned_cols=166  Identities=41%  Similarity=0.658  Sum_probs=147.6

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      .++..+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++++...+..+++.+|+
T Consensus        19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   98 (192)
T 2fg5_A           19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA   98 (192)
T ss_dssp             --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred             ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence            56778999999999999999999999999888888999988888888888888999999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +|+|||++++.+|+.+..|+..+....                               .++.|+++|+||+|+.+     
T Consensus        99 iilV~d~~~~~s~~~~~~~~~~i~~~~-------------------------------~~~~piiiv~NK~Dl~~-----  142 (192)
T 2fg5_A           99 AVIVYDITKQDSFYTLKKWVKELKEHG-------------------------------PENIVMAIAGNKCDLSD-----  142 (192)
T ss_dssp             EEEEEETTCTHHHHHHHHHHHHHHHHS-------------------------------CTTCEEEEEEECGGGGG-----
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhC-------------------------------CCCCcEEEEEECccccc-----
Confidence            999999999999999999999987643                               14677888888888742     


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF  242 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF  242 (730)
                                                                   .+.++.++++++++..++++++|||++|.||+++|
T Consensus       143 ---------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  177 (192)
T 2fg5_A          143 ---------------------------------------------IREVPLKDAKEYAESIGAIVVETSAKNAINIEELF  177 (192)
T ss_dssp             ---------------------------------------------GCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHH
T ss_pred             ---------------------------------------------ccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHH
Confidence                                                         24577889999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy17467        243 MQIAAEL  249 (730)
Q Consensus       243 e~Li~~l  249 (730)
                      +.|.+.+
T Consensus       178 ~~l~~~i  184 (192)
T 2fg5_A          178 QGISRQI  184 (192)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHHH
Confidence            9998766

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=1.3e-26  Score=224.40  Aligned_cols=175  Identities=27%  Similarity=0.526  Sum_probs=148.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      +..+||+++|++|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+++|||+|++++..++..+++++|++|
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   94 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL   94 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence            4679999999999999999999999999888888887554 567788888899999999999999999999999999999


Q ss_pred             EEeecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         85 LVYDISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        85 LVyDvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      +|||++++.+|+.+. .|+..+....                                ++.|+++|+||+|+.+......
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~--------------------------------~~~piilv~nK~Dl~~~~~~~~  142 (194)
T 2atx_A           95 ICFSVVNPASFQNVKEEWVPELKEYA--------------------------------PNVPFLLIGTQIDLRDDPKTLA  142 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS--------------------------------TTCCEEEEEECTTSTTCHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEEChhhcccccchh
Confidence            999999999999997 6988886542                                4688999999999975432110


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLF  242 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLF  242 (730)
                      .+                                      .+...+.++.+++.++++.+++ .|++|||++|.||+++|
T Consensus       143 ~~--------------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  184 (194)
T 2atx_A          143 RL--------------------------------------NDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF  184 (194)
T ss_dssp             HH--------------------------------------TTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHH
T ss_pred             hc--------------------------------------ccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHH
Confidence            00                                      0113467888999999999998 89999999999999999


Q ss_pred             HHHHHHHH
Q psy17467        243 MQIAAELM  250 (730)
Q Consensus       243 e~Li~~l~  250 (730)
                      ++|++.++
T Consensus       185 ~~l~~~i~  192 (194)
T 2atx_A          185 DEAIIAIL  192 (194)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998764

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.94  E-value=6.3e-27  Score=230.87  Aligned_cols=173  Identities=35%  Similarity=0.663  Sum_probs=149.8

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe----------EEEEEEEeCCCchhhhhh
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE----------RIKLQIWDTAGQERFRSI   72 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~----------~v~LqLwDTpG~e~~~sl   72 (730)
                      ++++.+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++.          .+.+.||||+|++++...
T Consensus        21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~  100 (217)
T 2f7s_A           21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL  100 (217)
T ss_dssp             CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred             CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence            5678899999999999999999999999998888899998888888888776          789999999999999999


Q ss_pred             hHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccC
Q psy17467         73 TQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDK  152 (730)
Q Consensus        73 ~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK  152 (730)
                      +..+++++|++|+|||++++.+|+.+..|+..+....                              ...+.|+++|+||
T Consensus       101 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~------------------------------~~~~~piilV~NK  150 (217)
T 2f7s_A          101 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA------------------------------YCENPDIVLIGNK  150 (217)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCC------------------------------TTTCCEEEEEEEC
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc------------------------------CcCCCCEEEEEEC
Confidence            9999999999999999999999999998987753211                              1256788888888


Q ss_pred             CCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEec
Q psy17467        153 TDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSA  232 (730)
Q Consensus       153 ~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSA  232 (730)
                      +|+.+                                                  .+.++.++++++++.+++++++|||
T Consensus       151 ~Dl~~--------------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~Sa  180 (217)
T 2f7s_A          151 ADLPD--------------------------------------------------QREVNERQARELADKYGIPYFETSA  180 (217)
T ss_dssp             TTCGG--------------------------------------------------GCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred             Ccccc--------------------------------------------------ccccCHHHHHHHHHHCCCcEEEEEC
Confidence            88852                                                  2456788999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHHHHHHHH
Q psy17467        233 KASDNVEKLFMQIAAELMEKLAE  255 (730)
Q Consensus       233 ktG~GVeeLFe~Li~~l~e~~~~  255 (730)
                      ++|.||+++|++|++.+.++...
T Consensus       181 ~~g~gi~~l~~~l~~~i~~~~~~  203 (217)
T 2f7s_A          181 ATGQNVEKAVETLLDLIMKRMEQ  203 (217)
T ss_dssp             TTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHhhc
Confidence            99999999999999998765444

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.94  E-value=1.9e-26  Score=214.68  Aligned_cols=163  Identities=31%  Similarity=0.555  Sum_probs=140.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||+++|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++++..++..+++.+|++++|
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence            58999999999999999999999998888878887444 56678889889999999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||++++.+|+.+..|+..+.....                              ..+.|+++|+||+|+.+         
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~------------------------------~~~~piilv~nK~Dl~~---------  123 (168)
T 1u8z_A           83 FSITEMESFAATADFREQILRVKE------------------------------DENVPFLLVGNKSDLED---------  123 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHC------------------------------CTTSCEEEEEECGGGGG---------
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcC------------------------------CCCCcEEEEEECccccc---------
Confidence            999999999999999999876541                              24678888888888852         


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                                               .+.++.++++++++..++++++|||++|.||+++|++++
T Consensus       124 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  162 (168)
T 1u8z_A          124 -----------------------------------------KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLM  162 (168)
T ss_dssp             -----------------------------------------GCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             -----------------------------------------cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHH
Confidence                                                     245678899999999999999999999999999999999


Q ss_pred             HHHH
Q psy17467        247 AELM  250 (730)
Q Consensus       247 ~~l~  250 (730)
                      +.+.
T Consensus       163 ~~i~  166 (168)
T 1u8z_A          163 REIR  166 (168)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8774

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.94  E-value=4e-26  Score=221.76  Aligned_cols=170  Identities=31%  Similarity=0.527  Sum_probs=148.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      ...+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++++..++..+++.+|++|
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   90 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   90 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence            3568999999999999999999999998888888887444 567788998899999999999999999999999999999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      +|||++++.+|+.+..|+..+....                              ...+.|+++|+||+|+.+       
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~piilv~nK~Dl~~-------  133 (206)
T 2bov_A           91 CVFSITEMESFAATADFREQILRVK------------------------------EDENVPFLLVGNKSDLED-------  133 (206)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHT------------------------------TCSCCCEEEEEECTTCGG-------
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEEeccCccc-------
Confidence            9999999999999999999987653                              124678888889888853       


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~  244 (730)
                                                                 .+.++.++++.+++.+++++++|||++|.||+++|++
T Consensus       134 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  170 (206)
T 2bov_A          134 -------------------------------------------KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFD  170 (206)
T ss_dssp             -------------------------------------------GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred             -------------------------------------------cccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence                                                       2457788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy17467        245 IAAELMEKLAE  255 (730)
Q Consensus       245 Li~~l~e~~~~  255 (730)
                      |++.+.+....
T Consensus       171 l~~~i~~~~~~  181 (206)
T 2bov_A          171 LMREIRARKME  181 (206)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHcccc
Confidence            99999765443

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.94  E-value=8.8e-27  Score=218.44  Aligned_cols=164  Identities=24%  Similarity=0.391  Sum_probs=120.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||+++|++|||||||+++|++..+... .++.+.++ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            58999999999999999999997765433 35666444 56778899999999999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||++++.+|+.+..|+..+....                              ..++.|+++|+||+|+.+         
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~p~ilv~nK~Dl~~---------  120 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRAR------------------------------QTDDVPIILVGNKSDLVR---------  120 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC---------------------------------CCCEEEEEECTTCCS---------
T ss_pred             EECCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEEecccccc---------
Confidence            99999999999999999886532                              125678888888888752         


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                                               .+.++.++++.++...++++++|||++|.||+++|++++
T Consensus       121 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A          121 -----------------------------------------SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             -----------------------------------------SCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             -----------------------------------------ccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence                                                     256788999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy17467        247 AELMEK  252 (730)
Q Consensus       247 ~~l~e~  252 (730)
                      +.+.++
T Consensus       160 ~~~~~~  165 (166)
T 3q72_A          160 RQIRLR  165 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            988553

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.94  E-value=1.3e-26  Score=215.59  Aligned_cols=163  Identities=32%  Similarity=0.533  Sum_probs=143.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||+++|++|||||||+++|+++.+...+.++.+ +.....+.+++..+.+.+|||||++++..++..+++++|++++|
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcc-eeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            48999999999999999999999998888888887 44577888899899999999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||++++.+++.+..|+..+....                              ...+.|+++|+||+|+.+         
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~piilv~nK~Dl~~---------  122 (167)
T 1kao_A           82 YSLVNQQSFQDIKPMRDQIIRVK------------------------------RYEKVPVILVGNKVDLES---------  122 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHT------------------------------TTSCCCEEEEEECGGGGG---------
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEEECCcccc---------
Confidence            99999999999999999886643                              124678888888888742         


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                                               .+.+..++++++++.+++++++|||++|.||+++|++++
T Consensus       123 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  161 (167)
T 1kao_A          123 -----------------------------------------EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV  161 (167)
T ss_dssp             -----------------------------------------GCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred             -----------------------------------------cccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHH
Confidence                                                     245677889999999999999999999999999999999


Q ss_pred             HHHH
Q psy17467        247 AELM  250 (730)
Q Consensus       247 ~~l~  250 (730)
                      +.+.
T Consensus       162 ~~~~  165 (167)
T 1kao_A          162 RQMN  165 (167)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8774

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.94  E-value=1.9e-26  Score=224.33  Aligned_cols=168  Identities=46%  Similarity=0.805  Sum_probs=141.8

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      +.+..+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+|||+|++++..++..+++++|+
T Consensus        22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~  101 (192)
T 2il1_A           22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG  101 (192)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred             ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence            45678999999999999999999999999888888999989999999999989999999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +|+|||++++.+|+.+..|+..+.....                               .+.|+++|+||+|+.+     
T Consensus       102 iilV~D~~~~~s~~~~~~~~~~i~~~~~-------------------------------~~~piilV~NK~Dl~~-----  145 (192)
T 2il1_A          102 IILVYDITKKETFDDLPKWMKMIDKYAS-------------------------------EDAELLLVGNKLDCET-----  145 (192)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSC-------------------------------TTCEEEEEEECGGGGG-----
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcC-------------------------------CCCcEEEEEECccccc-----
Confidence            9999999999999999999888865431                               4677888888888752     


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc-CCeEEEEecCCCCChHHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH-DMYYLETSAKASDNVEKL  241 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l-g~~fvEtSAktG~GVeeL  241 (730)
                                                                   .+.++.++++++++.+ ++.+++|||++|.||+++
T Consensus       146 ---------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  180 (192)
T 2il1_A          146 ---------------------------------------------DREITRQQGEKFAQQITGMRFCEASAKDNFNVDEI  180 (192)
T ss_dssp             ---------------------------------------------GCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHH
T ss_pred             ---------------------------------------------ccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHH
Confidence                                                         2457778899999885 889999999999999999


Q ss_pred             HHHHHHHHHH
Q psy17467        242 FMQIAAELME  251 (730)
Q Consensus       242 Fe~Li~~l~e  251 (730)
                      |++|++.+.+
T Consensus       181 ~~~l~~~i~~  190 (192)
T 2il1_A          181 FLKLVDDILK  190 (192)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988753

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.94  E-value=3.4e-26  Score=219.33  Aligned_cols=167  Identities=34%  Similarity=0.600  Sum_probs=145.1

Q ss_pred             CCCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeE-------------------------
Q psy17467          1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNER-------------------------   55 (730)
Q Consensus         1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~-------------------------   55 (730)
                      |+ ++..+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..                         
T Consensus         2 m~-~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (208)
T 3clv_A            2 ME-KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIIT   80 (208)
T ss_dssp             CC-CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC---------------------------
T ss_pred             CC-CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccc
Confidence            54 4567999999999999999999999999988888999988888888887765                         


Q ss_pred             ------------EEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCc
Q psy17467         56 ------------IKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSG  123 (730)
Q Consensus        56 ------------v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~d  123 (730)
                                  +.+.||||||++.+..++..+++.+|++|+|||++++.+++.+..|+..+....              
T Consensus        81 ~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--------------  146 (208)
T 3clv_A           81 NQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--------------  146 (208)
T ss_dssp             ----CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--------------
T ss_pred             cccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--------------
Confidence                        889999999999999999999999999999999999999999999999986643              


Q ss_pred             hhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCcccccccc
Q psy17467        124 LKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNK  203 (730)
Q Consensus       124 l~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK  203 (730)
                                         +.|+++|+||+|+                                                
T Consensus       147 -------------------~~piilv~NK~D~------------------------------------------------  159 (208)
T 3clv_A          147 -------------------NYIIILVANKIDK------------------------------------------------  159 (208)
T ss_dssp             -------------------CCEEEEEEECTTC------------------------------------------------
T ss_pred             -------------------CCcEEEEEECCCc------------------------------------------------
Confidence                               2567777777773                                                


Q ss_pred             ccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHHHHHHH
Q psy17467        204 IDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK  252 (730)
Q Consensus       204 ~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~~l~e~  252 (730)
                         ..+.+..++++++++..++++++|||++|.||+++|++|.+.+.++
T Consensus       160 ---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  205 (208)
T 3clv_A          160 ---NKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN  205 (208)
T ss_dssp             ---C-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             ---ccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence               2356778899999999999999999999999999999999888654

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=8.8e-27  Score=234.25  Aligned_cols=167  Identities=23%  Similarity=0.330  Sum_probs=137.6

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh-hhhhhHhhhccc
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVF--PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER-FRSITQSYYRSA   80 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f--~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~-~~sl~~~~~r~A   80 (730)
                      ++..+||+|||++|||||||+++|++...  ... .+++|.+++.+.+.+++..+.+.+|||+|.+. +..+...+++.+
T Consensus        34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a  112 (211)
T 2g3y_A           34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG  112 (211)
T ss_dssp             -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence            45679999999999999999999997543  333 35677788888899999999999999999876 556777889999


Q ss_pred             cEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhH
Q psy17467         81 HALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEH  160 (730)
Q Consensus        81 DaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~  160 (730)
                      |++|+|||++++.||+.+..|+..+....                              ..++.|++|||||+|+.+   
T Consensus       113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~------------------------------~~~~~piilVgNK~DL~~---  159 (211)
T 2g3y_A          113 DAYLIVYSITDRASFEKASELRIQLRRAR------------------------------QTEDIPIILVGNKSDLVR---  159 (211)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTSG------------------------------GGTTSCEEEEEECTTCGG---
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHh------------------------------CCCCCcEEEEEEChHHhc---
Confidence            99999999999999999999988875421                              114678888888888852   


Q ss_pred             HHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHH
Q psy17467        161 VLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEK  240 (730)
Q Consensus       161 ~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVee  240 (730)
                                                                     .+.+..++++.++..++++|+||||++|.||++
T Consensus       160 -----------------------------------------------~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e  192 (211)
T 2g3y_A          160 -----------------------------------------------CREVSVSEGRACAVVFDCKFIETSAAVQHNVKE  192 (211)
T ss_dssp             -----------------------------------------------GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             -----------------------------------------------CceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence                                                           256778889999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy17467        241 LFMQIAAELME  251 (730)
Q Consensus       241 LFe~Li~~l~e  251 (730)
                      +|+.+++.+..
T Consensus       193 lf~~l~~~i~~  203 (211)
T 2g3y_A          193 LFEGIVRQVRL  203 (211)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988743

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.94  E-value=1.2e-26  Score=220.03  Aligned_cols=168  Identities=30%  Similarity=0.483  Sum_probs=144.4

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCC-eEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINN-ERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg-~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      .+..+||+|+|++|||||||+++|+++.+...+.||++.++....+.+++ ..+.+++|||||++.+..++..+++++|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            34579999999999999999999999988877778998888888898876 67899999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCc-eEEeccCCCcchhhHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALA-TALASDKTDLDEDEHV  161 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~P-VVLVGNK~DL~~~e~~  161 (730)
                      +|+|||++++.+|+.+..|+..+......                             ..+.| +++|+||+|+.+    
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-----------------------------~~~~~~iilv~nK~Dl~~----  129 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEE-----------------------------SETQPLVALVGNKIDLEH----  129 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHH-----------------------------HTCCCEEEEEEECGGGGG----
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcc-----------------------------cCCCCeEEEEEEcccccc----
Confidence            99999999999999999999998764310                             01233 677778777742    


Q ss_pred             HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHH
Q psy17467        162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL  241 (730)
Q Consensus       162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeL  241 (730)
                                                                    .+.++.++++++++.+++++++|||++|.||+++
T Consensus       130 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  163 (178)
T 2hxs_A          130 ----------------------------------------------MRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC  163 (178)
T ss_dssp             ----------------------------------------------GCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred             ----------------------------------------------ccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence                                                          2457788999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy17467        242 FMQIAAELM  250 (730)
Q Consensus       242 Fe~Li~~l~  250 (730)
                      |++|++.+.
T Consensus       164 ~~~l~~~~~  172 (178)
T 2hxs_A          164 FQKVAAEIL  172 (178)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            999998773

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.94  E-value=1.4e-26  Score=229.53  Aligned_cols=178  Identities=28%  Similarity=0.512  Sum_probs=147.3

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      .++..+||+|+|++|||||||+++|+++.+...+.||++.++ ...+.+++..+.++||||+|++.+..++..+++++|+
T Consensus        24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  102 (205)
T 1gwn_A           24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA  102 (205)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCE
Confidence            346779999999999999999999999999888889998655 5667788888999999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhh-HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467         83 LILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV  161 (730)
Q Consensus        83 IILVyDvtd~eSfe~L-~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~  161 (730)
                      +|+|||++++.+|+++ ..|+..+....                                ++.|+++||||+|+.++...
T Consensus       103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~--------------------------------~~~piilv~nK~Dl~~~~~~  150 (205)
T 1gwn_A          103 VLICFDISRPETLDSVLKKWKGEIQEFC--------------------------------PNTKMLLVGCKSDLRTDVST  150 (205)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC--------------------------------TTCEEEEEEECGGGGGCHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHC--------------------------------CCCCEEEEEechhhccchhh
Confidence            9999999999999998 67998886542                                46789999999999753221


Q ss_pred             HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC-CeEEEEecC-CCCChH
Q psy17467        162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYLETSAK-ASDNVE  239 (730)
Q Consensus       162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg-~~fvEtSAk-tG~GVe  239 (730)
                      ...+                                      .+...+.++.++++++++.++ +.|++|||+ +|.||+
T Consensus       151 ~~~~--------------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~  192 (205)
T 1gwn_A          151 LVEL--------------------------------------SNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVR  192 (205)
T ss_dssp             HHHH--------------------------------------HTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHH
T ss_pred             hhhh--------------------------------------cccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHH
Confidence            1000                                      011236788899999999988 699999999 689999


Q ss_pred             HHHHHHHHHHHH
Q psy17467        240 KLFMQIAAELME  251 (730)
Q Consensus       240 eLFe~Li~~l~e  251 (730)
                      ++|+.|++.++.
T Consensus       193 ~lf~~l~~~~l~  204 (205)
T 1gwn_A          193 DIFHVATLACVN  204 (205)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999988753

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.94  E-value=5.1e-26  Score=221.55  Aligned_cols=175  Identities=36%  Similarity=0.623  Sum_probs=148.9

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      .++..+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+|||||++.+..++..+++++|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (207)
T 1vg8_A            4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC   83 (207)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence            45678999999999999999999999999988888999999999999999988999999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +|+|||++++.+|+.+..|+..+......                           ....+.|+++|+||+|+.      
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---------------------------~~~~~~piilv~nK~Dl~------  130 (207)
T 1vg8_A           84 CVLVFDVTAPNTFKTLDSWRDEFLIQASP---------------------------RDPENFPFVVLGNKIDLE------  130 (207)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCC---------------------------SSGGGSCEEEEEECTTSS------
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhccc---------------------------ccCCCCcEEEEEECCCCc------
Confidence            99999999999999999999988765310                           011456777777777763      


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH-hcCCeEEEEecCCCCChHHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK-RHDMYYLETSAKASDNVEKL  241 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak-~lg~~fvEtSAktG~GVeeL  241 (730)
                                                                   .+.+..+++..++. ..++++++|||++|.||+++
T Consensus       131 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  165 (207)
T 1vg8_A          131 ---------------------------------------------NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQA  165 (207)
T ss_dssp             ---------------------------------------------CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHH
T ss_pred             ---------------------------------------------ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHH
Confidence                                                         34567788888888 67889999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy17467        242 FMQIAAELMEKLAE  255 (730)
Q Consensus       242 Fe~Li~~l~e~~~~  255 (730)
                      |++|++.+.+....
T Consensus       166 ~~~l~~~~~~~~~~  179 (207)
T 1vg8_A          166 FQTIARNALKQETE  179 (207)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccc
Confidence            99999998776544

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.94  E-value=1.8e-26  Score=225.35  Aligned_cols=172  Identities=36%  Similarity=0.668  Sum_probs=139.6

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI   83 (730)
                      .+..+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.++||||||++++..++..+++++|++
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  104 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV  104 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence            34569999999999999999999999998888889999888888999999999999999999999999999999999999


Q ss_pred             EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      |+|||++++.+|+.+..|+..+....                               ..+.|+++|+||+|+.+....  
T Consensus       105 ilv~d~~~~~s~~~~~~~~~~i~~~~-------------------------------~~~~piilv~NK~Dl~~~~~~--  151 (199)
T 2p5s_A          105 LLLYDVTCEKSFLNIREWVDMIEDAA-------------------------------HETVPIMLVGNKADIRDTAAT--  151 (199)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHC----------------------------------CCEEEEEECGGGHHHHHH--
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHhc-------------------------------CCCCCEEEEEECccccccccc--
Confidence            99999999999999999999886543                               146788999999999643210  


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM  243 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe  243 (730)
                                                                ...+.+..++++++++..+++|++|||++|.||+++|+
T Consensus       152 ------------------------------------------~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~  189 (199)
T 2p5s_A          152 ------------------------------------------EGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVL  189 (199)
T ss_dssp             ------------------------------------------TTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             ------------------------------------------ccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHH
Confidence                                                      02356788999999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy17467        244 QIAAELM  250 (730)
Q Consensus       244 ~Li~~l~  250 (730)
                      +|++.+.
T Consensus       190 ~l~~~i~  196 (199)
T 2p5s_A          190 HLAREVK  196 (199)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9998774

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.94  E-value=4.6e-26  Score=216.96  Aligned_cols=173  Identities=25%  Similarity=0.444  Sum_probs=145.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      ..+||+++|++|||||||+++|+++.+...+.++++. .....+.+++..+.+++|||||++++..++..+++++|++|+
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCC-EEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccc-eeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            3589999999999999999999999998888888874 446677889999999999999999999999999999999999


Q ss_pred             EeecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         86 VYDISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        86 VyDvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      |||++++.+|+.+. .|+..+....                                ++.|+++|+||+|+.+.......
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~--------------------------------~~~piilv~nK~Dl~~~~~~~~~  130 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHHC--------------------------------PNTPIILVGTKLDLRDDKDTIEK  130 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHS--------------------------------TTSCEEEEEECHHHHTCHHHHHH
T ss_pred             EEECCChhhHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEeEcccccccchhhhh
Confidence            99999999999997 6888886542                                46789999999999753321100


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFM  243 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe  243 (730)
                      +                                      .+...+.++.+++..+++.+++ ++++|||++|.||+++|+
T Consensus       131 ~--------------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  172 (186)
T 1mh1_A          131 L--------------------------------------KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD  172 (186)
T ss_dssp             H--------------------------------------HHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHH
T ss_pred             h--------------------------------------cccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHH
Confidence            0                                      0112367888999999999997 999999999999999999


Q ss_pred             HHHHHH
Q psy17467        244 QIAAEL  249 (730)
Q Consensus       244 ~Li~~l  249 (730)
                      .+++.+
T Consensus       173 ~l~~~~  178 (186)
T 1mh1_A          173 EAIRAV  178 (186)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999877

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=4.5e-26  Score=219.09  Aligned_cols=165  Identities=42%  Similarity=0.797  Sum_probs=146.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      ...+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.||||||++++..++..+++++|++|
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   92 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   92 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            35699999999999999999999999998888899998998899999999999999999999999999999999999999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      +|||++++.+++.+..|+..+....                              ...+.|+++|+||+|+.        
T Consensus        93 ~v~d~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~p~ilv~nK~Dl~--------  134 (195)
T 1x3s_A           93 LVYDVTRRDTFVKLDNWLNELETYC------------------------------TRNDIVNMLVGNKIDKE--------  134 (195)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCC------------------------------SCSCCEEEEEEECTTSS--------
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhc------------------------------CcCCCcEEEEEECCcCc--------
Confidence            9999999999999999998875432                              12456777777777763        


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~  244 (730)
                                                                 .+.+..+++.++++..++.|++|||++|.||+++|++
T Consensus       135 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  171 (195)
T 1x3s_A          135 -------------------------------------------NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE  171 (195)
T ss_dssp             -------------------------------------------SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             -------------------------------------------ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence                                                       3456778899999999999999999999999999999


Q ss_pred             HHHHHH
Q psy17467        245 IAAELM  250 (730)
Q Consensus       245 Li~~l~  250 (730)
                      |.+.+.
T Consensus       172 l~~~~~  177 (195)
T 1x3s_A          172 LVEKII  177 (195)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998874

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.94  E-value=1e-26  Score=227.53  Aligned_cols=168  Identities=25%  Similarity=0.459  Sum_probs=142.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      ...+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||+|++++..++..+++++|++|
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  100 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV  100 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence            3569999999999999999999999999988889988665 677777788899999999999999999999999999999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      +|||++++.+|+.+..|+..+....                              ...+.|+++|+||+|+.+       
T Consensus       101 ~v~d~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~piilv~nK~Dl~~-------  143 (201)
T 3oes_A          101 LVYSVTSLHSFQVIESLYQKLHEGH------------------------------GKTRVPVVLVGNKADLSP-------  143 (201)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHC-----------------------------------CCCEEEEEECTTCGG-------
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEEECccCcc-------
Confidence            9999999999999999999986532                              124678888889888852       


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~  244 (730)
                                                                 .+.++.++++.+++.++++|++|||++|.||+++|+.
T Consensus       144 -------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  180 (201)
T 3oes_A          144 -------------------------------------------EREVQAVEGKKLAESWGATFMESSARENQLTQGIFTK  180 (201)
T ss_dssp             -------------------------------------------GCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             -------------------------------------------ccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence                                                       2467888999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy17467        245 IAAELMEKL  253 (730)
Q Consensus       245 Li~~l~e~~  253 (730)
                      |++.+.+..
T Consensus       181 l~~~i~~~~  189 (201)
T 3oes_A          181 VIQEIARVE  189 (201)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHhhh
Confidence            999886543

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.1e-26  Score=229.54  Aligned_cols=172  Identities=45%  Similarity=0.790  Sum_probs=142.9

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      .+++.+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.||||||++++..++..+++.+|+
T Consensus         9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   88 (223)
T 3cpj_B            9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVG   88 (223)
T ss_dssp             -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred             CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence            35678999999999999999999999999988888999989988899999999999999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +|+|||++++.+|+.+..|+..+....                               ..+.|++||+||+|+.+     
T Consensus        89 vilV~D~~~~~s~~~~~~~l~~i~~~~-------------------------------~~~~piilv~nK~Dl~~-----  132 (223)
T 3cpj_B           89 ALIVYDISKSSSYENCNHWLSELRENA-------------------------------DDNVAVGLIGNKSDLAH-----  132 (223)
T ss_dssp             EEEEEC-CCHHHHHHHHHHHHHHHHHC-------------------------------C--CEEEEEECCGGGGG-----
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhC-------------------------------CCCCeEEEEEECccccc-----
Confidence            999999999999999999999986643                               14667888888888752     


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF  242 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF  242 (730)
                                                                   .+.++.+++..+++..+++|++|||++|.||+++|
T Consensus       133 ---------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  167 (223)
T 3cpj_B          133 ---------------------------------------------LRAVPTEESKTFAQENQLLFTETSALNSENVDKAF  167 (223)
T ss_dssp             ---------------------------------------------GCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHH
T ss_pred             ---------------------------------------------ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence                                                         24577888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy17467        243 MQIAAELMEKLAE  255 (730)
Q Consensus       243 e~Li~~l~e~~~~  255 (730)
                      ++|++.+.++...
T Consensus       168 ~~l~~~i~~~~~~  180 (223)
T 3cpj_B          168 EELINTIYQKVSK  180 (223)
T ss_dssp             HHHHHHHTTCC--
T ss_pred             HHHHHHHHHHhhh
Confidence            9999988654433

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.94  E-value=3.2e-27  Score=226.66  Aligned_cols=168  Identities=18%  Similarity=0.293  Sum_probs=135.6

Q ss_pred             CCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCC-----------CCCcceeeEEEEEE-EeCCeEEEEEEEeCCCchhh
Q psy17467          2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPG-----------QGATIGVDFMIKTV-EINNERIKLQIWDTAGQERF   69 (730)
Q Consensus         2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~-----------~~pTig~d~~~~~i-~vdg~~v~LqLwDTpG~e~~   69 (730)
                      ..++..+||+|+|++|||||||++.+. +.+...           +.||++.++....+ .+++..+.+++|||||++++
T Consensus         9 ~~~~~~~ki~vvG~~~~GKssL~~~l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~   87 (198)
T 3t1o_A            9 ANREINFKIVYYGPGLSGKTTNLKWIY-SKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY   87 (198)
T ss_dssp             TTTEEEEEEEEECSTTSSHHHHHHHHH-HTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred             hccccccEEEEECCCCCCHHHHHHHHH-hhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence            356678999999999999999996554 555544           33566666655555 66788899999999999999


Q ss_pred             hhhhHhhhccccEEEEEeecC------CCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCC
Q psy17467         70 RSITQSYYRSAHALILVYDIS------CQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPA  143 (730)
Q Consensus        70 ~sl~~~~~r~ADaIILVyDvt------d~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~  143 (730)
                      ..++..+++++|++|+|||++      +.++|+.+..|+.++..                                ..++
T Consensus        88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~--------------------------------~~~~  135 (198)
T 3t1o_A           88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL--------------------------------TLDD  135 (198)
T ss_dssp             SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC--------------------------------CTTS
T ss_pred             HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc--------------------------------ccCC
Confidence            999999999999999999999      45666666667766521                                1257


Q ss_pred             CceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc
Q psy17467        144 LATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH  223 (730)
Q Consensus       144 ~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l  223 (730)
                      .|+++|+||+|+.+                                                    .++.++++++++..
T Consensus       136 ~piilv~NK~Dl~~----------------------------------------------------~~~~~~~~~~~~~~  163 (198)
T 3t1o_A          136 VPIVIQVNKRDLPD----------------------------------------------------ALPVEMVRAVVDPE  163 (198)
T ss_dssp             SCEEEEEECTTSTT----------------------------------------------------CCCHHHHHHHHCTT
T ss_pred             CCEEEEEEchhccc----------------------------------------------------ccCHHHHHHHHHhc
Confidence            78888888888742                                                    36778999999999


Q ss_pred             CC-eEEEEecCCCCChHHHHHHHHHHHHHHHH
Q psy17467        224 DM-YYLETSAKASDNVEKLFMQIAAELMEKLA  254 (730)
Q Consensus       224 g~-~fvEtSAktG~GVeeLFe~Li~~l~e~~~  254 (730)
                      ++ ++++|||++|.||+++|++|++.+.++..
T Consensus       164 ~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~  195 (198)
T 3t1o_A          164 GKFPVLEAVATEGKGVFETLKEVSRLVLARVA  195 (198)
T ss_dssp             CCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred             CCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence            99 99999999999999999999999876543

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.94  E-value=6.3e-26  Score=220.30  Aligned_cols=164  Identities=20%  Similarity=0.341  Sum_probs=141.2

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI   83 (730)
                      ....+||+|+|++|||||||+++|+++.+...+.|+.+  .+...+.+++..+.+++|||+|++.+.     +++++|++
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~   89 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV   89 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence            34579999999999999999999999999888878743  345888899999999999999998776     78899999


Q ss_pred             EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      |+|||++++.||+.+..|+..+....                              ..++.|+++||||+|+.+.     
T Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~piilv~nK~Dl~~~-----  134 (184)
T 3ihw_A           90 VFVFSLEDEISFQTVYNYFLRLCSFR------------------------------NASEVPMVLVGTQDAISAA-----  134 (184)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHTTS------------------------------CGGGSCEEEEEECTTCBTT-----
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEEECcccccc-----
Confidence            99999999999999999999986542                              1146788888999998521     


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC-CeEEEEecCCCCChHHHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYLETSAKASDNVEKLF  242 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg-~~fvEtSAktG~GVeeLF  242 (730)
                                                                 ..+.++.++++++++.++ +.|++|||++|.||+++|
T Consensus       135 -------------------------------------------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf  171 (184)
T 3ihw_A          135 -------------------------------------------NPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVF  171 (184)
T ss_dssp             -------------------------------------------BCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHH
T ss_pred             -------------------------------------------cccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHH
Confidence                                                       236788899999999997 899999999999999999


Q ss_pred             HHHHHHHHHH
Q psy17467        243 MQIAAELMEK  252 (730)
Q Consensus       243 e~Li~~l~e~  252 (730)
                      +++++.+.++
T Consensus       172 ~~l~~~i~~~  181 (184)
T 3ihw_A          172 QDVAQKVVAL  181 (184)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988654

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.94  E-value=4.7e-26  Score=222.94  Aligned_cols=167  Identities=23%  Similarity=0.360  Sum_probs=136.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh-hhhhhHhhhcccc
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGV--FPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER-FRSITQSYYRSAH   81 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~--f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~-~~sl~~~~~r~AD   81 (730)
                      +..+||+++|++|||||||+++|++..  +... .+++|.++..+.+.+++..+.+.+|||+|... +..++..+++.+|
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            456999999999999999999999643  3333 35677788888889999999999999999876 5567788899999


Q ss_pred             EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467         82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV  161 (730)
Q Consensus        82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~  161 (730)
                      ++|+|||++++.||+.+..|+..+....                              ..++.|+++||||+|+.+    
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~------------------------------~~~~~piilV~NK~Dl~~----  128 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRAR------------------------------QTEDIPIILVGNKSDLVR----  128 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHT------------------------------TTSCCCEEEEEECTTCGG----
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhh------------------------------CCCCCeEEEEEechhhhc----
Confidence            9999999999999999999988876542                              124678888888888842    


Q ss_pred             HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHH
Q psy17467        162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL  241 (730)
Q Consensus       162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeL  241 (730)
                                                                    .+.+..++++.++..++++|+||||++|.||+++
T Consensus       129 ----------------------------------------------~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l  162 (192)
T 2cjw_A          129 ----------------------------------------------XREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL  162 (192)
T ss_dssp             ----------------------------------------------GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             ----------------------------------------------cccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence                                                          2457778888999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy17467        242 FMQIAAELMEK  252 (730)
Q Consensus       242 Fe~Li~~l~e~  252 (730)
                      |+.+++.+...
T Consensus       163 f~~l~~~~~~~  173 (192)
T 2cjw_A          163 FEGIVRQVRLR  173 (192)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999988543

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.94  E-value=4.4e-26  Score=226.16  Aligned_cols=176  Identities=29%  Similarity=0.537  Sum_probs=128.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      ..+||+|+|++|||||||+++|+++.+...+.++++ +.....+.+++..+.+.+|||+|++++..++..+++++|++|+
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~  111 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVF-ERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL  111 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC-------CCCCC-EEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccc-eeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence            469999999999999999999999998888888886 4446677889999999999999999999999999999999999


Q ss_pred             EeecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         86 VYDISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        86 VyDvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      |||++++.+|+.+. .|+..+....                                ++.|+++|+||+|+.+.......
T Consensus       112 v~d~~~~~s~~~~~~~~~~~~~~~~--------------------------------~~~piilv~nK~Dl~~~~~~~~~  159 (214)
T 2j1l_A          112 CFDVTSPNSFDNIFNRWYPEVNHFC--------------------------------KKVPIIVVGCKTDLRKDKSLVNK  159 (214)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC--------------------------------SSCCEEEEEECGGGGSCHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEEChhhhccchhhhh
Confidence            99999999999996 6988886542                                56789999999999754321100


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFM  243 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe  243 (730)
                      +                                      .++..+.++.++++++++.+++ .|++|||++|.||+++|+
T Consensus       160 ~--------------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~  201 (214)
T 2j1l_A          160 L--------------------------------------RRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQ  201 (214)
T ss_dssp             H--------------------------------------HHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHH
T ss_pred             h--------------------------------------cccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHH
Confidence            0                                      0112357888999999999998 999999999999999999


Q ss_pred             HHHHHHHHH
Q psy17467        244 QIAAELMEK  252 (730)
Q Consensus       244 ~Li~~l~e~  252 (730)
                      .|++.+.+.
T Consensus       202 ~l~~~~~~~  210 (214)
T 2j1l_A          202 EAAEVALSS  210 (214)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHh
Confidence            999988654

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=7.9e-26  Score=219.99  Aligned_cols=166  Identities=28%  Similarity=0.445  Sum_probs=143.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      ...+||+|+|++|||||||+++|+++.+...+.++.+.++ ...+.+++..+.+.+|||+|+++ ...+..+++++|++|
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii  103 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV  103 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence            3569999999999999999999999999888888888544 56678888899999999999987 778889999999999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      +|||++++.+|+.+..|+..+.....                              .++.|+++|+||+|+.+       
T Consensus       104 lv~D~~~~~s~~~~~~~~~~i~~~~~------------------------------~~~~piilv~NK~Dl~~-------  146 (196)
T 2atv_A          104 LVYDITDRGSFEEVLPLKNILDEIKK------------------------------PKNVTLILVGNKADLDH-------  146 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHT------------------------------TSCCCEEEEEECGGGGG-------
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhhC------------------------------CCCCcEEEEEECccccc-------
Confidence            99999999999999999998876431                              24678888888888852       


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCC-ChHHHHH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASD-NVEKLFM  243 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~-GVeeLFe  243 (730)
                                                                 .+.++.++++++++.++++|++|||++|. ||+++|+
T Consensus       147 -------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~  183 (196)
T 2atv_A          147 -------------------------------------------SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY  183 (196)
T ss_dssp             -------------------------------------------GCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred             -------------------------------------------ccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHH
Confidence                                                       24677889999999999999999999999 9999999


Q ss_pred             HHHHHHHHH
Q psy17467        244 QIAAELMEK  252 (730)
Q Consensus       244 ~Li~~l~e~  252 (730)
                      +|++.+.++
T Consensus       184 ~l~~~i~~~  192 (196)
T 2atv_A          184 ELCREVRRR  192 (196)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999988653

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.94  E-value=1.2e-26  Score=228.13  Aligned_cols=173  Identities=28%  Similarity=0.547  Sum_probs=145.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      ...+||+|+|++|||||||+++|+++.+...+.||++..+ ...+.+++..+.+++|||||++++..++..+++++|++|
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            3569999999999999999999999999888888888444 567778888899999999999999999999999999999


Q ss_pred             EEeecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         85 LVYDISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        85 LVyDvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      +|||++++.+|+.+. .|+..+....                                ++.|+++|+||+|+.+..... 
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~--------------------------------~~~piilv~nK~Dl~~~~~~~-  132 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFA--------------------------------PNVPIVLVGTKLDLRDDKGYL-  132 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC--------------------------------TTCCEEEEEECHHHHTCHHHH-
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEeCHHhhhCcccc-
Confidence            999999999999997 7998886542                                467899999999986532110 


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLF  242 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLF  242 (730)
                                                            ++   ..+.++.++++++++.+++ +|++|||++|.||+++|
T Consensus       133 --------------------------------------~~---~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  171 (212)
T 2j0v_A          133 --------------------------------------AD---HTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF  171 (212)
T ss_dssp             --------------------------------------HT---CSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHH
T ss_pred             --------------------------------------cc---ccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHH
Confidence                                                  00   1235778899999999996 99999999999999999


Q ss_pred             HHHHHHHHHH
Q psy17467        243 MQIAAELMEK  252 (730)
Q Consensus       243 e~Li~~l~e~  252 (730)
                      +++++.+.+.
T Consensus       172 ~~l~~~~~~~  181 (212)
T 2j0v_A          172 DTAIKVVLQP  181 (212)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhhh
Confidence            9999988653

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.94  E-value=9.5e-26  Score=220.99  Aligned_cols=175  Identities=27%  Similarity=0.549  Sum_probs=147.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      ...+||+|+|++|||||||+++|+++.+...+.|+++.++. ..+.+++..+.+.+|||||++++..++..+++++|++|
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            45689999999999999999999999998888888886654 45778888899999999999999999999999999999


Q ss_pred             EEeecCCCCchhhh-HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         85 LVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        85 LVyDvtd~eSfe~L-~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      +|||++++.+|+.+ ..|+..+....                                ++.|+++|+||+|+.+......
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~--------------------------------~~~piilv~nK~Dl~~~~~~~~  149 (201)
T 2gco_A          102 MCFSIDSPDSLENIPEKWTPEVKHFC--------------------------------PNVPIILVGNKKDLRQDEHTRR  149 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS--------------------------------TTCCEEEEEECGGGTTCHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEecHHhhcCccchh
Confidence            99999999999998 56888876532                                4688999999999975432111


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLF  242 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLF  242 (730)
                      .+                                      .+...+.++.+++.++++.+++ .|++|||++|.||+++|
T Consensus       150 ~~--------------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  191 (201)
T 2gco_A          150 EL--------------------------------------AKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF  191 (201)
T ss_dssp             HH--------------------------------------HTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHH
T ss_pred             hh--------------------------------------cccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHH
Confidence            00                                      0112356888999999999998 89999999999999999


Q ss_pred             HHHHHHHH
Q psy17467        243 MQIAAELM  250 (730)
Q Consensus       243 e~Li~~l~  250 (730)
                      +.|++.+.
T Consensus       192 ~~i~~~~l  199 (201)
T 2gco_A          192 EMATRAGL  199 (201)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.94  E-value=5.3e-27  Score=259.55  Aligned_cols=245  Identities=16%  Similarity=0.064  Sum_probs=174.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhh-----------
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSIT-----------   73 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~-----------   73 (730)
                      ..+||+++|++|||||||+|++++..+. ....|+++.+.....+.++|.  .+.+|||+|..+.....           
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence            4589999999999999999999987652 334456666666778888885  57899999985433221           


Q ss_pred             -HhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccC
Q psy17467         74 -QSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDK  152 (730)
Q Consensus        74 -~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK  152 (730)
                       ..+++.+|++++|+|+++..++++.. +...+..                                  .+.|+++|+||
T Consensus       257 ~~~~i~~ad~vllv~d~~~~~~~~~~~-i~~~l~~----------------------------------~~~~~ilv~NK  301 (439)
T 1mky_A          257 VVDSIEKADVVVIVLDATQGITRQDQR-MAGLMER----------------------------------RGRASVVVFNK  301 (439)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHHH-HHHHHHH----------------------------------TTCEEEEEEEC
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHHHH-HHHHHHH----------------------------------cCCCEEEEEEC
Confidence             24678899999999999887776531 2222211                                  45788899999


Q ss_pred             CCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEec
Q psy17467        153 TDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSA  232 (730)
Q Consensus       153 ~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSA  232 (730)
                      +|+.+....                                             ....+..+..+.++...++++++|||
T Consensus       302 ~Dl~~~~~~---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~SA  336 (439)
T 1mky_A          302 WDLVVHREK---------------------------------------------RYDEFTKLFREKLYFIDYSPLIFTSA  336 (439)
T ss_dssp             GGGSTTGGG---------------------------------------------CHHHHHHHHHHHCGGGTTSCEEECBT
T ss_pred             ccCCCchhh---------------------------------------------HHHHHHHHHHHHhccCCCCcEEEEEC
Confidence            998632100                                             00001111223344445689999999


Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHHhhcCCCCceeee
Q psy17467        233 KASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNIDIKSV  312 (730)
Q Consensus       233 ktG~GVeeLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~~k~~p~~~~~~~  312 (730)
                      ++|.||+++|+.+.+.+.++..+..+...+++.+..           ...++||    ++.+..|++|....||.|+.++
T Consensus       337 ~~g~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~-----------~~~~~~~----~~~ki~y~~q~~~~p~~~~~~~  401 (439)
T 1mky_A          337 DKGWNIDRMIDAMNLAYASYTTKVPSSAINSALQKV-----------LAFTNLP----RGLKIFFGVQVDIKPPTFLFFV  401 (439)
T ss_dssp             TTTBSHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH-----------HTTCCCS----TTCCEEEEEEEETTTTEEEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHhhcccCCHHHHHHHHHHH-----------HHcCCCC----CCcEEEEEEecCCCCCEEEEEE
Confidence            999999999999998886665544555555554444           2234455    5566678999999999999999


Q ss_pred             ccccccchhhHHHhHhhhhh-hhccCCceeEEEeec
Q psy17467        313 SGISQIRSDIVKSLSLYYYT-FVDLLHFKDCVYLSG  347 (730)
Q Consensus       313 ~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~  347 (730)
                      +.++.++.+|.|||++.+|+ .|++.|+|+++.+++
T Consensus       402 n~~~~~~~~y~r~l~~~~r~~~~~~~~~pi~~~~~~  437 (439)
T 1mky_A          402 NSIEKVKNPQKIFLRKLIRDYVFPFEGSPIFLKFKR  437 (439)
T ss_dssp             SCSTTCCHHHHHHHHHHHHHHTCCCTTCCCEEEEEE
T ss_pred             cCcccCCHHHHHHHHHHHHHhhCCCCCCCEEEEEec
Confidence            99999999999999999999 999999999999986

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.93  E-value=2.8e-26  Score=222.67  Aligned_cols=175  Identities=25%  Similarity=0.478  Sum_probs=112.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCCcceeeEEEEEEEeCCe--EEEEEEEeCCCchhhhhhhHhhhccc
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQG--VFPPGQGATIGVDFMIKTVEINNE--RIKLQIWDTAGQERFRSITQSYYRSA   80 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~--~f~~~~~pTig~d~~~~~i~vdg~--~v~LqLwDTpG~e~~~sl~~~~~r~A   80 (730)
                      ...+||+|+|++|||||||+++|+++  .+...+.+|++.++....+.+++.  .+.+.+|||||++++..++..+++++
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            45689999999999999999999998  788788889988888888999887  89999999999999999999999999


Q ss_pred             cEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhH
Q psy17467         81 HALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEH  160 (730)
Q Consensus        81 DaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~  160 (730)
                      |++|+|||++++.+|+.+..|+..+......                            ...+.|+++|+||+|+.+.  
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~----------------------------~~~~~piilv~nK~Dl~~~--  147 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPD----------------------------RERPLRAVLVANKTDLPPQ--  147 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSC----------------------------TTSCCEEEEEEECC-------
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcc----------------------------cccCCcEEEEEECcccchh--
Confidence            9999999999999999999999998765410                            0146778888888888520  


Q ss_pred             HHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCC-CCChH
Q psy17467        161 VLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKA-SDNVE  239 (730)
Q Consensus       161 ~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAkt-G~GVe  239 (730)
                                                                     .+.++.++++++++.+++++++|||++ |.||+
T Consensus       148 -----------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~  180 (208)
T 2yc2_C          148 -----------------------------------------------RHQVRLDMAQDWATTNTLDFFDVSANPPGKDAD  180 (208)
T ss_dssp             -------------------------------------------------CCCHHHHHHHHHHTTCEEEECCC-------C
T ss_pred             -----------------------------------------------hccCCHHHHHHHHHHcCCEEEEeccCCCCcCHH
Confidence                                                           246778899999999999999999999 99999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy17467        240 KLFMQIAAELMEKLAEK  256 (730)
Q Consensus       240 eLFe~Li~~l~e~~~~~  256 (730)
                      ++|++|++.+.+.....
T Consensus       181 ~l~~~i~~~~~~~~~~~  197 (208)
T 2yc2_C          181 APFLSIATTFYRNYEDK  197 (208)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999887665443

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=2.6e-25  Score=218.88  Aligned_cols=174  Identities=27%  Similarity=0.554  Sum_probs=140.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      ..+||+|+|++|||||||+++|+++.+...+.|+++.++. ..+.+++..+.+.+|||||++++..++..+++++|++|+
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~  102 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM  102 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence            4589999999999999999999999998888888875554 457788888999999999999999999999999999999


Q ss_pred             EeecCCCCchhhh-HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         86 VYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        86 VyDvtd~eSfe~L-~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      |||++++.+|+.+ ..|+..+....                                ++.|+++|+||+|+.+.......
T Consensus       103 v~d~~~~~s~~~~~~~~~~~~~~~~--------------------------------~~~piilv~nK~Dl~~~~~~~~~  150 (207)
T 2fv8_A          103 CFSVDSPDSLENIPEKWVPEVKHFC--------------------------------PNVPIILVANKKDLRSDEHVRTE  150 (207)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHS--------------------------------TTCCEEEEEECGGGGGCHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEEchhhhccccchhh
Confidence            9999999999998 56888876532                                56889999999999754321110


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFM  243 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe  243 (730)
                      +                                      .++..+.++.+++..++...++ .|++|||++|.||+++|+
T Consensus       151 ~--------------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~  192 (207)
T 2fv8_A          151 L--------------------------------------ARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFE  192 (207)
T ss_dssp             H--------------------------------------HHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHH
T ss_pred             h--------------------------------------hhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHH
Confidence            0                                      0112356888999999999998 899999999999999999


Q ss_pred             HHHHHHH
Q psy17467        244 QIAAELM  250 (730)
Q Consensus       244 ~Li~~l~  250 (730)
                      +|++.+.
T Consensus       193 ~l~~~i~  199 (207)
T 2fv8_A          193 TATRAAL  199 (207)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998874

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=2.6e-25  Score=208.33  Aligned_cols=163  Identities=28%  Similarity=0.440  Sum_probs=139.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||+++|++|||||||+++|+++.+...+.++.+..+ ...+..++..+.+.+|||||++++..++..+++.+|++|+|
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   81 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence            58999999999999999999999998888888887544 45667788889999999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||++++.+++.+..|+..+.....                             ..++.|+++|+||+|+.+         
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~-----------------------------~~~~~pii~v~nK~Dl~~---------  123 (172)
T 2erx_A           82 YSITSRQSLEELKPIYEQICEIKG-----------------------------DVESIPIMLVGNKCDESP---------  123 (172)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC--------------------------------CCCEEEEEECGGGGG---------
T ss_pred             EECcCHHHHHHHHHHHHHHHHHhC-----------------------------CCCCCCEEEEEEcccccc---------
Confidence            999999999999999988876431                             114678888888888853         


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                                               .+.+..++++.++...++++++|||++|.||+++|++|.
T Consensus       124 -----------------------------------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  162 (172)
T 2erx_A          124 -----------------------------------------SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL  162 (172)
T ss_dssp             -----------------------------------------GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             -----------------------------------------ccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHH
Confidence                                                     235667888899999999999999999999999999998


Q ss_pred             HHH
Q psy17467        247 AEL  249 (730)
Q Consensus       247 ~~l  249 (730)
                      +.+
T Consensus       163 ~~~  165 (172)
T 2erx_A          163 NLE  165 (172)
T ss_dssp             HTC
T ss_pred             HHH
Confidence            755

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=2.8e-25  Score=214.63  Aligned_cols=168  Identities=27%  Similarity=0.413  Sum_probs=141.9

Q ss_pred             CCCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccc
Q psy17467          1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSA   80 (730)
Q Consensus         1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~A   80 (730)
                      |++....+||+|+|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+|||||++++..++..+++.+
T Consensus         2 m~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   80 (199)
T 2gf0_A            2 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG   80 (199)
T ss_dssp             ---CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHC
T ss_pred             CccCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccC
Confidence            56667789999999999999999999999999888888887444 45667788889999999999999999999999999


Q ss_pred             cEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhH
Q psy17467         81 HALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEH  160 (730)
Q Consensus        81 DaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~  160 (730)
                      |++|+|||++++.+|+.+..|+..+.....                             ..++.|+++|+||+|+.    
T Consensus        81 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------------------------~~~~~piilv~nK~Dl~----  127 (199)
T 2gf0_A           81 HAFILVFSVTSKQSLEELGPIYKLIVQIKG-----------------------------SVEDIPVMLVGNKCDET----  127 (199)
T ss_dssp             SEEEEEEETTCHHHHHTTHHHHHHHHHHHS-----------------------------CGGGSCEEEEEECTTCS----
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHHhc-----------------------------CCCCCCEEEEEECccCC----
Confidence            999999999999999999999888765431                             01456777777777774    


Q ss_pred             HHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHH
Q psy17467        161 VLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEK  240 (730)
Q Consensus       161 ~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVee  240 (730)
                                                                     .+.+..+++..++..+++.+++|||++|.||++
T Consensus       128 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  160 (199)
T 2gf0_A          128 -----------------------------------------------QREVDTREAQAVAQEWKCAFMETSAKMNYNVKE  160 (199)
T ss_dssp             -----------------------------------------------SCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             -----------------------------------------------ccccCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Confidence                                                           245677888999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy17467        241 LFMQIAAEL  249 (730)
Q Consensus       241 LFe~Li~~l  249 (730)
                      +|++|++.+
T Consensus       161 l~~~l~~~~  169 (199)
T 2gf0_A          161 LFQELLTLE  169 (199)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHH
Confidence            999998866

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.93  E-value=1.5e-25  Score=220.77  Aligned_cols=174  Identities=25%  Similarity=0.453  Sum_probs=143.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      ...+||+++|++|||||||+++|+++.+...+.++++ +.....+.+++..+.+.+|||||++++..++..+++++|++|
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  106 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  106 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            4569999999999999999999999999888888886 566777888998999999999999999999999999999999


Q ss_pred             EEeecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         85 LVYDISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        85 LVyDvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      +|||++++.+|+.+. .|+..+....                                ++.|+++|+||+|+.+......
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~--------------------------------~~~piilv~nK~Dl~~~~~~~~  154 (204)
T 4gzl_A          107 ICFSLVSPASFENVRAKWYPEVRHHC--------------------------------PNTPIILVGTKLDLRDDKDTIE  154 (204)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC--------------------------------SSCCEEEEEECHHHHTCHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEechhhccchhhhh
Confidence            999999999999997 6888886542                                5788999999999975432110


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLF  242 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLF  242 (730)
                      ..                                      .+...+.++.+++..+++..++ +|++|||++|.||+++|
T Consensus       155 ~~--------------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  196 (204)
T 4gzl_A          155 KL--------------------------------------KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF  196 (204)
T ss_dssp             HH--------------------------------------HHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHH
T ss_pred             hh--------------------------------------hccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHH
Confidence            00                                      0112356888999999999997 59999999999999999


Q ss_pred             HHHHHHH
Q psy17467        243 MQIAAEL  249 (730)
Q Consensus       243 e~Li~~l  249 (730)
                      +++++.+
T Consensus       197 ~~l~~~~  203 (204)
T 4gzl_A          197 DEAIRAV  203 (204)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHh
Confidence            9998754

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.93  E-value=2.4e-26  Score=218.62  Aligned_cols=171  Identities=30%  Similarity=0.567  Sum_probs=128.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      ..+||+++|++|||||||+++|+++.+...+.||++..+ ...+.+++..+.+++|||||++++..++..+++++|++|+
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   85 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   85 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence            458999999999999999999999998888888887433 3345567777889999999999999999999999999999


Q ss_pred             EeecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         86 VYDISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        86 VyDvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      |||++++.+|+.+. .|+..+....                                ++.|+++|+||+|+.+...... 
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~--------------------------------~~~piilv~nK~Dl~~~~~~~~-  132 (182)
T 3bwd_D           86 AFSLISKASYENVSKKWIPELKHYA--------------------------------PGVPIVLVGTKLDLRDDKQFFI-  132 (182)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC--------------------------------TTCCEEEEEECHHHHTCHHHHH-
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEechhhhcCccccc-
Confidence            99999999999997 6988886542                                4678999999999865322100 


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFM  243 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe  243 (730)
                                                            . ....+.++.++++++++.+++ +|++|||++|.||+++|+
T Consensus       133 --------------------------------------~-~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  173 (182)
T 3bwd_D          133 --------------------------------------D-HPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFD  173 (182)
T ss_dssp             --------------------------------------H-C--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHH
T ss_pred             --------------------------------------c-cccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHH
Confidence                                                  0 011246788899999999997 999999999999999999


Q ss_pred             HHHHHH
Q psy17467        244 QIAAEL  249 (730)
Q Consensus       244 ~Li~~l  249 (730)
                      .+++.+
T Consensus       174 ~l~~~i  179 (182)
T 3bwd_D          174 AAIRVV  179 (182)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999876

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.93  E-value=8.6e-25  Score=202.69  Aligned_cols=162  Identities=30%  Similarity=0.502  Sum_probs=140.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||+++|++|||||||++++.++.+...+.++.+ +.....+.+++..+.+.+|||||++++...+..+++.+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccc-eEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            47999999999999999999999988877778776 44466778888889999999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||++++.+++.+..|+..+.....                              ..+.|+++|+||+|+.          
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~------------------------------~~~~p~iiv~nK~Dl~----------  121 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVKD------------------------------SDDVPMVLVGNKSDLA----------  121 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHT------------------------------CSCCCEEEEEECTTCS----------
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcC------------------------------CCCCcEEEEEEchhhh----------
Confidence            999999999999999998876531                              1356777777777774          


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                                               .+.+..++++++++.+++++++|||++|.|++++|+++.
T Consensus       122 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  160 (166)
T 2ce2_X          122 -----------------------------------------ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             -----------------------------------------CCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred             -----------------------------------------hcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence                                                     245667889999999999999999999999999999999


Q ss_pred             HHHH
Q psy17467        247 AELM  250 (730)
Q Consensus       247 ~~l~  250 (730)
                      +.+.
T Consensus       161 ~~~~  164 (166)
T 2ce2_X          161 REIR  164 (166)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8774

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.93  E-value=2.1e-27  Score=232.05  Aligned_cols=166  Identities=47%  Similarity=0.866  Sum_probs=138.9

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      +++..+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.||||+|++.+..++..+++++|+
T Consensus        29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~  108 (199)
T 3l0i_B           29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG  108 (199)
T ss_dssp             CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence            35678999999999999999999999999988888999989999999999999999999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +|+|||++++.+|+.+..|+..+....                               ..+.|+++|+||+|+.+     
T Consensus       109 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-------------------------------~~~~p~ilv~nK~Dl~~-----  152 (199)
T 3l0i_B          109 IIVVYDVTDQESFNNVKQWLQEIDRYA-------------------------------SENVNKLLVGNKCDLTT-----  152 (199)
T ss_dssp             EEECC-CCCSHHHHHHHHHHHHHHSCC--------------------------------CCSEEEEC-CCSSCC------
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhc-------------------------------cCCCCEEEEEECccCCc-----
Confidence            999999999999999999999985432                               24678888889998853     


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF  242 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF  242 (730)
                                                                   .+.+..+++++++..+++++++|||++|.||+++|
T Consensus       153 ---------------------------------------------~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~  187 (199)
T 3l0i_B          153 ---------------------------------------------KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF  187 (199)
T ss_dssp             ----------------------------------------------CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHH
T ss_pred             ---------------------------------------------cccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence                                                         23455667788999999999999999999999999


Q ss_pred             HHHHHHH
Q psy17467        243 MQIAAEL  249 (730)
Q Consensus       243 e~Li~~l  249 (730)
                      ++|++.+
T Consensus       188 ~~l~~~l  194 (199)
T 3l0i_B          188 MTMAAEI  194 (199)
T ss_dssp             HHHTTTT
T ss_pred             HHHHHHH
Confidence            9998766

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.93  E-value=9.9e-25  Score=210.09  Aligned_cols=165  Identities=30%  Similarity=0.463  Sum_probs=132.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      ..+||+++|++|||||||+++|+++.+...+.++.+ +.....+.+++..+.+.+|||+|++++..++..+++.+|++|+
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   98 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccc-eEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence            458999999999999999999999988877777776 4445678888988999999999999999999999999999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      |||++++.+|+.+..|+..+.....                              ..+.|+++|+||+|+.         
T Consensus        99 v~d~~~~~s~~~~~~~~~~i~~~~~------------------------------~~~~p~ilv~nK~Dl~---------  139 (190)
T 3con_A           99 VFAINNSKSFADINLYREQIKRVKD------------------------------SDDVPMVLVGNKCDLP---------  139 (190)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHT------------------------------CSCCCEEEEEECTTCS---------
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhC------------------------------CCCCeEEEEEECCcCC---------
Confidence            9999999999999999998866431                              1356777777777774         


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L  245 (730)
                                                                .+.+..++++++++.+++++++|||++|.|++++|++|
T Consensus       140 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  177 (190)
T 3con_A          140 ------------------------------------------TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTL  177 (190)
T ss_dssp             ------------------------------------------CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             ------------------------------------------cccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence                                                      24567788999999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy17467        246 AAELMEK  252 (730)
Q Consensus       246 i~~l~e~  252 (730)
                      ++.+.+.
T Consensus       178 ~~~~~~~  184 (190)
T 3con_A          178 VREIRQY  184 (190)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988654

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.92  E-value=9.9e-26  Score=223.68  Aligned_cols=164  Identities=32%  Similarity=0.610  Sum_probs=143.2

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      .....+||+|+|++|||||||+++|+.+.+...+.++.|.++....+.+++..+.+.+|||+|++.+..++..+++++|+
T Consensus        11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   90 (221)
T 3gj0_A           11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC   90 (221)
T ss_dssp             CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence            34567999999999999999999988888888888999989999999999999999999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +|+|||++++.+|+.+..|+..+....                                ++.|+++|+||+|+.+     
T Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--------------------------------~~~p~ilv~nK~Dl~~-----  133 (221)
T 3gj0_A           91 AIIMFDVTSRVTYKNVPNWHRDLVRVC--------------------------------ENIPIVLCGNKVDIKD-----  133 (221)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHS--------------------------------TTCCEEEEEECTTSSS-----
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEECCcccc-----
Confidence            999999999999999999999987643                                4678888888888853     


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF  242 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF  242 (730)
                                                                    +.+. +++..+++..++.|++|||++|.||+++|
T Consensus       134 ----------------------------------------------~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  166 (221)
T 3gj0_A          134 ----------------------------------------------RKVK-AKSIVFHRKKNLQYYDISAKSNYNFEKPF  166 (221)
T ss_dssp             ----------------------------------------------CSSC-GGGCCHHHHHTCEEEECBGGGTBTTTHHH
T ss_pred             ----------------------------------------------cccc-HHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence                                                          1111 24456777889999999999999999999


Q ss_pred             HHHHHHHH
Q psy17467        243 MQIAAELM  250 (730)
Q Consensus       243 e~Li~~l~  250 (730)
                      ++|.+.+.
T Consensus       167 ~~l~~~l~  174 (221)
T 3gj0_A          167 LWLARKLI  174 (221)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998873

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.92  E-value=1.7e-25  Score=209.27  Aligned_cols=161  Identities=23%  Similarity=0.385  Sum_probs=123.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+++|++|||||||+++|+++.+.. +.||++  +....+..++  +.+++|||||++++..++..+++++|++|+||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999888764 567877  3344555554  78999999999999999999999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |++++.||+.+..|+..+....                              ..++.|+++|+||+|+.+....      
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilv~nK~Dl~~~~~~------  119 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAED------------------------------ELRDAVLLVFANKQDLPNAMNA------  119 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCG------------------------------GGTTCEEEEEEECTTSTTCCCH------
T ss_pred             ECCCHHHHHHHHHHHHHHHhch------------------------------hhcCCeEEEEEECcCCcCCCCH------
Confidence            9999999999998988875421                              1256788999999998532100      


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA  247 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~  247 (730)
                                                               +.+..+.+...++..++++++|||++|.||+++|+++++
T Consensus       120 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (164)
T 1r8s_A          120 -----------------------------------------AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN  158 (164)
T ss_dssp             -----------------------------------------HHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred             -----------------------------------------HHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHH
Confidence                                                     000011111122234568999999999999999999998


Q ss_pred             HHH
Q psy17467        248 ELM  250 (730)
Q Consensus       248 ~l~  250 (730)
                      .+.
T Consensus       159 ~i~  161 (164)
T 1r8s_A          159 QLR  161 (164)
T ss_dssp             HC-
T ss_pred             HHh
Confidence            764

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.92  E-value=3.9e-24  Score=206.58  Aligned_cols=177  Identities=16%  Similarity=0.231  Sum_probs=130.9

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhcccc
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPP-GQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAH   81 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~-~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~AD   81 (730)
                      ......||+|+|++|||||||+++|+++.+.. .+.||++...  ..+...+  +.+.+|||+|++++..++..+++++|
T Consensus        13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d   88 (199)
T 4bas_A           13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEKGR--VAFTVFDMGGAKKFRGLWETYYDNID   88 (199)
T ss_dssp             ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCS
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEeCC--EEEEEEECCCCHhHHHHHHHHHhcCC
Confidence            34567899999999999999999999999988 7788888433  3444444  88999999999999999999999999


Q ss_pred             EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467         82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV  161 (730)
Q Consensus        82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~  161 (730)
                      ++|+|||++++.||+.+..|+..+.....                       ..-.+...++.|+++|+||+|+.+....
T Consensus        89 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~piilv~NK~Dl~~~~~~  145 (199)
T 4bas_A           89 AVIFVVDSSDHLRLCVVKSEIQAMLKHED-----------------------IRRELPGGGRVPFLFFANKMDAAGAKTA  145 (199)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHHTSHH-----------------------HHSBCTTSCBCCEEEEEECTTSTTCCCH
T ss_pred             EEEEEEECCcHHHHHHHHHHHHHHHhChh-----------------------hhhcccccCCCCEEEEEECcCCCCCCCH
Confidence            99999999999999999999988765321                       0000111247889999999998642100


Q ss_pred             HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHH-HHHHHHhcCCeEEEEecCCCCChHH
Q psy17467        162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEV-GEDFAKRHDMYYLETSAKASDNVEK  240 (730)
Q Consensus       162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee-~~~lak~lg~~fvEtSAktG~GVee  240 (730)
                                                                     +.+.... ...+++..++.|++|||++|.||++
T Consensus       146 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  178 (199)
T 4bas_A          146 -----------------------------------------------AELVEILDLTTLMGDHPFVIFASNGLKGTGVHE  178 (199)
T ss_dssp             -----------------------------------------------HHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHH
T ss_pred             -----------------------------------------------HHHHHHhcchhhccCCeeEEEEeeCCCccCHHH
Confidence                                                           0011111 1222355788999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy17467        241 LFMQIAAELMEKL  253 (730)
Q Consensus       241 LFe~Li~~l~e~~  253 (730)
                      +|++|++.+.+..
T Consensus       179 l~~~l~~~~~~~~  191 (199)
T 4bas_A          179 GFSWLQETASRQS  191 (199)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999886543

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.91  E-value=1.2e-23  Score=205.80  Aligned_cols=169  Identities=43%  Similarity=0.780  Sum_probs=145.7

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI   83 (730)
                      +++.+||+++|++|||||||++++++..+...+.|++|.++....+.+++..+.+.+||++|++.+..++..+++.+|++
T Consensus         2 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~   81 (199)
T 2f9l_A            2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA   81 (199)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             CcceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence            46679999999999999999999999999888889999899899999999999999999999999988899999999999


Q ss_pred             EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      ++|||+++..+|+++..|+..+....                               ..+.|+++++||+|+.+      
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------------------~~~~~i~~v~nK~Dl~~------  124 (199)
T 2f9l_A           82 LLVYDIAKHLTYENVERWLKELRDHA-------------------------------DSNIVIMLVGNKSDLRH------  124 (199)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHS-------------------------------CTTCEEEEEEECTTCGG------
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhc-------------------------------CCCCeEEEEEECccccc------
Confidence            99999999999999988988875432                               13567788888888853      


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM  243 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe  243 (730)
                                                                  .+.++.++++.++...++.+++|||+++.|++++|+
T Consensus       125 --------------------------------------------~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~  160 (199)
T 2f9l_A          125 --------------------------------------------LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFK  160 (199)
T ss_dssp             --------------------------------------------GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             --------------------------------------------ccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence                                                        134566789999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy17467        244 QIAAELMEKL  253 (730)
Q Consensus       244 ~Li~~l~e~~  253 (730)
                      .+.+.+.+..
T Consensus       161 ~l~~~~~~~~  170 (199)
T 2f9l_A          161 NILTEIYRIV  170 (199)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999886543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.91  E-value=1.8e-24  Score=203.32  Aligned_cols=164  Identities=22%  Similarity=0.321  Sum_probs=127.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      +..+||+++|++|||||||+++|+++.+.. +.||++.  ....+.+++  +.+.+|||||++.+...+..+++++|++|
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGF--NVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSE--EEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCcc--ceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            345899999999999999999999988754 5577763  345666665  78999999999999999999999999999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      +|||++++.+|+.+..|+..+....                              ..++.|+++|+||+|+.+....   
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilv~nK~Dl~~~~~~---  126 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLEEE------------------------------ELRKAILVVFANKQDMEQAMTS---  126 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCG------------------------------GGTTCEEEEEEECTTSTTCCCH---
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhch------------------------------hhCCCEEEEEEECCCCcCCCCH---
Confidence            9999999999999988888775432                              1156788899999998642100   


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~  244 (730)
                                                                  +.+....+...+...++++++|||++|.||+++|++
T Consensus       127 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (171)
T 1upt_A          127 --------------------------------------------SEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEW  162 (171)
T ss_dssp             --------------------------------------------HHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHH
T ss_pred             --------------------------------------------HHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHH
Confidence                                                        001111111223345678999999999999999999


Q ss_pred             HHHHHH
Q psy17467        245 IAAELM  250 (730)
Q Consensus       245 Li~~l~  250 (730)
                      +++.+.
T Consensus       163 l~~~i~  168 (171)
T 1upt_A          163 LVETLK  168 (171)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998773

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.91  E-value=7.4e-25  Score=211.75  Aligned_cols=165  Identities=24%  Similarity=0.408  Sum_probs=124.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCCcceeeEEEEEEEe---CCeEEEEEEEeCCCchhhhhhhHhhhcccc
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQG--VFPPGQGATIGVDFMIKTVEI---NNERIKLQIWDTAGQERFRSITQSYYRSAH   81 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~--~f~~~~~pTig~d~~~~~i~v---dg~~v~LqLwDTpG~e~~~sl~~~~~r~AD   81 (730)
                      .+||+|+|++|||||||+++|++.  .+...+.+|+|.++....+.+   ++..+.+++|||+|++++..++..+++++|
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            489999999999999999999985  455667789988887766654   345688999999999999999999999999


Q ss_pred             EEEEEeecCCC-CchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhH
Q psy17467         82 ALILVYDISCQ-PTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEH  160 (730)
Q Consensus        82 aIILVyDvtd~-eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~  160 (730)
                      ++++|||++++ .+|+.+..|+.++....                                ++.|+++||||+|+.+...
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--------------------------------~~~piilv~nK~Dl~~~~~  129 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--------------------------------SSSPVILVGTHLDVSDEKQ  129 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--------------------------------TTCEEEEEEECGGGCCHHH
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhC--------------------------------CCCcEEEEEECCCcccchh
Confidence            99999999998 58999999999886532                                4678889999999864321


Q ss_pred             HHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCe----EEEEecCCCC
Q psy17467        161 VLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMY----YLETSAKASD  236 (730)
Q Consensus       161 ~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~----fvEtSAktG~  236 (730)
                      ..                                               .+..+.++.+++.++++    |++|||++|.
T Consensus       130 ~~-----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (184)
T 2zej_A          130 RK-----------------------------------------------ACMSKITKELLNKRGFPAIRDYHFVNATEES  162 (184)
T ss_dssp             HH-----------------------------------------------HHHHHHHHHTTTCTTSCEEEEEEECCTTSCC
T ss_pred             hH-----------------------------------------------HHHHHHHHHHHHhcCCcchhheEEEecccCc
Confidence            00                                               01134566777778886    9999999996


Q ss_pred             -ChHHHHHHHHHHHH
Q psy17467        237 -NVEKLFMQIAAELM  250 (730)
Q Consensus       237 -GVeeLFe~Li~~l~  250 (730)
                       |++++++.|.+.+.
T Consensus       163 ~~~~~l~~~i~~~~~  177 (184)
T 2zej_A          163 DALAKLRKTIINESL  177 (184)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHh
Confidence             99999999988774

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.91  E-value=1.1e-24  Score=210.87  Aligned_cols=165  Identities=21%  Similarity=0.339  Sum_probs=128.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      +..+||+|+|++|||||||+++|+++.+...+.||++.++.  .+..++  +.+.+|||+|++++..++..+++++|++|
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIV   95 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCC--EEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence            45699999999999999999999999998888899886654  344444  88999999999999999999999999999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      +|||++++.+|+.+..|+..+....                              ...+.|+++|+||+|+.+....   
T Consensus        96 ~v~D~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilv~NK~Dl~~~~~~---  142 (188)
T 1zd9_A           96 YMVDAADQEKIEASKNELHNLLDKP------------------------------QLQGIPVLVLGNKRDLPGALDE---  142 (188)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCG------------------------------GGTTCCEEEEEECTTSTTCCCH---
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCc------------------------------ccCCCCEEEEEECCCCccCCCH---
Confidence            9999999999999999988875421                              1156788999999998631100   


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~  244 (730)
                                                                  +.+........+...++.+++|||++|.||+++|++
T Consensus       143 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~  178 (188)
T 1zd9_A          143 --------------------------------------------KELIEKMNLSAIQDREICCYSISCKEKDNIDITLQW  178 (188)
T ss_dssp             --------------------------------------------HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred             --------------------------------------------HHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHH
Confidence                                                        000000001111234568999999999999999999


Q ss_pred             HHHHHH
Q psy17467        245 IAAELM  250 (730)
Q Consensus       245 Li~~l~  250 (730)
                      |++.+.
T Consensus       179 l~~~~~  184 (188)
T 1zd9_A          179 LIQHSK  184 (188)
T ss_dssp             HHHTCC
T ss_pred             HHHHHH
Confidence            988764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.91  E-value=1e-23  Score=202.29  Aligned_cols=159  Identities=21%  Similarity=0.283  Sum_probs=127.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      +..+||+++|++|||||||+++++++. ...+.||++.  ....+.+++  +.+++|||||++++...+..+++++|++|
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~--~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGF--NIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSE--EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCcc--ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            456999999999999999999999888 6667788874  345666665  78999999999999999999999999999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      +|||++++.||+.+..|+..+....                              ..++.|+++|+||+|+.+..     
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilv~nK~Dl~~~~-----  135 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEE------------------------------RLAGATLLIFANKQDLPGAL-----  135 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCG------------------------------GGTTCEEEEEEECTTSTTCC-----
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhCh------------------------------hcCCCcEEEEEeCccCCCCC-----
Confidence            9999999999999999988875432                              12567888899999985311     


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHH-----HHhcCCeEEEEecCCCCChH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDF-----AKRHDMYYLETSAKASDNVE  239 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~l-----ak~lg~~fvEtSAktG~GVe  239 (730)
                                                                     ..++..+.     +...++++++|||++|.||+
T Consensus       136 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A          136 -----------------------------------------------SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             -----------------------------------------------CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             -----------------------------------------------CHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence                                                           11121111     12346789999999999999


Q ss_pred             HHHHHHHHHHH
Q psy17467        240 KLFMQIAAELM  250 (730)
Q Consensus       240 eLFe~Li~~l~  250 (730)
                      ++|+++.+.+.
T Consensus       169 ~l~~~l~~~i~  179 (186)
T 1ksh_A          169 PGIDWLLDDIS  179 (186)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998774

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.91  E-value=5.7e-24  Score=205.50  Aligned_cols=162  Identities=17%  Similarity=0.265  Sum_probs=129.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGV-FPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~-f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI   83 (730)
                      ...+||+|+|++|||||||+++|+++. +...+.+|++  +....+.+++  +.+.+|||+|++++..++..+++++|++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAI   94 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            356899999999999999999999887 5666778887  4556677776  7899999999999999999999999999


Q ss_pred             EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      |+|||++++.+|+.+..|+..+.....                            ....+.|+++|+||+|+.+      
T Consensus        95 i~v~d~~~~~s~~~~~~~~~~~~~~~~----------------------------~~~~~~piilv~nK~Dl~~------  140 (190)
T 2h57_A           95 IFVIDSSDRLRMVVAKEELDTLLNHPD----------------------------IKHRRIPILFFANKMDLRD------  140 (190)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHSTT----------------------------TTTSCCCEEEEEECTTSTT------
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhChh----------------------------hccCCCeEEEEEeCcCccc------
Confidence            999999999999999999988765321                            0114678888888888853      


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH-----hcCCeEEEEecCCCCCh
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK-----RHDMYYLETSAKASDNV  238 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak-----~lg~~fvEtSAktG~GV  238 (730)
                                                                    .+..++..+.+.     ..++.+++|||++|.||
T Consensus       141 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  174 (190)
T 2h57_A          141 ----------------------------------------------AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGL  174 (190)
T ss_dssp             ----------------------------------------------CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTH
T ss_pred             ----------------------------------------------CCCHHHHHHHhChhhccCCceEEEEccCCCCcCH
Confidence                                                          123344444432     23678999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy17467        239 EKLFMQIAAELM  250 (730)
Q Consensus       239 eeLFe~Li~~l~  250 (730)
                      +++|++|.+.+.
T Consensus       175 ~~l~~~l~~~i~  186 (190)
T 2h57_A          175 QEGVDWLQDQIQ  186 (190)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.91  E-value=1.5e-23  Score=219.00  Aligned_cols=174  Identities=26%  Similarity=0.465  Sum_probs=146.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      ..+||+++|++|||||||+++|+++.+...+.++++ +.....+.+++..+.+++|||+|++.+..++..+++++|++|+
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSE-EEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccc-ceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            458999999999999999999999999888888887 4446677889999999999999999999999999999999999


Q ss_pred             EeecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         86 VYDISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        86 VyDvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      |||++++.+|+++. .|+..+....                                ++.|+++|+||+|+.+.......
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~~--------------------------------~~~p~ilv~nK~Dl~~~~~~~~~  280 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHHC--------------------------------PNTPIILVGTKLDLRDDKDTIEK  280 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC--------------------------------TTSCEEEEEECHHHHTCHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhC--------------------------------CCCcEEEEEEchhcccccchhhh
Confidence            99999999999987 6888886543                                36789999999998643221100


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFM  243 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe  243 (730)
                      +                                      .+...+.++.+++.++++..++ +|++|||++|.||+++|+
T Consensus       281 ~--------------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  322 (332)
T 2wkq_A          281 L--------------------------------------KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD  322 (332)
T ss_dssp             H--------------------------------------HHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHH
T ss_pred             c--------------------------------------cccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHH
Confidence            0                                      0112367889999999999998 999999999999999999


Q ss_pred             HHHHHHH
Q psy17467        244 QIAAELM  250 (730)
Q Consensus       244 ~Li~~l~  250 (730)
                      .|++.+.
T Consensus       323 ~l~~~~~  329 (332)
T 2wkq_A          323 EAIRAVL  329 (332)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998774

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=5.3e-24  Score=205.22  Aligned_cols=157  Identities=22%  Similarity=0.317  Sum_probs=122.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      ..+||+++|++|||||||+++|+++.+. .+.||++..  ...+.+++  +.+++|||+|++++..++..+++++|++|+
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   89 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   89 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            4689999999999999999999998887 566777743  34556666  889999999999999999999999999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      |||++++.||+.+..|+..+....                              ...+.|+++|+||+|+.+.       
T Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilv~NK~Dl~~~-------  132 (187)
T 1zj6_A           90 VVDSTDRERISVTREELYKMLAHE------------------------------DLRKAGLLIFANKQDVKEC-------  132 (187)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTSG------------------------------GGTTCEEEEEEECTTSTTC-------
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhch------------------------------hhCCCeEEEEEECCCCcCC-------
Confidence            999999999999999998876532                              1146788888899988531       


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHH-----HhcCCeEEEEecCCCCChHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFA-----KRHDMYYLETSAKASDNVEK  240 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~la-----k~lg~~fvEtSAktG~GVee  240 (730)
                                                                   ...++..+..     +..++.+++|||++|.||++
T Consensus       133 ---------------------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  167 (187)
T 1zj6_A          133 ---------------------------------------------MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQ  167 (187)
T ss_dssp             ---------------------------------------------CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             ---------------------------------------------CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHH
Confidence                                                         1222222221     23467899999999999999


Q ss_pred             HHHHHHHHH
Q psy17467        241 LFMQIAAEL  249 (730)
Q Consensus       241 LFe~Li~~l  249 (730)
                      +|++|++.+
T Consensus       168 l~~~l~~~~  176 (187)
T 1zj6_A          168 GLEWMMSRL  176 (187)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999877

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.91  E-value=7.2e-25  Score=213.91  Aligned_cols=168  Identities=22%  Similarity=0.309  Sum_probs=124.8

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEE--e-CCeEEEEEEEeCCCchhhhhhh---Hhh
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVE--I-NNERIKLQIWDTAGQERFRSIT---QSY   76 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~--v-dg~~v~LqLwDTpG~e~~~sl~---~~~   76 (730)
                      ..+..+||+++|++|||||||++++.+. +...  ++.+.++....+.  + ++..+.+++|||+|++++....   ..+
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   92 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI   92 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence            3456799999999999999999988764 3333  4444444333333  3 2566889999999999987766   899


Q ss_pred             hccccEEEEEeecCCC--CchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCC
Q psy17467         77 YRSAHALILVYDISCQ--PTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTD  154 (730)
Q Consensus        77 ~r~ADaIILVyDvtd~--eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~D  154 (730)
                      ++++|++|+|||++++  ++++.+..|+.++...                                .++.|+++||||+|
T Consensus        93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--------------------------------~~~~piilv~nK~D  140 (196)
T 3llu_A           93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV--------------------------------NPDMNFEVFIHKVD  140 (196)
T ss_dssp             HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--------------------------------CTTCEEEEEEECGG
T ss_pred             cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--------------------------------CCCCcEEEEEeccc
Confidence            9999999999999998  4455555566655332                                25789999999999


Q ss_pred             cchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH----hcCCeEEEE
Q psy17467        155 LDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK----RHDMYYLET  230 (730)
Q Consensus       155 L~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak----~lg~~fvEt  230 (730)
                      +.+++....                                           ..+.+..++++++++    ..++.|++|
T Consensus       141 l~~~~~~~~-------------------------------------------~~~~v~~~~~~~~~~~~~~~~~~~~~e~  177 (196)
T 3llu_A          141 GLSDDHKIE-------------------------------------------TQRDIHQRANDDLADAGLEKLHLSFYLT  177 (196)
T ss_dssp             GSCHHHHHH-------------------------------------------HHHHHHHHHHHHHHHTTCTTSCEEEEEE
T ss_pred             cCchhhhhH-------------------------------------------HHhHHHHHHHHHHHHhhhhcCCcceEEE
Confidence            876432110                                           124566678888888    778999999


Q ss_pred             ecCCCCChHHHHHHHHHHH
Q psy17467        231 SAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       231 SAktG~GVeeLFe~Li~~l  249 (730)
                      ||++ .||+++|+.+++.+
T Consensus       178 Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          178 SIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             CTTS-THHHHHHHHHHHHT
T ss_pred             Eech-hhHHHHHHHHHHHh
Confidence            9999 99999999998764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.91  E-value=7.8e-24  Score=206.25  Aligned_cols=155  Identities=15%  Similarity=0.182  Sum_probs=124.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      ..+||+++|++|||||||+++|.++.+. .+.||++.  ....+.+++  +.+++|||||++++..++..+++++|++|+
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   96 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF   96 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            3579999999999999999999998875 45577774  356777787  889999999999999999999999999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      |||++++.||+.+..|+..+.+..                              ...+.|+++|+||+|+.+.       
T Consensus        97 v~d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilv~NK~Dl~~~-------  139 (190)
T 1m2o_B           97 LVDAADPERFDEARVELDALFNIA------------------------------ELKDVPFVILGNKIDAPNA-------  139 (190)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCG------------------------------GGTTCCEEEEEECTTSTTC-------
T ss_pred             EEECCChHHHHHHHHHHHHHHcch------------------------------hhcCCCEEEEEECCCCcCC-------
Confidence            999999999999999998875432                              1256788899999998531       


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHH------------HHhcCCeEEEEecC
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDF------------AKRHDMYYLETSAK  233 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~l------------ak~lg~~fvEtSAk  233 (730)
                                                                   ++.+++.+.            +...+++|++|||+
T Consensus       140 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  174 (190)
T 1m2o_B          140 ---------------------------------------------VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVV  174 (190)
T ss_dssp             ---------------------------------------------CCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTT
T ss_pred             ---------------------------------------------CCHHHHHHHhCCccccccccccccceEEEEEeECC
Confidence                                                         122222222            23346789999999


Q ss_pred             CCCChHHHHHHHHH
Q psy17467        234 ASDNVEKLFMQIAA  247 (730)
Q Consensus       234 tG~GVeeLFe~Li~  247 (730)
                      +|.||+++|++|.+
T Consensus       175 ~g~gi~~l~~~l~~  188 (190)
T 1m2o_B          175 MRNGYLEAFQWLSQ  188 (190)
T ss_dssp             TTBSHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHh
Confidence            99999999999875

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.91  E-value=5.4e-24  Score=205.49  Aligned_cols=160  Identities=22%  Similarity=0.298  Sum_probs=124.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      +..+||+++|++|||||||+++|.++.+. .+.||+|.  ....+.+++  +.+++|||+|++.+...+..+++++|++|
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF--NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTE--EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCe--EEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            45699999999999999999999987653 45577773  345666665  78999999999999999999999999999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      +|||++++.+|+.+..|+.++....                              ...+.|+++|+||+|+.+..     
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilv~NK~Dl~~~~-----  133 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEE------------------------------KLSCVPVLIFANKQDLLTAA-----  133 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCG------------------------------GGTTCCEEEEEECTTSTTCC-----
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhCh------------------------------hhcCCCEEEEEECcCcccCC-----
Confidence            9999999999999998888764321                              12567888999999985311     


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHH-----HHhcCCeEEEEecCCCCChH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDF-----AKRHDMYYLETSAKASDNVE  239 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~l-----ak~lg~~fvEtSAktG~GVe  239 (730)
                                                                     ..++..+.     +...++.+++|||++|.||+
T Consensus       134 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A          134 -----------------------------------------------PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             -----------------------------------------------CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             -----------------------------------------------CHHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence                                                           11111111     12345689999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy17467        240 KLFMQIAAELME  251 (730)
Q Consensus       240 eLFe~Li~~l~e  251 (730)
                      ++|+++++.+.+
T Consensus       167 ~l~~~l~~~~~~  178 (181)
T 1fzq_A          167 DGMNWVCKNVNA  178 (181)
T ss_dssp             HHHHHHHHTC--
T ss_pred             HHHHHHHHHHHh
Confidence            999999987743

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.84  E-value=5.8e-26  Score=222.30  Aligned_cols=174  Identities=25%  Similarity=0.457  Sum_probs=141.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      ...+||+|+|++|||||||+++|+++.+...+.++++ +.....+.+++..+.+++|||||++++..++..+++++|++|
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            3569999999999999999999999988887778876 444566777888889999999999999999999999999999


Q ss_pred             EEeecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         85 LVYDISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        85 LVyDvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      +|||++++.+|+.+. .|+..+....                                ++.|+++|+||+|+.+......
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~--------------------------------~~~piilv~NK~Dl~~~~~~~~  154 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHC--------------------------------PNTPIILVGTKLDLRDDKDTIE  154 (204)
Confidence            999999999999987 6877765432                                3678999999999964321000


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLF  242 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLF  242 (730)
                                                            ...+...+.+..+++.++++..++ ++++|||++|.||+++|
T Consensus       155 --------------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~  196 (204)
T 3th5_A          155 --------------------------------------KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF  196 (204)
Confidence                                                  000111245677888999999998 89999999999999999


Q ss_pred             HHHHHHH
Q psy17467        243 MQIAAEL  249 (730)
Q Consensus       243 e~Li~~l  249 (730)
                      +.|++.+
T Consensus       197 ~~l~~~i  203 (204)
T 3th5_A          197 DEAIRAV  203 (204)
Confidence            9998765

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.90  E-value=6e-23  Score=200.45  Aligned_cols=166  Identities=43%  Similarity=0.786  Sum_probs=145.8

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      ++++.+||+|+|++|||||||++++.+..+...+.||++.++....+.+++..+.+++||++|.+++..++..+++.+++
T Consensus        25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~  104 (191)
T 1oix_A           25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG  104 (191)
T ss_dssp             CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence            45678999999999999999999999999988889999999999999999999999999999999998899999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +++|||+++..+|+++..|+..+....                               ..+.|+++++||+|+.+     
T Consensus       105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------------------~~~~~i~~v~nK~Dl~~-----  148 (191)
T 1oix_A          105 ALLVYDIAKHLTYENVERWLKELRDHA-------------------------------DSNIVIMLVGNKSDLRH-----  148 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHS-------------------------------CTTCEEEEEEECGGGGG-----
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhc-------------------------------CCCCcEEEEEECccccc-----
Confidence            999999999999999988988775432                               13567778888888752     


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF  242 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF  242 (730)
                                                                   .+.+..++++.++...++.+++|||+++.|++++|
T Consensus       149 ---------------------------------------------~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~  183 (191)
T 1oix_A          149 ---------------------------------------------LRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF  183 (191)
T ss_dssp             ---------------------------------------------GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             ---------------------------------------------ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence                                                         13456788999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy17467        243 MQIAAEL  249 (730)
Q Consensus       243 e~Li~~l  249 (730)
                      +.+.+.+
T Consensus       184 ~~l~~~i  190 (191)
T 1oix_A          184 QTILTEI  190 (191)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998764

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.90  E-value=1.4e-24  Score=211.83  Aligned_cols=162  Identities=23%  Similarity=0.369  Sum_probs=120.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      ..+||+|+|++|||||||+++|+++.+.. +.||++  +....+..++  +.+.+|||||++++..++..+++++|++|+
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil  102 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLIF  102 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            45899999999999999999999888763 457776  4445566665  889999999999999999999999999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      |||++++.+|+.+..|+..+....                              ..++.|+++|+||+|+.+....    
T Consensus       103 v~D~~~~~s~~~~~~~l~~~~~~~------------------------------~~~~~piilv~NK~Dl~~~~~~----  148 (192)
T 2b6h_A          103 VVDSNDRERVQESADELQKMLQED------------------------------ELRDAVLLVFANKQDMPNAMPV----  148 (192)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCG------------------------------GGTTCEEEEEEECTTSTTCCCH----
T ss_pred             EEECCCHHHHHHHHHHHHHHhccc------------------------------ccCCCeEEEEEECCCCCCCCCH----
Confidence            999999999999999988875422                              1146788899999998532100    


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L  245 (730)
                                                                 +.+..+.+...+...++++++|||++|.||+++|++|
T Consensus       149 -------------------------------------------~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l  185 (192)
T 2b6h_A          149 -------------------------------------------SELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWL  185 (192)
T ss_dssp             -------------------------------------------HHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHH
T ss_pred             -------------------------------------------HHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHH
Confidence                                                       0011111111222345689999999999999999999


Q ss_pred             HHHH
Q psy17467        246 AAEL  249 (730)
Q Consensus       246 i~~l  249 (730)
                      ++.+
T Consensus       186 ~~~i  189 (192)
T 2b6h_A          186 SHEL  189 (192)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            8876

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.90  E-value=9.3e-24  Score=202.85  Aligned_cols=157  Identities=22%  Similarity=0.303  Sum_probs=123.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      ...+||+|+|++|||||||+++|+++.+ ..+.++++...  ..+.+++  +.+.+|||+|++++..++..+++++|++|
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   93 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   93 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            3568999999999999999999999988 45567777443  4556666  88999999999999999999999999999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      +|||++++.+|+.+..|+..+....                              ...+.|+++|+||+|+.+.      
T Consensus        94 ~v~D~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilv~NK~Dl~~~------  137 (181)
T 2h17_A           94 VVVDSTDRERISVTREELYKMLAHE------------------------------DLRKAGLLIFANKQDVKEC------  137 (181)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTCG------------------------------GGTTCEEEEEEECTTSTTC------
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCh------------------------------hhCCCeEEEEEECCCcccC------
Confidence            9999999999999999988875431                              1256788888999998531      


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHH-----HHhcCCeEEEEecCCCCChH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDF-----AKRHDMYYLETSAKASDNVE  239 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~l-----ak~lg~~fvEtSAktG~GVe  239 (730)
                                                                    ...++..+.     +...++.+++|||++|.||+
T Consensus       138 ----------------------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  171 (181)
T 2h17_A          138 ----------------------------------------------MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  171 (181)
T ss_dssp             ----------------------------------------------CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             ----------------------------------------------CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence                                                          111222211     12346689999999999999


Q ss_pred             HHHHHHHHH
Q psy17467        240 KLFMQIAAE  248 (730)
Q Consensus       240 eLFe~Li~~  248 (730)
                      ++|++|++.
T Consensus       172 ~l~~~l~~~  180 (181)
T 2h17_A          172 QGLEWMMSR  180 (181)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHhh
Confidence            999998753

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.90  E-value=1.4e-23  Score=206.06  Aligned_cols=156  Identities=15%  Similarity=0.159  Sum_probs=117.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      ..+||+++|++|||||||+++|.++.+. .+.||++.+  ...+.+++  +.+++|||||++++..++..+++++|++|+
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   98 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence            3579999999999999999999988875 455777654  35667777  889999999999999999999999999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      |||++++.+|+.+..|+.++.+..                              ...+.|+++||||+|+.+        
T Consensus        99 v~D~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilv~NK~Dl~~--------  140 (198)
T 1f6b_A           99 LVDCADHERLLESKEELDSLMTDE------------------------------TIANVPILILGNKIDRPE--------  140 (198)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCG------------------------------GGTTSCEEEEEECTTSTT--------
T ss_pred             EEECCCHHHHHHHHHHHHHHHhCc------------------------------ccCCCcEEEEEECCCccc--------
Confidence            999999999999999998876432                              114678888889888853        


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH-----------------hcCCeEE
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK-----------------RHDMYYL  228 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak-----------------~lg~~fv  228 (730)
                                                                  .++.+++++++.                 ..++.++
T Consensus       141 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (198)
T 1f6b_A          141 --------------------------------------------AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVF  176 (198)
T ss_dssp             --------------------------------------------CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEE
T ss_pred             --------------------------------------------cCCHHHHHHHhCcccccccccccccccccCceEEEE
Confidence                                                        122333333332                 1356899


Q ss_pred             EEecCCCCChHHHHHHHHHH
Q psy17467        229 ETSAKASDNVEKLFMQIAAE  248 (730)
Q Consensus       229 EtSAktG~GVeeLFe~Li~~  248 (730)
                      +|||++|.||+++|++|.+.
T Consensus       177 ~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          177 MCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             ECBTTTTBSHHHHHHHHHTT
T ss_pred             EEECCCCCCHHHHHHHHHHh
Confidence            99999999999999999754

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.90  E-value=1.3e-23  Score=200.37  Aligned_cols=161  Identities=20%  Similarity=0.303  Sum_probs=123.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      +..+||+++|++|||||||+++++++.+ ..+.||++..  ...+.+++  +.+.+|||||++++...+..+++++|++|
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            4569999999999999999999998877 4566787743  45566666  88999999999999999999999999999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      +|||++++.+|+.+..|+..+....                              ...+.|+++|+||+|+.+.      
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilv~nK~Dl~~~------  134 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEE------------------------------ELQDAALLVFANKQDQPGA------  134 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSS------------------------------TTSSCEEEEEEECTTSTTC------
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcCh------------------------------hhCCCeEEEEEECCCCCCC------
Confidence            9999999999999999988875421                              1257888999999998531      


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHH-----HhcCCeEEEEecCCCCChH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFA-----KRHDMYYLETSAKASDNVE  239 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~la-----k~lg~~fvEtSAktG~GVe  239 (730)
                                                                    ...++..+..     ...++++++|||++|.||+
T Consensus       135 ----------------------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A          135 ----------------------------------------------LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             ----------------------------------------------CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             ----------------------------------------------CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence                                                          1112221111     1235689999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy17467        240 KLFMQIAAELMEK  252 (730)
Q Consensus       240 eLFe~Li~~l~e~  252 (730)
                      ++|+++.+.+.++
T Consensus       169 ~l~~~l~~~~~~~  181 (183)
T 1moz_A          169 EGLDWLIDVIKEE  181 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988543

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.90  E-value=2.6e-24  Score=207.40  Aligned_cols=165  Identities=21%  Similarity=0.311  Sum_probs=126.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      +..+||+++|++|||||||+++|+++.+.. +.||++.  ....+.+++  +.+.+|||||++++...+..+++++|++|
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGV--NLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTC--CEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCce--EEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            456999999999999999999999888754 5577773  344566665  78999999999999999999999999999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      +|||++++.+|+.+..|+..+....                              ..++.|+++|+||+|+.+....   
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilv~nK~Dl~~~~~~---  141 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDED------------------------------ELRKSLLLIFANKQDLPDAASE---  141 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCS------------------------------TTTTCEEEEEEECTTSTTCCCH---
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhh------------------------------hcCCCeEEEEEECCCCcCCCCH---
Confidence            9999999999999988888775421                              1256789999999998642100   


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~  244 (730)
                                                                  +.+....+...+...++++++|||++|.||+++|++
T Consensus       142 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  177 (189)
T 2x77_A          142 --------------------------------------------AEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDW  177 (189)
T ss_dssp             --------------------------------------------HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred             --------------------------------------------HHHHHHhChhhccCCceEEEEccCCCccCHHHHHHH
Confidence                                                        000111111122344678999999999999999999


Q ss_pred             HHHHHHH
Q psy17467        245 IAAELME  251 (730)
Q Consensus       245 Li~~l~e  251 (730)
                      +.+.+.+
T Consensus       178 l~~~i~~  184 (189)
T 2x77_A          178 LVERLRE  184 (189)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988743

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.89  E-value=1.2e-23  Score=207.01  Aligned_cols=200  Identities=20%  Similarity=0.225  Sum_probs=122.6

Q ss_pred             CCCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe-EEEEEEEeCCCchhhhh-hhHhhhc
Q psy17467          1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE-RIKLQIWDTAGQERFRS-ITQSYYR   78 (730)
Q Consensus         1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~-~v~LqLwDTpG~e~~~s-l~~~~~r   78 (730)
                      |......+||+++|++|||||||+++|+++.+...+.+ ++.++..  +.+++. .+.+++|||||++++.. ++..+++
T Consensus         1 m~~~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   77 (214)
T 2fh5_B            1 MARKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKS   77 (214)
T ss_dssp             -------CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGG
T ss_pred             CCCCCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHh
Confidence            55566779999999999999999999999998877744 4434433  666644 58899999999999988 8889999


Q ss_pred             cccEEEEEeecCCCC-chhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467         79 SAHALILVYDISCQP-TFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE  157 (730)
Q Consensus        79 ~ADaIILVyDvtd~e-Sfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~  157 (730)
                      ++|++|+|||+++.. ++..+..|+..+....                            ....++.|+++|+||+|+.+
T Consensus        78 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~piilv~nK~Dl~~  129 (214)
T 2fh5_B           78 SARAVVFVVDSAAFQREVKDVAEFLYQVLIDS----------------------------MALKNSPSLLIACNKQDIAM  129 (214)
T ss_dssp             GEEEEEEEEETTTHHHHHHHHHHHHHHHHHHH----------------------------HTSTTCCEEEEEEECTTSTT
T ss_pred             hCCEEEEEEECCCcCHHHHHHHHHHHHHHhhh----------------------------hhcccCCCEEEEEECCCCCC
Confidence            999999999999843 4555555444433221                            01235789999999999975


Q ss_pred             hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCcccccccc-ccccCCCCChHHHHHHHHhc---CCeEEEEecC
Q psy17467        158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNK-IDREDREIPTEVGEDFAKRH---DMYYLETSAK  233 (730)
Q Consensus       158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK-~DL~~R~Vs~ee~~~lak~l---g~~fvEtSAk  233 (730)
                      ...........  ...++....               .+...+..+ .+...+.+..++++.++...   ++.|+||||+
T Consensus       130 ~~~~~~~~~~l--~~~l~~~~~---------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk  192 (214)
T 2fh5_B          130 AKSAKLIQQQL--EKELNTLRV---------------TRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAK  192 (214)
T ss_dssp             CCCHHHHHHHH--HHHHHHHHH---------------HCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC
T ss_pred             cccHHHHHHHH--HHHHHHHhc---------------cchhccccccCCccccccccCCCCCcccccCCCcEEEEEeecc
Confidence            42110000000  000000000               000000000 00011334444555566543   7789999999


Q ss_pred             CC------CChHHHHHHHHHH
Q psy17467        234 AS------DNVEKLFMQIAAE  248 (730)
Q Consensus       234 tG------~GVeeLFe~Li~~  248 (730)
                      +|      .||+++|++|.+.
T Consensus       193 ~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          193 GGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             -------CCBCHHHHHHHHHH
T ss_pred             CCCccccccChHHHHHHHHHh
Confidence            99      9999999999864

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.89  E-value=6.7e-23  Score=194.68  Aligned_cols=153  Identities=20%  Similarity=0.217  Sum_probs=116.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh------hhhHhhhc--
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR------SITQSYYR--   78 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~------sl~~~~~r--   78 (730)
                      .++|+++|++|||||||+++|++..+...+.|+.+.+.....+.+++  ..+++|||||+.++.      .+...+++  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            47999999999999999999999887766667777677677777777  679999999998764      34466665  


Q ss_pred             cccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchh
Q psy17467         79 SAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDED  158 (730)
Q Consensus        79 ~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~  158 (730)
                      ++|++++|+|+++   ++....|+.++..                                  .+.|+++|+||+|+.+.
T Consensus        81 ~~~~~i~v~D~~~---~~~~~~~~~~~~~----------------------------------~~~p~ilv~nK~Dl~~~  123 (165)
T 2wji_A           81 KPDLVVNIVDATA---LERNLYLTLQLME----------------------------------MGANLLLALNKMDLAKS  123 (165)
T ss_dssp             CCSEEEEEEETTC---HHHHHHHHHHHHH----------------------------------TTCCEEEEEECHHHHHH
T ss_pred             CCCEEEEEecCCc---hhHhHHHHHHHHh----------------------------------cCCCEEEEEEchHhccc
Confidence            8999999999987   3444557666532                                  24678888888887531


Q ss_pred             hHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCCh
Q psy17467        159 EHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNV  238 (730)
Q Consensus       159 e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GV  238 (730)
                                                                        +.+.. +++++++.+++++++|||++|.||
T Consensus       124 --------------------------------------------------~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v  152 (165)
T 2wji_A          124 --------------------------------------------------LGIEI-DVDKLEKILGVKVVPLSAAKKMGI  152 (165)
T ss_dssp             --------------------------------------------------TTCCC-CHHHHHHHHTSCEEECBGGGTBSH
T ss_pred             --------------------------------------------------cChhh-HHHHHHHHhCCCEEEEEcCCCCCH
Confidence                                                              12222 467888888999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy17467        239 EKLFMQIAAEL  249 (730)
Q Consensus       239 eeLFe~Li~~l  249 (730)
                      +++|+++.+.+
T Consensus       153 ~~l~~~l~~~~  163 (165)
T 2wji_A          153 EELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.88  E-value=2e-23  Score=214.52  Aligned_cols=164  Identities=22%  Similarity=0.344  Sum_probs=124.1

Q ss_pred             CcceeEEEEEcCC---------CCCHHHHHHHHHc---CCCCCCCCCcc-eeeEEEEEEE--------------eCCeEE
Q psy17467          4 YKFLFKVVLVGNA---------GVGKTCLVRRFTQ---GVFPPGQGATI-GVDFMIKTVE--------------INNERI   56 (730)
Q Consensus         4 ~~~~iKIvVLG~p---------nVGKSSLLnrLl~---~~f~~~~~pTi-g~d~~~~~i~--------------vdg~~v   56 (730)
                      .+..+||+|+|++         |||||||+++|++   ..+...+.|++ +.++..+.+.              +++..+
T Consensus        16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   95 (255)
T 3c5h_A           16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC   95 (255)
T ss_dssp             CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred             CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence            4567999999999         9999999999999   56766676765 4444333222              466778


Q ss_pred             EEEEEe-----------------------CCCchhhhhhhHhhhc---------------------cccEEEEEeecCCC
Q psy17467         57 KLQIWD-----------------------TAGQERFRSITQSYYR---------------------SAHALILVYDISCQ   92 (730)
Q Consensus        57 ~LqLwD-----------------------TpG~e~~~sl~~~~~r---------------------~ADaIILVyDvtd~   92 (730)
                      .++|||                       ++|++++..++..+++                     +||++|+|||++++
T Consensus        96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~  175 (255)
T 3c5h_A           96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG  175 (255)
T ss_dssp             CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred             EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence            999999                       6677777777777777                     89999999999998


Q ss_pred             --CchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhh
Q psy17467         93 --PTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFV  170 (730)
Q Consensus        93 --eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~  170 (730)
                        .||+.+..|+.++.....                              .++.|+++||||+|+.+.            
T Consensus       176 ~~~s~~~~~~~l~~i~~~~~------------------------------~~~~piilV~NK~Dl~~~------------  213 (255)
T 3c5h_A          176 MNRNFDDQLKFVSNLYNQLA------------------------------KTKKPIVVVLTKCDEGVE------------  213 (255)
T ss_dssp             ---CHHHHHHHHHHHHHHHH------------------------------HTTCCEEEEEECGGGBCH------------
T ss_pred             chhhHHHHHHHHHHHHHHhc------------------------------cCCCCEEEEEEccccccc------------
Confidence              999999999999876420                              145788888888888532            


Q ss_pred             hhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHh-cCCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467        171 AVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR-HDMYYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       171 a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~-lg~~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                                                            +.+  ++++++++. .+++|++|||++|.||+++|++|++.+
T Consensus       214 --------------------------------------~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l  253 (255)
T 3c5h_A          214 --------------------------------------RYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI  253 (255)
T ss_dssp             --------------------------------------HHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             --------------------------------------HHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence                                                  112  467778876 488999999999999999999998876

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.87  E-value=2.1e-21  Score=194.33  Aligned_cols=165  Identities=15%  Similarity=0.156  Sum_probs=118.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCc------hh----hhhhhHh
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ------ER----FRSITQS   75 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~------e~----~~sl~~~   75 (730)
                      ..+||+|+|++|||||||+++|+++.+.....+..+.+.....+.+++  +.+.||||||.      +.    +.. ...
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~-~~~  104 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT-ITA  104 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH-HHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH-HHH
Confidence            468999999999999999999999887644444444445555555565  77999999998      32    222 234


Q ss_pred             hhccccEEEEEeecCCCCchhhh--HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCC
Q psy17467         76 YYRSAHALILVYDISCQPTFDCL--TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKT  153 (730)
Q Consensus        76 ~~r~ADaIILVyDvtd~eSfe~L--~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~  153 (730)
                      ++..+|++|+|||++++.+|+..  ..|+..+...                                .++.|+++|+||+
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--------------------------------~~~~piilv~nK~  152 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--------------------------------FSNKSIVIGFNKI  152 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--------------------------------C-CCCEEEEEECG
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHh--------------------------------hcCCcEEEEEeCc
Confidence            57889999999999999998732  2344444321                                1467888888988


Q ss_pred             CcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChH---HHHHHHHhcC--CeEE
Q psy17467        154 DLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTE---VGEDFAKRHD--MYYL  228 (730)
Q Consensus       154 DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~e---e~~~lak~lg--~~fv  228 (730)
                      |+.+.                                                  +.+..+   .++.++...+  +.++
T Consensus       153 Dl~~~--------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  182 (228)
T 2qu8_A          153 DKCNM--------------------------------------------------DSLSIDNKLLIKQILDNVKNPIKFS  182 (228)
T ss_dssp             GGCC----------------------------------------------------CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred             ccCCc--------------------------------------------------hhhHHHHHHHHHHHHHhcCCCceEE
Confidence            88531                                                  223332   5667777777  8999


Q ss_pred             EEecCCCCChHHHHHHHHHHHHHHHHH
Q psy17467        229 ETSAKASDNVEKLFMQIAAELMEKLAE  255 (730)
Q Consensus       229 EtSAktG~GVeeLFe~Li~~l~e~~~~  255 (730)
                      +|||++|.||+++|++|++.+.+....
T Consensus       183 ~~SA~~g~gi~~l~~~l~~~i~~~~~~  209 (228)
T 2qu8_A          183 SFSTLTGVGVEQAKITACELLKNDQAE  209 (228)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998766544

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.86  E-value=1.1e-21  Score=188.08  Aligned_cols=155  Identities=19%  Similarity=0.200  Sum_probs=124.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh------hhhHhhhc-
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR------SITQSYYR-   78 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~------sl~~~~~r-   78 (730)
                      ..+||+++|++|||||||+++|++..+...+.|+++.+.....+.+++  ..+.+|||||++.+.      .++..+++ 
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   83 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   83 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence            458999999999999999999999877666667777777788888877  789999999998764      45666665 


Q ss_pred             -cccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467         79 -SAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE  157 (730)
Q Consensus        79 -~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~  157 (730)
                       .+|++++|+|.++   ++....|+..+..                                  .+.|+++|+||+|+..
T Consensus        84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~----------------------------------~~~piilv~nK~Dl~~  126 (188)
T 2wjg_A           84 EKPDLVVNIVDATA---LERNLYLTLQLME----------------------------------MGANLLLALNKMDLAK  126 (188)
T ss_dssp             HCCSEEEEEEEGGG---HHHHHHHHHHHHT----------------------------------TTCCEEEEEECHHHHH
T ss_pred             cCCCEEEEEecchh---HHHHHHHHHHHHh----------------------------------cCCCEEEEEEhhhccc
Confidence             4999999999875   6666677766532                                  3567888888888753


Q ss_pred             hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCC
Q psy17467        158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDN  237 (730)
Q Consensus       158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~G  237 (730)
                      .                                                  +.+. ++++++++.+++++++|||++|.|
T Consensus       127 ~--------------------------------------------------~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~  155 (188)
T 2wjg_A          127 S--------------------------------------------------LGIE-IDVDKLEKILGVKVVPLSAAKKMG  155 (188)
T ss_dssp             H--------------------------------------------------TTCC-CCHHHHHHHHTSCEEECBGGGTBS
T ss_pred             c--------------------------------------------------ccch-HHHHHHHHHhCCCeEEEEecCCCC
Confidence            1                                                  1122 356788888899999999999999


Q ss_pred             hHHHHHHHHHHHH
Q psy17467        238 VEKLFMQIAAELM  250 (730)
Q Consensus       238 VeeLFe~Li~~l~  250 (730)
                      |+++|+.+++.+.
T Consensus       156 v~~l~~~i~~~~~  168 (188)
T 2wjg_A          156 IEELKKAISIAVK  168 (188)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998774

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.86  E-value=1.5e-21  Score=184.93  Aligned_cols=167  Identities=17%  Similarity=0.152  Sum_probs=121.6

Q ss_pred             CCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhcccc
Q psy17467          2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAH   81 (730)
Q Consensus         2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~AD   81 (730)
                      ...+..++|+++|++|||||||+++|+++.+...+.++++.++....+.+++  ..+.+|||||++++..++..++..+|
T Consensus         3 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d   80 (178)
T 2lkc_A            3 HMVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTD   80 (178)
T ss_dssp             TTCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCC
T ss_pred             CcCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCC
Confidence            3445678999999999999999999999998887777777677677778888  45789999999999999989999999


Q ss_pred             EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467         82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV  161 (730)
Q Consensus        82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~  161 (730)
                      ++|+|||++++...+    +++.+....                               ..+.|+++|+||+|+.+....
T Consensus        81 ~~i~v~d~~~~~~~~----~~~~l~~~~-------------------------------~~~~p~ilv~nK~Dl~~~~~~  125 (178)
T 2lkc_A           81 IVILVVAADDGVMPQ----TVEAINHAK-------------------------------AANVPIIVAINKMDKPEANPD  125 (178)
T ss_dssp             EEEEEEETTCCCCHH----HHHHHHHHG-------------------------------GGSCCEEEEEETTTSSCSCHH
T ss_pred             EEEEEEECCCCCcHH----HHHHHHHHH-------------------------------hCCCCEEEEEECccCCcCCHH
Confidence            999999999864332    223332211                               146788999999998642100


Q ss_pred             HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC--CeEEEEecCCCCChH
Q psy17467        162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD--MYYLETSAKASDNVE  239 (730)
Q Consensus       162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg--~~fvEtSAktG~GVe  239 (730)
                      .  .                    .               ..  +       ++...++..++  +++++|||++|.||+
T Consensus       126 ~--~--------------------~---------------~~--~-------~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  159 (178)
T 2lkc_A          126 R--V--------------------M---------------QE--L-------MEYNLVPEEWGGDTIFCKLSAKTKEGLD  159 (178)
T ss_dssp             H--H--------------------H---------------HH--H-------TTTTCCBTTTTSSEEEEECCSSSSHHHH
T ss_pred             H--H--------------------H---------------HH--H-------HhcCcChhHcCCcccEEEEecCCCCCHH
Confidence            0  0                    0               00  0       00001122233  689999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy17467        240 KLFMQIAAELME  251 (730)
Q Consensus       240 eLFe~Li~~l~e  251 (730)
                      ++|++|++.+..
T Consensus       160 ~l~~~l~~~~~~  171 (178)
T 2lkc_A          160 HLLEMILLVSEM  171 (178)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhh
Confidence            999999987743

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.86  E-value=1.8e-21  Score=205.69  Aligned_cols=166  Identities=19%  Similarity=0.286  Sum_probs=129.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCC---CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhh-----hhhhHhhhc
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFP---PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERF-----RSITQSYYR   78 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~---~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~-----~sl~~~~~r   78 (730)
                      .+||+++|++|||||||+++|+++...   ..+.+|++.++.  .+.+++ .+.+++|||||++++     ..++..+++
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   79 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ   79 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence            589999999999999999999987332   235566665444  455544 588999999999988     678889999


Q ss_pred             cccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchh
Q psy17467         79 SAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDED  158 (730)
Q Consensus        79 ~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~  158 (730)
                      ++|++|+|||++++.+|+++..|...+.....                             ..++.|+++||||+|+.+.
T Consensus        80 ~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~-----------------------------~~~~~piilv~NK~Dl~~~  130 (307)
T 3r7w_A           80 MVQVLIHVFDVESTEVLKDIEIFAKALKQLRK-----------------------------YSPDAKIFVLLHKMDLVQL  130 (307)
T ss_dssp             TCSEEEEEEETTCSCHHHHHHHHHHHHHHHHH-----------------------------HCTTCEEEEEEECGGGSCH
T ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHHHHHH-----------------------------hCCCCeEEEEEecccccch
Confidence            99999999999999999999888776654321                             1267899999999999753


Q ss_pred             hHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC---CeEEEEecCCC
Q psy17467        159 EHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD---MYYLETSAKAS  235 (730)
Q Consensus       159 e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg---~~fvEtSAktG  235 (730)
                      +.....                                            ..+..++++++++.+|   ++|++|||++ 
T Consensus       131 ~~r~~~--------------------------------------------~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-  165 (307)
T 3r7w_A          131 DKREEL--------------------------------------------FQIMMKNLSETSSEFGFPNLIGFPTSIWD-  165 (307)
T ss_dssp             HHHHHH--------------------------------------------HHHHHHHHHHHHHTTTCCSCEEEECCTTS-
T ss_pred             hhhhHH--------------------------------------------HHHHHHHHHHHHHHcCCCCeEEEEeeecC-
Confidence            221000                                            0145678899999998   7999999999 


Q ss_pred             CChHHHHHHHHHHH
Q psy17467        236 DNVEKLFMQIAAEL  249 (730)
Q Consensus       236 ~GVeeLFe~Li~~l  249 (730)
                      .|+.++|..+++.+
T Consensus       166 ~~i~e~~~~iv~~l  179 (307)
T 3r7w_A          166 ESLYKAWSQIVCSL  179 (307)
T ss_dssp             SHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHH
Confidence            89999999988754

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.86  E-value=2e-22  Score=216.19  Aligned_cols=168  Identities=20%  Similarity=0.269  Sum_probs=124.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCC---CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh---hhHhhhccccE
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPP---GQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS---ITQSYYRSAHA   82 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~---~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s---l~~~~~r~ADa   82 (730)
                      ||+++|+.|||||||++++.++.++.   .+.||+|.++..  +  + ..+.++||||+|+++|..   .+..|+++|++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            69999999999999999988664432   356888877643  2  2 348899999999999964   46899999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +|+|||++++ .++.+..|.+.+....                             ...+++|++++|||+|+.+++...
T Consensus        76 ~IlV~Ditd~-~~~~~~~l~~~l~~~~-----------------------------~~~~~ipillvgNK~DL~~~~~R~  125 (331)
T 3r7w_B           76 LVYVIDSQDE-YINAITNLAMIIEYAY-----------------------------KVNPSINIEVLIHKVDGLSEDFKV  125 (331)
T ss_dssp             EEEECCCSSC-TTHHHHHHHHHHHHHH-----------------------------HHCTTCEEEEECCCCCSSCSHHHH
T ss_pred             EEEEEECCch-HHHHHHHHHHHHHHHh-----------------------------hcCCCCcEEEEEECcccCchhhhh
Confidence            9999999998 3333333322222111                             012678999999999997533210


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHh----cCCeEEEEecCCCCCh
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR----HDMYYLETSAKASDNV  238 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~----lg~~fvEtSAktG~GV  238 (730)
                      .                                           ..|+|+.++++++|+.    +++.|+||||++ .||
T Consensus       126 ~-------------------------------------------~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV  161 (331)
T 3r7w_B          126 D-------------------------------------------AQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSI  161 (331)
T ss_dssp             H-------------------------------------------HHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHH
T ss_pred             h-------------------------------------------HHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcH
Confidence            0                                           1256777888999986    689999999998 599


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy17467        239 EKLFMQIAAELMEKLAE  255 (730)
Q Consensus       239 eeLFe~Li~~l~e~~~~  255 (730)
                      .++|..+++.+......
T Consensus       162 ~eAFs~iv~~li~~~~~  178 (331)
T 3r7w_B          162 YEAFSRIVQKLIPELSF  178 (331)
T ss_dssp             HHHHHHHHTTSSTTHHH
T ss_pred             HHHHHHHHHHHHhhHHH
Confidence            99999999887654433

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.85  E-value=3.6e-22  Score=213.33  Aligned_cols=163  Identities=22%  Similarity=0.359  Sum_probs=119.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      ..+||+|+|++|||||||+++|+++.+...+ ||++..+  ..+..++  +.++||||||++.+..++..+++.+|++|+
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE--EEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE--EEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            3479999999999999999999998876543 6776443  4455555  789999999999999999999999999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      |||++++.+|+.+..|+..+....                              ..++.|++||+||+|+.+....    
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilV~NK~Dl~~~~~~----  284 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAED------------------------------ELRDAVLLVFANKQDLPNAMNA----  284 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTCG------------------------------GGTTCEEEEEEECTTSTTCCCH----
T ss_pred             EEECCchHHHHHHHHHHHHHHhhh------------------------------ccCCCeEEEEEECccCCcccCH----
Confidence            999999999999988887765422                              1257888999999998642100    


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L  245 (730)
                                                                 ..+..+.+...+...+++|++|||++|.||+++|+.|
T Consensus       285 -------------------------------------------~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l  321 (329)
T 3o47_A          285 -------------------------------------------AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL  321 (329)
T ss_dssp             -------------------------------------------HHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred             -------------------------------------------HHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHH
Confidence                                                       0000111111122345689999999999999999999


Q ss_pred             HHHHH
Q psy17467        246 AAELM  250 (730)
Q Consensus       246 i~~l~  250 (730)
                      ++.+.
T Consensus       322 ~~~l~  326 (329)
T 3o47_A          322 SNQLR  326 (329)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            98774

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.85  E-value=3.3e-21  Score=184.37  Aligned_cols=164  Identities=22%  Similarity=0.290  Sum_probs=121.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCC-----------chhhhhhhHhh
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG-----------QERFRSITQSY   76 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG-----------~e~~~sl~~~~   76 (730)
                      +||+++|++|||||||+++|+++.+...+.|+++...  ..+.++    .+.+|||||           ++.+...+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            7999999999999999999999998887777665433  333344    489999999           67788888888


Q ss_pred             hcc-ccEEEEEeecCCCCchhhh-HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCC
Q psy17467         77 YRS-AHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTD  154 (730)
Q Consensus        77 ~r~-ADaIILVyDvtd~eSfe~L-~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~D  154 (730)
                      ++. ++++++|||+.|..+|+++ ..|...-.                 .+...++....     ...+.|+++|+||+|
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~-----------------~~~~~~~~~~~-----~~~~~piilv~nK~D  133 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGE-----------------IPIDVEFYQFL-----RELDIPTIVAVNKLD  133 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTC-----------------CCHHHHHHHHH-----HHTTCCEEEEEECGG
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCc-----------------cHHHHHHHHHH-----HhcCCceEEEeehHh
Confidence            988 9999999999999999887 56765300                 00000000000     014567777888777


Q ss_pred             cchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCe-------E
Q psy17467        155 LDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMY-------Y  227 (730)
Q Consensus       155 L~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~-------f  227 (730)
                      +.+.                                                  +   .++++++++.++++       +
T Consensus       134 l~~~--------------------------------------------------~---~~~~~~~~~~~~~~~~~~~~~~  160 (190)
T 2cxx_A          134 KIKN--------------------------------------------------V---QEVINFLAEKFEVPLSEIDKVF  160 (190)
T ss_dssp             GCSC--------------------------------------------------H---HHHHHHHHHHHTCCGGGHHHHE
T ss_pred             ccCc--------------------------------------------------H---HHHHHHHHHHhhhhhhccCCcE
Confidence            7421                                                  1   45677888888864       7


Q ss_pred             EEEecCCCCChHHHHHHHHHHHHHH
Q psy17467        228 LETSAKASDNVEKLFMQIAAELMEK  252 (730)
Q Consensus       228 vEtSAktG~GVeeLFe~Li~~l~e~  252 (730)
                      ++|||++|.||+++|+++++.+.+.
T Consensus       161 ~~~Sa~~~~~v~~l~~~l~~~~~~~  185 (190)
T 2cxx_A          161 IPISAKFGDNIERLKNRIFEVIRER  185 (190)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             EEEecCCCCCHHHHHHHHHHhcchh
Confidence            9999999999999999999988553

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.85  E-value=6.3e-21  Score=183.85  Aligned_cols=159  Identities=14%  Similarity=0.191  Sum_probs=109.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCC----------chhhhhhhH
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG----------QERFRSITQ   74 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG----------~e~~~sl~~   74 (730)
                      +..+||+|+|++|||||||+++|+++.+...+.++.+.+.......+++   .+.+|||||          ++.+..++.
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   97 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIE   97 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHH
Confidence            3468999999999999999999999887666666666555445555554   589999999          777888888


Q ss_pred             hhhccc---cEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEecc
Q psy17467         75 SYYRSA---HALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASD  151 (730)
Q Consensus        75 ~~~r~A---DaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGN  151 (730)
                      .+++.+   |++++|+|++++.++.+.. ++..+..                                  .+.|+++|+|
T Consensus        98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~----------------------------------~~~p~i~v~n  142 (195)
T 1svi_A           98 TYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY----------------------------------YGIPVIVIAT  142 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH----------------------------------TTCCEEEEEE
T ss_pred             HHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----------------------------------cCCCEEEEEE
Confidence            888887   9999999999988887642 2222211                                  3568888899


Q ss_pred             CCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHH-HHHhcCCeEEEE
Q psy17467        152 KTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGED-FAKRHDMYYLET  230 (730)
Q Consensus       152 K~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~-lak~lg~~fvEt  230 (730)
                      |+|+.+.....                                                ...+++++ ++...++++++|
T Consensus       143 K~Dl~~~~~~~------------------------------------------------~~~~~~~~~~~~~~~~~~~~~  174 (195)
T 1svi_A          143 KADKIPKGKWD------------------------------------------------KHAKVVRQTLNIDPEDELILF  174 (195)
T ss_dssp             CGGGSCGGGHH------------------------------------------------HHHHHHHHHHTCCTTSEEEEC
T ss_pred             CcccCChHHHH------------------------------------------------HHHHHHHHHHcccCCCceEEE
Confidence            99986422100                                                00123332 444457899999


Q ss_pred             ecCCCCChHHHHHHHHHHH
Q psy17467        231 SAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       231 SAktG~GVeeLFe~Li~~l  249 (730)
                      ||++|.||+++|++|.+.+
T Consensus       175 Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          175 SSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             CTTTCTTHHHHHHHHHHHH
T ss_pred             EccCCCCHHHHHHHHHHHh
Confidence            9999999999999998765

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.84  E-value=6.4e-21  Score=183.06  Aligned_cols=152  Identities=18%  Similarity=0.259  Sum_probs=114.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh------h--hHhhh
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS------I--TQSYY   77 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s------l--~~~~~   77 (730)
                      .+||+++|++|||||||+++|++..+. ....++.+.++....+.+++  ..+.+|||||+.++..      +  ...++
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEI   81 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence            479999999999999999999987653 33445666677778888888  4589999999864321      1  12468


Q ss_pred             ccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467         78 RSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE  157 (730)
Q Consensus        78 r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~  157 (730)
                      +++|++|+|||++++.+++. ..|++.+....                               ..+.|+++|+||+|+.+
T Consensus        82 ~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~-------------------------------~~~~p~ilv~NK~Dl~~  129 (172)
T 2gj8_A           82 EQADRVLFMVDGTTTDAVDP-AEIWPEFIARL-------------------------------PAKLPITVVRNKADITG  129 (172)
T ss_dssp             HTCSEEEEEEETTTCCCCSH-HHHCHHHHHHS-------------------------------CTTCCEEEEEECHHHHC
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHHhc-------------------------------ccCCCEEEEEECccCCc
Confidence            99999999999999999874 46877775432                               14678888889888742


Q ss_pred             hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCC
Q psy17467        158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDN  237 (730)
Q Consensus       158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~G  237 (730)
                      ..                                                   .      .++...++++++|||++|.|
T Consensus       130 ~~---------------------------------------------------~------~~~~~~~~~~~~~SA~~g~g  152 (172)
T 2gj8_A          130 ET---------------------------------------------------L------GMSEVNGHALIRLSARTGEG  152 (172)
T ss_dssp             CC---------------------------------------------------C------EEEEETTEEEEECCTTTCTT
T ss_pred             ch---------------------------------------------------h------hhhhccCCceEEEeCCCCCC
Confidence            00                                                   0      01122467899999999999


Q ss_pred             hHHHHHHHHHHH
Q psy17467        238 VEKLFMQIAAEL  249 (730)
Q Consensus       238 VeeLFe~Li~~l  249 (730)
                      |+++|+.|.+.+
T Consensus       153 v~~l~~~l~~~~  164 (172)
T 2gj8_A          153 VDVLRNHLKQSM  164 (172)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh
Confidence            999999998766

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.83  E-value=2e-20  Score=173.90  Aligned_cols=150  Identities=20%  Similarity=0.165  Sum_probs=106.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh-------hhhhhHhhhcc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER-------FRSITQSYYRS   79 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~-------~~sl~~~~~r~   79 (730)
                      .||+++|++|||||||+++|.+..+. ....++.+.+.....+.+++  ..+.+|||||...       +...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            58999999999999999999988754 33345555566677777777  4789999999876       34456678899


Q ss_pred             ccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhh
Q psy17467         80 AHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDE  159 (730)
Q Consensus        80 ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e  159 (730)
                      +|++|+|||++++.+...  .|+..+...                                 .+.|+++|+||+|+.+..
T Consensus        80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~---------------------------------~~~p~ilv~nK~Dl~~~~  124 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD--YEVAEYLRR---------------------------------KGKPVILVATKVDDPKHE  124 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH--HHHHHHHHH---------------------------------HTCCEEEEEECCCSGGGG
T ss_pred             CCEEEEEEECCCcccHhH--HHHHHHHHh---------------------------------cCCCEEEEEECcccccch
Confidence            999999999998755432  333332211                                 356788889999986311


Q ss_pred             HHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCCh
Q psy17467        160 HVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNV  238 (730)
Q Consensus       160 ~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GV  238 (730)
                                                                            +++++++ .+++ ++++|||++|.||
T Consensus       125 ------------------------------------------------------~~~~~~~-~~~~~~~~~~Sa~~~~gv  149 (161)
T 2dyk_A          125 ------------------------------------------------------LYLGPLY-GLGFGDPIPTSSEHARGL  149 (161)
T ss_dssp             ------------------------------------------------------GGCGGGG-GGSSCSCEECBTTTTBSH
T ss_pred             ------------------------------------------------------HhHHHHH-hCCCCCeEEEecccCCCh
Confidence                                                                  1223344 5676 7999999999999


Q ss_pred             HHHHHHHHHHH
Q psy17467        239 EKLFMQIAAEL  249 (730)
Q Consensus       239 eeLFe~Li~~l  249 (730)
                      +++|+++++.+
T Consensus       150 ~~l~~~l~~~l  160 (161)
T 2dyk_A          150 EELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999998753

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.82  E-value=9.2e-21  Score=214.44  Aligned_cols=161  Identities=22%  Similarity=0.342  Sum_probs=121.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEE------EEe--CCeEEEEEEEeCCCchhhhhhhHhh
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKT------VEI--NNERIKLQIWDTAGQERFRSITQSY   76 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~------i~v--dg~~v~LqLwDTpG~e~~~sl~~~~   76 (730)
                      ...+||+++|++|||||||+++++++.+...+.||+|.++....      +.+  ++..+.+.+|||||++.+..+...+
T Consensus        39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~  118 (535)
T 3dpu_A           39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF  118 (535)
T ss_dssp             CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH
Confidence            45699999999999999999999999998888899987776552      222  3346889999999999999999999


Q ss_pred             hccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467         77 YRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD  156 (730)
Q Consensus        77 ~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~  156 (730)
                      ++.+|++|+|||+++   ++.+..|+.++....                                ++.|+++|+||+|+.
T Consensus       119 l~~~d~ii~V~D~s~---~~~~~~~~~~l~~~~--------------------------------~~~pvilV~NK~Dl~  163 (535)
T 3dpu_A          119 MTRSSVYMLLLDSRT---DSNKHYWLRHIEKYG--------------------------------GKSPVIVVMNKIDEN  163 (535)
T ss_dssp             HHSSEEEEEEECGGG---GGGHHHHHHHHHHHS--------------------------------SSCCEEEEECCTTTC
T ss_pred             ccCCcEEEEEEeCCC---chhHHHHHHHHHHhC--------------------------------CCCCEEEEEECCCcc
Confidence            999999999999975   477788999887653                                467888888888885


Q ss_pred             hhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCC
Q psy17467        157 EDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASD  236 (730)
Q Consensus       157 ~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~  236 (730)
                      +                                                  .+.+..+++++++...++++++|||++|.
T Consensus       164 ~--------------------------------------------------~~~v~~~~~~~~~~~~~~~~~~vSA~~g~  193 (535)
T 3dpu_A          164 P--------------------------------------------------SYNIEQKKINERFPAIENRFHRISCKNGD  193 (535)
T ss_dssp             T--------------------------------------------------TCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred             c--------------------------------------------------ccccCHHHHHHHHHhcCCceEEEecCccc
Confidence            2                                                  24566788889999999999999999999


Q ss_pred             ChHHHHHHHHHHHH
Q psy17467        237 NVEKLFMQIAAELM  250 (730)
Q Consensus       237 GVeeLFe~Li~~l~  250 (730)
                      ||+++|+.+.+.+.
T Consensus       194 gi~eL~~~l~~~~~  207 (535)
T 3dpu_A          194 GVESIAKSLKSAVL  207 (535)
T ss_dssp             -CTTHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998773

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.82  E-value=4.8e-20  Score=190.58  Aligned_cols=155  Identities=21%  Similarity=0.166  Sum_probs=120.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh------hhHhhh-
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS------ITQSYY-   77 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s------l~~~~~-   77 (730)
                      ...+||+++|++|||||||+|+|++..+.....|.++.+.....+..++  ..+.+|||||...+..      +...++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            3468999999999999999999999887666667777677666776666  7899999999987654      335565 


Q ss_pred             -ccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467         78 -RSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD  156 (730)
Q Consensus        78 -r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~  156 (730)
                       ..+|++|+|+|+++.++.   ..|...+..                                  .+.|+++|+||+|+.
T Consensus        81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~----------------------------------~~~pvilv~NK~Dl~  123 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQS---LYLLLEILE----------------------------------MEKKVILAMTAIDEA  123 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHH---HHHHHHHHT----------------------------------TTCCEEEEEECHHHH
T ss_pred             hcCCCEEEEEeCCCchhhH---HHHHHHHHh----------------------------------cCCCEEEEEECcCCC
Confidence             589999999999986443   335554432                                  357888888888885


Q ss_pred             hhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCC
Q psy17467        157 EDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASD  236 (730)
Q Consensus       157 ~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~  236 (730)
                      +.                                                  +.+. .++.++++.+|+++++|||++|.
T Consensus       124 ~~--------------------------------------------------~~i~-~~~~~l~~~lg~~vi~~SA~~g~  152 (258)
T 3a1s_A          124 KK--------------------------------------------------TGMK-IDRYELQKHLGIPVVFTSSVTGE  152 (258)
T ss_dssp             HH--------------------------------------------------TTCC-BCHHHHHHHHCSCEEECCTTTCT
T ss_pred             Cc--------------------------------------------------cchH-HHHHHHHHHcCCCEEEEEeeCCc
Confidence            31                                                  1222 24678889999999999999999


Q ss_pred             ChHHHHHHHHHHH
Q psy17467        237 NVEKLFMQIAAEL  249 (730)
Q Consensus       237 GVeeLFe~Li~~l  249 (730)
                      ||+++|+.+.+.+
T Consensus       153 gi~el~~~i~~~~  165 (258)
T 3a1s_A          153 GLEELKEKIVEYA  165 (258)
T ss_dssp             THHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998765

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.82  E-value=4.2e-20  Score=176.99  Aligned_cols=157  Identities=18%  Similarity=0.257  Sum_probs=114.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCC----------chhhhhhhH
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG----------QERFRSITQ   74 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG----------~e~~~sl~~   74 (730)
                      ...+||+|+|++|||||||+++|+++.+. .+.++.+.+........+.   .+.+|||||          ++.+..++.
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   96 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVE   96 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHH
Confidence            45689999999999999999999988743 3335555444343333333   478999999          677778888


Q ss_pred             hhhccc---cEEEEEeecCCCCchhhh--HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEe
Q psy17467         75 SYYRSA---HALILVYDISCQPTFDCL--TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALA  149 (730)
Q Consensus        75 ~~~r~A---DaIILVyDvtd~eSfe~L--~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLV  149 (730)
                      .+++.+   |++++|+|+++..+....  ..|+..                                     .+.|+++|
T Consensus        97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~-------------------------------------~~~p~i~v  139 (195)
T 3pqc_A           97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS-------------------------------------LNIPFTIV  139 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------------------------------------TTCCEEEE
T ss_pred             HHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH-------------------------------------cCCCEEEE
Confidence            888876   999999999886554432  223322                                     25688889


Q ss_pred             ccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC-CeEE
Q psy17467        150 SDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYL  228 (730)
Q Consensus       150 GNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg-~~fv  228 (730)
                      +||+|+.+...                                                +.+..+++++++...+ ++++
T Consensus       140 ~nK~Dl~~~~~------------------------------------------------~~~~~~~~~~~~~~~~~~~~~  171 (195)
T 3pqc_A          140 LTKMDKVKMSE------------------------------------------------RAKKLEEHRKVFSKYGEYTII  171 (195)
T ss_dssp             EECGGGSCGGG------------------------------------------------HHHHHHHHHHHHHSSCCSCEE
T ss_pred             EEChhcCChHH------------------------------------------------HHHHHHHHHHHHhhcCCCceE
Confidence            99999864221                                                1223456677777644 7899


Q ss_pred             EEecCCCCChHHHHHHHHHHHH
Q psy17467        229 ETSAKASDNVEKLFMQIAAELM  250 (730)
Q Consensus       229 EtSAktG~GVeeLFe~Li~~l~  250 (730)
                      +|||++|.||+++|+++.+.+.
T Consensus       172 ~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          172 PTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHC
T ss_pred             EEecCCCCCHHHHHHHHHHHhh
Confidence            9999999999999999998773

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.81  E-value=3.7e-20  Score=193.37  Aligned_cols=153  Identities=17%  Similarity=0.180  Sum_probs=114.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh------hhhHhhhc-
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR------SITQSYYR-   78 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~------sl~~~~~r-   78 (730)
                      ..+||+++|++|||||||+|+|++........|.++.+....  .++. .+.+++|||||+..+.      .+...++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~--~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSG--LVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEE--ECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEE--EEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            358999999999999999999999876666667655444333  3444 4679999999998775      45667776 


Q ss_pred             -cccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467         79 -SAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE  157 (730)
Q Consensus        79 -~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~  157 (730)
                       .+|++|+|+|+++.++   ...|..++..                                  .+.|+++|+||+|+.+
T Consensus        79 ~~~d~vi~V~D~t~~e~---~~~~~~~l~~----------------------------------~~~p~ilv~NK~Dl~~  121 (272)
T 3b1v_A           79 QRADSILNVVDATNLER---NLYLTTQLIE----------------------------------TGIPVTIALNMIDVLD  121 (272)
T ss_dssp             TCCSEEEEEEEGGGHHH---HHHHHHHHHH----------------------------------TCSCEEEEEECHHHHH
T ss_pred             CCCCEEEEEecCCchHh---HHHHHHHHHh----------------------------------cCCCEEEEEEChhhCC
Confidence             6999999999987533   3445555432                                  3567888888888753


Q ss_pred             hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCC
Q psy17467        158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDN  237 (730)
Q Consensus       158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~G  237 (730)
                      .                                                  +.+. .++..+++.+|+++++|||++|.|
T Consensus       122 ~--------------------------------------------------~~~~-~~~~~l~~~lg~~vi~~SA~~g~g  150 (272)
T 3b1v_A          122 G--------------------------------------------------QGKK-INVDKLSYHLGVPVVATSALKQTG  150 (272)
T ss_dssp             H--------------------------------------------------TTCC-CCHHHHHHHHTSCEEECBTTTTBS
T ss_pred             c--------------------------------------------------CCcH-HHHHHHHHHcCCCEEEEEccCCCC
Confidence            1                                                  1222 356788889999999999999999


Q ss_pred             hHHHHHHHHHHH
Q psy17467        238 VEKLFMQIAAEL  249 (730)
Q Consensus       238 VeeLFe~Li~~l  249 (730)
                      |+++|+.+++.+
T Consensus       151 i~el~~~i~~~~  162 (272)
T 3b1v_A          151 VDQVVKKAAHTT  162 (272)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHH
Confidence            999999997643

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.79  E-value=8.6e-20  Score=188.60  Aligned_cols=151  Identities=19%  Similarity=0.144  Sum_probs=117.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh----------hhHhhh
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS----------ITQSYY   77 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s----------l~~~~~   77 (730)
                      .+|+++|.+|||||||+|+|++..+.....|+++.+.....+.+++  ..+.+|||||...+..          +...++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            3799999999999999999999887777778888888888888888  4799999999877653          456677


Q ss_pred             --ccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCc
Q psy17467         78 --RSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDL  155 (730)
Q Consensus        78 --r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL  155 (730)
                        +++|++|+|+|+++.+++..+..|+.+                                     .+.|+++|+||+|+
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~~-------------------------------------~~~pvilv~NK~Dl  122 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQLFE-------------------------------------LGKPVVVALNMMDI  122 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHHHTT-------------------------------------SCSCEEEEEECHHH
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHHHHH-------------------------------------cCCCEEEEEEChhc
Confidence              899999999999985444333222111                                     35788888899888


Q ss_pred             chhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCC
Q psy17467        156 DEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKAS  235 (730)
Q Consensus       156 ~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG  235 (730)
                      .+..                                                  .+ ......+++.+|+++++|||++|
T Consensus       123 ~~~~--------------------------------------------------~~-~~~~~~l~~~lg~~vi~~SA~~g  151 (256)
T 3iby_A          123 AEHR--------------------------------------------------GI-SIDTEKLESLLGCSVIPIQAHKN  151 (256)
T ss_dssp             HHHT--------------------------------------------------TC-EECHHHHHHHHCSCEEECBGGGT
T ss_pred             CCcC--------------------------------------------------Cc-HHHHHHHHHHcCCCEEEEECCCC
Confidence            5311                                                  11 12345678888999999999999


Q ss_pred             CChHHHHHHHHHH
Q psy17467        236 DNVEKLFMQIAAE  248 (730)
Q Consensus       236 ~GVeeLFe~Li~~  248 (730)
                      .||+++|+.+.+.
T Consensus       152 ~gi~el~~~i~~~  164 (256)
T 3iby_A          152 IGIPALQQSLLHC  164 (256)
T ss_dssp             BSHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999998753

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.78  E-value=5.8e-19  Score=182.48  Aligned_cols=154  Identities=23%  Similarity=0.198  Sum_probs=120.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh------hhHhhh--c
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS------ITQSYY--R   78 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s------l~~~~~--r   78 (730)
                      .+||+++|++|||||||+++|++..+.....|+++.+.....+.+++  ..+.+|||||...+..      +...++  .
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   80 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILDG   80 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence            57999999999999999999999888777778888888888888888  4599999999887665      556666  6


Q ss_pred             cccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchh
Q psy17467         79 SAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDED  158 (730)
Q Consensus        79 ~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~  158 (730)
                      ++|++|+|+|+++.   +....|...+...                                 ...|+++|+||+|+.+.
T Consensus        81 ~~d~vi~v~D~~~~---~~~~~~~~~~~~~---------------------------------~~~p~ilv~NK~Dl~~~  124 (271)
T 3k53_A           81 NADVIVDIVDSTCL---MRNLFLTLELFEM---------------------------------EVKNIILVLNKFDLLKK  124 (271)
T ss_dssp             CCSEEEEEEEGGGH---HHHHHHHHHHHHT---------------------------------TCCSEEEEEECHHHHHH
T ss_pred             CCcEEEEEecCCcc---hhhHHHHHHHHhc---------------------------------CCCCEEEEEEChhcCcc
Confidence            89999999999874   2223333333221                                 12688888899988542


Q ss_pred             hHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCCh
Q psy17467        159 EHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNV  238 (730)
Q Consensus       159 e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GV  238 (730)
                      .                                                  .+.. +...+++.+|+++++|||++|.|+
T Consensus       125 ~--------------------------------------------------~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi  153 (271)
T 3k53_A          125 K--------------------------------------------------GAKI-DIKKMRKELGVPVIPTNAKKGEGV  153 (271)
T ss_dssp             H--------------------------------------------------TCCC-CHHHHHHHHSSCEEECBGGGTBTH
T ss_pred             c--------------------------------------------------ccHH-HHHHHHHHcCCcEEEEEeCCCCCH
Confidence            1                                                  1111 267788889999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy17467        239 EKLFMQIAAEL  249 (730)
Q Consensus       239 eeLFe~Li~~l  249 (730)
                      +++|+.+.+.+
T Consensus       154 ~~l~~~i~~~~  164 (271)
T 3k53_A          154 EELKRMIALMA  164 (271)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998765

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.78  E-value=9.3e-19  Score=172.79  Aligned_cols=164  Identities=12%  Similarity=0.081  Sum_probs=108.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeC-CeEEEEEEEeCCC----------chhhhhhh
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN-NERIKLQIWDTAG----------QERFRSIT   73 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vd-g~~v~LqLwDTpG----------~e~~~sl~   73 (730)
                      ...+||+|+|.+|||||||+++|++..+.....++.+.+.......+. .....+.||||||          ++.+..+.
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  106 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL  106 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence            346899999999999999999999887322222222222223333333 3336789999999          44556666


Q ss_pred             Hhhhcc---ccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEec
Q psy17467         74 QSYYRS---AHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALAS  150 (730)
Q Consensus        74 ~~~~r~---ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVG  150 (730)
                      ..+++.   +|++|+|+|+++..+... ..|+..+..                                  .+.|+++|+
T Consensus       107 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~----------------------------------~~~p~i~v~  151 (223)
T 4dhe_A          107 SSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP----------------------------------TGKPIHSLL  151 (223)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG----------------------------------GCCCEEEEE
T ss_pred             HHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh----------------------------------cCCCEEEEE
Confidence            777776   788999999998654322 234444321                                  356888999


Q ss_pred             cCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHH-HHHHH------hc
Q psy17467        151 DKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVG-EDFAK------RH  223 (730)
Q Consensus       151 NK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~-~~lak------~l  223 (730)
                      ||+|+.+......                                                ..++. +.+..      ..
T Consensus       152 nK~Dl~~~~~~~~------------------------------------------------~~~~~~~~l~~~~~~~~~~  183 (223)
T 4dhe_A          152 TKCDKLTRQESIN------------------------------------------------ALRATQKSLDAYRDAGYAG  183 (223)
T ss_dssp             ECGGGSCHHHHHH------------------------------------------------HHHHHHHHHHHHHHHTCCS
T ss_pred             eccccCChhhHHH------------------------------------------------HHHHHHHHHHhhhhcccCC
Confidence            9999865332100                                                00111 22222      25


Q ss_pred             CCeEEEEecCCCCChHHHHHHHHHHHHH
Q psy17467        224 DMYYLETSAKASDNVEKLFMQIAAELME  251 (730)
Q Consensus       224 g~~fvEtSAktG~GVeeLFe~Li~~l~e  251 (730)
                      ++++++|||++|.||+++|+.|.+.+..
T Consensus       184 ~~~~~~~SA~~g~gv~~l~~~l~~~~~~  211 (223)
T 4dhe_A          184 KLTVQLFSALKRTGLDDAHALIESWLRP  211 (223)
T ss_dssp             CEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred             CCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence            6789999999999999999999988743

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.77  E-value=1.2e-19  Score=178.76  Aligned_cols=154  Identities=16%  Similarity=0.257  Sum_probs=108.4

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCC---CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhcc-
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPP---GQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS-   79 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~---~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~-   79 (730)
                      ....++|+++|++|||||||+++|++..+..   .+.|+++.++         ..+.+.+|||||++.+...+..+++. 
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~   79 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR   79 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence            3456899999999999999999999988765   3445554332         33679999999999998888888887 


Q ss_pred             ---ccEEEEEeecC-CCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCc
Q psy17467         80 ---AHALILVYDIS-CQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDL  155 (730)
Q Consensus        80 ---ADaIILVyDvt-d~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL  155 (730)
                         +|++|+|||++ ++.+|+.+..|+.++.....                           .....+.|+++|+||+|+
T Consensus        80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~p~ilv~nK~Dl  132 (218)
T 1nrj_B           80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITE---------------------------SSCENGIDILIACNKSEL  132 (218)
T ss_dssp             GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHH---------------------------HHSTTCCCEEEEEECTTS
T ss_pred             cccCCEEEEEEECCCChHHHHHHHHHHHHHHhccc---------------------------ccccCCCCEEEEEEchHh
Confidence               99999999999 89999999999888765421                           001257889999999998


Q ss_pred             chhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCC
Q psy17467        156 DEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKAS  235 (730)
Q Consensus       156 ~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG  235 (730)
                      .+......                                            -.....+++..++...++.|+++||++|
T Consensus       133 ~~~~~~~~--------------------------------------------~~~~l~~~~~~~~~~~~~~~~~~Sa~~~  168 (218)
T 1nrj_B          133 FTARPPSK--------------------------------------------IKDALESEIQKVIERRKKSLNEVERKIN  168 (218)
T ss_dssp             TTCCCHHH--------------------------------------------HHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             cccCCHHH--------------------------------------------HHHHHHHHHHHHHHHHhccccccccccc
Confidence            64211000                                            0001135667777777888999999987


Q ss_pred             CC
Q psy17467        236 DN  237 (730)
Q Consensus       236 ~G  237 (730)
                      .+
T Consensus       169 ~~  170 (218)
T 1nrj_B          169 EE  170 (218)
T ss_dssp             --
T ss_pred             cc
Confidence            65

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.77  E-value=2.1e-19  Score=186.99  Aligned_cols=153  Identities=20%  Similarity=0.182  Sum_probs=116.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh----------hhHhh
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS----------ITQSY   76 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s----------l~~~~   76 (730)
                      .++|+++|.+|||||||+|+|++..+.....|+++.+.....+.+++  ..+.+|||||..++..          +...+
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            48999999999999999999999887777778888788888888777  4678999999877652          23333


Q ss_pred             h--ccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCC
Q psy17467         77 Y--RSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTD  154 (730)
Q Consensus        77 ~--r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~D  154 (730)
                      +  +.+|++|+|+|+++.++..   .|...+..                                  .+.|+++|+||+|
T Consensus        81 ~~~~~~d~ii~VvD~~~~~~~~---~~~~~l~~----------------------------------~~~p~ivv~NK~D  123 (274)
T 3i8s_A           81 ILSGDADLLINVVDASNLERNL---YLTLQLLE----------------------------------LGIPCIVALNMLD  123 (274)
T ss_dssp             HHHTCCSEEEEEEEGGGHHHHH---HHHHHHHH----------------------------------HTCCEEEEEECHH
T ss_pred             HhhcCCCEEEEEecCCChHHHH---HHHHHHHh----------------------------------cCCCEEEEEECcc
Confidence            3  7999999999999844333   33333322                                  1467888888888


Q ss_pred             cchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCC
Q psy17467        155 LDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKA  234 (730)
Q Consensus       155 L~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAkt  234 (730)
                      +.+..                                                  .+ ......+++.+|+++++|||++
T Consensus       124 l~~~~--------------------------------------------------~~-~~~~~~l~~~lg~~~i~~SA~~  152 (274)
T 3i8s_A          124 IAEKQ--------------------------------------------------NI-RIEIDALSARLGCPVIPLVSTR  152 (274)
T ss_dssp             HHHHT--------------------------------------------------TE-EECHHHHHHHHTSCEEECCCGG
T ss_pred             chhhh--------------------------------------------------hH-HHHHHHHHHhcCCCEEEEEcCC
Confidence            75311                                                  11 1235677888899999999999


Q ss_pred             CCChHHHHHHHHHHH
Q psy17467        235 SDNVEKLFMQIAAEL  249 (730)
Q Consensus       235 G~GVeeLFe~Li~~l  249 (730)
                      |.||+++|+.+.+.+
T Consensus       153 g~gi~el~~~i~~~~  167 (274)
T 3i8s_A          153 GRGIEALKLAIDRYK  167 (274)
T ss_dssp             GHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999999887544

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.77  E-value=3.2e-18  Score=181.08  Aligned_cols=158  Identities=16%  Similarity=0.117  Sum_probs=120.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeEEEEEEEeC-CeEEEEEEEeCCCchhhh----------hhh
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPP-GQGATIGVDFMIKTVEIN-NERIKLQIWDTAGQERFR----------SIT   73 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~-~~~pTig~d~~~~~i~vd-g~~v~LqLwDTpG~e~~~----------sl~   73 (730)
                      ..-.|+++|.+|||||||+|+|++..+.. ...+..+..........+ +  ..+.||||||..+..          ...
T Consensus         9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~~~~~   86 (308)
T 3iev_A            9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSMVEIA   86 (308)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHHHHHH
Confidence            45689999999999999999999988753 333444444444455555 5  789999999985433          556


Q ss_pred             HhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCC
Q psy17467         74 QSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKT  153 (730)
Q Consensus        74 ~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~  153 (730)
                      ..+++.+|++|+|+|+++..++++...|++.+..                                  .+.|+++|+||+
T Consensus        87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----------------------------------~~~pvilV~NK~  132 (308)
T 3iev_A           87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----------------------------------LNKPVIVVINKI  132 (308)
T ss_dssp             HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----------------------------------GCCCEEEEEECG
T ss_pred             HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----------------------------------cCCCEEEEEECc
Confidence            6788999999999999999999887777776532                                  356788888888


Q ss_pred             CcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC--CeEEEEe
Q psy17467        154 DLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD--MYYLETS  231 (730)
Q Consensus       154 DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg--~~fvEtS  231 (730)
                      |+..                                                  .+....+....+++.++  +.+++||
T Consensus       133 Dl~~--------------------------------------------------~~~~~~~~~~~l~~~~~~~~~i~~vS  162 (308)
T 3iev_A          133 DKIG--------------------------------------------------PAKNVLPLIDEIHKKHPELTEIVPIS  162 (308)
T ss_dssp             GGSS--------------------------------------------------SGGGGHHHHHHHHHHCTTCCCEEECB
T ss_pred             cCCC--------------------------------------------------CHHHHHHHHHHHHHhccCCCeEEEEe
Confidence            8752                                                  11233456677777776  7899999


Q ss_pred             cCCCCChHHHHHHHHHHH
Q psy17467        232 AKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       232 AktG~GVeeLFe~Li~~l  249 (730)
                      |++|.||+++|+.+.+.+
T Consensus       163 A~~g~gv~~L~~~l~~~l  180 (308)
T 3iev_A          163 ALKGANLDELVKTILKYL  180 (308)
T ss_dssp             TTTTBSHHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHhC
Confidence            999999999999998766

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.76  E-value=1.2e-17  Score=179.91  Aligned_cols=164  Identities=18%  Similarity=0.179  Sum_probs=121.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh---------hhhHhh
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR---------SITQSY   76 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~---------sl~~~~   76 (730)
                      ..++|+++|.+|||||||+++|++..+.....+..+.+.....+..++  ..+.+|||||.....         .....+
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  243 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILAL  243 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence            457999999999999999999998875443334444445455555555  679999999975421         111234


Q ss_pred             hccccEEEEEeecCCCC--chhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCC
Q psy17467         77 YRSAHALILVYDISCQP--TFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTD  154 (730)
Q Consensus        77 ~r~ADaIILVyDvtd~e--Sfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~D  154 (730)
                      ...+|++++|+|++++.  +++....|+..+....                                .+.|+++|+||.|
T Consensus       244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--------------------------------~~~piilV~NK~D  291 (357)
T 2e87_A          244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--------------------------------KDLPFLVVINKID  291 (357)
T ss_dssp             GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--------------------------------TTSCEEEEECCTT
T ss_pred             HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--------------------------------CCCCEEEEEECcc
Confidence            55799999999999987  6777788888876532                                2578888899999


Q ss_pred             cchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCC
Q psy17467        155 LDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKA  234 (730)
Q Consensus       155 L~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAkt  234 (730)
                      +.+...                                                    .+++.+++...++++++|||++
T Consensus       292 l~~~~~----------------------------------------------------~~~~~~~~~~~~~~~~~iSA~~  319 (357)
T 2e87_A          292 VADEEN----------------------------------------------------IKRLEKFVKEKGLNPIKISALK  319 (357)
T ss_dssp             TCCHHH----------------------------------------------------HHHHHHHHHHTTCCCEECBTTT
T ss_pred             cCChHH----------------------------------------------------HHHHHHHHHhcCCCeEEEeCCC
Confidence            864221                                                    1345566667888999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHHH
Q psy17467        235 SDNVEKLFMQIAAELMEKLAE  255 (730)
Q Consensus       235 G~GVeeLFe~Li~~l~e~~~~  255 (730)
                      |+||+++|+++.+.+......
T Consensus       320 g~gi~~l~~~i~~~l~~~~~~  340 (357)
T 2e87_A          320 GTGIDLVKEEIIKTLRPLAEK  340 (357)
T ss_dssp             TBTHHHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHHhh
Confidence            999999999999988654333

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.75  E-value=5.9e-18  Score=187.18  Aligned_cols=151  Identities=19%  Similarity=0.218  Sum_probs=103.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh---------hhhhhHhhhc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER---------FRSITQSYYR   78 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~---------~~sl~~~~~r   78 (730)
                      +|+|||+||||||||+|+|++.... ....|.++.++....+.+++.  .+++|||||.+.         +...+..+++
T Consensus         3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~   80 (439)
T 1mky_A            3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   80 (439)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHHH
Confidence            7999999999999999999988753 445577777777888888884  579999999764         3445667899


Q ss_pred             cccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchh
Q psy17467         79 SAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDED  158 (730)
Q Consensus        79 ~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~  158 (730)
                      +||++|+|+|+++..+..+  .|+..+.+.                                 .+.|+++|+||+|+.+.
T Consensus        81 ~ad~il~V~D~~~~~~~~d--~~i~~~l~~---------------------------------~~~p~ilv~NK~D~~~~  125 (439)
T 1mky_A           81 EADLVLFVVDGKRGITKED--ESLADFLRK---------------------------------STVDTILVANKAENLRE  125 (439)
T ss_dssp             TCSEEEEEEETTTCCCHHH--HHHHHHHHH---------------------------------HTCCEEEEEESCCSHHH
T ss_pred             hCCEEEEEEECCCCCCHHH--HHHHHHHHH---------------------------------cCCCEEEEEeCCCCccc
Confidence            9999999999998766543  222222211                                 24678888899887531


Q ss_pred             hHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHH-HHHHHhcCC-eEEEEecCCCC
Q psy17467        159 EHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVG-EDFAKRHDM-YYLETSAKASD  236 (730)
Q Consensus       159 e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~-~~lak~lg~-~fvEtSAktG~  236 (730)
                      .                                                     ..++ .+++ .+|+ .++++||++|.
T Consensus       126 ~-----------------------------------------------------~~~~~~~~~-~lg~~~~~~iSA~~g~  151 (439)
T 1mky_A          126 F-----------------------------------------------------EREVKPELY-SLGFGEPIPVSAEHNI  151 (439)
T ss_dssp             H-----------------------------------------------------HHHTHHHHG-GGSSCSCEECBTTTTB
T ss_pred             c-----------------------------------------------------HHHHHHHHH-hcCCCCEEEEeccCCC
Confidence            0                                                     0112 3343 4566 68999999999


Q ss_pred             ChHHHHHHHHHHHH
Q psy17467        237 NVEKLFMQIAAELM  250 (730)
Q Consensus       237 GVeeLFe~Li~~l~  250 (730)
                      |++++|+.+.+.+.
T Consensus       152 gv~~L~~~i~~~l~  165 (439)
T 1mky_A          152 NLDTMLETIIKKLE  165 (439)
T ss_dssp             SHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhcc
Confidence            99999999988773

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.74  E-value=9.2e-18  Score=188.37  Aligned_cols=155  Identities=15%  Similarity=0.140  Sum_probs=97.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhh--------Hhhh
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSIT--------QSYY   77 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~--------~~~~   77 (730)
                      .+||+|+|.+|||||||+|+|++... .....++++.+.....+.+++  +.+.+|||||..++...+        ..++
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~  310 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM  310 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence            47999999999999999999998754 345556677777777888888  679999999987765443        3368


Q ss_pred             ccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467         78 RSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE  157 (730)
Q Consensus        78 r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~  157 (730)
                      +.||++|+|+|++++.+++.+..+...+...                                 .+.|+++|+||+|+.+
T Consensus       311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l---------------------------------~~~piIvV~NK~Dl~~  357 (476)
T 3gee_A          311 AEADLILYLLDLGTERLDDELTEIRELKAAH---------------------------------PAAKFLTVANKLDRAA  357 (476)
T ss_dssp             SSCSEEEEEEETTTCSSGGGHHHHHHHHHHC---------------------------------TTSEEEEEEECTTSCT
T ss_pred             ccCCEEEEEEECCCCcchhhhHHHHHHHHhc---------------------------------CCCCEEEEEECcCCCC
Confidence            8999999999999999998654443333211                                 2568888889988853


Q ss_pred             hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCC
Q psy17467        158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDN  237 (730)
Q Consensus       158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~G  237 (730)
                      ...                                                     .+.+++++...+++++|||++|.|
T Consensus       358 ~~~-----------------------------------------------------~~~~~l~~~~~~~~i~vSAktg~G  384 (476)
T 3gee_A          358 NAD-----------------------------------------------------ALIRAIADGTGTEVIGISALNGDG  384 (476)
T ss_dssp             TTH-----------------------------------------------------HHHHHHHHHHTSCEEECBTTTTBS
T ss_pred             ccc-----------------------------------------------------hhHHHHHhcCCCceEEEEECCCCC
Confidence            211                                                     111334443236899999999999


Q ss_pred             hHHHHHHHHHHH
Q psy17467        238 VEKLFMQIAAEL  249 (730)
Q Consensus       238 VeeLFe~Li~~l  249 (730)
                      |+++|++|.+.+
T Consensus       385 I~eL~~~i~~~~  396 (476)
T 3gee_A          385 IDTLKQHMGDLV  396 (476)
T ss_dssp             HHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998876

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.72  E-value=3.1e-17  Score=173.49  Aligned_cols=161  Identities=16%  Similarity=0.173  Sum_probs=109.8

Q ss_pred             CCCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh--------hhh
Q psy17467          1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPP-GQGATIGVDFMIKTVEINNERIKLQIWDTAGQER--------FRS   71 (730)
Q Consensus         1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~-~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~--------~~s   71 (730)
                      |.+.-...+|+++|.+|||||||+|+|++..+.. ...|..+.+.....+..++  .++.||||||..+        +..
T Consensus         1 m~~~~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~   78 (301)
T 1wf3_A            1 MAEKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQ   78 (301)
T ss_dssp             --CCCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHH
T ss_pred             CCCCccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHH
Confidence            5555566789999999999999999999988753 3344443333333444444  7899999999865        445


Q ss_pred             hhHhhhccccEEEEEeecCCCCchhhhHHHH-HHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEec
Q psy17467         72 ITQSYYRSAHALILVYDISCQPTFDCLTDWL-REIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALAS  150 (730)
Q Consensus        72 l~~~~~r~ADaIILVyDvtd~eSfe~L~~wl-eeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVG  150 (730)
                      ....+++++|++|+|+|++++.+..  ..|+ +.+...                                .++.|+++|+
T Consensus        79 ~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~--------------------------------~~~~p~ilV~  124 (301)
T 1wf3_A           79 EVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPL--------------------------------VGKVPILLVG  124 (301)
T ss_dssp             HHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG--------------------------------TTTSCEEEEE
T ss_pred             HHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhh--------------------------------cCCCCEEEEE
Confidence            5667899999999999999876544  3444 333211                                1467888888


Q ss_pred             cCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEE
Q psy17467        151 DKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLET  230 (730)
Q Consensus       151 NK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEt  230 (730)
                      ||+|+.+....                                                 + .+.++++  .....+++|
T Consensus       125 NK~Dl~~~~~~-------------------------------------------------~-~~~~~~~--~~~~~~~~i  152 (301)
T 1wf3_A          125 NKLDAAKYPEE-------------------------------------------------A-MKAYHEL--LPEAEPRML  152 (301)
T ss_dssp             ECGGGCSSHHH-------------------------------------------------H-HHHHHHT--STTSEEEEC
T ss_pred             ECcccCCchHH-------------------------------------------------H-HHHHHHh--cCcCcEEEE
Confidence            88888532110                                                 0 1112222  113479999


Q ss_pred             ecCCCCChHHHHHHHHHHH
Q psy17467        231 SAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       231 SAktG~GVeeLFe~Li~~l  249 (730)
                      ||++|.|++++|+.+.+.+
T Consensus       153 SA~~g~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          153 SALDERQVAELKADLLALM  171 (301)
T ss_dssp             CTTCHHHHHHHHHHHHTTC
T ss_pred             eCCCCCCHHHHHHHHHHhc
Confidence            9999999999999987644

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.72  E-value=1e-17  Score=188.30  Aligned_cols=152  Identities=24%  Similarity=0.225  Sum_probs=115.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCch-hhhh--------hhHhhh
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE-RFRS--------ITQSYY   77 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e-~~~s--------l~~~~~   77 (730)
                      ++|+|+|.||||||||+|+|++.++ .....|+++.++....+.+++  ..+.+|||||.. ++..        ....++
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~  321 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI  321 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence            8999999999999999999998764 345557777777778888887  668999999987 5432        234678


Q ss_pred             ccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467         78 RSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE  157 (730)
Q Consensus        78 r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~  157 (730)
                      +.||++|+|+|++++.++++.. +++.+                                    .+.|+++|+||+|+.+
T Consensus       322 ~~aD~vl~VvD~s~~~s~~~~~-il~~l------------------------------------~~~piivV~NK~DL~~  364 (482)
T 1xzp_A          322 EKADIVLFVLDASSPLDEEDRK-ILERI------------------------------------KNKRYLVVINKVDVVE  364 (482)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHH-HHHHH------------------------------------TTSSEEEEEEECSSCC
T ss_pred             hcccEEEEEecCCCCCCHHHHH-HHHHh------------------------------------cCCCEEEEEECccccc
Confidence            9999999999999998886642 22221                                    2457778888888742


Q ss_pred             hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCC
Q psy17467        158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDN  237 (730)
Q Consensus       158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~G  237 (730)
                                                                          .++.++..+++. .++++++|||++|.|
T Consensus       365 ----------------------------------------------------~~~~~~~~~~~~-~~~~~i~iSAktg~G  391 (482)
T 1xzp_A          365 ----------------------------------------------------KINEEEIKNKLG-TDRHMVKISALKGEG  391 (482)
T ss_dssp             ----------------------------------------------------CCCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred             ----------------------------------------------------ccCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence                                                                122344444432 456899999999999


Q ss_pred             hHHHHHHHHHHHHH
Q psy17467        238 VEKLFMQIAAELME  251 (730)
Q Consensus       238 VeeLFe~Li~~l~e  251 (730)
                      |+++|+.|.+.+..
T Consensus       392 i~eL~~~l~~~~~~  405 (482)
T 1xzp_A          392 LEKLEESIYRETQE  405 (482)
T ss_dssp             HHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999987653

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.70  E-value=1e-16  Score=172.07  Aligned_cols=147  Identities=15%  Similarity=0.277  Sum_probs=104.9

Q ss_pred             CCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecC----------CCCchhhhHHHHHHHH
Q psy17467         37 GATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDIS----------CQPTFDCLTDWLREIE  106 (730)
Q Consensus        37 ~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvt----------d~eSfe~L~~wleeI~  106 (730)
                      .||+|.  ....+.+++  +.+++|||+|+++++++|..|+++++++|+|||++          +..+|++...|++.+.
T Consensus       152 ~~TiGi--~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~  227 (327)
T 3ohm_A          152 VPTTGI--IEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTII  227 (327)
T ss_dssp             CCCCSE--EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHH
T ss_pred             CceeeE--EEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHh
Confidence            345563  344555565  88999999999999999999999999999999776          4555666666666654


Q ss_pred             HHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhh
Q psy17467        107 EYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYL  186 (730)
Q Consensus       107 ~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~  186 (730)
                      ...                              .-.++|++|+|||+|+.+..     +.......++|..         
T Consensus       228 ~~~------------------------------~~~~~~iiL~~NK~DL~~~k-----i~~~~l~~~fp~y---------  263 (327)
T 3ohm_A          228 TYP------------------------------WFQNSSVILFLNKKDLLEEK-----IMYSHLVDYFPEY---------  263 (327)
T ss_dssp             TSG------------------------------GGTTCEEEEEEECHHHHHHH-----TTTSCGGGTCTTC---------
T ss_pred             hhh------------------------------ccCCceEEEEEECchhhhhh-----hccchHhhhchhc---------
Confidence            321                              11578999999999997532     0000111222222         


Q ss_pred             hcccCCcCCccccccccccccCCCCChHHHHHH----------HHhcCCeEEEEecCCCCChHHHHHHHHHHHHH
Q psy17467        187 ASLEGHSNNIHCMARNKIDREDREIPTEVGEDF----------AKRHDMYYLETSAKASDNVEKLFMQIAAELME  251 (730)
Q Consensus       187 ~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~l----------ak~lg~~fvEtSAktG~GVeeLFe~Li~~l~e  251 (730)
                                          ..+.++.+++.++          +...++.+++|||+++.||+.+|..+.+.+++
T Consensus       264 --------------------~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~  318 (327)
T 3ohm_A          264 --------------------DGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  318 (327)
T ss_dssp             --------------------CSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             --------------------cCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHH
Confidence                                2345677888888          34567789999999999999999999998864

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.70  E-value=1.7e-17  Score=178.95  Aligned_cols=158  Identities=20%  Similarity=0.229  Sum_probs=116.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh----hhhhhHhhhc---cc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER----FRSITQSYYR---SA   80 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~----~~sl~~~~~r---~A   80 (730)
                      .+|+|+|.+|||||||++++++.......+|..+.+.....+.+++. ..+.||||||..+    +..+...+++   .+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            36899999999999999999987654444444444444455666542 4689999999643    3335555544   59


Q ss_pred             cEEEEEeecCC---CCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467         81 HALILVYDISC---QPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE  157 (730)
Q Consensus        81 DaIILVyDvtd---~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~  157 (730)
                      |++|+|+|+++   +.+++++..|+.++..+..                             ...+.|+++|+||+|+.+
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~-----------------------------~l~~~p~ilV~NK~Dl~~  288 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNL-----------------------------RLTERPQIIVANKMDMPE  288 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCS-----------------------------STTTSCBCBEEECTTSTT
T ss_pred             cEEEEEEECCcccccChHHHHHHHHHHHHHhhh-----------------------------hhcCCCEEEEEECccCCC
Confidence            99999999999   8889999989988865421                             113567777777777743


Q ss_pred             hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC--CeEEEEecCCC
Q psy17467        158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD--MYYLETSAKAS  235 (730)
Q Consensus       158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg--~~fvEtSAktG  235 (730)
                      .                                                      .+..+++++.++  +++++|||+++
T Consensus       289 ~------------------------------------------------------~e~~~~l~~~l~~~~~v~~iSA~tg  314 (342)
T 1lnz_A          289 A------------------------------------------------------AENLEAFKEKLTDDYPVFPISAVTR  314 (342)
T ss_dssp             H------------------------------------------------------HHHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred             C------------------------------------------------------HHHHHHHHHHhhcCCCEEEEECCCC
Confidence            1                                                      133455666665  68999999999


Q ss_pred             CChHHHHHHHHHHH
Q psy17467        236 DNVEKLFMQIAAEL  249 (730)
Q Consensus       236 ~GVeeLFe~Li~~l  249 (730)
                      .||+++|+.|.+.+
T Consensus       315 ~gi~eL~~~l~~~l  328 (342)
T 1lnz_A          315 EGLRELLFEVANQL  328 (342)
T ss_dssp             STTHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHH
Confidence            99999999998877

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.69  E-value=1.8e-16  Score=171.60  Aligned_cols=139  Identities=16%  Similarity=0.221  Sum_probs=103.2

Q ss_pred             EEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCC----------CCchhhhHHHHHHHHHHhcccceE
Q psy17467         46 IKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISC----------QPTFDCLTDWLREIEEYASFKVLR  115 (730)
Q Consensus        46 ~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd----------~eSfe~L~~wleeI~~~~~~~~pi  115 (730)
                      ...+.+++  +.+++|||+|++.++..|..|++++++||+|||+++          ..++++...|++.+....      
T Consensus       185 ~~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~------  256 (353)
T 1cip_A          185 ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK------  256 (353)
T ss_dssp             EEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG------
T ss_pred             EEEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc------
Confidence            34455555  889999999999999999999999999999999999          455777777777765421      


Q ss_pred             EEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCC
Q psy17467        116 VLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNN  195 (730)
Q Consensus       116 VLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~  195 (730)
                                              .-.++|++|+|||.|+.+..-     ....+..++|.+                  
T Consensus       257 ------------------------~~~~~piiLv~NK~DL~~~ki-----~~~~l~~~fp~~------------------  289 (353)
T 1cip_A          257 ------------------------WFTDTSIILFLNKKDLFEEKI-----KKSPLTICYPEY------------------  289 (353)
T ss_dssp             ------------------------GGTTSEEEEEEECHHHHHHHH-----TTSCGGGTCTTC------------------
T ss_pred             ------------------------cccCCcEEEEEECcCchhhhc-----cccchhhccccc------------------
Confidence                                    115689999999999964210     000111122211                  


Q ss_pred             ccccccccccccCCCCChHHHHHHHH-----------hcCCeEEEEecCCCCChHHHHHHHHHHHHH
Q psy17467        196 IHCMARNKIDREDREIPTEVGEDFAK-----------RHDMYYLETSAKASDNVEKLFMQIAAELME  251 (730)
Q Consensus       196 ~~ivVgNK~DL~~R~Vs~ee~~~lak-----------~lg~~fvEtSAktG~GVeeLFe~Li~~l~e  251 (730)
                                 . ..++.+++.+++.           ..++.+++|||++|.||+++|+++.+.+..
T Consensus       290 -----------~-g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~  344 (353)
T 1cip_A          290 -----------A-GSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  344 (353)
T ss_dssp             -----------C-SCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             -----------C-CCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence                       1 1367788888886           357789999999999999999999998854

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.69  E-value=1e-16  Score=163.60  Aligned_cols=84  Identities=19%  Similarity=0.245  Sum_probs=65.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCCc-ceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh-----------h
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGV-FPPGQGAT-IGVDFMIKTVEINNERIKLQIWDTAGQERFRS-----------I   72 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~-f~~~~~pT-ig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s-----------l   72 (730)
                      ..++|+|+|.+|||||||+++|++.. +...+.++ ++.+.....+.+++  ..+.||||||...+..           .
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~   98 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQRC   98 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence            46899999999999999999999877 55555554 45556666677777  6799999999865422           2


Q ss_pred             hHhhhccccEEEEEeecCC
Q psy17467         73 TQSYYRSAHALILVYDISC   91 (730)
Q Consensus        73 ~~~~~r~ADaIILVyDvtd   91 (730)
                      ...+++.+|++|+|+|+++
T Consensus        99 ~~~~~~~~d~il~V~d~~~  117 (260)
T 2xtp_A           99 YLLSAPGPHVLLLVTQLGR  117 (260)
T ss_dssp             HHHHTTCCSEEEEEEETTC
T ss_pred             HHhcCCCCcEEEEEEeCCC
Confidence            2336789999999999985

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.69  E-value=1.6e-17  Score=183.98  Aligned_cols=156  Identities=19%  Similarity=0.196  Sum_probs=112.6

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhh-------hHh
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSI-------TQS   75 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl-------~~~   75 (730)
                      ....++|+|+|..|||||||+++|++..+. ....+.++.+.....+.+.+. ..+.+|||||+.++..+       ...
T Consensus        31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~  109 (423)
T 3qq5_A           31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARR  109 (423)
T ss_dssp             -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHH
Confidence            345689999999999999999999988763 334455556677777777664 27899999999877654       345


Q ss_pred             hhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCc
Q psy17467         76 YYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDL  155 (730)
Q Consensus        76 ~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL  155 (730)
                      +++.+|++|+|+|++.   .+....|+..+..                                  .+.|+++|+||+|+
T Consensus       110 ~l~~aD~vllVvD~~~---~~~~~~~l~~l~~----------------------------------~~~piIvV~NK~Dl  152 (423)
T 3qq5_A          110 VFYRADCGILVTDSAP---TPYEDDVVNLFKE----------------------------------MEIPFVVVVNKIDV  152 (423)
T ss_dssp             HHTSCSEEEEECSSSC---CHHHHHHHHHHHH----------------------------------TTCCEEEECCCCTT
T ss_pred             HHhcCCEEEEEEeCCC---hHHHHHHHHHHHh----------------------------------cCCCEEEEEeCcCC
Confidence            7889999999999832   2333557666643                                  25678888888888


Q ss_pred             chhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCC
Q psy17467        156 DEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKAS  235 (730)
Q Consensus       156 ~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG  235 (730)
                      .+.                                                  +.  .+.++++++.+++++++|||++|
T Consensus       153 ~~~--------------------------------------------------~~--~~~~~~l~~~~g~~v~~vSAktg  180 (423)
T 3qq5_A          153 LGE--------------------------------------------------KA--EELKGLYESRYEAKVLLVSALQK  180 (423)
T ss_dssp             TTC--------------------------------------------------CC--THHHHHSSCCTTCCCCCCSSCCT
T ss_pred             CCc--------------------------------------------------cH--HHHHHHHHHHcCCCEEEEECCCC
Confidence            531                                                  11  15667778888999999999999


Q ss_pred             CChHHHHHHHHHHH
Q psy17467        236 DNVEKLFMQIAAEL  249 (730)
Q Consensus       236 ~GVeeLFe~Li~~l  249 (730)
                      .|++++|+.|.+.+
T Consensus       181 ~gI~eL~~~L~~~l  194 (423)
T 3qq5_A          181 KGFDDIGKTISEIL  194 (423)
T ss_dssp             TSTTTHHHHHHHHS
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999999999877

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.68  E-value=1.8e-17  Score=183.13  Aligned_cols=150  Identities=19%  Similarity=0.167  Sum_probs=98.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCch--------hhhhhhHhhhc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPP-GQGATIGVDFMIKTVEINNERIKLQIWDTAGQE--------RFRSITQSYYR   78 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~-~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e--------~~~sl~~~~~r   78 (730)
                      .+|+++|++|||||||+|+|++..+.. ...|.++.+.....+.+++  ..+.+|||+|.+        .+...+..+++
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   81 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD   81 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            689999999999999999999876642 2334444344444444444  679999999985        56667778899


Q ss_pred             cccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchh
Q psy17467         79 SAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDED  158 (730)
Q Consensus        79 ~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~  158 (730)
                      .||++|+|+|++++.++.+  .|+..+.+                                 ..+.|+++|+||+|+.+.
T Consensus        82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~---------------------------------~~~~pvilv~NK~D~~~~  126 (436)
T 2hjg_A           82 EADVIIFMVNGREGVTAAD--EEVAKILY---------------------------------RTKKPVVLAVNKLDNTEM  126 (436)
T ss_dssp             HCSEEEEEEETTTCSCHHH--HHHHHHHT---------------------------------TCCSCEEEEEECCCC---
T ss_pred             hCCEEEEEEeCCCCCCHHH--HHHHHHHH---------------------------------HcCCCEEEEEECccCccc
Confidence            9999999999999877654  23333221                                 146788999999998531


Q ss_pred             hHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCC
Q psy17467        159 EHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDN  237 (730)
Q Consensus       159 e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~G  237 (730)
                      ..                                                 .     +.++. .+|+ .++++||++|.|
T Consensus       127 ~~-------------------------------------------------~-----~~~~~-~lg~~~~~~iSA~~g~g  151 (436)
T 2hjg_A          127 RA-------------------------------------------------N-----IYDFY-SLGFGEPYPISGTHGLG  151 (436)
T ss_dssp             ---------------------------------------------------C-----CCSSG-GGSSCCCEECBTTTTBT
T ss_pred             hh-------------------------------------------------h-----HHHHH-HcCCCCeEEEeCcCCCC
Confidence            10                                                 0     00111 2354 689999999999


Q ss_pred             hHHHHHHHHHHH
Q psy17467        238 VEKLFMQIAAEL  249 (730)
Q Consensus       238 VeeLFe~Li~~l  249 (730)
                      ++++|+.+.+.+
T Consensus       152 v~~L~~~i~~~l  163 (436)
T 2hjg_A          152 LGDLLDAVAEHF  163 (436)
T ss_dssp             HHHHHHHHHHTG
T ss_pred             hHHHHHHHHHhc
Confidence            999999998766

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.67  E-value=5.8e-16  Score=156.32  Aligned_cols=168  Identities=18%  Similarity=0.116  Sum_probs=110.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCC--cceeeEEEEEEEeCCeEEEEEEEeCCCc-----------hhhhh
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGA--TIGVDFMIKTVEINNERIKLQIWDTAGQ-----------ERFRS   71 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~p--Tig~d~~~~~i~vdg~~v~LqLwDTpG~-----------e~~~s   71 (730)
                      ...+||+|+|++|||||||+|++++..+.....+  +++.+.....+.+++  ..+.||||||.           ..+..
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~  104 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIR  104 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHH
Confidence            4568999999999999999999999888666555  455556666777777  57899999994           33444


Q ss_pred             hhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEecc
Q psy17467         72 ITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASD  151 (730)
Q Consensus        72 l~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGN  151 (730)
                      ....+++.+|++|+|+|+++..+  ....|+..+.....                             .....|+++|+|
T Consensus       105 ~~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~-----------------------------~~~~~~~iiv~n  153 (239)
T 3lxx_A          105 CILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFG-----------------------------ERARSFMILIFT  153 (239)
T ss_dssp             HHHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHH-----------------------------HHHGGGEEEEEE
T ss_pred             HHHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhh-----------------------------hhccceEEEEEe
Confidence            45556778899999999986444  22345555433221                             012357888899


Q ss_pred             CCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEe
Q psy17467        152 KTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETS  231 (730)
Q Consensus       152 K~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtS  231 (730)
                      |+|+.+.....                                          +.  -....+..+++++..|..|+.++
T Consensus       154 K~D~~~~~~~~------------------------------------------~~--i~~~~~~l~~l~~~~~~~~~~~~  189 (239)
T 3lxx_A          154 RKDDLGDTNLH------------------------------------------DY--LREAPEDIQDLMDIFGDRYCALN  189 (239)
T ss_dssp             CGGGC--------------------------------------------------------CHHHHHHHHHHSSSEEECC
T ss_pred             CCccCCcccHH------------------------------------------HH--HHhchHHHHHHHHHcCCEEEEEE
Confidence            99986432100                                          00  00112467888888898888888


Q ss_pred             cCCC-----CChHHHHHHHHHHH
Q psy17467        232 AKAS-----DNVEKLFMQIAAEL  249 (730)
Q Consensus       232 AktG-----~GVeeLFe~Li~~l  249 (730)
                      +..+     .||.++|+.+.+.+
T Consensus       190 ~~~~~~~~~~~v~~ll~~i~~~~  212 (239)
T 3lxx_A          190 NKATGAEQEAQRAQLLGLIQRVV  212 (239)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCccccHHHHHHHHHHHHHHH
Confidence            7654     67888888777665

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.66  E-value=5e-17  Score=181.76  Aligned_cols=150  Identities=21%  Similarity=0.197  Sum_probs=102.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhH--------hhh
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQ--------SYY   77 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~--------~~~   77 (730)
                      .+||+++|.+|||||||+|+|++..+. ....++++.+.....+.+++  ..+.+|||||..++....+        .++
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~  301 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAA  301 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CCC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence            479999999999999999999987543 44456666666666777888  5689999999866543332        357


Q ss_pred             ccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467         78 RSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE  157 (730)
Q Consensus        78 r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~  157 (730)
                      +.+|++|+|+|++++.+++. ..|+..+                                    .+.|+++|+||+|+.+
T Consensus       302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l------------------------------------~~~piivV~NK~Dl~~  344 (462)
T 3geh_A          302 NTADLVLLTIDAATGWTTGD-QEIYEQV------------------------------------KHRPLILVMNKIDLVE  344 (462)
T ss_dssp             CSCSEEEEEEETTTCSCHHH-HHHHHHH------------------------------------TTSCEEEEEECTTSSC
T ss_pred             hcCCEEEEEeccCCCCCHHH-HHHHHhc------------------------------------cCCcEEEEEECCCCCc
Confidence            89999999999999877655 3444443                                    2257888899999864


Q ss_pred             hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCC
Q psy17467        158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDN  237 (730)
Q Consensus       158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~G  237 (730)
                      ...                                                  +.  ..++++  .+.++++|||++|.|
T Consensus       345 ~~~--------------------------------------------------~~--~~~~~~--~~~~~i~iSAktg~G  370 (462)
T 3geh_A          345 KQL--------------------------------------------------IT--SLEYPE--NITQIVHTAAAQKQG  370 (462)
T ss_dssp             GGG--------------------------------------------------ST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred             chh--------------------------------------------------hH--HHHHhc--cCCcEEEEECCCCCC
Confidence            211                                                  00  000001  356899999999999


Q ss_pred             hHHHHHHHHHHH
Q psy17467        238 VEKLFMQIAAEL  249 (730)
Q Consensus       238 VeeLFe~Li~~l  249 (730)
                      |+++|+.|.+.+
T Consensus       371 i~eL~~~i~~~~  382 (462)
T 3geh_A          371 IDSLETAILEIV  382 (462)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998876

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.66  E-value=5.6e-16  Score=169.15  Aligned_cols=247  Identities=17%  Similarity=0.099  Sum_probs=174.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh----hh---Hhhhcc
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS----IT---QSYYRS   79 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s----l~---~~~~r~   79 (730)
                      ..+|++||.||||||||+|++++.......+|..+.+.....+.+++  .+++++||||..+..+    +.   -..++.
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~  149 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART  149 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence            35899999999999999999999887777778888899999999998  6789999999643221    11   234789


Q ss_pred             ccEEEEEeecCCCCchhhhHHHHHHHHHHh--cccceEEEEecc----------------CchhhHHHHHhhhcccccCC
Q psy17467         80 AHALILVYDISCQPTFDCLTDWLREIEEYA--SFKVLRVLVGGT----------------SGLKIVNEMASAAGLLCTVD  141 (730)
Q Consensus        80 ADaIILVyDvtd~eSfe~L~~wleeI~~~~--~~~~piVLVg~k----------------~dl~~~~~i~~~~g~~~~~~  141 (730)
                      ||++++|+|++++..  +......++....  -...|..++.++                .+.+.++.++..+.+     
T Consensus       150 ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~l-----  222 (376)
T 4a9a_A          150 CNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRI-----  222 (376)
T ss_dssp             CSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTC-----
T ss_pred             cCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcc-----
Confidence            999999999987632  2222223333221  113344445455                234556667766666     


Q ss_pred             CCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH
Q psy17467        142 PALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK  221 (730)
Q Consensus       142 ~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak  221 (730)
                      .+.|+++++| ++..+-                         ..........+.|.+++.||+|.    .+.++.+.+.+
T Consensus       223 t~kpv~~~~n-v~eddl-------------------------~d~~~~~~~~~~p~i~v~nKid~----~~~eele~l~~  272 (376)
T 4a9a_A          223 NSAEIAFRCD-ATVDDL-------------------------IDVLEASSRRYMPAIYVLNKIDS----LSIEELELLYR  272 (376)
T ss_dssp             CSEEEEECSC-CCHHHH-------------------------HHHHTTTTCEEECEEEEEECGGG----SCHHHHHHHTT
T ss_pred             cCCCeeeccc-CCHHHH-------------------------HHHHHHHHhhccceEEEEecccc----cCHHHHHHHhc
Confidence            4557776665 222210                         11122345678899999999996    34455555443


Q ss_pred             hcCCeEEEEecCCCCChHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccc-hhhHHHHHH
Q psy17467        222 RHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDK-SLESCIKQI  300 (730)
Q Consensus       222 ~lg~~fvEtSAktG~GVeeLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~-~~~~~~~~~  300 (730)
                      .  -.++++|+..+.|++++.+.+++.+                 .++++|++.+....++.-|..+..+ ++..+++..
T Consensus       273 ~--~~~~~is~~~e~gLd~Li~~~y~~L-----------------~Li~~fT~g~~E~rawt~~~~~~a~~at~~D~a~~  333 (376)
T 4a9a_A          273 I--PNAVPISSGQDWNLDELLQVMWDRL-----------------NLVRIYTKPKGQIPDFTDPVVLRSDRCSVKDFCNQ  333 (376)
T ss_dssp             S--TTEEECCTTTCTTHHHHHHHHHHHH-----------------CCEEEEECCSSSCCCSSSCEEEBTTBCBHHHHHHH
T ss_pred             c--cchhhhhhhhcccchhHHHHHHHHc-----------------CCcEEEeCCCCCcCCCCccccccCCCCcHHHHHHH
Confidence            2  2478999999999999999999998                 8999999999888888888777655 778888876


Q ss_pred             -hhcCCCCceee
Q psy17467        301 -VKKFPNIDIKS  311 (730)
Q Consensus       301 -~k~~p~~~~~~  311 (730)
                       |+++...|...
T Consensus       334 ih~d~~~~F~~a  345 (376)
T 4a9a_A          334 IHKSLVDDFRNA  345 (376)
T ss_dssp             HCGGGGGGEEEE
T ss_pred             HHHHHHHhhhHh
Confidence             88888877644

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.66  E-value=2.9e-15  Score=163.95  Aligned_cols=159  Identities=17%  Similarity=0.142  Sum_probs=114.1

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEE---------------------e---CCeEEEEE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVE---------------------I---NNERIKLQ   59 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~---------------------v---dg~~v~Lq   59 (730)
                      ++..+||+++|.+|||||||+++|++......    .+  +....+.                     +   ......+.
T Consensus         5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (403)
T 3sjy_A            5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKK----LG--YAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRIS   78 (403)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSS----SE--EEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEE
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCcccccc----cC--ccccceeeccccccccceecccccccccccccccccceEE
Confidence            45669999999999999999999997543321    11  1111110                     0   11236899


Q ss_pred             EEeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhccccc
Q psy17467         60 IWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCT  139 (730)
Q Consensus        60 LwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~  139 (730)
                      +|||||+++|......++..+|++|+|+|+++..++....+|+..+....                              
T Consensus        79 iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~------------------------------  128 (403)
T 3sjy_A           79 FIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG------------------------------  128 (403)
T ss_dssp             EEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT------------------------------
T ss_pred             EEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC------------------------------
Confidence            99999999999988999999999999999999888888888877664321                              


Q ss_pred             CCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHH
Q psy17467        140 VDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDF  219 (730)
Q Consensus       140 ~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~l  219 (730)
                         ..|+++|+||+|+.+.+....                                                ..++..++
T Consensus       129 ---~~~iivviNK~Dl~~~~~~~~------------------------------------------------~~~~i~~~  157 (403)
T 3sjy_A          129 ---VKNLIIVQNKVDVVSKEEALS------------------------------------------------QYRQIKQF  157 (403)
T ss_dssp             ---CCCEEEEEECGGGSCHHHHHH------------------------------------------------HHHHHHHH
T ss_pred             ---CCCEEEEEECccccchHHHHH------------------------------------------------HHHHHHHH
Confidence               247888899999875332100                                                11223333


Q ss_pred             HHhc---CCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467        220 AKRH---DMYYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       220 ak~l---g~~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                      ....   +++++++||++|.||+++|+.|.+.+
T Consensus       158 l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l  190 (403)
T 3sjy_A          158 TKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  190 (403)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence            3322   56899999999999999999998655

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.65  E-value=7.7e-16  Score=166.80  Aligned_cols=139  Identities=17%  Similarity=0.151  Sum_probs=95.8

Q ss_pred             eEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecC----------CCCchhhhHHHHHHHHHHhcccceEEEEeccCc
Q psy17467         54 ERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDIS----------CQPTFDCLTDWLREIEEYASFKVLRVLVGGTSG  123 (730)
Q Consensus        54 ~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvt----------d~eSfe~L~~wleeI~~~~~~~~piVLVg~k~d  123 (730)
                      ..+.+++|||+|+++++++|..|+++++++|+|||++          +..+|+++..|++.+....              
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~--------------  246 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP--------------  246 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCG--------------
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcc--------------
Confidence            5789999999999999999999999999999999998          7888888888888875432              


Q ss_pred             hhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhc--ccccccchhhhhhhcccCCcCCcccccc
Q psy17467        124 LKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVC--IPKLARNEACFYLASLEGHSNNIHCMAR  201 (730)
Q Consensus       124 l~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~--~p~~~~~~~~~~~~~~~~~~~~~~ivVg  201 (730)
                                      ..+++|++|+|||+|+.+....     ......|  +|.....                     
T Consensus       247 ----------------~~~~~piiLvgNK~DL~~~k~~-----~v~l~~~~~fp~y~~~---------------------  284 (354)
T 2xtz_A          247 ----------------CFEKTSFMLFLNKFDIFEKKVL-----DVPLNVCEWFRDYQPV---------------------  284 (354)
T ss_dssp             ----------------GGSSCEEEEEEECHHHHHHHTT-----TSCGGGSGGGTTCCCC---------------------
T ss_pred             ----------------ccCCCeEEEEEECcchhhhhcc-----cccccccccccccccc---------------------
Confidence                            1157899999999999643100     0000001  1211000                     


Q ss_pred             ccccccCCCCChHHHHHHHHh----------------cCCeEEEEecCCCCChHHHHHHHHHHHHHHH
Q psy17467        202 NKIDREDREIPTEVGEDFAKR----------------HDMYYLETSAKASDNVEKLFMQIAAELMEKL  253 (730)
Q Consensus       202 NK~DL~~R~Vs~ee~~~lak~----------------lg~~fvEtSAktG~GVeeLFe~Li~~l~e~~  253 (730)
                           .....+.+++.+++..                ..+.+++|||++|.||+++|+++.+.+....
T Consensus       285 -----~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~~~  347 (354)
T 2xtz_A          285 -----SSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRN  347 (354)
T ss_dssp             -----SSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             -----cCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHHHH
Confidence                 0001134666666432                2345799999999999999999999886543

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.65  E-value=9.8e-16  Score=165.20  Aligned_cols=145  Identities=17%  Similarity=0.260  Sum_probs=103.4

Q ss_pred             CcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecC----------CCCchhhhHHHHHHHHH
Q psy17467         38 ATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDIS----------CQPTFDCLTDWLREIEE  107 (730)
Q Consensus        38 pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvt----------d~eSfe~L~~wleeI~~  107 (730)
                      +|+|.  ....+.+++  +.+++|||+|+++++++|..|+++++++|+|||++          +..+|++...|+..+..
T Consensus       147 ~TiGi--~~~~~~~~~--v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~  222 (340)
T 4fid_A          147 KTTGI--HEYDFVVKD--IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMT  222 (340)
T ss_dssp             CCCSC--EEEEEESSS--CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHH
T ss_pred             ceeee--EEEEEEeee--eeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhh
Confidence            44553  233444444  88999999999999999999999999999999999          67788888888887755


Q ss_pred             HhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhh
Q psy17467        108 YASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLA  187 (730)
Q Consensus       108 ~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~  187 (730)
                      ..                              .-.++|++|+|||+|+.+..-     .......++|...+        
T Consensus       223 ~~------------------------------~~~~~piiLv~NK~DL~~eki-----~~~~l~~~fp~y~g--------  259 (340)
T 4fid_A          223 NE------------------------------FLKGAVKLIFLNKMDLFEEKL-----TKVPLNTIFPEYTG--------  259 (340)
T ss_dssp             CG------------------------------GGTTSEEEEEEECHHHHHHHH-----HHSCGGGTCTTCCC--------
T ss_pred             hh------------------------------ccCCCeEEEEEECchhhhhhc-----CcchHHHhhhhhcC--------
Confidence            32                              115788999999999975321     11112333343311        


Q ss_pred             cccCCcCCccccccccccccCCCCChHHHHHHHHh---------------------------cCCeEEEEecCCCCChHH
Q psy17467        188 SLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR---------------------------HDMYYLETSAKASDNVEK  240 (730)
Q Consensus       188 ~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~---------------------------lg~~fvEtSAktG~GVee  240 (730)
                                           . ...+++.+++..                           .++.+++|||+++.||+.
T Consensus       260 ---------------------~-~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~  317 (340)
T 4fid_A          260 ---------------------G-DNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKR  317 (340)
T ss_dssp             ---------------------T-TCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHH
T ss_pred             ---------------------C-CCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHH
Confidence                                 1 134555443322                           246799999999999999


Q ss_pred             HHHHHHHHHHH
Q psy17467        241 LFMQIAAELME  251 (730)
Q Consensus       241 LFe~Li~~l~e  251 (730)
                      +|..+.+.++.
T Consensus       318 vF~~v~~~Il~  328 (340)
T 4fid_A          318 VFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999976

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.63  E-value=1.2e-16  Score=172.94  Aligned_cols=162  Identities=20%  Similarity=0.272  Sum_probs=96.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCC-CCCCC--------CCcceeeEEEEEEEeCCeEEEEEEEeCCCc-------hh
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGV-FPPGQ--------GATIGVDFMIKTVEINNERIKLQIWDTAGQ-------ER   68 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~-f~~~~--------~pTig~d~~~~~i~vdg~~v~LqLwDTpG~-------e~   68 (730)
                      +..++|+|+|++|||||||++++++.. +...+        .++++.+.....+..++..+.+.+|||+|.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            456899999999999999999987643 33322        256665555555566777789999999998       66


Q ss_pred             hhhhhH-------hhhccccEE-----------EEEeecCC-CCchhhhHH-HHHHHHHHhcccceEEEEeccCchhhHH
Q psy17467         69 FRSITQ-------SYYRSAHAL-----------ILVYDISC-QPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLKIVN  128 (730)
Q Consensus        69 ~~sl~~-------~~~r~ADaI-----------ILVyDvtd-~eSfe~L~~-wleeI~~~~~~~~piVLVg~k~dl~~~~  128 (730)
                      +..++.       .|++.++++           ++||++++ ..++..+.. |+..+                       
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-----------------------  171 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-----------------------  171 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-----------------------
Confidence            766766       777766654           48888876 667776652 33332                       


Q ss_pred             HHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccC
Q psy17467        129 EMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDRED  208 (730)
Q Consensus       129 ~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~  208 (730)
                                  ..+.|+++|+||+|+.+.....                                              
T Consensus       172 ------------~~~~piIlV~NK~Dl~~~~ev~----------------------------------------------  193 (361)
T 2qag_A          172 ------------HNKVNIVPVIAKADTLTLKERE----------------------------------------------  193 (361)
T ss_dssp             ------------CS-SCEEEEEECCSSSCHHHHH----------------------------------------------
T ss_pred             ------------ccCCCEEEEEECCCCCCHHHHH----------------------------------------------
Confidence                        1467889999999986432110                                              


Q ss_pred             CCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHHHHH
Q psy17467        209 REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELM  250 (730)
Q Consensus       209 R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~~l~  250 (730)
                        ...+++.+++..+++++++|||++|.| ++.|..+++.+.
T Consensus       194 --~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~  232 (361)
T 2qag_A          194 --RLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLK  232 (361)
T ss_dssp             --HHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHH
T ss_pred             --HHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHH
Confidence              012567778888899999999999999 899998888774

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.63  E-value=1.3e-16  Score=153.64  Aligned_cols=118  Identities=18%  Similarity=0.341  Sum_probs=88.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCC---CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhcc--
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPP---GQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS--   79 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~---~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~--   79 (730)
                      ...++|+|+|++|||||||+++|++..+..   .+.++.+.++         ..+.+.+|||||.+.+...+..+++.  
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~  116 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRA  116 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence            456899999999999999999999987654   2333333221         33678999999999888888877776  


Q ss_pred             --ccEEEEEeecC-CCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467         80 --AHALILVYDIS-CQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD  156 (730)
Q Consensus        80 --ADaIILVyDvt-d~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~  156 (730)
                        +|++|+|||++ ++.+|+.+..|+..+.....                           ....++.|+++|+||+|+.
T Consensus       117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~p~ilv~nK~Dl~  169 (193)
T 2ged_A          117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITE---------------------------SSCENGIDILIACNKSELF  169 (193)
T ss_dssp             GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHH---------------------------HHSTTCCCEEEEEECTTST
T ss_pred             ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhh---------------------------hccccCCCEEEEEEchHhc
Confidence              89999999999 88999999999888765431                           0022578999999999997


Q ss_pred             hh
Q psy17467        157 ED  158 (730)
Q Consensus       157 ~~  158 (730)
                      +.
T Consensus       170 ~~  171 (193)
T 2ged_A          170 TA  171 (193)
T ss_dssp             TC
T ss_pred             CC
Confidence            53

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.62  E-value=2e-15  Score=169.50  Aligned_cols=159  Identities=17%  Similarity=0.210  Sum_probs=108.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCC-------CCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhc
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGV-------FPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYR   78 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~-------f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r   78 (730)
                      ..++|+++|..++|||||+++|++..       +.....+.++.+.....+.+++  ..+.+|||||+++|......++.
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~   95 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD   95 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHHh
Confidence            46899999999999999999999876       2333333344444444556666  78999999999999888888999


Q ss_pred             cccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchh
Q psy17467         79 SAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDED  158 (730)
Q Consensus        79 ~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~  158 (730)
                      .+|++|+|+|+++...-+. .+++..+..                                  .+.|+++|+||+|+.+.
T Consensus        96 ~aD~~ilVvda~~g~~~qt-~e~l~~~~~----------------------------------~~ip~IvviNK~Dl~~~  140 (482)
T 1wb1_A           96 IIDLALIVVDAKEGPKTQT-GEHMLILDH----------------------------------FNIPIIVVITKSDNAGT  140 (482)
T ss_dssp             SCCEEEEEEETTTCSCHHH-HHHHHHHHH----------------------------------TTCCBCEEEECTTSSCH
T ss_pred             hCCEEEEEEecCCCccHHH-HHHHHHHHH----------------------------------cCCCEEEEEECCCcccc
Confidence            9999999999998532222 122222211                                  24677888899998642


Q ss_pred             hHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc----CCeEEEEecCC
Q psy17467        159 EHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH----DMYYLETSAKA  234 (730)
Q Consensus       159 e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l----g~~fvEtSAkt  234 (730)
                      +..                                                ....++.++++...    +++++++||++
T Consensus       141 ~~~------------------------------------------------~~~~~~l~~~l~~~~~~~~~~ii~vSA~~  172 (482)
T 1wb1_A          141 EEI------------------------------------------------KRTEMIMKSILQSTHNLKNSSIIPISAKT  172 (482)
T ss_dssp             HHH------------------------------------------------HHHHHHHHHHHHHSSSGGGCCEEECCTTT
T ss_pred             hhH------------------------------------------------HHHHHHHHHHHhhhcccccceEEEEECcC
Confidence            210                                                01123455555544    57899999999


Q ss_pred             CCChHHHHHHHHHHH
Q psy17467        235 SDNVEKLFMQIAAEL  249 (730)
Q Consensus       235 G~GVeeLFe~Li~~l  249 (730)
                      |.||+++++.|.+.+
T Consensus       173 g~gI~~L~~~L~~~i  187 (482)
T 1wb1_A          173 GFGVDELKNLIITTL  187 (482)
T ss_dssp             CTTHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhh
Confidence            999999999998876

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.62  E-value=3.8e-15  Score=161.78  Aligned_cols=160  Identities=21%  Similarity=0.159  Sum_probs=106.0

Q ss_pred             eE-EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCch---------hhhhhhHhhh
Q psy17467          8 FK-VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE---------RFRSITQSYY   77 (730)
Q Consensus         8 iK-IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e---------~~~sl~~~~~   77 (730)
                      ++ |+++|.+|||||||+|++++..+.....+..+.++....+.+++  ..+.+|||+|..         .+.... ..+
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~  255 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEA  255 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HGG
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HHH
Confidence            44 99999999999999999999877555555566667778888888  568999999962         233332 357


Q ss_pred             ccccEEEEEeecCCCC--chhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCc
Q psy17467         78 RSAHALILVYDISCQP--TFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDL  155 (730)
Q Consensus        78 r~ADaIILVyDvtd~e--Sfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL  155 (730)
                      ..||++++|+|++++.  +++.+..|.+.+....                          .     .+.|+++|+||+|+
T Consensus       256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~--------------------------~-----~~~p~ilV~NK~Dl  304 (364)
T 2qtf_A          256 KYSDALILVIDSTFSENLLIETLQSSFEILREIG--------------------------V-----SGKPILVTLNKIDK  304 (364)
T ss_dssp             GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT--------------------------C-----CSCCEEEEEECGGG
T ss_pred             HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhC--------------------------c-----CCCCEEEEEECCCC
Confidence            8999999999999886  5555555554443321                          1     35678888888887


Q ss_pred             chhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc---CCeEEEEec
Q psy17467        156 DEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH---DMYYLETSA  232 (730)
Q Consensus       156 ~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l---g~~fvEtSA  232 (730)
                      .+....                                                 ...+.+..++..+   +..++++||
T Consensus       305 ~~~~~~-------------------------------------------------~~~~~~~~l~~~l~~~~~~~~~~SA  335 (364)
T 2qtf_A          305 INGDLY-------------------------------------------------KKLDLVEKLSKELYSPIFDVIPISA  335 (364)
T ss_dssp             CCSCHH-------------------------------------------------HHHHHHHHHHHHHCSCEEEEEECBT
T ss_pred             CCchHH-------------------------------------------------HHHHHHHHHHHHhcCCCCcEEEEEC
Confidence            531100                                                 0012333344544   346899999


Q ss_pred             CCCCChHHHHHHHHHHHH
Q psy17467        233 KASDNVEKLFMQIAAELM  250 (730)
Q Consensus       233 ktG~GVeeLFe~Li~~l~  250 (730)
                      ++|.|++++++.|.+.+.
T Consensus       336 ~~g~gi~~L~~~I~~~l~  353 (364)
T 2qtf_A          336 LKRTNLELLRDKIYQLAT  353 (364)
T ss_dssp             TTTBSHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHhc
Confidence            999999999999988763

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.62  E-value=2.9e-15  Score=172.41  Aligned_cols=157  Identities=18%  Similarity=0.256  Sum_probs=108.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCC--CC-----CCCC------CcceeeEEEE--EEEe---CCeEEEEEEEeCCCch
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGV--FP-----PGQG------ATIGVDFMIK--TVEI---NNERIKLQIWDTAGQE   67 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~--f~-----~~~~------pTig~d~~~~--~i~v---dg~~v~LqLwDTpG~e   67 (730)
                      ...+|+|+|..++|||||+++|+...  ..     ....      .+.|.+....  .+.+   ++..+.++||||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            45799999999999999999998621  11     0110      1223333322  2333   5567899999999999


Q ss_pred             hhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceE
Q psy17467         68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATA  147 (730)
Q Consensus        68 ~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVV  147 (730)
                      +|...+..+++.+|++|+|+|+++..+++....|...+.                                   .+.|++
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----------------------------------~~ipiI  127 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----------------------------------MDLEVV  127 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----------------------------------TTCEEE
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----------------------------------CCCCEE
Confidence            999999999999999999999999999888877765542                                   356778


Q ss_pred             EeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC--
Q psy17467        148 LASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM--  225 (730)
Q Consensus       148 LVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~--  225 (730)
                      +|+||+|+....                                                    ..+..++++..+++  
T Consensus       128 vViNKiDl~~a~----------------------------------------------------~~~v~~ei~~~lg~~~  155 (599)
T 3cb4_D          128 PVLNKIDLPAAD----------------------------------------------------PERVAEEIEDIVGIDA  155 (599)
T ss_dssp             EEEECTTSTTCC----------------------------------------------------HHHHHHHHHHHTCCCC
T ss_pred             EeeeccCccccc----------------------------------------------------HHHHHHHHHHHhCCCc
Confidence            888888885310                                                    12234455556665  


Q ss_pred             -eEEEEecCCCCChHHHHHHHHHHH
Q psy17467        226 -YYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       226 -~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                       .++++||++|.||+++|+.+++.+
T Consensus       156 ~~vi~vSAktg~GI~~Ll~~I~~~l  180 (599)
T 3cb4_D          156 TDAVRCSAKTGVGVQDVLERLVRDI  180 (599)
T ss_dssp             TTCEEECTTTCTTHHHHHHHHHHHS
T ss_pred             ceEEEeecccCCCchhHHHHHhhcC
Confidence             389999999999999999998765

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.62  E-value=2.7e-15  Score=155.41  Aligned_cols=162  Identities=16%  Similarity=0.198  Sum_probs=94.4

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCC-CCC-------CCcceeeEEEEEEEeCCeEEEEEEEeCCCch-------h
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQ-------GATIGVDFMIKTVEINNERIKLQIWDTAGQE-------R   68 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~-------~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e-------~   68 (730)
                      +...++|+|+|.+|||||||+|++++.... ..+       .+|++.+.....+..++..+.+.||||||..       .
T Consensus         5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~   84 (274)
T 3t5d_A            5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC   84 (274)
T ss_dssp             --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred             CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence            346799999999999999999998765543 333       5777777777777777777899999999972       2


Q ss_pred             hhhhh-------Hhhhcc-------------ccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHH
Q psy17467         69 FRSIT-------QSYYRS-------------AHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVN  128 (730)
Q Consensus        69 ~~sl~-------~~~~r~-------------ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~  128 (730)
                      +..+.       ..|+..             +|+++++++.+...-...-..++..+.                      
T Consensus        85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~----------------------  142 (274)
T 3t5d_A           85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----------------------  142 (274)
T ss_dssp             THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHT----------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHh----------------------
Confidence            33333       344443             789999998765322221122333331                      


Q ss_pred             HHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccC
Q psy17467        129 EMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDRED  208 (730)
Q Consensus       129 ~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~  208 (730)
                                   .+.|+++|+||+|+.......                                              
T Consensus       143 -------------~~~pvi~V~nK~D~~~~~e~~----------------------------------------------  163 (274)
T 3t5d_A          143 -------------EKVNIIPLIAKADTLTPEECQ----------------------------------------------  163 (274)
T ss_dssp             -------------TTSCEEEEESSGGGSCHHHHH----------------------------------------------
T ss_pred             -------------ccCCEEEEEeccCCCCHHHHH----------------------------------------------
Confidence                         257888899999986432210                                              


Q ss_pred             CCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHHH
Q psy17467        209 REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE  248 (730)
Q Consensus       209 R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~~  248 (730)
                        ...+...+.....++.++++||++++|++++++.|.+.
T Consensus       164 --~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~  201 (274)
T 3t5d_A          164 --QFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR  201 (274)
T ss_dssp             --HHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred             --HHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence              01133455566778899999999999999999888654

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.61  E-value=6.3e-15  Score=161.49  Aligned_cols=164  Identities=18%  Similarity=0.150  Sum_probs=101.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcC---CCCCCCCC--cceeeEEEEEEEe-------------C--C----eEEEEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQG---VFPPGQGA--TIGVDFMIKTVEI-------------N--N----ERIKLQI   60 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~---~f~~~~~p--Tig~d~~~~~i~v-------------d--g----~~v~LqL   60 (730)
                      +..++|+++|..++|||||+++|++.   .+.....+  |+...+....+..             +  +    ....+.|
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            45699999999999999999999954   23333334  4443443333321             1  1    1378999


Q ss_pred             EeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccC
Q psy17467         61 WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTV  140 (730)
Q Consensus        61 wDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~  140 (730)
                      |||||+++|.......+..+|++|+|+|+++........+++..+...                                
T Consensus        86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l--------------------------------  133 (408)
T 1s0u_A           86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL--------------------------------  133 (408)
T ss_dssp             EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT--------------------------------
T ss_pred             EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc--------------------------------
Confidence            999999998877777778889999999999764222222222222110                                


Q ss_pred             CCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHH
Q psy17467        141 DPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFA  220 (730)
Q Consensus       141 ~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~la  220 (730)
                       ...|+++++||+|+.+...                                                .....++.++++
T Consensus       134 -~~~~iivv~NK~Dl~~~~~------------------------------------------------~~~~~~~i~~~l  164 (408)
T 1s0u_A          134 -GIDKIIIVQNKIDLVDEKQ------------------------------------------------AEENYEQIKEFV  164 (408)
T ss_dssp             -TCCCEEEEEECTTSSCTTT------------------------------------------------TTTHHHHHHHHH
T ss_pred             -CCCeEEEEEEccCCCCHHH------------------------------------------------HHHHHHHHHHHH
Confidence             1236788889988853210                                                112235556666


Q ss_pred             Hh---cCCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467        221 KR---HDMYYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       221 k~---lg~~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                      +.   .+++++++||++|.||+++++.|.+.+
T Consensus       165 ~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i  196 (408)
T 1s0u_A          165 KGTIAENAPIIPISAHHEANIDVLLKAIQDFI  196 (408)
T ss_dssp             TTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred             hhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            54   367899999999999999999988654

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.60  E-value=4.4e-15  Score=170.81  Aligned_cols=159  Identities=16%  Similarity=0.211  Sum_probs=111.0

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcC--CCCC-----CCCC------cceeeEE--EEEEEe---CCeEEEEEEEeCCC
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQG--VFPP-----GQGA------TIGVDFM--IKTVEI---NNERIKLQIWDTAG   65 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~--~f~~-----~~~p------Tig~d~~--~~~i~v---dg~~v~LqLwDTpG   65 (730)
                      .+...+|+|+|..++|||||+++|+..  .+..     ...+      +.|.+..  ...+.+   ++..+.++||||||
T Consensus         3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG   82 (600)
T 2ywe_A            3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG   82 (600)
T ss_dssp             GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence            345689999999999999999999752  1110     0001      0111111  112223   45678999999999


Q ss_pred             chhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCc
Q psy17467         66 QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALA  145 (730)
Q Consensus        66 ~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~P  145 (730)
                      +.+|......+++.+|++|+|+|+++..+++....|.....                                   .+.|
T Consensus        83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----------------------------------~~ip  127 (600)
T 2ywe_A           83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-----------------------------------QDLV  127 (600)
T ss_dssp             SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-----------------------------------TTCE
T ss_pred             cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-----------------------------------CCCC
Confidence            99999888899999999999999999998888877765432                                   3567


Q ss_pred             eEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC
Q psy17467        146 TALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM  225 (730)
Q Consensus       146 VVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~  225 (730)
                      +++|+||+|+....                                                    ..+..++++..+++
T Consensus       128 iIvviNKiDl~~a~----------------------------------------------------~~~v~~el~~~lg~  155 (600)
T 2ywe_A          128 IIPVINKIDLPSAD----------------------------------------------------VDRVKKQIEEVLGL  155 (600)
T ss_dssp             EEEEEECTTSTTCC----------------------------------------------------HHHHHHHHHHTSCC
T ss_pred             EEEEEeccCccccC----------------------------------------------------HHHHHHHHHHhhCC
Confidence            78888888885310                                                    11233455555565


Q ss_pred             ---eEEEEecCCCCChHHHHHHHHHHH
Q psy17467        226 ---YYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       226 ---~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                         .++++||++|.||+++|+.+++.+
T Consensus       156 ~~~~vi~vSAktg~GI~~Lle~I~~~l  182 (600)
T 2ywe_A          156 DPEEAILASAKEGIGIEEILEAIVNRI  182 (600)
T ss_dssp             CGGGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred             CcccEEEEEeecCCCchHHHHHHHHhc
Confidence               389999999999999999998766

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.60  E-value=3e-15  Score=146.31  Aligned_cols=155  Identities=15%  Similarity=0.187  Sum_probs=98.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh----------hhhhhHhh
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER----------FRSITQSY   76 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~----------~~sl~~~~   76 (730)
                      ..+|+++|++|||||||++++++..+...+.|+.|.......+.+++   .+.+|||||...          +......+
T Consensus        26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~  102 (210)
T 1pui_A           26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGEY  102 (210)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHHH
Confidence            47899999999999999999998775555556666555444555544   478999999732          23233334


Q ss_pred             h---ccccEEEEEeecCCCCchhh--hHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEecc
Q psy17467         77 Y---RSAHALILVYDISCQPTFDC--LTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASD  151 (730)
Q Consensus        77 ~---r~ADaIILVyDvtd~eSfe~--L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGN  151 (730)
                      +   ..++++++|+|++++.++..  +..|+..                                     .+.|+++++|
T Consensus       103 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~v~n  145 (210)
T 1pui_A          103 LEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-------------------------------------SNIAVLVLLT  145 (210)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------------------------------------TTCCEEEEEE
T ss_pred             HHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-------------------------------------cCCCeEEEEe
Confidence            4   57899999999998766542  2222211                                     3567788889


Q ss_pred             CCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC--CeEEE
Q psy17467        152 KTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD--MYYLE  229 (730)
Q Consensus       152 K~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg--~~fvE  229 (730)
                      |+|+....+.                                                +...+.++.++...+  +.+++
T Consensus       146 K~D~~s~~~~------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~  177 (210)
T 1pui_A          146 KADKLASGAR------------------------------------------------KAQLNMVREAVLAFNGDVQVET  177 (210)
T ss_dssp             CGGGSCHHHH------------------------------------------------HHHHHHHHHHHGGGCSCEEEEE
T ss_pred             cccCCCchhH------------------------------------------------HHHHHHHHHHHHhcCCCCceEE
Confidence            9987643211                                                111244555555554  57899


Q ss_pred             EecCCCCChHHHHHHHHHHH
Q psy17467        230 TSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       230 tSAktG~GVeeLFe~Li~~l  249 (730)
                      |||+++.|++++++.+.+.+
T Consensus       178 ~Sal~~~~~~~l~~~l~~~~  197 (210)
T 1pui_A          178 FSSLKKQGVDKLRQKLDTWF  197 (210)
T ss_dssp             CBTTTTBSHHHHHHHHHHHH
T ss_pred             EeecCCCCHHHHHHHHHHHH
Confidence            99999999999999988765

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.59  E-value=4.8e-16  Score=171.93  Aligned_cols=162  Identities=18%  Similarity=0.209  Sum_probs=108.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcC--CCCCCC-----------------------------CCcceeeEEEEEEEeCCe
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQG--VFPPGQ-----------------------------GATIGVDFMIKTVEINNE   54 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~--~f~~~~-----------------------------~pTig~d~~~~~i~vdg~   54 (730)
                      ..+||+++|.+|+|||||+++|++.  .+....                             .+.++.+.....+..+  
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~--   82 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK--   82 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS--
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC--
Confidence            4699999999999999999999864  332110                             1122222322333333  


Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhh
Q psy17467         55 RIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAA  134 (730)
Q Consensus        55 ~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~  134 (730)
                      .+.+.||||||+++|......+++.+|++|+|+|+++ .+|+.+..|..+...+..                   ++...
T Consensus        83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~-------------------~~~~~  142 (435)
T 1jny_A           83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHII-------------------LAKTM  142 (435)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHH-------------------HHHHT
T ss_pred             CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHH-------------------HHHHc
Confidence            4779999999999999888899999999999999999 788877766655544320                   01111


Q ss_pred             cccccCCCCCceEEeccCCCcchh---hHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCC
Q psy17467        135 GLLCTVDPALATALASDKTDLDED---EHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREI  211 (730)
Q Consensus       135 g~~~~~~~~~PVVLVGNK~DL~~~---e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~V  211 (730)
                      +       -.|+++++||+|+.+.   +..                                               ...
T Consensus       143 ~-------~~~iivviNK~Dl~~~~~~~~~-----------------------------------------------~~~  168 (435)
T 1jny_A          143 G-------LDQLIVAVNKMDLTEPPYDEKR-----------------------------------------------YKE  168 (435)
T ss_dssp             T-------CTTCEEEEECGGGSSSTTCHHH-----------------------------------------------HHH
T ss_pred             C-------CCeEEEEEEcccCCCccccHHH-----------------------------------------------HHH
Confidence            1       1357788888888641   000                                               011


Q ss_pred             ChHHHHHHHHhcC-----CeEEEEecCCCCChHHHHH
Q psy17467        212 PTEVGEDFAKRHD-----MYYLETSAKASDNVEKLFM  243 (730)
Q Consensus       212 s~ee~~~lak~lg-----~~fvEtSAktG~GVeeLFe  243 (730)
                      ..++.+++++.++     ++++++||++|.||.++++
T Consensus       169 ~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          169 IVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             HHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             HHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            2355677777766     6899999999999987654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.59  E-value=6.7e-16  Score=171.57  Aligned_cols=114  Identities=19%  Similarity=0.143  Sum_probs=77.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCC--------chhhhhhhHhhhc
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG--------QERFRSITQSYYR   78 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG--------~e~~~sl~~~~~r   78 (730)
                      ..+|+|+|++|||||||+|+|++..+... .++.|.+.......+......+.+|||||        ++.+......+++
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~  101 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD  101 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence            46899999999999999999998766422 23444445444455544446899999999        7777788889999


Q ss_pred             cccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467         79 SAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD  156 (730)
Q Consensus        79 ~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~  156 (730)
                      .||++|+|+|.++..+  ....|+.++.+                                 ..+.|+++|+||+|+.
T Consensus       102 ~ad~il~VvD~~~~~~--~~d~~l~~~l~---------------------------------~~~~pvilV~NK~D~~  144 (456)
T 4dcu_A          102 EADVIIFMVNGREGVT--AADEEVAKILY---------------------------------RTKKPVVLAVNKLDNT  144 (456)
T ss_dssp             HCSEEEEEEESSSCSC--HHHHHHHHHHT---------------------------------TCCSCEEEEEECC---
T ss_pred             hCCEEEEEEeCCCCCC--hHHHHHHHHHH---------------------------------HcCCCEEEEEECccch
Confidence            9999999999876433  33344444322                                 1467888889999985

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.59  E-value=1.2e-14  Score=161.26  Aligned_cols=88  Identities=17%  Similarity=0.124  Sum_probs=67.9

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCC-------------------------------CCCCCCcceeeEEEEEEEeC
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVF-------------------------------PPGQGATIGVDFMIKTVEIN   52 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f-------------------------------~~~~~pTig~d~~~~~i~vd   52 (730)
                      .+..++|+++|.+|+|||||+++|+...-                               .....+.++.+.....+..+
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~   93 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE   93 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence            45669999999999999999999964311                               11112344555555555555


Q ss_pred             CeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCC
Q psy17467         53 NERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQP   93 (730)
Q Consensus        53 g~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~e   93 (730)
                      +  ..+.||||||+++|......+++.||++|||+|+++..
T Consensus        94 ~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~  132 (439)
T 3j2k_7           94 K--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGE  132 (439)
T ss_pred             C--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCc
Confidence            5  68999999999999988888999999999999999864

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.59  E-value=5.6e-15  Score=155.89  Aligned_cols=155  Identities=15%  Similarity=0.113  Sum_probs=106.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCch-h--------hhhhhHhh
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPP-GQGATIGVDFMIKTVEINNERIKLQIWDTAGQE-R--------FRSITQSY   76 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~-~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e-~--------~~sl~~~~   76 (730)
                      ..+|+|+|++|||||||+|++++..+.. ...+..+.......+..++  ..+.+|||||.. .        +......+
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~   85 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASSS   85 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence            3579999999999999999999887632 2333333333334445555  679999999986 2        22333566


Q ss_pred             hccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467         77 YRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD  156 (730)
Q Consensus        77 ~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~  156 (730)
                      ++.+|++++|+|+++   +.....|+-+...                                 ..+.|+++++||+|+.
T Consensus        86 l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~---------------------------------~~~~P~ilvlNK~D~~  129 (301)
T 1ega_A           86 IGDVELVIFVVEGTR---WTPDDEMVLNKLR---------------------------------EGKAPVILAVNKVDNV  129 (301)
T ss_dssp             CCCEEEEEEEEETTC---CCHHHHHHHHHHH---------------------------------SSSSCEEEEEESTTTC
T ss_pred             HhcCCEEEEEEeCCC---CCHHHHHHHHHHH---------------------------------hcCCCEEEEEECcccC
Confidence            889999999999976   4433334332211                                 1467888888988886


Q ss_pred             hhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCC
Q psy17467        157 EDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKAS  235 (730)
Q Consensus       157 ~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG  235 (730)
                      ...                                                  ....+...++++.+++ .++++||++|
T Consensus       130 ~~~--------------------------------------------------~~~~~~l~~l~~~~~~~~~i~iSA~~g  159 (301)
T 1ega_A          130 QEK--------------------------------------------------ADLLPHLQFLASQMNFLDIVPISAETG  159 (301)
T ss_dssp             CCH--------------------------------------------------HHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred             ccH--------------------------------------------------HHHHHHHHHHHHhcCcCceEEEECCCC
Confidence            311                                                  0112345556666776 7999999999


Q ss_pred             CChHHHHHHHHHHH
Q psy17467        236 DNVEKLFMQIAAEL  249 (730)
Q Consensus       236 ~GVeeLFe~Li~~l  249 (730)
                      .|++++++.+.+.+
T Consensus       160 ~~v~~l~~~i~~~l  173 (301)
T 1ega_A          160 LNVDTIAAIVRKHL  173 (301)
T ss_dssp             TTHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHhC
Confidence            99999999987654

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.59  E-value=9.2e-16  Score=158.71  Aligned_cols=119  Identities=18%  Similarity=0.246  Sum_probs=77.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCC------CCCCcce--------------------eeEE-------------
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPP------GQGATIG--------------------VDFM-------------   45 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~------~~~pTig--------------------~d~~-------------   45 (730)
                      ....+|+|+|++|||||||+|+|++..+.+      +..|+..                    .++.             
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            356799999999999999999999988742      2223310                    0000             


Q ss_pred             ----------EEEEEeC-CeEEEEEEEeCCCch-------------hhhhhhHhhhccccEEE-EEeecCCCCchhhhHH
Q psy17467         46 ----------IKTVEIN-NERIKLQIWDTAGQE-------------RFRSITQSYYRSAHALI-LVYDISCQPTFDCLTD  100 (730)
Q Consensus        46 ----------~~~i~vd-g~~v~LqLwDTpG~e-------------~~~sl~~~~~r~ADaII-LVyDvtd~eSfe~L~~  100 (730)
                                ...+.+. .....+.||||||..             .+..+...|++.++++| +|+|+++..+.++...
T Consensus       104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~  183 (299)
T 2aka_B          104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  183 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred             cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence                      0000000 012579999999963             34556678888888777 6999988655554434


Q ss_pred             HHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467        101 WLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE  157 (730)
Q Consensus       101 wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~  157 (730)
                      |+..+.                                  ..+.|+++|+||+|+.+
T Consensus       184 ~~~~~~----------------------------------~~~~~~i~V~NK~Dl~~  206 (299)
T 2aka_B          184 IAKEVD----------------------------------PQGQRTIGVITKLDLMD  206 (299)
T ss_dssp             HHHHHC----------------------------------TTCSSEEEEEECGGGSC
T ss_pred             HHHHhC----------------------------------CCCCeEEEEEEccccCC
Confidence            444431                                  13578888999999863

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.59  E-value=2.1e-14  Score=157.37  Aligned_cols=165  Identities=17%  Similarity=0.140  Sum_probs=108.6

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCC--cceeeEEEEEEEe-------------C--C----eEEEEE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGV---FPPGQGA--TIGVDFMIKTVEI-------------N--N----ERIKLQ   59 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~---f~~~~~p--Tig~d~~~~~i~v-------------d--g----~~v~Lq   59 (730)
                      .+..++|+++|..++|||||+++|++..   +.....+  |+...+....+..             +  +    ....+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            4567999999999999999999999542   2333334  4433343333321             1  1    137899


Q ss_pred             EEeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhccccc
Q psy17467         60 IWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCT  139 (730)
Q Consensus        60 LwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~  139 (730)
                      ||||||+++|.......+..+|++|+|+|+++........+.+..+...                               
T Consensus        87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-------------------------------  135 (410)
T 1kk1_A           87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-------------------------------  135 (410)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-------------------------------
T ss_pred             EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-------------------------------
Confidence            9999999998877777788899999999999764222222222222111                               


Q ss_pred             CCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHH
Q psy17467        140 VDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDF  219 (730)
Q Consensus       140 ~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~l  219 (730)
                        ...|+++|+||+|+.+.....                                                ...++.+++
T Consensus       136 --~~~~iivviNK~Dl~~~~~~~------------------------------------------------~~~~~i~~~  165 (410)
T 1kk1_A          136 --GQKNIIIAQNKIELVDKEKAL------------------------------------------------ENYRQIKEF  165 (410)
T ss_dssp             --TCCCEEEEEECGGGSCHHHHH------------------------------------------------HHHHHHHHH
T ss_pred             --CCCcEEEEEECccCCCHHHHH------------------------------------------------HHHHHHHHH
Confidence              124678889999986532110                                                012334444


Q ss_pred             HHh---cCCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467        220 AKR---HDMYYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       220 ak~---lg~~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                      ++.   .+++++++||++|.||+++++.|.+.+
T Consensus       166 l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~  198 (410)
T 1kk1_A          166 IEGTVAENAPIIPISALHGANIDVLVKAIEDFI  198 (410)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            443   357899999999999999999987654

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.58  E-value=4.3e-15  Score=166.40  Aligned_cols=91  Identities=19%  Similarity=0.205  Sum_probs=63.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCC--C-----------------------------CCCCCcceeeEEEEEEEeCC
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVF--P-----------------------------PGQGATIGVDFMIKTVEINN   53 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f--~-----------------------------~~~~pTig~d~~~~~i~vdg   53 (730)
                      +..+||+++|.+|+|||||+++|++...  .                             ....+.++.+.....  ++.
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~--~~~  108 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSH--FST  108 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEE--EEC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEE--Eec
Confidence            4569999999999999999999975411  0                             011112222222233  333


Q ss_pred             eEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhh
Q psy17467         54 ERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDC   97 (730)
Q Consensus        54 ~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~   97 (730)
                      ..+.+.||||||+++|......+++.+|++|+|+|+++..++..
T Consensus       109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~  152 (483)
T 3p26_A          109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESG  152 (483)
T ss_dssp             SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------
T ss_pred             CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccc
Confidence            44789999999999999999999999999999999999766544

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.58  E-value=1.4e-16  Score=181.18  Aligned_cols=158  Identities=18%  Similarity=0.179  Sum_probs=112.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      ..+|+++|.+|||||||+++|++..+...+.++++.++....+.+++ ...+.||||||++.|..++..+++.+|++|||
T Consensus         4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV   82 (537)
T 3izy_P            4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVILV   82 (537)
T ss_dssp             CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence            46899999999999999999998776655666666555444444422 23689999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      +|+++....+....| ..+   .                               ..+.|+++|+||+|+.+...      
T Consensus        83 VDa~dg~~~qt~e~l-~~~---~-------------------------------~~~vPiIVViNKiDl~~~~~------  121 (537)
T 3izy_P           83 VAADDGVMKQTVESI-QHA---K-------------------------------DAHVPIVLAINKCDKAEADP------  121 (537)
T ss_dssp             CBSSSCCCHHHHHHH-HHH---H-------------------------------TTTCCEEECCBSGGGTTTSC------
T ss_pred             EECCCCccHHHHHHH-HHH---H-------------------------------HcCCcEEEEEecccccccch------
Confidence            999997665544322 111   1                               14568899999999853110      


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHH---HHhc--CCeEEEEecCCCCChHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDF---AKRH--DMYYLETSAKASDNVEKL  241 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~l---ak~l--g~~fvEtSAktG~GVeeL  241 (730)
                                                                ..+. ++...+   +..+  .+++++|||++|.||+++
T Consensus       122 ------------------------------------------~~v~-~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eL  158 (537)
T 3izy_P          122 ------------------------------------------EKVK-KELLAYDVVCEDYGGDVQAVHVSALTGENMMAL  158 (537)
T ss_dssp             ------------------------------------------CSSS-SHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHH
T ss_pred             ------------------------------------------HHHH-HHHHhhhhhHHhcCCCceEEEEECCCCCCchhH
Confidence                                                      0000 111111   1122  357999999999999999


Q ss_pred             HHHHHHHH
Q psy17467        242 FMQIAAEL  249 (730)
Q Consensus       242 Fe~Li~~l  249 (730)
                      |+.+...+
T Consensus       159 le~I~~l~  166 (537)
T 3izy_P          159 AEATIALA  166 (537)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99998765

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.57  E-value=3.7e-15  Score=163.01  Aligned_cols=101  Identities=17%  Similarity=0.108  Sum_probs=70.8

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcC--------CCCCC---C----CCcceeeEEEEEEEeCCeEEEEEEEeCCCchh
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQG--------VFPPG---Q----GATIGVDFMIKTVEINNERIKLQIWDTAGQER   68 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~--------~f~~~---~----~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~   68 (730)
                      .+..++|+++|.+|+|||||+++|++.        .+...   .    ..+.|.+.....+.++.....+.||||||+++
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            345699999999999999999999873        22110   0    00222222233344444447789999999999


Q ss_pred             hhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHH
Q psy17467         69 FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI  105 (730)
Q Consensus        69 ~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI  105 (730)
                      |......+++.+|++|+|+|+++....+ ..+|+..+
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~  123 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLA  123 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHH
Confidence            9888888999999999999999876443 34555444

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.55  E-value=6.3e-15  Score=161.06  Aligned_cols=93  Identities=18%  Similarity=0.124  Sum_probs=66.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcC-------CCCCC-------CCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQG-------VFPPG-------QGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS   71 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~-------~f~~~-------~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s   71 (730)
                      ..+||+++|.+++|||||+++|++.       .+...       .....|.+.....+.++.....+.||||||+++|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            3589999999999999999999863       11110       000122223233334444447799999999999988


Q ss_pred             hhHhhhccccEEEEEeecCCCCchhhh
Q psy17467         72 ITQSYYRSAHALILVYDISCQPTFDCL   98 (730)
Q Consensus        72 l~~~~~r~ADaIILVyDvtd~eSfe~L   98 (730)
                      ....+++.+|++|+|+|+++....+..
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~  108 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTR  108 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHH
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHH
Confidence            888889999999999999987654443

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.55  E-value=1.1e-14  Score=160.93  Aligned_cols=157  Identities=21%  Similarity=0.194  Sum_probs=104.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCC--CC----------CCCc---------------------ceeeEEEEEEEe
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFP--PG----------QGAT---------------------IGVDFMIKTVEI   51 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~--~~----------~~pT---------------------ig~d~~~~~i~v   51 (730)
                      +..+||+++|.+++|||||+++|++....  ..          ..++                     ++.+.....+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            45689999999999999999999865311  00          0011                     111111222333


Q ss_pred             CCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHH
Q psy17467         52 NNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMA  131 (730)
Q Consensus        52 dg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~  131 (730)
                      +  ...+.||||||+++|......++..+|++|+|+|+++....+ ..+|+..+...                       
T Consensus       102 ~--~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~-----------------------  155 (434)
T 1zun_B          102 A--KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL-----------------------  155 (434)
T ss_dssp             S--SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT-----------------------
T ss_pred             C--CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc-----------------------
Confidence            3  367999999999999888888899999999999999875433 33444333211                       


Q ss_pred             hhhcccccCCCCCceEEeccCCCcchh-hHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCC
Q psy17467        132 SAAGLLCTVDPALATALASDKTDLDED-EHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDRE  210 (730)
Q Consensus       132 ~~~g~~~~~~~~~PVVLVGNK~DL~~~-e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~  210 (730)
                                ...|+++|+||+|+.+. +...                                               .
T Consensus       156 ----------~~~~iIvviNK~Dl~~~~~~~~-----------------------------------------------~  178 (434)
T 1zun_B          156 ----------GIKHIVVAINKMDLNGFDERVF-----------------------------------------------E  178 (434)
T ss_dssp             ----------TCCEEEEEEECTTTTTSCHHHH-----------------------------------------------H
T ss_pred             ----------CCCeEEEEEEcCcCCcccHHHH-----------------------------------------------H
Confidence                      11257888899998641 1100                                               0


Q ss_pred             CChHHHHHHHHhcC-----CeEEEEecCCCCChHHHHHH
Q psy17467        211 IPTEVGEDFAKRHD-----MYYLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       211 Vs~ee~~~lak~lg-----~~fvEtSAktG~GVeeLFe~  244 (730)
                      ...++..++++.++     ++++++||++|.||+++|+.
T Consensus       179 ~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~  217 (434)
T 1zun_B          179 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER  217 (434)
T ss_dssp             HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred             HHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence            01245667777777     68999999999999987653

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.54  E-value=2.3e-14  Score=155.80  Aligned_cols=253  Identities=13%  Similarity=0.035  Sum_probs=149.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe---------------EEEEEEEeCCCchhhh--
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE---------------RIKLQIWDTAGQERFR--   70 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~---------------~v~LqLwDTpG~e~~~--   70 (730)
                      ++|+++|.||||||||+|++++..+.....|..+.+.....+.+++.               ...+++|||||..++.  
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            78999999999999999999998765444454333343345555542               2579999999987653  


Q ss_pred             --hhh---HhhhccccEEEEEeecCCC----------CchhhhHHHHHHHHHHhcc--cceEEEEe--cc-Cch--hhHH
Q psy17467         71 --SIT---QSYYRSAHALILVYDISCQ----------PTFDCLTDWLREIEEYASF--KVLRVLVG--GT-SGL--KIVN  128 (730)
Q Consensus        71 --sl~---~~~~r~ADaIILVyDvtd~----------eSfe~L~~wleeI~~~~~~--~~piVLVg--~k-~dl--~~~~  128 (730)
                        .+.   ..+++.+|++++|+|+++.          ..++++..+..++.-....  ..+..-+.  .+ ++.  ....
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~  162 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL  162 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence              232   2357899999999999873          4556665555554211000  00000000  00 000  0000


Q ss_pred             HHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccC
Q psy17467        129 EMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDRED  208 (730)
Q Consensus       129 ~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~  208 (730)
                      +.+....-  ....+.|+-    ..++.                      ..+ ......+.-....|.++|+|++|..-
T Consensus       163 ~~l~~~~~--~L~~~~~~~----~~~~~----------------------~~e-~~~l~~~~llt~KPvi~v~N~~e~~~  213 (363)
T 1jal_A          163 SVMEKILP--VLENAGMIR----SVGLD----------------------KEE-LQAIKSYNFLTLKPTMYIANVNEDGF  213 (363)
T ss_dssp             HHHHHHHH--HHHTTCCGG----GSCCC----------------------HHH-HHHHGGGCCSTTSCEEEEEECCTTCS
T ss_pred             HHHHHHHH--HHhcCCCcc----ccCCC----------------------HHH-HHHHHHhhcccCCcEEEEEecccccc
Confidence            00000000  000011110    00111                      111 12223344456789999999998642


Q ss_pred             -CCCChHHHHHHHHhcCCeEEEEecCC----------------------CCChHHHHHHHHHHHHHHHHHHhhhcccccc
Q psy17467        209 -REIPTEVGEDFAKRHDMYYLETSAKA----------------------SDNVEKLFMQIAAELMEKLAEKLTIMHDRGV  265 (730)
Q Consensus       209 -R~Vs~ee~~~lak~lg~~fvEtSAkt----------------------G~GVeeLFe~Li~~l~e~~~~~~~~~~~~~~  265 (730)
                       ...-.+..++++...++.++++||+.                      +.|++.+.+.+++.+                
T Consensus       214 ~~n~~~~~v~~~~~~~~~~~i~~sA~~E~el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L----------------  277 (363)
T 1jal_A          214 ENNPYLDRVREIAAKEGAVVVPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALL----------------  277 (363)
T ss_dssp             SSCHHHHHHHHHHHHTTCEEEEECHHHHHHGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHT----------------
T ss_pred             cccHHHHHHHHHHHHcCCCEEEechHHHHHHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHh----------------
Confidence             22334667778888899999999764                      367788887777777                


Q ss_pred             ccchhhhcccccCCCCCCCCCccccchhhHHHHHH-hhcCCCCcee
Q psy17467        266 GMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQI-VKKFPNIDIK  310 (730)
Q Consensus       266 ~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~-~k~~p~~~~~  310 (730)
                       .+++.|+..    ..-.+|-++++|.+..+.|-. |.++...|+.
T Consensus       278 -~li~~ft~g----~~e~raw~i~~G~ta~~aAg~IH~D~~~gFi~  318 (363)
T 1jal_A          278 -NLQTYFTAG----VKEVRAWTVSVGATAPKAAAVIHTDFEKGFIR  318 (363)
T ss_dssp             -TEEEEEEEC----SSEEEEEEEETTCBHHHHHHTTCTTHHHHCCE
T ss_pred             -CCEEEECCC----CCCcceeEecCCCcHHHHHHhhHHHHHhccEE
Confidence             788888844    334578889999999999887 9999988874

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.53  E-value=1.2e-14  Score=165.16  Aligned_cols=115  Identities=14%  Similarity=0.080  Sum_probs=83.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCC-----------------CCCC-----CCcceeeEEEEEEEeCCeEEEEEEEeC
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVF-----------------PPGQ-----GATIGVDFMIKTVEINNERIKLQIWDT   63 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f-----------------~~~~-----~pTig~d~~~~~i~vdg~~v~LqLwDT   63 (730)
                      ...+|+|+|.+|||||||+++|+....                 ...+     .+.++.......+.+++  +.+.||||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDT   89 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDT   89 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEEC
Confidence            457999999999999999999962100                 0000     01112222233455555  78999999


Q ss_pred             CCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCC
Q psy17467         64 AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPA  143 (730)
Q Consensus        64 pG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~  143 (730)
                      ||+.+|......+++.+|++|+|+|+++..+.+...-|. .+.                                  ..+
T Consensus        90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~----------------------------------~~~  134 (528)
T 3tr5_A           90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCR----------------------------------LRH  134 (528)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHH----------------------------------TTT
T ss_pred             CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHH----------------------------------HcC
Confidence            999999999999999999999999999988887765453 221                                  135


Q ss_pred             CceEEeccCCCcch
Q psy17467        144 LATALASDKTDLDE  157 (730)
Q Consensus       144 ~PVVLVGNK~DL~~  157 (730)
                      .|+++|+||+|+..
T Consensus       135 iPiivviNK~Dl~~  148 (528)
T 3tr5_A          135 TPIMTFINKMDRDT  148 (528)
T ss_dssp             CCEEEEEECTTSCC
T ss_pred             CCEEEEEeCCCCcc
Confidence            78888999999863

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.52  E-value=8.5e-15  Score=154.75  Aligned_cols=162  Identities=19%  Similarity=0.258  Sum_probs=84.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcC-CCCCCC--------CCcceeeEEEEEEEeCCeEEEEEEEeCCCc-------hh
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQG-VFPPGQ--------GATIGVDFMIKTVEINNERIKLQIWDTAGQ-------ER   68 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~-~f~~~~--------~pTig~d~~~~~i~vdg~~v~LqLwDTpG~-------e~   68 (730)
                      +..++|+|+|++|||||||++++.+. .++..+        .++.+.......++.++....+.+|||+|.       +.
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            45689999999999999999998875 444332        122222222222333455678999999998       44


Q ss_pred             hhhhhH-------hhhccccE-----------EEEEeecCC-CCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHH
Q psy17467         69 FRSITQ-------SYYRSAHA-----------LILVYDISC-QPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNE  129 (730)
Q Consensus        69 ~~sl~~-------~~~r~ADa-----------IILVyDvtd-~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~  129 (730)
                      +..+..       .+++.+++           .+++|+.+. ..+++.+..  +.+...                     
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~--~~l~~l---------------------  152 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV--AFMKAI---------------------  152 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH--HHHHHH---------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH--HHHHHH---------------------
Confidence            444444       44443322           224444432 234655431  222211                     


Q ss_pred             HHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCC
Q psy17467        130 MASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDR  209 (730)
Q Consensus       130 i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R  209 (730)
                                 ..+.++++|+||.|+.+..+                                                .
T Consensus       153 -----------~~~~~iilV~~K~Dl~~~~e------------------------------------------------~  173 (301)
T 2qnr_A          153 -----------HNKVNIVPVIAKADTLTLKE------------------------------------------------R  173 (301)
T ss_dssp             -----------TTTSCEEEEECCGGGSCHHH------------------------------------------------H
T ss_pred             -----------HhcCCEEEEEEeCCCCCHHH------------------------------------------------H
Confidence                       13457788888888864221                                                0


Q ss_pred             CCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467        210 EIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       210 ~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                      .+..++++++++.+++.|+++||++| |++++|..+.+.+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i  212 (301)
T 2qnr_A          174 ERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLL  212 (301)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHh
Confidence            12346788899999999999999999 9999999998877

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.52  E-value=5.4e-15  Score=156.01  Aligned_cols=133  Identities=18%  Similarity=0.172  Sum_probs=106.5

Q ss_pred             HHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCC-chhhhH
Q psy17467         22 CLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQP-TFDCLT   99 (730)
Q Consensus        22 SLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~e-Sfe~L~   99 (730)
                      +|+.+|+.+.|. ..+.||+| +.....+..++   .+++||+  ++++..+++.+++++|++|+|||++++. +|+.+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiG-d~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVG-DRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTT-CEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCc-cEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            788999999998 88899999 44444433333   6899999  8899999999999999999999999997 788889


Q ss_pred             HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhccccccc
Q psy17467        100 DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLAR  179 (730)
Q Consensus       100 ~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~  179 (730)
                      .|+..+..                                  .+.|++||+||+||.+..                    
T Consensus       106 ~~l~~~~~----------------------------------~~~piilv~NK~DL~~~~--------------------  131 (301)
T 1u0l_A          106 KFLVLAEK----------------------------------NELETVMVINKMDLYDED--------------------  131 (301)
T ss_dssp             HHHHHHHH----------------------------------TTCEEEEEECCGGGCCHH--------------------
T ss_pred             HHHHHHHH----------------------------------CCCCEEEEEeHHHcCCch--------------------
Confidence            99987643                                  356778888888885321                    


Q ss_pred             chhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC--CeEEEEecCCCCChHHHHHHHH
Q psy17467        180 NEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD--MYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg--~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                                    .+  ++++++++.++  +.|++|||++|.||+++|..+.
T Consensus       132 ------------------------------~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          132 ------------------------------DL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             ------------------------------HH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             ------------------------------hH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence                                          11  34566676666  8999999999999999998764

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.51  E-value=6.8e-14  Score=152.16  Aligned_cols=149  Identities=11%  Similarity=0.065  Sum_probs=103.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEee
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYD   88 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyD   88 (730)
                      +|+++|.+++|||||+++|+      .  ..++.+.....+..++  ..+.||||||+++|.......++.+|++|+|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~------~--~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG------K--KGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS------E--EEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH------h--CCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            89999999999999999998      1  1222223333344444  569999999999998777778899999999999


Q ss_pred             cCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCce-EEecc-CCCcchhhHHHHHHH
Q psy17467         89 ISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALAT-ALASD-KTDLDEDEHVLACLL  166 (730)
Q Consensus        89 vtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PV-VLVGN-K~DL~~~e~~~~~l~  166 (730)
                       + ...+....+|+..+..                                  .+.|. +++.| |+|+ +.+...    
T Consensus        93 -~-~g~~~qt~e~~~~~~~----------------------------------~~i~~~ivvvNNK~Dl-~~~~~~----  131 (370)
T 2elf_A           93 -P-QGLDAHTGECIIALDL----------------------------------LGFKHGIIALTRSDST-HMHAID----  131 (370)
T ss_dssp             -T-TCCCHHHHHHHHHHHH----------------------------------TTCCEEEEEECCGGGS-CHHHHH----
T ss_pred             -C-CCCcHHHHHHHHHHHH----------------------------------cCCCeEEEEEEeccCC-CHHHHH----
Confidence             4 4445555666555432                                  13344 66667 8888 322100    


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc---CCeEEE--EecCC---CCCh
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH---DMYYLE--TSAKA---SDNV  238 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l---g~~fvE--tSAkt---G~GV  238 (730)
                                                                  ...++.+++++..   .+++++  +||++   |.||
T Consensus       132 --------------------------------------------~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi  167 (370)
T 2elf_A          132 --------------------------------------------ELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGV  167 (370)
T ss_dssp             --------------------------------------------HHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTH
T ss_pred             --------------------------------------------HHHHHHHHHHHhcCCCceEEEecccccccCcCCCCH
Confidence                                                        0013444555444   368999  99999   9999


Q ss_pred             HHHHHHHHHHHHHH
Q psy17467        239 EKLFMQIAAELMEK  252 (730)
Q Consensus       239 eeLFe~Li~~l~e~  252 (730)
                      +++++.|.+.+...
T Consensus       168 ~~L~~~l~~~~~~~  181 (370)
T 2elf_A          168 DELKARINEVAEKI  181 (370)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccc
Confidence            99999999887544

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.51  E-value=6e-15  Score=164.49  Aligned_cols=90  Identities=18%  Similarity=0.204  Sum_probs=65.7

Q ss_pred             CCCCcceeEEEEEcCCCCCHHHHHHHHHcC--CCCCC-----------------------C------CCcceeeEEEEEE
Q psy17467          1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQG--VFPPG-----------------------Q------GATIGVDFMIKTV   49 (730)
Q Consensus         1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~--~f~~~-----------------------~------~pTig~d~~~~~i   49 (730)
                      |...+..++|+++|.+|+|||||+++|++.  .+...                       .      ...++.+.....+
T Consensus         1 M~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~   80 (458)
T 1f60_A            1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKF   80 (458)
T ss_dssp             -CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEE
T ss_pred             CCCCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEE
Confidence            565567799999999999999999999863  22110                       0      0112222222333


Q ss_pred             EeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCC
Q psy17467         50 EINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQ   92 (730)
Q Consensus        50 ~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~   92 (730)
                      ..++  ..+.||||||+++|......++..+|++|+|+|+++.
T Consensus        81 ~~~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g  121 (458)
T 1f60_A           81 ETPK--YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG  121 (458)
T ss_dssp             ECSS--EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH
T ss_pred             ecCC--ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcC
Confidence            3344  7899999999999998888899999999999999875

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.51  E-value=9e-15  Score=160.58  Aligned_cols=264  Identities=18%  Similarity=0.100  Sum_probs=134.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEE---------------------eCC-eEEEEEEEeCCC
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVE---------------------INN-ERIKLQIWDTAG   65 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~---------------------vdg-~~v~LqLwDTpG   65 (730)
                      +||+|+|.||||||||+|++++........|..+.+.....+.                     +++ ..+.++||||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            5899999999999999999998874444444333333222211                     233 257899999999


Q ss_pred             chhh----hhhhH---hhhccccEEEEEeecCCC-----------CchhhhHHHHHHHHHHh----cccceE--------
Q psy17467         66 QERF----RSITQ---SYYRSAHALILVYDISCQ-----------PTFDCLTDWLREIEEYA----SFKVLR--------  115 (730)
Q Consensus        66 ~e~~----~sl~~---~~~r~ADaIILVyDvtd~-----------eSfe~L~~wleeI~~~~----~~~~pi--------  115 (730)
                      ..+.    ..+..   .+++++|++++|+|+++.           ..++++..|..++....    ....+.        
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~~~~  160 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQ  160 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTTSS
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhc
Confidence            8542    22333   347899999999999886           55666655555543220    000000        


Q ss_pred             ----------EEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhh
Q psy17467        116 ----------VLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFY  185 (730)
Q Consensus       116 ----------VLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~  185 (730)
                                .+-|-..+.+.+.+++..++....         . ..++-.+. ..+.                      
T Consensus       161 ~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~---------~-~~~~~~e~-~~l~----------------------  207 (397)
T 1wxq_A          161 KIKLESAIAEHLSGIGVNENDVWEAMHKLNLPED---------P-TKWSQDDL-LAFA----------------------  207 (397)
T ss_dssp             CCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSC---------G-GGCCHHHH-HHHH----------------------
T ss_pred             CccHHHHHHHHhcccCCCHHHHHHHHHHhccCCc---------c-ccCCHHHH-HHHH----------------------
Confidence                      000001234455666666665321         0 11221110 0000                      


Q ss_pred             hhcccCCcCCccccccccccccCCCCChHHHHHHHHh---cCCeEEEEecCCCCChHHHHH-HH------------HHHH
Q psy17467        186 LASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR---HDMYYLETSAKASDNVEKLFM-QI------------AAEL  249 (730)
Q Consensus       186 ~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~---lg~~fvEtSAktG~GVeeLFe-~L------------i~~l  249 (730)
                        ........|.++|+||+|+.    ..+...++.+.   .++.++.+||+.+.|+.++++ .+            ...+
T Consensus       208 --~~~~~~~kP~i~v~NK~D~~----~~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~~~l  281 (397)
T 1wxq_A          208 --SEIRRVNKPMVIAANKADAA----SDEQIKRLVREEEKRGYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDM  281 (397)
T ss_dssp             --HHHHHHHSCEEEEEECGGGS----CHHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCSSSCCCCSCC-----------
T ss_pred             --HhhhccCCCEEEEEeCcccc----chHHHHHHHHHHhhcCCcEEEEeccchhhHHHHHhhhhhhhcCCCccccccccC
Confidence              00011236888889999875    22333444333   378899999999999987644 00            0000


Q ss_pred             H-------HHHHHHhh-hccc---------c--ccccchhhhccc-------ccCCCCCCCCCccccchhhHHHHHH-hh
Q psy17467        250 M-------EKLAEKLT-IMHD---------R--GVGMLTRIYNIK-------KACGDAKSKPSFLSDKSLESCIKQI-VK  302 (730)
Q Consensus       250 ~-------e~~~~~~~-~~~~---------~--~~~~l~riy~~~-------~~~~~~~s~P~~l~~~~~~~~~~~~-~k  302 (730)
                      -       +..++.-. ....         .  ..-.++++|+..       |.++ ...++-.++++++..++|.. |.
T Consensus       282 ~~~~~~~~e~ire~~l~~~g~~g~~~~i~~~~~~~L~li~vft~~~~~~~~~~~g~-~~~~~~~l~~G~t~~d~a~~iH~  360 (397)
T 1wxq_A          282 SEKQKRALMVIKEKVLDRFGSTGVQEVINRVVFDLLKLIPVYPVHDENKLTDQFGN-VLPHVFLMKKGSTPRDLAFKVHT  360 (397)
T ss_dssp             ------CTTHHHHHHTSSSSSCSHHHHHHHHHHTTSCEEEEEEESCC-----CCSC-SSCCCEEEETTCCHHHHHHHHCH
T ss_pred             CHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHhCCeEEEeecccccccCCcCc-ccceeEEeCCCCCHHHHHHHHhH
Confidence            0       00010000 0000         0  122455567632       2221 23368889999999999887 99


Q ss_pred             cCCCCceee
Q psy17467        303 KFPNIDIKS  311 (730)
Q Consensus       303 ~~p~~~~~~  311 (730)
                      ++...|+.-
T Consensus       361 d~~~~f~~a  369 (397)
T 1wxq_A          361 DLGKGFLYA  369 (397)
T ss_dssp             HHHHTEEEE
T ss_pred             HHHhhhhhh
Confidence            999998865

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.51  E-value=1.5e-15  Score=171.39  Aligned_cols=87  Identities=21%  Similarity=0.226  Sum_probs=66.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      +..+|+++|.+++|||||+++|.+..+.....++++.+.....+.+++  ..+.||||||++.|...+...+..+|++||
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            346899999999999999999997655444333333333233344455  468999999999999998889999999999


Q ss_pred             EeecCCCCc
Q psy17467         86 VYDISCQPT   94 (730)
Q Consensus        86 VyDvtd~eS   94 (730)
                      |+|+++...
T Consensus        81 VVda~~g~~   89 (501)
T 1zo1_I           81 VVAADDGVM   89 (501)
T ss_dssp             EEETTTBSC
T ss_pred             EeecccCcc
Confidence            999988543

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.50  E-value=1.8e-14  Score=160.98  Aligned_cols=99  Identities=15%  Similarity=0.148  Sum_probs=58.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHc--CCCCC------------------------CC-----CCcceeeEEEEEEEeCC
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQ--GVFPP------------------------GQ-----GATIGVDFMIKTVEINN   53 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~--~~f~~------------------------~~-----~pTig~d~~~~~i~vdg   53 (730)
                      +..++|+++|..++|||||+++|+.  +.+..                        ..     ...++.+.....+.+++
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            4568999999999999999999974  22210                        00     01112222223344454


Q ss_pred             eEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCC---CchhhhHHHHHHH
Q psy17467         54 ERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQ---PTFDCLTDWLREI  105 (730)
Q Consensus        54 ~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~---eSfe~L~~wleeI  105 (730)
                        ..+.||||||+++|......++..+|++|||+|+++.   .||+...+|.+.+
T Consensus       121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l  173 (467)
T 1r5b_A          121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHA  173 (467)
T ss_dssp             --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHH
T ss_pred             --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHH
Confidence              6799999999999988888889999999999999986   5676555555544

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.50  E-value=5.8e-14  Score=152.52  Aligned_cols=161  Identities=17%  Similarity=0.225  Sum_probs=107.0

Q ss_pred             HHHHHcCCCCCC-------CCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCC-----
Q psy17467         24 VRRFTQGVFPPG-------QGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISC-----   91 (730)
Q Consensus        24 LnrLl~~~f~~~-------~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd-----   91 (730)
                      +.|+....+.++       ..+|+|...  ..+.+++  +.+++|||+|++.++..|..++++++++|+|||+++     
T Consensus       166 ~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~--~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l  241 (362)
T 1zcb_A          166 LDKLGVPDYIPSQQDILLARRPTKGIHE--YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVL  241 (362)
T ss_dssp             HHHHTSTTCCCCHHHHHHCCCCCSSEEE--EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEE
T ss_pred             HHHHhcCCCCCChhhhhhccCCccceEE--EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccc
Confidence            444544555443       346677543  4556665  889999999999999999999999999999999999     


Q ss_pred             -----CCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         92 -----QPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        92 -----~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                           ..+|+++..|++.+....                              .-.++|++|++||.|+.+..-     .
T Consensus       242 ~ed~~~n~~~es~~~~~~i~~~~------------------------------~~~~~piILv~NK~DL~~~ki-----~  286 (362)
T 1zcb_A          242 MEDRQTNRLTESLNIFETIVNNR------------------------------VFSNVSIILFLNKTDLLEEKV-----Q  286 (362)
T ss_dssp             TTEEEEEHHHHHHHHHHHHHTCG------------------------------GGTTSEEEEEEECHHHHHHHT-----T
T ss_pred             cccccccHHHHHHHHHHHHhcch------------------------------hhCCCCEEEEEEChhhhhhhc-----c
Confidence                 678888888888875432                              115689999999999964210     0


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHH--------H---hcCCeEEEEecCCC
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFA--------K---RHDMYYLETSAKAS  235 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~la--------k---~lg~~fvEtSAktG  235 (730)
                      ...+..|+|.+                             ....++.+++..++        +   ..++.+++|||++|
T Consensus       287 ~~~l~~~fp~y-----------------------------~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~  337 (362)
T 1zcb_A          287 VVSIKDYFLEF-----------------------------EGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINT  337 (362)
T ss_dssp             TCCGGGTCTTC-----------------------------CSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCH
T ss_pred             ccchhhcCccc-----------------------------cCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCc
Confidence            00111222211                             12235677787766        2   34678999999999


Q ss_pred             CChHHHHHHHHHHHHHH
Q psy17467        236 DNVEKLFMQIAAELMEK  252 (730)
Q Consensus       236 ~GVeeLFe~Li~~l~e~  252 (730)
                      .||+++|+++.+.+...
T Consensus       338 ~nV~~vF~~v~~~i~~~  354 (362)
T 1zcb_A          338 ENIRLVFRDVKDTILHD  354 (362)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHH
Confidence            99999999999988654

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.49  E-value=2.7e-14  Score=164.80  Aligned_cols=86  Identities=20%  Similarity=0.218  Sum_probs=65.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCC-------------------------------CCcceeeEEEEEEEeCC
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQ-------------------------------GATIGVDFMIKTVEINN   53 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~-------------------------------~pTig~d~~~~~i~vdg   53 (730)
                      ...+||+++|.+|||||||+++|++.......                               .+.++.+.....+...+
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            45689999999999999999999966332211                               02223233333344444


Q ss_pred             eEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCC
Q psy17467         54 ERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQ   92 (730)
Q Consensus        54 ~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~   92 (730)
                        +.+.||||||+++|......+++.||++|+|+|+++.
T Consensus       245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g  281 (611)
T 3izq_1          245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTN  281 (611)
T ss_dssp             --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHH
T ss_pred             --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCC
Confidence              6799999999999998888899999999999999873

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.48  E-value=5.7e-14  Score=170.10  Aligned_cols=164  Identities=16%  Similarity=0.132  Sum_probs=108.9

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcC-------CCCC-------CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhh
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQG-------VFPP-------GQGATIGVDFMIKTVEINNERIKLQIWDTAGQERF   69 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~-------~f~~-------~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~   69 (730)
                      .+..++|+++|.+++|||||+++|++.       .+..       ....+.|.+.....+.++.....+.||||||+++|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            345699999999999999999999863       1110       01123333333333444444578999999999999


Q ss_pred             hhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCc-eEE
Q psy17467         70 RSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALA-TAL  148 (730)
Q Consensus        70 ~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~P-VVL  148 (730)
                      ......+++.+|++|+|+|+++....+. .+|+..+..                                  .++| +++
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~----------------------------------lgIP~IIV  417 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQ----------------------------------VGVPYIIV  417 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHH----------------------------------HTCSCEEE
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHH----------------------------------cCCCeEEE
Confidence            8888888999999999999998765443 445544432                                  2456 678


Q ss_pred             eccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC----
Q psy17467        149 ASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD----  224 (730)
Q Consensus       149 VGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg----  224 (730)
                      ++||+|+.+++...                                               ....++.+++++..+    
T Consensus       418 VINKiDLv~d~e~l-----------------------------------------------e~i~eEi~elLk~~G~~~~  450 (1289)
T 3avx_A          418 FLNKCDMVDDEELL-----------------------------------------------ELVEMEVRELLSQYDFPGD  450 (1289)
T ss_dssp             EEECCTTCCCHHHH-----------------------------------------------HHHHHHHHHHHHHTTSCTT
T ss_pred             EEeecccccchhhH-----------------------------------------------HHHHHHHHHHHHhcccccc
Confidence            88999986422110                                               011245566666665    


Q ss_pred             -CeEEEEecCCC--------CChHHHHHHHHHHH
Q psy17467        225 -MYYLETSAKAS--------DNVEKLFMQIAAEL  249 (730)
Q Consensus       225 -~~fvEtSAktG--------~GVeeLFe~Li~~l  249 (730)
                       ++++++||++|        .||+++++.|.+.+
T Consensus       451 ~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I  484 (1289)
T 3avx_A          451 DTPIVRGSALKALEGDAEWEAKILELAGFLDSYI  484 (1289)
T ss_dssp             TCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             ceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence             58999999999        46888888776644

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.48  E-value=6.2e-14  Score=152.62  Aligned_cols=267  Identities=13%  Similarity=0.028  Sum_probs=142.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCC-------------------eEEEEEEEeCCCchh
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINN-------------------ERIKLQIWDTAGQER   68 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg-------------------~~v~LqLwDTpG~e~   68 (730)
                      ++|+++|.||||||||+|++++........|..+.+.......+.+                   ....+++|||||..+
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            5799999999999999999997653333223222222222233322                   235799999999876


Q ss_pred             hh----hhh---HhhhccccEEEEEeecCCC----------CchhhhHHHHHHHH--------HHhcccceEEEEeccCc
Q psy17467         69 FR----SIT---QSYYRSAHALILVYDISCQ----------PTFDCLTDWLREIE--------EYASFKVLRVLVGGTSG  123 (730)
Q Consensus        69 ~~----sl~---~~~~r~ADaIILVyDvtd~----------eSfe~L~~wleeI~--------~~~~~~~piVLVg~k~d  123 (730)
                      ..    .+.   ..+++.+|++++|+|+++.          ..+.++..+..++.        +.... .....-+.+ .
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~-~~~~~~~~~-~  159 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLER-LRKEARADR-E  159 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCG-G
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHH-HHhhhccch-h
Confidence            42    232   2458999999999999862          22333322222221        00000 000000000 0


Q ss_pred             hhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCcccccccc
Q psy17467        124 LKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNK  203 (730)
Q Consensus       124 l~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK  203 (730)
                      .....+.+....-  ....+.|+    ...++.+++.                       .....+.-....|.++|+||
T Consensus       160 ~~~~~~~l~~~~~--~L~~~~~~----~~~~~~~~~~-----------------------~~l~~~~~lt~KPvi~v~N~  210 (368)
T 2dby_A          160 RLPLLEAAEGLYV--HLQEGKPA----RTFPPSEAVA-----------------------RFLKETPLLTAKPVIYVANV  210 (368)
T ss_dssp             GHHHHHHHHHHHH--HHHTTCCG----GGSCCCHHHH-----------------------HHHHHSCCGGGSCEEEEEEC
T ss_pred             HHHHHHHHHHHHH--HHhcCCCc----ccCCCCHHHH-----------------------HHHHHHhhhhcCCeEEeccc
Confidence            0000111111100  00011221    0123322211                       12233344556788899999


Q ss_pred             cccc--CC--CCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHHHHHHHHHHHhhhcccc------ccccchhhhc
Q psy17467        204 IDRE--DR--EIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKLTIMHDR------GVGMLTRIYN  273 (730)
Q Consensus       204 ~DL~--~R--~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~~l~e~~~~~~~~~~~~------~~~~l~riy~  273 (730)
                      +|..  +.  ..-.+..+++++..|++++++||+++.++.++++.-....++...-.+ ...++      ..-.++++|+
T Consensus       211 ~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~~~~~~~l~~~g~~~-~gl~~li~~~~~~L~li~~ft  289 (368)
T 2dby_A          211 AEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSGEEARELLAAYGLQE-SGLQRLARAGYRALDLLTFFT  289 (368)
T ss_dssp             CGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCHHHHHHHHHHTTCCS-CHHHHHHHHHHHHTTEEEEEE
T ss_pred             cHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhchHHHHHHHHHhCcch-hhHHHHHHHHHHHhCCEEEEC
Confidence            8743  21  234566788888889999999999877777666543222221100000 00000      1124566777


Q ss_pred             ccccCCCCCCCCCccccchhhHHHHHH-hhcCCCCcee
Q psy17467        274 IKKACGDAKSKPSFLSDKSLESCIKQI-VKKFPNIDIK  310 (730)
Q Consensus       274 ~~~~~~~~~s~P~~l~~~~~~~~~~~~-~k~~p~~~~~  310 (730)
                      ..    ..-.+|-+++++++..+.|-. |.++...|+.
T Consensus       290 ~g----~~e~~aw~i~~g~ta~~~a~~IH~d~~~~fi~  323 (368)
T 2dby_A          290 AG----EKEVRAWTVRRGTKAPRAAGEIHSDMERGFIR  323 (368)
T ss_dssp             ES----SSCEEEEEEETTCBHHHHHHHHCHHHHHSCCE
T ss_pred             CC----CCCcceEEecCCCcHHHHHHhhHHHHHhhCeE
Confidence            43    345578889999999998887 9999998874

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.47  E-value=1.7e-13  Score=150.90  Aligned_cols=163  Identities=16%  Similarity=0.178  Sum_probs=107.8

Q ss_pred             CcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCC----------CCchhhhHHHHHHHHH
Q psy17467         38 ATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISC----------QPTFDCLTDWLREIEE  107 (730)
Q Consensus        38 pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd----------~eSfe~L~~wleeI~~  107 (730)
                      +|+|.+.  ..+.+++  +.+++|||+|+++++++|..|+++++++|+|||+++          ..+|+++..|++.+..
T Consensus       203 ~TiGi~~--~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~  278 (402)
T 1azs_C          203 LTSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWN  278 (402)
T ss_dssp             CCCSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHT
T ss_pred             ceeeeEE--EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHh
Confidence            3555443  4566666  889999999999999999999999999999999999          8999999999988864


Q ss_pred             HhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhh
Q psy17467        108 YASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLA  187 (730)
Q Consensus       108 ~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~  187 (730)
                      ..                              ..+++|++|+|||.|+.+..-. .  .......++|.+..-...    
T Consensus       279 ~~------------------------------~~~~~piiLvgNK~DL~~~ki~-~--~~~~l~~~fp~y~~~~~~----  321 (402)
T 1azs_C          279 NR------------------------------WLRTISVILFLNKQDLLAEKVL-A--GKSKIEDYFPEFARYTTP----  321 (402)
T ss_dssp             CT------------------------------TCSSCCEEEEEECHHHHHHHHH-H--CSSCGGGTCGGGGTCCCC----
T ss_pred             cc------------------------------cCCCCeEEEEEEChhhhhhhhc-c--cccchhhccccccccccc----
Confidence            32                              1257899999999999642100 0  000112334433110000    


Q ss_pred             cccCCcCCccccccccccccCCCCChHHHHHHH-----Hh--------cCCeEEEEecCCCCChHHHHHHHHHHHHHHHH
Q psy17467        188 SLEGHSNNIHCMARNKIDREDREIPTEVGEDFA-----KR--------HDMYYLETSAKASDNVEKLFMQIAAELMEKLA  254 (730)
Q Consensus       188 ~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~la-----k~--------lg~~fvEtSAktG~GVeeLFe~Li~~l~e~~~  254 (730)
                              .     +-.......-+.+++..++     ..        .++.+++|||+++.||+++|..+.+.+.....
T Consensus       322 --------~-----~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~~~l  388 (402)
T 1azs_C          322 --------E-----DATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHL  388 (402)
T ss_dssp             --------S-----SCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------c-----ccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHHHHHH
Confidence                    0     0000000001235566553     22        35678999999999999999999888765543

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.45  E-value=4.7e-13  Score=137.65  Aligned_cols=119  Identities=16%  Similarity=0.181  Sum_probs=87.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhc------
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYR------   78 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r------   78 (730)
                      ..+||+++|.+|||||||+++|++..+. ....+..+.......+.+++  ..+.||||||+.++......+++      
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            4689999999999999999999988752 22234334445556666777  58999999999877665555543      


Q ss_pred             ---cccEEEEEeecCCCCchhhh-HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCC
Q psy17467         79 ---SAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTD  154 (730)
Q Consensus        79 ---~ADaIILVyDvtd~eSfe~L-~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~D  154 (730)
                         .+|++|+|+|+++.. +... ..|+..+......                             ....|+++|+||+|
T Consensus       113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~-----------------------------~~~~~~ivv~nK~D  162 (262)
T 3def_A          113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGK-----------------------------EIWCKTLLVLTHAQ  162 (262)
T ss_dssp             TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCG-----------------------------GGGGGEEEEEECTT
T ss_pred             hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhch-----------------------------hhhcCEEEEEeCcc
Confidence               889999999998765 6544 4688887664311                             12347889999999


Q ss_pred             cc
Q psy17467        155 LD  156 (730)
Q Consensus       155 L~  156 (730)
                      +.
T Consensus       163 l~  164 (262)
T 3def_A          163 FS  164 (262)
T ss_dssp             CC
T ss_pred             cC
Confidence            85

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.42  E-value=2.7e-13  Score=155.96  Aligned_cols=86  Identities=24%  Similarity=0.246  Sum_probs=62.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCC----CCCcceeeEEEEEE------------EeCCeEEEEEEEeCCCchhhh
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPG----QGATIGVDFMIKTV------------EINNERIKLQIWDTAGQERFR   70 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~----~~pTig~d~~~~~i------------~vdg~~v~LqLwDTpG~e~~~   70 (730)
                      ..+|+|+|.+|+|||||+++|++..+...    ..++++..+.....            .++.....+.||||||+++|.
T Consensus         5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~   84 (594)
T 1g7s_A            5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT   84 (594)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred             CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence            47899999999999999999987644321    22344432221110            000011258999999999999


Q ss_pred             hhhHhhhccccEEEEEeecCCC
Q psy17467         71 SITQSYYRSAHALILVYDISCQ   92 (730)
Q Consensus        71 sl~~~~~r~ADaIILVyDvtd~   92 (730)
                      .++..+++.+|++|+|+|+++.
T Consensus        85 ~~~~r~~~~aD~aILVvDa~~G  106 (594)
T 1g7s_A           85 TLRKRGGALADLAILIVDINEG  106 (594)
T ss_dssp             TSBCSSSBSCSEEEEEEETTTC
T ss_pred             HHHHHHHhhCCEEEEEEECCCC
Confidence            9998899999999999999994

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.42  E-value=2.3e-13  Score=146.36  Aligned_cols=159  Identities=18%  Similarity=0.220  Sum_probs=102.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEE---------------------------------------
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIK---------------------------------------   47 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~---------------------------------------   47 (730)
                      .-+|+|+|++|||||||++++++..+.+....+++......                                       
T Consensus        34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~  113 (360)
T 3t34_A           34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR  113 (360)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence            34899999999999999999999887443322221100000                                       


Q ss_pred             -------------EEEe-CCeEEEEEEEeCCCchhh-------------hhhhHhhhccccEEEEEeecCCCCchhhhHH
Q psy17467         48 -------------TVEI-NNERIKLQIWDTAGQERF-------------RSITQSYYRSAHALILVYDISCQPTFDCLTD  100 (730)
Q Consensus        48 -------------~i~v-dg~~v~LqLwDTpG~e~~-------------~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~  100 (730)
                                   .+.+ ......+.+|||||..++             ..+...|++++|++|+|+|.++.....  ..
T Consensus       114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~  191 (360)
T 3t34_A          114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SD  191 (360)
T ss_dssp             TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CH
T ss_pred             hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HH
Confidence                         0111 011235899999998765             556778899999999999987654332  34


Q ss_pred             HHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccc
Q psy17467        101 WLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARN  180 (730)
Q Consensus       101 wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~  180 (730)
                      |+..+....                               ..+.|+++|+||+|+.+.                      
T Consensus       192 ~~~l~~~~~-------------------------------~~~~~~i~V~nK~Dl~~~----------------------  218 (360)
T 3t34_A          192 AIKISREVD-------------------------------PSGDRTFGVLTKIDLMDK----------------------  218 (360)
T ss_dssp             HHHHHHHSC-------------------------------TTCTTEEEEEECGGGCCT----------------------
T ss_pred             HHHHHHHhc-------------------------------ccCCCEEEEEeCCccCCC----------------------
Confidence            444443321                               135678888888888531                      


Q ss_pred             hhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHHH
Q psy17467        181 EACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE  248 (730)
Q Consensus       181 ~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~~  248 (730)
                                                  +....+.++.++..++..|+++|++++.|+++.+..+...
T Consensus       219 ----------------------------~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~  258 (360)
T 3t34_A          219 ----------------------------GTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAAR  258 (360)
T ss_dssp             ----------------------------TCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHH
T ss_pred             ----------------------------cccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHH
Confidence                                        1122233344445667889999999999998877665433

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.41  E-value=6.3e-13  Score=155.47  Aligned_cols=118  Identities=16%  Similarity=0.212  Sum_probs=80.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeEE-------EEEEEe-CCe----------------------
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPP-GQGATIGVDFM-------IKTVEI-NNE----------------------   54 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~-~~~pTig~d~~-------~~~i~v-dg~----------------------   54 (730)
                      ..++|+|+|.+|||||||+|+|++..+.+ ...|++.....       ..++.+ ++.                      
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            35899999999999999999999877533 33344310000       001111 000                      


Q ss_pred             -----------------------E--EEEEEEeCCCchhh---hhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHH
Q psy17467         55 -----------------------R--IKLQIWDTAGQERF---RSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIE  106 (730)
Q Consensus        55 -----------------------~--v~LqLwDTpG~e~~---~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~  106 (730)
                                             .  ..+.||||||....   ......+++.||++|+|+|++++.+..+...|...+.
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~  227 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK  227 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence                                   0  24899999997653   3455678999999999999999888877665544331


Q ss_pred             HHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467        107 EYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE  157 (730)
Q Consensus       107 ~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~  157 (730)
                      .                                  .+.|+++|+||+|+..
T Consensus       228 ~----------------------------------~~~~iiiVlNK~Dl~~  244 (695)
T 2j69_A          228 G----------------------------------RGLTVFFLVNAWDQVR  244 (695)
T ss_dssp             T----------------------------------SCCCEEEEEECGGGGG
T ss_pred             h----------------------------------hCCCEEEEEECccccc
Confidence            1                                  2457888999999864

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.40  E-value=4.8e-14  Score=162.13  Aligned_cols=88  Identities=23%  Similarity=0.234  Sum_probs=47.7

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCC-------------------------------CCCCCCCcceeeEEEEEEEeC
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGV-------------------------------FPPGQGATIGVDFMIKTVEIN   52 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~-------------------------------f~~~~~pTig~d~~~~~i~vd   52 (730)
                      .+..++|+++|.+|+|||||+++|+...                               +.....+.++.+.....+..+
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            3456899999999999999999996421                               001112233333333334334


Q ss_pred             CeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCC
Q psy17467         53 NERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQP   93 (730)
Q Consensus        53 g~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~e   93 (730)
                        ...+.||||||+.+|......+++.+|++|||+|+++..
T Consensus       254 --~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~  292 (592)
T 3mca_A          254 --KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNN  292 (592)
T ss_dssp             -------CCEEESSSEEEEECCC-------CCSEEEEEECC
T ss_pred             --CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCc
Confidence              377999999999999888888899999999999999765

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.40  E-value=9.5e-13  Score=145.48  Aligned_cols=159  Identities=19%  Similarity=0.195  Sum_probs=109.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh----hhhhhHhh---hcccc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER----FRSITQSY---YRSAH   81 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~----~~sl~~~~---~r~AD   81 (730)
                      .|++||++|||||||++++++........+..+.......+.+++ ...+.+||++|..+    +..+...+   +..++
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            479999999999999999998754333333333344445566654 24689999999743    22222233   45799


Q ss_pred             EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467         82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV  161 (730)
Q Consensus        82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~  161 (730)
                      +++.|+|++ ...++++..|..++......                             -.+.|.++++||.|+...   
T Consensus       238 ~lL~vvDls-~~~~~~ls~g~~el~~la~a-----------------------------L~~~P~ILVlNKlDl~~~---  284 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPA-----------------------------LLRRPSLVALNKVDLLEE---  284 (416)
T ss_dssp             EEEEEEETT-SCHHHHHHHHHHHHHHHCHH-----------------------------HHHSCEEEEEECCTTSCH---
T ss_pred             hhhEEeCCc-cCCHHHHHHHHHHHHHHhHH-----------------------------hhcCCEEEEEECCChhhH---
Confidence            999999998 77788888887776554210                             023566666677777531   


Q ss_pred             HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHH
Q psy17467        162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL  241 (730)
Q Consensus       162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeL  241 (730)
                                                                       ...++..+.++..++.++++||++++||+++
T Consensus       285 -------------------------------------------------~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL  315 (416)
T 1udx_A          285 -------------------------------------------------EAVKALADALAREGLAVLPVSALTGAGLPAL  315 (416)
T ss_dssp             -------------------------------------------------HHHHHHHHHHHTTTSCEEECCTTTCTTHHHH
T ss_pred             -------------------------------------------------HHHHHHHHHHHhcCCeEEEEECCCccCHHHH
Confidence                                                             1113344455566789999999999999999


Q ss_pred             HHHHHHHHH
Q psy17467        242 FMQIAAELM  250 (730)
Q Consensus       242 Fe~Li~~l~  250 (730)
                      ++.|.+.+.
T Consensus       316 ~~~i~~~l~  324 (416)
T 1udx_A          316 KEALHALVR  324 (416)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998873

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.40  E-value=1.5e-12  Score=135.95  Aligned_cols=27  Identities=26%  Similarity=0.426  Sum_probs=24.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCC
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVF   32 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f   32 (730)
                      ...+|+|+|.+|||||||+|++++..+
T Consensus        23 ~~~~I~vvG~~~~GKSTlln~l~g~~~   49 (315)
T 1jwy_B           23 DLPQIVVVGSQSSGKSSVLENIVGRDF   49 (315)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence            357899999999999999999999876

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.38  E-value=2.7e-13  Score=149.91  Aligned_cols=161  Identities=16%  Similarity=0.189  Sum_probs=85.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCC--------CCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh------
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQ--------GATIGVDFMIKTVEINNERIKLQIWDTAGQERFR------   70 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~--------~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~------   70 (730)
                      +..++|+|+|++|||||||+++|++..+....        .++++.+.....+...+....+.+||++|.....      
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~  108 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW  108 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence            45689999999999999999999987763221        2333322222222334445679999999975431      


Q ss_pred             -hh------------------hHhhhccccEEEEEeecCCC-CchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHH
Q psy17467         71 -SI------------------TQSYYRSAHALILVYDISCQ-PTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNE  129 (730)
Q Consensus        71 -sl------------------~~~~~r~ADaIILVyDvtd~-eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~  129 (730)
                       .+                  ...++.++++.+++|+++.. .++..+. .|+..+.                       
T Consensus       109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----------------------  165 (418)
T 2qag_C          109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----------------------  165 (418)
T ss_dssp             HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----------------------
Confidence             11                  12345667777777777654 5676654 4555441                       


Q ss_pred             HHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCC
Q psy17467        130 MASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDR  209 (730)
Q Consensus       130 i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R  209 (730)
                                  .+.|+++|+||+|+.+.....                                               
T Consensus       166 ------------~~v~iIlVinK~Dll~~~ev~-----------------------------------------------  186 (418)
T 2qag_C          166 ------------EKVNIIPLIAKADTLTPEECQ-----------------------------------------------  186 (418)
T ss_dssp             ------------TTSEEEEEEESTTSSCHHHHH-----------------------------------------------
T ss_pred             ------------ccCcEEEEEEcccCccHHHHH-----------------------------------------------
Confidence                        356788889999986432110                                               


Q ss_pred             CCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHHH
Q psy17467        210 EIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE  248 (730)
Q Consensus       210 ~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~~  248 (730)
                       .-.+++.+.+...|+.++++||+++.|++++|..+...
T Consensus       187 -~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~  224 (418)
T 2qag_C          187 -QFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR  224 (418)
T ss_dssp             -HHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred             -HHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence             01256777788889999999999999999988777654

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.38  E-value=2e-12  Score=150.48  Aligned_cols=91  Identities=18%  Similarity=0.184  Sum_probs=66.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCC-------------CC-----CcceeeEEEEEEEeCCeEEEEEEEeCCCc
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPG-------------QG-----ATIGVDFMIKTVEINNERIKLQIWDTAGQ   66 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~-------------~~-----pTig~d~~~~~i~vdg~~v~LqLwDTpG~   66 (730)
                      +...+|+|+|.+|+|||||+++|++......             +.     ..++.......+...+  +.++||||||+
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~~nliDTpG~   84 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGY   84 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCS
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCC--EEEEEEeCCCc
Confidence            3457899999999999999999984332211             00     1122223333444444  78999999999


Q ss_pred             hhhhhhhHhhhccccEEEEEeecCCCCchhh
Q psy17467         67 ERFRSITQSYYRSAHALILVYDISCQPTFDC   97 (730)
Q Consensus        67 e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~   97 (730)
                      .++......+++.+|++++|+|+++..+.+.
T Consensus        85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt  115 (665)
T 2dy1_A           85 GDFVGEIRGALEAADAALVAVSAEAGVQVGT  115 (665)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCSCHHH
T ss_pred             cchHHHHHHHHhhcCcEEEEEcCCcccchhH
Confidence            9998888999999999999999988755443

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.37  E-value=3.4e-12  Score=131.69  Aligned_cols=120  Identities=17%  Similarity=0.160  Sum_probs=81.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhH-------hh-
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPP-GQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQ-------SY-   76 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~-~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~-------~~-   76 (730)
                      ..++|+++|.+|||||||+|+|++..+.. ...+..+.+.....+..++  +.+.||||||..++.....       .+ 
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            46899999999999999999999887632 2223333233333444455  7899999999876543322       11 


Q ss_pred             -hccccEEEEEeecCCCCchhhh-HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCC
Q psy17467         77 -YRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTD  154 (730)
Q Consensus        77 -~r~ADaIILVyDvtd~eSfe~L-~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~D  154 (730)
                       .+.+|++|+|+|++.. ++... ..|+..+......                             ....|+++|+||+|
T Consensus       116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~-----------------------------~~~~~iivV~nK~D  165 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGK-----------------------------GIWNKAIVALTHAQ  165 (270)
T ss_dssp             TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCG-----------------------------GGGGGEEEEEECCS
T ss_pred             hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCc-----------------------------ccccCEEEEEECcc
Confidence             3479999999999764 46544 4677777554210                             12368899999999


Q ss_pred             cch
Q psy17467        155 LDE  157 (730)
Q Consensus       155 L~~  157 (730)
                      +.+
T Consensus       166 l~~  168 (270)
T 1h65_A          166 FSP  168 (270)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            864

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.36  E-value=3.9e-12  Score=148.70  Aligned_cols=96  Identities=23%  Similarity=0.242  Sum_probs=70.9

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcC--CCC------C------------CCCCcceeeEEEEEEEeCCeEEEEEEEeC
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQG--VFP------P------------GQGATIGVDFMIKTVEINNERIKLQIWDT   63 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~--~f~------~------------~~~pTig~d~~~~~i~vdg~~v~LqLwDT   63 (730)
                      .+...+|+|+|.+|+|||||+++|+..  .+.      .            ....|++  .....+.+++  +.+.||||
T Consensus         9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~--~~~~~~~~~~--~~i~liDT   84 (691)
T 1dar_A            9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITIT--AAVTTCFWKD--HRINIIDT   84 (691)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHCC------------------------------CCEEEEEETT--EEEEEECC
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccc--cceEEEEECC--eEEEEEEC
Confidence            356789999999999999999999831  110      0            1112222  2233444555  78999999


Q ss_pred             CCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHH
Q psy17467         64 AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLR  103 (730)
Q Consensus        64 pG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wle  103 (730)
                      ||+.+|...+..+++.+|++|+|+|+++..+++....|..
T Consensus        85 PG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~  124 (691)
T 1dar_A           85 PGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ  124 (691)
T ss_dssp             CSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH
T ss_pred             cCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH
Confidence            9999999999999999999999999999988887765643

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.35  E-value=1.7e-13  Score=135.87  Aligned_cols=56  Identities=25%  Similarity=0.188  Sum_probs=43.1

Q ss_pred             CccccccccccccC-CCCChHHHHHHHHhc--CCeEEEEecCCCCChHHHHHHHHHHHH
Q psy17467        195 NIHCMARNKIDRED-REIPTEVGEDFAKRH--DMYYLETSAKASDNVEKLFMQIAAELM  250 (730)
Q Consensus       195 ~~~ivVgNK~DL~~-R~Vs~ee~~~lak~l--g~~fvEtSAktG~GVeeLFe~Li~~l~  250 (730)
                      .|.++|+||+|+.. +.+..+++.++++.+  ++++++|||++|.|++++|+.+.+.+.
T Consensus       165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  223 (226)
T 2hf9_A          165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK  223 (226)
T ss_dssp             TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence            45667777777643 235667777777754  679999999999999999999988764

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.34  E-value=3.5e-12  Score=144.91  Aligned_cols=87  Identities=14%  Similarity=0.165  Sum_probs=61.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCC--------------C------CCcceeeEE--EEEEEeCCeEEEEEEEeC
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPG--------------Q------GATIGVDFM--IKTVEINNERIKLQIWDT   63 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~--------------~------~pTig~d~~--~~~i~vdg~~v~LqLwDT   63 (730)
                      ...+|+|+|.+|||||||+++|+...-...              .      ..+.|.+..  ...+.+++  +.+.||||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liDT   89 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLDT   89 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEECC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEEC
Confidence            468999999999999999999986311100              0      011121111  12334444  78999999


Q ss_pred             CCchhhhhhhHhhhccccEEEEEeecCCCCc
Q psy17467         64 AGQERFRSITQSYYRSAHALILVYDISCQPT   94 (730)
Q Consensus        64 pG~e~~~sl~~~~~r~ADaIILVyDvtd~eS   94 (730)
                      ||+.+|......+++.+|++|+|+|+++...
T Consensus        90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~  120 (529)
T 2h5e_A           90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVE  120 (529)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSC
T ss_pred             CCChhHHHHHHHHHHHCCEEEEEEeCCccch
Confidence            9999998888889999999999999998643

>3p8c_B NCK-associated protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens}

Probab=99.34  E-value=3.8e-13  Score=160.71  Aligned_cols=87  Identities=61%  Similarity=1.087  Sum_probs=76.2

Q ss_pred             HHHHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHHhhcCCCCceee----eccccccchhhHHHhHh
Q psy17467        253 LAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNIDIKS----VSGISQIRSDIVKSLSL  328 (730)
Q Consensus       253 ~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~~k~~p~~~~~~----~~~~~~~~~~~~~~l~~  328 (730)
                      ..++.....+++.|.++|+|+.++.|++.+.+|.+++++...+.++.+.|+||+.+.+.    ...+...++++++.|+.
T Consensus        13 laEkl~iLn~r~~g~LtrlYnikk~~~~~k~kp~fl~dk~~e~~iK~i~kKFP~id~~~~~~~~~~~~~~~~ei~~~L~~   92 (1128)
T 3p8c_B           13 LAEKLTILNDRGVGMLTRLYNIKKACGDPKAKPSYLIDKNLESAVKFIVRKFPAVETRNNNQQLAQLQKEKSEILKNLAL   92 (1128)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSCGGGTCTTTHHHHHHHHHHTTCCC----CCTTHHHHHTHHHHHHHHHH
T ss_pred             hhHHHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCcCChhhhHHHHHHHHhcCCCCCcccccccchHHHHHHHHHHHHHHH
Confidence            34455566778899999999999999999999999999999999999999999999987    55777889999999999


Q ss_pred             hhhhhhccCCc
Q psy17467        329 YYYTFVDLLHF  339 (730)
Q Consensus       329 ~~~~~~~~~~~  339 (730)
                      ||++|+|+++|
T Consensus        93 yY~tf~Dl~df  103 (1128)
T 3p8c_B           93 YYFTFVDVMEF  103 (1128)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999999

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.31  E-value=1.8e-12  Score=142.32  Aligned_cols=260  Identities=12%  Similarity=0.041  Sum_probs=127.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe---------------EEEEEEEeCCCchhhh
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE---------------RIKLQIWDTAGQERFR   70 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~---------------~v~LqLwDTpG~e~~~   70 (730)
                      ..++|+++|.||||||||+|++++..+.....|+.+.++....+.+.+.               ...+++|||||..+..
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a  100 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA  100 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence            3478999999999999999999998776666677776666677776543               2359999999987654


Q ss_pred             h-------hhHhhhccccEEEEEeecCCCCchhhhHH----------HHHHHHHHhcccceEEEEeccCchhhHHHHHhh
Q psy17467         71 S-------ITQSYYRSAHALILVYDISCQPTFDCLTD----------WLREIEEYASFKVLRVLVGGTSGLKIVNEMASA  133 (730)
Q Consensus        71 s-------l~~~~~r~ADaIILVyDvtd~eSfe~L~~----------wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~  133 (730)
                      +       .+..+++++|++++|+|+++..++..+..          ...++.-              .|.+.+...+..
T Consensus       101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v~~~~dP~~di~~i~~El~l--------------~d~~~~~k~~~~  166 (396)
T 2ohf_A          101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQL--------------KDEEMIGPIIDK  166 (396)
T ss_dssp             ------CCHHHHHHHTSSSEEEEEEC------------CTTHHHHHHHHHHHHH--------------HHHHHHHHHHHT
T ss_pred             chhhHHHHHHHHHHHhcCeEEEEEecCCCcchhhhcCCCChHHHHHHhhhhhhh--------------hhHHHHHHhhhh
Confidence            3       34567899999999999998766543321          1111100              000001000000


Q ss_pred             hcccccCCCCCceEEeccCCCcchhhHHHH----HHHHhhhhhc-ccccccchhhhhhhcccCCcCCccccccccccc--
Q psy17467        134 AGLLCTVDPALATALASDKTDLDEDEHVLA----CLLMVFVAVC-IPKLARNEACFYLASLEGHSNNIHCMARNKIDR--  206 (730)
Q Consensus       134 ~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~----~l~~~~~a~~-~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL--  206 (730)
                      ..       ..+.- -|.|..... ...+.    .|+-...... .+.+...+.- ......-....|.+.+.|+.+.  
T Consensus       167 ~~-------k~~~~-~g~~~~~~~-~~ll~~i~~~L~e~~~~~~~~~~~~~~e~e-~i~~~~llt~KPviy~~Nv~e~~~  236 (396)
T 2ohf_A          167 LE-------KVAVR-GGDKKLKPE-YDIMCKVKSWVIDQKKPVRFYHDWNDKEIE-VLNKHLFLTSKPMVYLVNLSEKDY  236 (396)
T ss_dssp             TC-------SCC---------CCH-HHHHHHHHHHTTC--CCGGGCCCCCHHHHH-HHHHHCCGGGSCEEEEEECCHHHH
T ss_pred             hh-------hhhhc-ccchhhhhH-HHHHHHHHHHHHhcCcchhhcccCCHHHHH-HHHHHHHHhCCceEEEEEecHHHh
Confidence            00       00000 001110000 00000    0000000000 1111111111 1133444567899999999742  


Q ss_pred             cC-CCCChHHHHHHHHh--cCCeEEEEecCCC---------------------CChHHHHHHHHHHHHHHHHHHhhhccc
Q psy17467        207 ED-REIPTEVGEDFAKR--HDMYYLETSAKAS---------------------DNVEKLFMQIAAELMEKLAEKLTIMHD  262 (730)
Q Consensus       207 ~~-R~Vs~ee~~~lak~--lg~~fvEtSAktG---------------------~GVeeLFe~Li~~l~e~~~~~~~~~~~  262 (730)
                      .. ...-.+..++++..  .++.++.+||+..                     .|++.+...+++.+             
T Consensus       237 ~~~~n~~~~~v~~~~~~~~~~~~~v~~sa~~E~~l~~l~~~e~~~~l~~~g~~~~l~~li~~~~~~L-------------  303 (396)
T 2ohf_A          237 IRKKNKWLIKIKEWVDKYDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGFAAL-------------  303 (396)
T ss_dssp             HHTCCHHHHHHHHHHHHHSTTCEEEEECHHHHHHHHHSCHHHHHHHHHHTTCCCSHHHHHHHHHHHT-------------
T ss_pred             cccccHHHHHHHHHHHhhCCCCeEEEEEcHHHHHHhhCCHHHHHHHHHHhCCCchHHHHHHHHHHHh-------------
Confidence            21 11112334555554  3688999999853                     34555555555544             


Q ss_pred             cccccchhhhcccccCCCCCCCCCccccchhhHHHHHH-hhcCCCCcee
Q psy17467        263 RGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQI-VKKFPNIDIK  310 (730)
Q Consensus       263 ~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~-~k~~p~~~~~  310 (730)
                          .+++.||..+    ...++-++.++++..+.|-. |.++...|+.
T Consensus       304 ----~li~~fT~g~----~evrawti~~g~ta~~aAg~IH~D~~~gFi~  344 (396)
T 2ohf_A          304 ----QLEYFFTAGP----DEVRAWTIRKGTKAPQAAGKIHTDFEKGFIM  344 (396)
T ss_dssp             ----TEEEEEEESS----SEEEEEEEETTCBHHHHHHTTCTHHHHHEEE
T ss_pred             ----CCEEEECCCC----CcceeEEecCCCcHHHHHhhhHHHHHhcceE
Confidence                6777777653    23478889999999998887 9999988875

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.31  E-value=2.1e-13  Score=146.57  Aligned_cols=28  Identities=25%  Similarity=0.422  Sum_probs=25.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCC
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFP   33 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~   33 (730)
                      ...+|+|+|++|||||||+|+|++..+.
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~   57 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFL   57 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence            3579999999999999999999998874

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.28  E-value=2.2e-11  Score=142.43  Aligned_cols=96  Identities=18%  Similarity=0.182  Sum_probs=70.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHc--CCCCC-----------CC-----CCcceeeEEEEEEEeCCeEEEEEEEeCCCc
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQ--GVFPP-----------GQ-----GATIGVDFMIKTVEINNERIKLQIWDTAGQ   66 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~--~~f~~-----------~~-----~pTig~d~~~~~i~vdg~~v~LqLwDTpG~   66 (730)
                      +...+|+|+|.+|||||||+++|+.  +.+..           .+     .+.++.......+.+++  +.+.||||||+
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~   85 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPGH   85 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcCC
Confidence            4578999999999999999999984  22210           00     01111122233455555  78999999999


Q ss_pred             hhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHH
Q psy17467         67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWL  102 (730)
Q Consensus        67 e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wl  102 (730)
                      .++...+..+++.+|++|+|+|+++..+++....|.
T Consensus        86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~  121 (693)
T 2xex_A           86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR  121 (693)
T ss_dssp             SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH
T ss_pred             cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH
Confidence            999888899999999999999999988887765554

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.28  E-value=4.6e-12  Score=125.01  Aligned_cols=41  Identities=17%  Similarity=0.017  Sum_probs=30.6

Q ss_pred             ChHHHHHHHHhc--CCeEEEEecCCCCChHHHHHHHHHHHHHH
Q psy17467        212 PTEVGEDFAKRH--DMYYLETSAKASDNVEKLFMQIAAELMEK  252 (730)
Q Consensus       212 s~ee~~~lak~l--g~~fvEtSAktG~GVeeLFe~Li~~l~e~  252 (730)
                      ..++..+.++..  +++++++||++|.|++++|+.+.+.+..+
T Consensus       173 ~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          173 DVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             CHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence            345555555544  47899999999999999999998877443

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.27  E-value=5.6e-11  Score=139.25  Aligned_cols=98  Identities=18%  Similarity=0.131  Sum_probs=69.7

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcC--CCCC-----------CC-----CCcceeeEEEEEEEeC-----CeEEEEEE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQG--VFPP-----------GQ-----GATIGVDFMIKTVEIN-----NERIKLQI   60 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~--~f~~-----------~~-----~pTig~d~~~~~i~vd-----g~~v~LqL   60 (730)
                      .+...+|+|+|..|+|||||+++|+..  .+..           .+     ...++.......+.++     +..+.++|
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI   86 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence            355689999999999999999999742  1110           00     0111222222233333     34488999


Q ss_pred             EeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHH
Q psy17467         61 WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDW  101 (730)
Q Consensus        61 wDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~w  101 (730)
                      |||||+.+|...+..+++.+|++|+|+|+++..+.+....|
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~  127 (704)
T 2rdo_7           87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW  127 (704)
T ss_pred             EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH
Confidence            99999999988889999999999999999988766655444

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.19  E-value=2.3e-11  Score=145.14  Aligned_cols=119  Identities=16%  Similarity=0.178  Sum_probs=86.1

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcC------------CCCC----CCC--CcceeeEEEEEEE------------eC
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQG------------VFPP----GQG--ATIGVDFMIKTVE------------IN   52 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~------------~f~~----~~~--pTig~d~~~~~i~------------vd   52 (730)
                      ..+...||+|+|..|||||||+++|+..            .+..    ...  .|++.......+.            .+
T Consensus        15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~   94 (842)
T 1n0u_A           15 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD   94 (842)
T ss_dssp             CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred             CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccccccccccc
Confidence            4556789999999999999999999863            1110    001  1222222222222            23


Q ss_pred             CeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHh
Q psy17467         53 NERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMAS  132 (730)
Q Consensus        53 g~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~  132 (730)
                      +..+.++||||||+.+|...+..+++.+|++|+|+|+++..+++....|.....                          
T Consensus        95 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~--------------------------  148 (842)
T 1n0u_A           95 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG--------------------------  148 (842)
T ss_dssp             SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH--------------------------
T ss_pred             CCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--------------------------
Confidence            457899999999999999999999999999999999999999988765643321                          


Q ss_pred             hhcccccCCCCCceEEeccCCCcc
Q psy17467        133 AAGLLCTVDPALATALASDKTDLD  156 (730)
Q Consensus       133 ~~g~~~~~~~~~PVVLVGNK~DL~  156 (730)
                               .+.|+++++||+|+.
T Consensus       149 ---------~~~p~ilviNK~D~~  163 (842)
T 1n0u_A          149 ---------ERIKPVVVINKVDRA  163 (842)
T ss_dssp             ---------TTCEEEEEEECHHHH
T ss_pred             ---------cCCCeEEEEECCCcc
Confidence                     356788888999986

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.17  E-value=4e-11  Score=129.11  Aligned_cols=28  Identities=14%  Similarity=0.064  Sum_probs=25.0

Q ss_pred             CCeEEEEecCCCCChHHHHHHHHHHHHH
Q psy17467        224 DMYYLETSAKASDNVEKLFMQIAAELME  251 (730)
Q Consensus       224 g~~fvEtSAktG~GVeeLFe~Li~~l~e  251 (730)
                      ++++++|||++|.||+++++.|.+.+..
T Consensus       257 ~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          257 RPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             CCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999887744

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.14  E-value=5.7e-11  Score=135.50  Aligned_cols=119  Identities=18%  Similarity=0.228  Sum_probs=83.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCC---CCCCCcceeeEEEEEEEeCCe---------------------------
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFP---PGQGATIGVDFMIKTVEINNE---------------------------   54 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~---~~~~pTig~d~~~~~i~vdg~---------------------------   54 (730)
                      +...+|+|+|.+|||||||+|+|++..+.   ....|+....  . .+..+..                           
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~--~-~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~  139 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCF--V-AVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTF  139 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSE--E-EEECCSSSEEECCC------------------CC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceE--E-EEEECCcccccCCceeeecCcccHHHHhhhcccc
Confidence            44689999999999999999999998863   3444443211  0 1111000                           


Q ss_pred             ---E----------EEEEEEeCCCchh-----------hhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhc
Q psy17467         55 ---R----------IKLQIWDTAGQER-----------FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYAS  110 (730)
Q Consensus        55 ---~----------v~LqLwDTpG~e~-----------~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~  110 (730)
                         .          ..+.||||||...           +......++..+|++|+|+|+++....+....|+..+..   
T Consensus       140 ~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---  216 (550)
T 2qpt_A          140 LNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---  216 (550)
T ss_dssp             CTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---
T ss_pred             cccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---
Confidence               0          2589999999864           456667788999999999999987666666666655422   


Q ss_pred             ccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhH
Q psy17467        111 FKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEH  160 (730)
Q Consensus       111 ~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~  160 (730)
                                                     .+.|+++|+||+|+.+.++
T Consensus       217 -------------------------------~~~pvilVlNK~Dl~~~~e  235 (550)
T 2qpt_A          217 -------------------------------HEDKIRVVLNKADMVETQQ  235 (550)
T ss_dssp             -------------------------------CGGGEEEEEECGGGSCHHH
T ss_pred             -------------------------------cCCCEEEEEECCCccCHHH
Confidence                                           2467899999999986443

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.11  E-value=1.6e-10  Score=126.91  Aligned_cols=250  Identities=14%  Similarity=0.102  Sum_probs=149.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCe---------------EEEEEEEeCCCchh--
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNE---------------RIKLQIWDTAGQER--   68 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~---------------~v~LqLwDTpG~e~--   68 (730)
                      -.+|.++|.+|||||||+|++++... .....|+++.++....+.+.+.               ...+.+||++|...  
T Consensus        20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~   99 (392)
T 1ni3_A           20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA   99 (392)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence            46899999999999999999999876 6666677766676777777652               14689999999543  


Q ss_pred             -----hhhhhHhhhccccEEEEEeecCCCCch----------hhh---HH----H--------HHHHHHH-hcccceEEE
Q psy17467         69 -----FRSITQSYYRSAHALILVYDISCQPTF----------DCL---TD----W--------LREIEEY-ASFKVLRVL  117 (730)
Q Consensus        69 -----~~sl~~~~~r~ADaIILVyDvtd~eSf----------e~L---~~----w--------leeI~~~-~~~~~piVL  117 (730)
                           ....+...++.+|++++|+|+.+....          .++   .+    |        ++.+... ...+..+  
T Consensus       100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~d~~i~~v~~~~dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti--  177 (392)
T 1ni3_A          100 STGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTL--  177 (392)
T ss_dssp             CSSSSSCHHHHHHHTTCSEEEEEEECCCTTCSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSS--
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeccccCcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCcc--
Confidence                 222344567899999999998752111          111   11    1        1111111 1000000  


Q ss_pred             EeccCchhhHHHHHhhhcccccCCCC-CceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCc
Q psy17467        118 VGGTSGLKIVNEMASAAGLLCTVDPA-LATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNI  196 (730)
Q Consensus       118 Vg~k~dl~~~~~i~~~~g~~~~~~~~-~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~  196 (730)
                      +  .-.+..+.++.....-  ....+ .++. .+   +..+++                      . .....+......|
T Consensus       178 ~--sh~~~~~~~l~~~i~~--~L~~G~~~~~-~~---~~~~~e----------------------~-e~i~~~~~lt~kp  226 (392)
T 1ni3_A          178 E--MKAKKEEQAIIEKVYQ--YLTETKQPIR-KG---DWSNRE----------------------V-EIINSLYLLTAKP  226 (392)
T ss_dssp             S--HHHHHHHHHHHHHHHH--HHHTTCSCGG-GS---CCCHHH----------------------H-HHHHTTCCGGGSC
T ss_pred             c--cccHHHHHHHHHHHHH--HhccCCceee-cC---CCCHHH----------------------H-HHHHHHhhhccCc
Confidence            0  0112222222222210  00111 1111 01   111110                      0 1111334456778


Q ss_pred             ccccccccccc---CCCCChHHHHHHHHhcC--CeEEEEecCC---------------------CCChHHHHHHHHHHHH
Q psy17467        197 HCMARNKIDRE---DREIPTEVGEDFAKRHD--MYYLETSAKA---------------------SDNVEKLFMQIAAELM  250 (730)
Q Consensus       197 ~ivVgNK~DL~---~R~Vs~ee~~~lak~lg--~~fvEtSAkt---------------------G~GVeeLFe~Li~~l~  250 (730)
                      .+.+.|+.|..   +...-.+..++++...+  ..++.+||+.                     +.|++.+....++.+ 
T Consensus       227 ~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~i~~~~~~L-  305 (392)
T 1ni3_A          227 VIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTGYNAL-  305 (392)
T ss_dssp             EEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHHHHHHHHHT-
T ss_pred             eEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHHHHHHHHHh-
Confidence            88899998842   11222456677777765  7899999875                     577888888877776 


Q ss_pred             HHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHH-hhcCCCCcee
Q psy17467        251 EKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQI-VKKFPNIDIK  310 (730)
Q Consensus       251 e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~-~k~~p~~~~~  310 (730)
                                      .++..|+..+    ...++-+++++.+....|-. |.+|...|+.
T Consensus       306 ----------------~l~~~ft~g~----~e~rawti~~G~~a~~aag~IH~d~~~gfi~  346 (392)
T 1ni3_A          306 ----------------NLINYFTCGE----DEVRSWTIRKGTKAPQAAGVIHTDFEKAFVV  346 (392)
T ss_dssp             ----------------TEEEEEECCS----SEEEEEEEETTCBHHHHHHHHCHHHHHTCSE
T ss_pred             ----------------CCEEEECCCC----CcceeEEeCCCCcHHHHccccchhhhhccEE
Confidence                            7888888543    23477888999999988876 9999998875

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.00  E-value=1.9e-09  Score=116.22  Aligned_cols=27  Identities=7%  Similarity=0.151  Sum_probs=23.7

Q ss_pred             CCeEEEEecCCCCChHHHHHHHHHHHH
Q psy17467        224 DMYYLETSAKASDNVEKLFMQIAAELM  250 (730)
Q Consensus       224 g~~fvEtSAktG~GVeeLFe~Li~~l~  250 (730)
                      +.+++.+||++|.|++++++.|.+.+.
T Consensus       252 ~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          252 KPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             CCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            467899999999999999999988763

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.98  E-value=7.5e-10  Score=118.64  Aligned_cols=36  Identities=14%  Similarity=0.086  Sum_probs=24.9

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCc
Q psy17467         56 IKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPT   94 (730)
Q Consensus        56 v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eS   94 (730)
                      +.+.||||||......   ...+.+|++++|+|.++...
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~  184 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDD  184 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC-----
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHH
Confidence            6799999999754332   34689999999999876543

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=98.96  E-value=2.6e-09  Score=108.14  Aligned_cols=25  Identities=24%  Similarity=0.129  Sum_probs=22.9

Q ss_pred             CeEEEEecCCCCChHHHHHHHHHHH
Q psy17467        225 MYYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       225 ~~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                      ++++++||++|.|++++++++.+.+
T Consensus       231 ~~~~~~SA~~~~gi~~l~~~i~~~~  255 (262)
T 1yrb_A          231 VRVLYLSAKTREGFEDLETLAYEHY  255 (262)
T ss_dssp             CCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccceEEEecCcccHHHHHHHHHHHh
Confidence            4799999999999999999998776

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.92  E-value=1.8e-09  Score=114.11  Aligned_cols=97  Identities=18%  Similarity=0.154  Sum_probs=76.8

Q ss_pred             chhhhhhhHhhhccccEEEEEeecCCCC-chhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCC
Q psy17467         66 QERFRSITQSYYRSAHALILVYDISCQP-TFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPAL  144 (730)
Q Consensus        66 ~e~~~sl~~~~~r~ADaIILVyDvtd~e-Sfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~  144 (730)
                      ++++..+.+.+++++|++|+|||++++. +++.+..|+..+..                                  .+.
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----------------------------------~~~  111 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----------------------------------FKV  111 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----------------------------------TTC
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----------------------------------CCC
Confidence            5677778888999999999999999986 89988899887643                                  356


Q ss_pred             ceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCC-hHHHHHHHHhc
Q psy17467        145 ATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIP-TEVGEDFAKRH  223 (730)
Q Consensus       145 PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs-~ee~~~lak~l  223 (730)
                      |+++|+||+|+.++..                                                  +. .++..++++..
T Consensus       112 ~~ilV~NK~DL~~~~~--------------------------------------------------v~~~~~~~~~~~~~  141 (302)
T 2yv5_A          112 EPVIVFNKIDLLNEEE--------------------------------------------------KKELERWISIYRDA  141 (302)
T ss_dssp             EEEEEECCGGGCCHHH--------------------------------------------------HHHHHHHHHHHHHT
T ss_pred             CEEEEEEcccCCCccc--------------------------------------------------cHHHHHHHHHHHHC
Confidence            7788889998864221                                                  11 24556667778


Q ss_pred             CCeEEEEecCCCCChHHHHHHHH
Q psy17467        224 DMYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       224 g~~fvEtSAktG~GVeeLFe~Li  246 (730)
                      |++++++||++|.|++++|+.+.
T Consensus       142 g~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          142 GYDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             TCEEEECCTTTCTTHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHhhcc
Confidence            99999999999999999998764

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.85  E-value=2.1e-09  Score=126.57  Aligned_cols=27  Identities=26%  Similarity=0.466  Sum_probs=24.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCC
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVF   32 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f   32 (730)
                      .+-+|+|+|.+++|||||+|++++..+
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~~~   76 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGRDF   76 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence            346899999999999999999999877

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=98.85  E-value=1.9e-08  Score=114.84  Aligned_cols=95  Identities=14%  Similarity=0.107  Sum_probs=67.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcC-------------C-----CCC----CCCCcceeeEEEEEEEeCCeEEEEEEEeCC
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQG-------------V-----FPP----GQGATIGVDFMIKTVEINNERIKLQIWDTA   64 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~-------------~-----f~~----~~~pTig~d~~~~~i~vdg~~v~LqLwDTp   64 (730)
                      .=+|+|+|..++|||||..+++..             .     +..    .....+++......+.+++  +.++|+|||
T Consensus        31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTP  108 (548)
T 3vqt_A           31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDTP  108 (548)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECCC
T ss_pred             cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeCC
Confidence            347999999999999999999621             0     000    0011111122233455666  789999999


Q ss_pred             CchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHH
Q psy17467         65 GQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLR  103 (730)
Q Consensus        65 G~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wle  103 (730)
                      |+.+|..-....++-+|++|+|+|+.+.-.-+...-|..
T Consensus       109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~  147 (548)
T 3vqt_A          109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDV  147 (548)
T ss_dssp             CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHH
Confidence            999999988999999999999999998777766665633

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.80  E-value=1.9e-09  Score=115.71  Aligned_cols=81  Identities=9%  Similarity=-0.095  Sum_probs=44.9

Q ss_pred             CCeEEEEecCCCCChHHHHHHHHHHHHHHHH-----HHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHH
Q psy17467        224 DMYYLETSAKASDNVEKLFMQIAAELMEKLA-----EKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIK  298 (730)
Q Consensus       224 g~~fvEtSAktG~GVeeLFe~Li~~l~e~~~-----~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~  298 (730)
                      +.+++.+||++|.|++++++.|.+.......     .........+...+.+-.-.     ..-++|+...++..+..++
T Consensus       234 ~~~vl~~Sal~g~gi~~L~~~I~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~  308 (337)
T 2qm8_A          234 TPPVVTISGLHGKGLDSLWSRIEDHRSKLTATGEIAGKRREQDVKWMWALVHERLH-----QRLVGSAEVRQATAEAERA  308 (337)
T ss_dssp             CCCEEEEBTTTTBSHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH-----HHHTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhCcchhhHHHHHHHH
Confidence            3568899999999999999999876542211     00011111111111111000     0113455556666677777


Q ss_pred             HHhhcCCCCce
Q psy17467        299 QIVKKFPNIDI  309 (730)
Q Consensus       299 ~~~k~~p~~~~  309 (730)
                      .+.+..||.+.
T Consensus       309 ~~~~~~~p~~~  319 (337)
T 2qm8_A          309 VAGGEHSPAAG  319 (337)
T ss_dssp             HHTTSSCHHHH
T ss_pred             HHcCCCCHHHH
Confidence            77888887654

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.62  E-value=1.3e-08  Score=118.06  Aligned_cols=95  Identities=16%  Similarity=0.170  Sum_probs=65.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc--CCCC------C-----CCCC---cceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ--GVFP------P-----GQGA---TIGVDFMIKTVEINNERIKLQIWDTAGQERFRS   71 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~--~~f~------~-----~~~p---Tig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s   71 (730)
                      -+|+|+|..++|||||..+++.  +...      .     ++.+   .-|++.....+.+..+.+.++|+||||+.+|..
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~   82 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA   82 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence            3689999999999999999863  1110      0     0000   001222222233333447899999999999999


Q ss_pred             hhHhhhccccEEEEEeecCCCCchhhhHHHH
Q psy17467         72 ITQSYYRSAHALILVYDISCQPTFDCLTDWL  102 (730)
Q Consensus        72 l~~~~~r~ADaIILVyDvtd~eSfe~L~~wl  102 (730)
                      -....++-+|++|+|+|+.+.-.-+...-|.
T Consensus        83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~  113 (638)
T 3j25_A           83 EVYRSLSVLDGAILLISAKDGVQAQTRILFH  113 (638)
T ss_dssp             HHHHHHTTCSEEECCEESSCTTCSHHHHHHH
T ss_pred             HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHH
Confidence            8899999999999999999876655544443

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.47  E-value=1.1e-06  Score=102.98  Aligned_cols=100  Identities=14%  Similarity=0.127  Sum_probs=67.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcC--------CCCC--CCC--------CcceeeEEEEEEEeCC-----eEEEEEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQG--------VFPP--GQG--------ATIGVDFMIKTVEINN-----ERIKLQIW   61 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~--------~f~~--~~~--------pTig~d~~~~~i~vdg-----~~v~LqLw   61 (730)
                      +..=+|+|+|..++|||||..+|+..        ....  .+.        ..+++......+.+.+     +.+.++|+
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            34458999999999999999998621        1110  010        1111111223344432     35889999


Q ss_pred             eCCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHH
Q psy17467         62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLRE  104 (730)
Q Consensus        62 DTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wlee  104 (730)
                      ||||+-+|..-....++-+|++|+|+|+.+.-.-+...-|...
T Consensus        91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a  133 (709)
T 4fn5_A           91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQA  133 (709)
T ss_dssp             CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH
T ss_pred             eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHH
Confidence            9999999999889999999999999999987766665545444

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=98.36  E-value=2.6e-07  Score=93.80  Aligned_cols=107  Identities=11%  Similarity=0.002  Sum_probs=65.8

Q ss_pred             CCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCC
Q psy17467         64 AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPA  143 (730)
Q Consensus        64 pG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~  143 (730)
                      +|++.++.+|+.||.++|++|+|+|.+|++-++ .++.+.++......                          .-.-.+
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~e--------------------------e~~L~g  162 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDP--------------------------AFGSSG  162 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCT--------------------------TSSCSC
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcc--------------------------hhhhCC
Confidence            488899999999999999999999999987665 44444333322100                          000156


Q ss_pred             CceEEeccCC-CcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH-
Q psy17467        144 LATALASDKT-DLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK-  221 (730)
Q Consensus       144 ~PVVLVGNK~-DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak-  221 (730)
                      +|++|.+||. |+..                                                    ..+..+..+... 
T Consensus       163 apLLVlANKqqDlp~----------------------------------------------------Ams~~EI~e~L~L  190 (227)
T 3l82_B          163 RPLLVLSCISQGDVK----------------------------------------------------RMPCFYLAHELHL  190 (227)
T ss_dssp             SCEEEEEEESSTTSC----------------------------------------------------BCCHHHHHHHTTG
T ss_pred             CeEEEEeCCCcCccC----------------------------------------------------CCCHHHHHHHcCC
Confidence            7888888885 5531                                                    112222211110 


Q ss_pred             ---hcCCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467        222 ---RHDMYYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       222 ---~lg~~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                         .....+..|||++|+|+.+.++|+.+.+
T Consensus       191 ~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l  221 (227)
T 3l82_B          191 NLLNHPWLVQDTEAETLTGFLNGIEWILEEV  221 (227)
T ss_dssp             GGGCSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred             cCCCCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence               1345689999999999999999998766

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.20  E-value=1.2e-06  Score=92.67  Aligned_cols=109  Identities=12%  Similarity=0.001  Sum_probs=70.5

Q ss_pred             CCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCC
Q psy17467         63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDP  142 (730)
Q Consensus        63 TpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~  142 (730)
                      .+|++..+.+|+.|+.++|++|+|+|.+|++.++ .++.+.++....                      +...    .-.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL----------------------~e~~----~l~  246 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMT----------------------DPAF----GSS  246 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHH----------------------CHHH----HCT
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHh----------------------cchh----hcC
Confidence            4688899999999999999999999999998776 444333332211                      0000    014


Q ss_pred             CCceEEeccC-CCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH
Q psy17467        143 ALATALASDK-TDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK  221 (730)
Q Consensus       143 ~~PVVLVGNK-~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak  221 (730)
                      ++|++|.+|| .|+..                                                    ..+..+..+...
T Consensus       247 ~apLLVfANKkQDlp~----------------------------------------------------Ams~~EI~e~L~  274 (312)
T 3l2o_B          247 GRPLLVLSCISQGDVK----------------------------------------------------RMPCFYLAHELH  274 (312)
T ss_dssp             TCCEEEEEEESSTTSC----------------------------------------------------BCCHHHHHHHTT
T ss_pred             CCeEEEEeCCcccccC----------------------------------------------------CCCHHHHHHHcC
Confidence            6788888886 46631                                                    112222211110


Q ss_pred             ----hcCCeEEEEecCCCCChHHHHHHHHHHHH
Q psy17467        222 ----RHDMYYLETSAKASDNVEKLFMQIAAELM  250 (730)
Q Consensus       222 ----~lg~~fvEtSAktG~GVeeLFe~Li~~l~  250 (730)
                          .....+..|||++|+|+.+.++|+.+.+.
T Consensus       275 L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~  307 (312)
T 3l2o_B          275 LNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  307 (312)
T ss_dssp             GGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred             CccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence                12346899999999999999999998773

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.09  E-value=5.3e-06  Score=89.97  Aligned_cols=96  Identities=18%  Similarity=0.187  Sum_probs=69.2

Q ss_pred             CchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCC
Q psy17467         65 GQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPAL  144 (730)
Q Consensus        65 G~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~  144 (730)
                      ..++|.+..+.+++.+|++|+|+|++++.     ..|..++.+..                                .+.
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--------------------------------~~~   97 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--------------------------------GNN   97 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--------------------------------SSS
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--------------------------------CCC
Confidence            45788999999999999999999998742     44555554432                                256


Q ss_pred             ceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHH----HHHH
Q psy17467        145 ATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVG----EDFA  220 (730)
Q Consensus       145 PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~----~~la  220 (730)
                      |+++|+||+|+.+                                                   +.+..++.    +.++
T Consensus        98 p~ilV~NK~DL~~---------------------------------------------------~~~~~~~~~~~l~~~~  126 (368)
T 3h2y_A           98 KVLLVGNKADLIP---------------------------------------------------KSVKHDKVKHWMRYSA  126 (368)
T ss_dssp             CEEEEEECGGGSC---------------------------------------------------TTSCHHHHHHHHHHHH
T ss_pred             cEEEEEEChhcCC---------------------------------------------------cccCHHHHHHHHHHHH
Confidence            7778888888743                                                   12222333    3346


Q ss_pred             HhcCC---eEEEEecCCCCChHHHHHHHHHH
Q psy17467        221 KRHDM---YYLETSAKASDNVEKLFMQIAAE  248 (730)
Q Consensus       221 k~lg~---~fvEtSAktG~GVeeLFe~Li~~  248 (730)
                      +..|+   .++++||++|.|++++++.+.+.
T Consensus       127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          127 KQLGLKPEDVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             HHTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence            67787   79999999999999999988654

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=97.87  E-value=2.1e-05  Score=85.27  Aligned_cols=97  Identities=15%  Similarity=0.116  Sum_probs=67.9

Q ss_pred             CchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCC
Q psy17467         65 GQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPAL  144 (730)
Q Consensus        65 G~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~  144 (730)
                      .+++|.+..+.+++.++++|+|+|++++.+     .|.+++.+..                                .+.
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l--------------------------------~~~   99 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA--------------------------------ADN   99 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC--------------------------------TTS
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh--------------------------------CCC
Confidence            578899999999999999999999998763     3333333221                                256


Q ss_pred             ceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHH----HHHH
Q psy17467        145 ATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVG----EDFA  220 (730)
Q Consensus       145 PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~----~~la  220 (730)
                      |+++|+||+|+.+.                                                   .+..+..    ..++
T Consensus       100 piilV~NK~DLl~~---------------------------------------------------~~~~~~~~~~l~~~~  128 (369)
T 3ec1_A          100 PILLVGNKADLLPR---------------------------------------------------SVKYPKLLRWMRRMA  128 (369)
T ss_dssp             CEEEEEECGGGSCT---------------------------------------------------TCCHHHHHHHHHHHH
T ss_pred             CEEEEEEChhcCCC---------------------------------------------------ccCHHHHHHHHHHHH
Confidence            77788888887531                                                   1222233    3345


Q ss_pred             HhcCC---eEEEEecCCCCChHHHHHHHHHHH
Q psy17467        221 KRHDM---YYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       221 k~lg~---~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                      +..|.   .++++||++|.|++++++.+.+..
T Consensus       129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            66776   789999999999999999886543

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=97.82  E-value=8.5e-06  Score=88.36  Aligned_cols=78  Identities=17%  Similarity=0.265  Sum_probs=49.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC------CCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhh-------H
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQG------VFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSIT-------Q   74 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~------~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~-------~   74 (730)
                      .+|+++|.+|||||||+|++++.      .......|.++  .....+.+++.   +.++||||......+.       .
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l  237 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTT--LDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL  237 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSS--CEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeE--EeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence            47999999999999999999975      22233334433  33344444432   7899999964322111       1


Q ss_pred             hhh---ccccEEEEEeecC
Q psy17467         75 SYY---RSAHALILVYDIS   90 (730)
Q Consensus        75 ~~~---r~ADaIILVyDvt   90 (730)
                      ..+   +..|++++++|..
T Consensus       238 ~~~~~~~~i~~~~~~l~~~  256 (369)
T 3ec1_A          238 KIITPKREIHPRVYQLNEG  256 (369)
T ss_dssp             HHHSCSSCCCCEEEEECTT
T ss_pred             HHHhcccccCceEEEEcCC
Confidence            122   5678888888763

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.79  E-value=1e-05  Score=91.52  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHH
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFT   28 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl   28 (730)
                      ...|+|+|.+||||||+++++.
T Consensus       101 ~~vI~ivG~~GvGKTTl~~kLA  122 (504)
T 2j37_W          101 QNVIMFVGLQGSGKTTTCSKLA  122 (504)
T ss_dssp             -EEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999998

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=97.70  E-value=2e-05  Score=85.46  Aligned_cols=79  Identities=15%  Similarity=0.279  Sum_probs=46.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC-----CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhh----H----
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVF-----PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSIT----Q----   74 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f-----~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~----~----   74 (730)
                      .+|+++|.+|||||||+|++++...     .....+..|.+.....+.+++.   +.++||||......+.    .    
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  237 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK  237 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence            4799999999999999999987521     1111122222333344444432   7899999974322111    1    


Q ss_pred             hh--hccccEEEEEeec
Q psy17467         75 SY--YRSAHALILVYDI   89 (730)
Q Consensus        75 ~~--~r~ADaIILVyDv   89 (730)
                      .+  ....+.+++++|.
T Consensus       238 ~~~~~~~i~~~~~~l~~  254 (368)
T 3h2y_A          238 LITPTKEIKPMVFQLNE  254 (368)
T ss_dssp             HHSCSSCCCCEEEEECT
T ss_pred             HhccccccCceEEEEcC
Confidence            11  2456777777765

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.64  E-value=1.7e-05  Score=82.18  Aligned_cols=57  Identities=25%  Similarity=0.364  Sum_probs=36.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER   68 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~   68 (730)
                      ++++++|.+|||||||+|++.+...... .++.|.+.....+..+.   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence            5899999999999999999998765322 23334333223333332   479999999753

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=97.63  E-value=3.5e-05  Score=80.57  Aligned_cols=57  Identities=23%  Similarity=0.397  Sum_probs=35.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCch
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE   67 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e   67 (730)
                      ..++|+++|.||||||||+|++++... .....|.++  .....+..+.   .+.+|||||..
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGIT--TSQQWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCee--eeeEEEEeCC---CEEEEECcCcC
Confidence            458999999999999999999998763 233333332  2222333332   48899999974

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=97.61  E-value=0.00027  Score=73.93  Aligned_cols=101  Identities=12%  Similarity=0.077  Sum_probs=65.6

Q ss_pred             EEeCCCch-hhhhhhHhhhccccEEEEEeecCCCCchhh--hHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcc
Q psy17467         60 IWDTAGQE-RFRSITQSYYRSAHALILVYDISCQPTFDC--LTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGL  136 (730)
Q Consensus        60 LwDTpG~e-~~~sl~~~~~r~ADaIILVyDvtd~eSfe~--L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~  136 (730)
                      +-+.||+. .........+..+|+++.|+|+.++.+..+  +.+|+                                  
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l----------------------------------   48 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL----------------------------------   48 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC----------------------------------
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH----------------------------------
Confidence            44567764 333445567899999999999999988764  22221                                  


Q ss_pred             cccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHH
Q psy17467        137 LCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVG  216 (730)
Q Consensus       137 ~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~  216 (730)
                           .+.|+++|.||+|+.+.+.                                                    .+..
T Consensus        49 -----~~kp~ilVlNK~DL~~~~~----------------------------------------------------~~~~   71 (282)
T 1puj_A           49 -----KNKPRIMLLNKADKADAAV----------------------------------------------------TQQW   71 (282)
T ss_dssp             -----SSSCEEEEEECGGGSCHHH----------------------------------------------------HHHH
T ss_pred             -----CCCCEEEEEECcccCCHHH----------------------------------------------------HHHH
Confidence                 2456777778888753210                                                    1122


Q ss_pred             HHHHHhcCCeEEEEecCCCCChHHHHHHHHHHHHH
Q psy17467        217 EDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME  251 (730)
Q Consensus       217 ~~lak~lg~~fvEtSAktG~GVeeLFe~Li~~l~e  251 (730)
                      .++.+..|++++++||++|.|++++++.+.+.+..
T Consensus        72 ~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~  106 (282)
T 1puj_A           72 KEHFENQGIRSLSINSVNGQGLNQIVPASKEILQE  106 (282)
T ss_dssp             HHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             HHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence            33344567899999999999999999988777644

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.47  E-value=0.0005  Score=76.24  Aligned_cols=57  Identities=28%  Similarity=0.479  Sum_probs=34.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCC----CCcceeeEEEEEEEe--CCeEEEEEEEeCCCc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQ----GATIGVDFMIKTVEI--NNERIKLQIWDTAGQ   66 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~----~pTig~d~~~~~i~v--dg~~v~LqLwDTpG~   66 (730)
                      ++++|+|++|+|||||++.+.+..+....    .+...  .....+.+  .+-...+.++|++|.
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~--~~~i~~v~Q~~~l~~~ltv~D~~~~  105 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQ--LQSNTYDLQESNVRLKLTIVSTVGF  105 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCE--EEEEEEEEEC--CEEEEEEEEEECC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccce--EeeEEEEeecCccccccchhhhhhh
Confidence            67999999999999999999986542211    12221  21222222  222346889999874

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.36  E-value=0.00051  Score=75.88  Aligned_cols=23  Identities=22%  Similarity=0.504  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      ..++|+|++|||||||+|.+.+-
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl   92 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGI   92 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCcHHHHHHHHhCC
Confidence            46999999999999999999984

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.35  E-value=0.00044  Score=71.78  Aligned_cols=24  Identities=33%  Similarity=0.701  Sum_probs=22.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcC
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++++++|++|+|||||++.+++.
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~   25 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKS   25 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            589999999999999999999874

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=97.23  E-value=0.00019  Score=82.68  Aligned_cols=61  Identities=21%  Similarity=0.194  Sum_probs=38.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCC-----CCcceeeEEEEEEEe-CCeEEEEEEEeCCCchh
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQ-----GATIGVDFMIKTVEI-NNERIKLQIWDTAGQER   68 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~-----~pTig~d~~~~~i~v-dg~~v~LqLwDTpG~e~   68 (730)
                      ..++|+|+|.||||||||+|++++.......     ..|.|.  ......+ ......+.|+||||...
T Consensus        37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi--~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGI--WMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSE--EEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEE--EEeecccccCCCceEEEecCCCcCc
Confidence            4578999999999999999999987632111     112221  1111111 12235689999999754

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.78  E-value=0.0011  Score=73.91  Aligned_cols=21  Identities=33%  Similarity=0.529  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFT   28 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl   28 (730)
                      .-|+++|.+||||||++..+.
T Consensus       101 ~vIlivG~~G~GKTTt~~kLA  121 (443)
T 3dm5_A          101 TILLMVGIQGSGKTTTVAKLA  121 (443)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHH
Confidence            568999999999999998886

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.74  E-value=0.0011  Score=73.47  Aligned_cols=22  Identities=32%  Similarity=0.508  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      ..|+|+|.+||||||+++.+..
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~  121 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLAR  121 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998875

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=96.74  E-value=8.9e-05  Score=82.54  Aligned_cols=100  Identities=14%  Similarity=0.106  Sum_probs=61.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh--hhhhh--------Hhh
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER--FRSIT--------QSY   76 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~--~~sl~--------~~~   76 (730)
                      .++|+++|.+|+||||+.++|...-... ..++.+...........+......+||..|.+.  ....+        ..+
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~  117 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF  117 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999987532111 112221110000001112223356899998732  23332        456


Q ss_pred             hccccEEEEEeecCCCCchhhhHHHHHHHHHH
Q psy17467         77 YRSAHALILVYDISCQPTFDCLTDWLREIEEY  108 (730)
Q Consensus        77 ~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~  108 (730)
                      +..+++.++|+|.++. +++....|++.+...
T Consensus       118 l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~  148 (469)
T 1bif_A          118 LSEEGGHVAVFDATNT-TRERRAMIFNFGEQN  148 (469)
T ss_dssp             HHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred             HHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence            6678899999999998 566767787776553

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.46  E-value=0.0049  Score=63.65  Aligned_cols=26  Identities=12%  Similarity=0.096  Sum_probs=21.2

Q ss_pred             hhHhhhccccEEEEEeecCCCCchhh
Q psy17467         72 ITQSYYRSAHALILVYDISCQPTFDC   97 (730)
Q Consensus        72 l~~~~~r~ADaIILVyDvtd~eSfe~   97 (730)
                      .....+.++|++|.|+|+.++.+..+
T Consensus        14 ~~~~~l~~~D~vl~VvDar~P~~~~~   39 (262)
T 3cnl_A           14 QIKDLLRLVNTVVEVRDARAPFATSA   39 (262)
T ss_dssp             HHHHHHTTCSEEEEEEETTSTTTTSC
T ss_pred             HHHHHHhhCCEEEEEeeCCCCCcCcC
Confidence            44567889999999999999877654

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=95.96  E-value=0.0025  Score=70.82  Aligned_cols=21  Identities=38%  Similarity=0.662  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFT   28 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl   28 (730)
                      --|+++|.+||||||++..+.
T Consensus        98 ~vI~lvG~~GsGKTTt~~kLA  118 (433)
T 3kl4_A           98 FIIMLVGVQGSGKTTTAGKLA  118 (433)
T ss_dssp             EEEEECCCTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            458999999999999999886

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=95.59  E-value=0.015  Score=61.12  Aligned_cols=21  Identities=33%  Similarity=0.654  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFT   28 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl   28 (730)
                      --|+++|.+||||||++..+.
T Consensus        99 ~vi~i~G~~G~GKTT~~~~la  119 (297)
T 1j8m_F           99 YVIMLVGVQGTGKTTTAGKLA  119 (297)
T ss_dssp             EEEEEECSSCSSTTHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            357889999999999999886

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=95.41  E-value=0.037  Score=63.71  Aligned_cols=24  Identities=13%  Similarity=0.443  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVF   32 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f   32 (730)
                      .|+|+|++|+|||||++.+.+-..
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~~   70 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVAL   70 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC-
T ss_pred             eEEEECCCCChHHHHHHHHhCCCC
Confidence            489999999999999999998643

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=95.03  E-value=0.017  Score=64.45  Aligned_cols=23  Identities=22%  Similarity=0.313  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHc
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      ..=|+|+|.+++|||+|+|++++
T Consensus        67 v~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           67 VVAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCcHHHHHHHHhh
Confidence            34589999999999999999985

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=94.78  E-value=0.014  Score=61.89  Aligned_cols=26  Identities=8%  Similarity=0.071  Sum_probs=19.8

Q ss_pred             hhhHhhhccccEEEEEeecCCCCchh
Q psy17467         71 SITQSYYRSAHALILVYDISCQPTFD   96 (730)
Q Consensus        71 sl~~~~~r~ADaIILVyDvtd~eSfe   96 (730)
                      .+.+..+.++|.+++|+|+.+|..-.
T Consensus        78 ~l~R~~~anvD~v~~V~~~~~p~~~~  103 (307)
T 1t9h_A           78 ELIRPPICNVDQAVLVFSAVQPSFST  103 (307)
T ss_dssp             EETTTTEECCCEEEEEEESTTTTCCH
T ss_pred             hhhHHHHHhCCEEEEEEeCCCCCCCH
Confidence            34445688999999999999765443

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=94.51  E-value=0.1  Score=56.45  Aligned_cols=24  Identities=17%  Similarity=0.140  Sum_probs=20.2

Q ss_pred             HhcCCeEEEEecCCCCChHHHHHH
Q psy17467        221 KRHDMYYLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       221 k~lg~~fvEtSAktG~GVeeLFe~  244 (730)
                      ...|.+++.+||++|.|++++...
T Consensus       189 ~~~G~~v~~~Sa~~~~gl~~L~~~  212 (358)
T 2rcn_A          189 RNIGYRVLMVSSHTQDGLKPLEEA  212 (358)
T ss_dssp             HTTTCCEEECBTTTTBTHHHHHHH
T ss_pred             HhCCCcEEEEecCCCcCHHHHHHh
Confidence            456889999999999999988654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=93.64  E-value=0.034  Score=53.87  Aligned_cols=22  Identities=41%  Similarity=0.853  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      +++++|++|+|||||++.+.+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998764

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=93.43  E-value=0.036  Score=53.04  Aligned_cols=22  Identities=27%  Similarity=0.545  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      -++|+|++|||||||++.+.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999999864

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=93.15  E-value=0.042  Score=53.68  Aligned_cols=21  Identities=43%  Similarity=0.749  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .++|+|++|+|||||++.+.+
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999999976

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=92.88  E-value=0.05  Score=52.24  Aligned_cols=22  Identities=32%  Similarity=0.579  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      -++++|++|||||||++.+.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            3899999999999999999864

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=92.77  E-value=0.065  Score=50.90  Aligned_cols=23  Identities=22%  Similarity=0.400  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      -.|+++|++|+|||||++.+.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            35899999999999999999864

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=92.34  E-value=0.034  Score=58.93  Aligned_cols=23  Identities=30%  Similarity=0.641  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      .++++|++|||||||+|.+.+..
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHhcccc
Confidence            58999999999999999998653

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=92.33  E-value=0.062  Score=52.49  Aligned_cols=22  Identities=41%  Similarity=0.676  Sum_probs=19.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      ++|+|++|+|||||++.+.+-.
T Consensus        23 ~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           23 VVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhhC
Confidence            7899999999999999998643

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=92.28  E-value=0.058  Score=51.30  Aligned_cols=19  Identities=37%  Similarity=0.774  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q psy17467         10 VVLVGNAGVGKTCLVRRFT   28 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl   28 (730)
                      ++++|++|+|||||++.+.
T Consensus        12 ~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           12 VVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEECCTTSCHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHc
Confidence            7899999999999999854

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=91.97  E-value=0.073  Score=53.33  Aligned_cols=23  Identities=17%  Similarity=0.394  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      -++|+|++|||||||++.+.+..
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            38999999999999999998753

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=91.94  E-value=0.072  Score=52.82  Aligned_cols=21  Identities=33%  Similarity=0.732  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~   30 (730)
                      ++|+|++|+|||||++.+.+-
T Consensus        26 ~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           26 LVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            899999999999999999874

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=91.79  E-value=0.08  Score=51.87  Aligned_cols=22  Identities=32%  Similarity=0.478  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      -|+|+|++|||||||++.+...
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            3899999999999999999865

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=91.76  E-value=0.08  Score=52.65  Aligned_cols=22  Identities=27%  Similarity=0.607  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      -|+|+|++|||||||++++...
T Consensus        21 ~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           21 TLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            4899999999999999999854

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=91.70  E-value=0.097  Score=48.85  Aligned_cols=22  Identities=36%  Similarity=0.665  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .|+++|.+|+||||+.+.+.+.
T Consensus         6 ~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            6 NIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999998753

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=91.49  E-value=0.089  Score=51.41  Aligned_cols=24  Identities=29%  Similarity=0.389  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcC
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      -..|+|+|++|+|||||++.+.+.
T Consensus        22 g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           22 RQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            356999999999999999988753

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=91.46  E-value=0.097  Score=48.04  Aligned_cols=19  Identities=21%  Similarity=0.513  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q psy17467          9 KVVLVGNAGVGKTCLVRRF   27 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrL   27 (730)
                      -|+|.|.+||||||+.+.+
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5899999999999999999

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=91.37  E-value=0.095  Score=50.22  Aligned_cols=23  Identities=35%  Similarity=0.557  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      .|+|+|++||||||+++.+.+..
T Consensus         8 ~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            8 LIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            58999999999999999998653

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=91.18  E-value=0.1  Score=48.31  Aligned_cols=21  Identities=14%  Similarity=0.281  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .|+|.|.+||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=91.15  E-value=0.11  Score=51.15  Aligned_cols=21  Identities=29%  Similarity=0.675  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~   30 (730)
                      |+|+|++|||||||+++++..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999999854

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=91.07  E-value=0.11  Score=50.43  Aligned_cols=22  Identities=32%  Similarity=0.638  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      -|+|+|++|||||||.+++...
T Consensus        14 ~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           14 PLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            3899999999999999999753

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=91.07  E-value=0.1  Score=56.46  Aligned_cols=24  Identities=25%  Similarity=0.391  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVF   32 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f   32 (730)
                      .++++|++|||||||+|.+.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            489999999999999999997543

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=90.93  E-value=0.13  Score=49.85  Aligned_cols=22  Identities=27%  Similarity=0.546  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      ..|+|+|++|+|||||++.+.+
T Consensus         7 ~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            7 FVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999876

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=90.93  E-value=0.12  Score=48.18  Aligned_cols=22  Identities=27%  Similarity=0.508  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .-|+|.|.|||||||+.+++..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3589999999999999999975

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=90.92  E-value=0.11  Score=49.51  Aligned_cols=21  Identities=33%  Similarity=0.637  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      -++++|++|+|||||++.+.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            378999999999999999975

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=90.73  E-value=0.13  Score=51.41  Aligned_cols=21  Identities=29%  Similarity=0.670  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFT   28 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl   28 (730)
                      -.|+|+|++|+|||||++.+.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            359999999999999999998

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=90.55  E-value=0.12  Score=52.33  Aligned_cols=21  Identities=24%  Similarity=0.408  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~   30 (730)
                      ++|+|++|+|||||++.+.+-
T Consensus        34 ~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           34 VSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             EEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEECCCCCcHHHHHHHHhcC
Confidence            799999999999999998764

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=90.55  E-value=0.13  Score=49.87  Aligned_cols=21  Identities=33%  Similarity=0.601  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      -|+|+|.+|+|||||++.+.+
T Consensus        31 ~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           31 HVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999875

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=90.45  E-value=0.12  Score=51.68  Aligned_cols=21  Identities=29%  Similarity=0.455  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~   30 (730)
                      ++++|++|+|||||++.+.+-
T Consensus        33 ~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           33 VSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             EEEEECTTSCHHHHHHHHTTS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999998764

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=90.38  E-value=0.13  Score=48.94  Aligned_cols=23  Identities=48%  Similarity=0.713  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      -++++|+.|+|||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            38999999999999999998754

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=90.32  E-value=0.14  Score=53.36  Aligned_cols=23  Identities=30%  Similarity=0.596  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      -++++|++|||||||+|.+.+..
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTC
T ss_pred             eEEEECCCCCcHHHHHHHhcccc
Confidence            47899999999999999998754

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=90.19  E-value=0.16  Score=47.83  Aligned_cols=21  Identities=24%  Similarity=0.509  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .|+|.|.+||||||+.+.+..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=90.16  E-value=0.15  Score=49.56  Aligned_cols=21  Identities=29%  Similarity=0.544  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999854

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=90.13  E-value=0.15  Score=51.87  Aligned_cols=22  Identities=27%  Similarity=0.448  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++++|++|+|||||++.+.+-
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999875

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=90.12  E-value=0.14  Score=49.72  Aligned_cols=21  Identities=29%  Similarity=0.363  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~   30 (730)
                      ++|+|++|+|||||++.+.+.
T Consensus        28 ~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           28 TEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            799999999999999999864

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=89.98  E-value=0.16  Score=49.49  Aligned_cols=21  Identities=33%  Similarity=0.529  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999864

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=89.95  E-value=0.16  Score=48.86  Aligned_cols=22  Identities=32%  Similarity=0.613  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .+|+|+|.+||||||+.+.+.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3699999999999999999986

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=89.93  E-value=0.14  Score=50.23  Aligned_cols=21  Identities=43%  Similarity=0.749  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      +++++|++|+|||||++.+.+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g   23 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHh
Confidence            489999999999999998875

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=89.92  E-value=0.17  Score=48.14  Aligned_cols=21  Identities=24%  Similarity=0.629  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .|+|.|.+||||||+.+.+..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            589999999999999998864

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=89.79  E-value=0.16  Score=49.02  Aligned_cols=21  Identities=24%  Similarity=0.542  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .|+|+|.+|+||||+.+.|..
T Consensus        20 ~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           20 SIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             CEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999999864

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=89.79  E-value=0.15  Score=52.47  Aligned_cols=34  Identities=21%  Similarity=0.457  Sum_probs=25.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE   54 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~   54 (730)
                      ++|+|++|+|||||++.+.+-.     .|+.|      .+.++|.
T Consensus        35 ~~liG~nGsGKSTLlk~l~Gl~-----~p~~G------~i~~~g~   68 (262)
T 1b0u_A           35 ISIIGSSGSGKSTFLRCINFLE-----KPSEG------AIIVNGQ   68 (262)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS-----CCSEE------EEEETTE
T ss_pred             EEEECCCCCCHHHHHHHHhcCC-----CCCCc------EEEECCE
Confidence            7899999999999999998643     23334      5666774

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=89.77  E-value=0.16  Score=47.59  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      -.|+++|.+|+||||+.+.+.+
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            3589999999999999999864

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=89.67  E-value=0.15  Score=51.53  Aligned_cols=22  Identities=32%  Similarity=0.557  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++|+|++|+|||||++.+.+-
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4799999999999999999764

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=89.59  E-value=0.17  Score=47.37  Aligned_cols=21  Identities=29%  Similarity=0.563  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      -|++.|.+||||||+.+.+..
T Consensus         5 ~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999875

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=89.57  E-value=0.15  Score=52.05  Aligned_cols=22  Identities=27%  Similarity=0.463  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      -++++|++|+|||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999864

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=89.56  E-value=0.16  Score=53.09  Aligned_cols=22  Identities=41%  Similarity=0.782  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      -++++|++|||||||+|.+. ..
T Consensus       167 i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-SC
T ss_pred             EEEEECCCCCCHHHHHHHHH-Hh
Confidence            47999999999999999998 43

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=89.55  E-value=0.16  Score=50.81  Aligned_cols=21  Identities=33%  Similarity=0.555  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~   30 (730)
                      ++|+|++|+|||||++.+.+-
T Consensus        38 ~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           38 VNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             EEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999999864

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=89.46  E-value=0.19  Score=48.58  Aligned_cols=21  Identities=38%  Similarity=0.711  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .|+++|.+||||||+.+.+..
T Consensus        27 ~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           27 RIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            689999999999999999874

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=89.46  E-value=0.17  Score=51.14  Aligned_cols=22  Identities=18%  Similarity=0.347  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++|+|++|+|||||++.+.+-
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4799999999999999999864

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=89.40  E-value=0.14  Score=48.39  Aligned_cols=22  Identities=36%  Similarity=0.530  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++++|++|+|||+|++.+.+.
T Consensus        40 ~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           40 GLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             EEEECCSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988753

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=89.38  E-value=0.18  Score=49.65  Aligned_cols=23  Identities=35%  Similarity=0.664  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHc
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      ...|+|.|.+||||||+.+.+..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999874

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=89.33  E-value=0.17  Score=52.68  Aligned_cols=34  Identities=24%  Similarity=0.472  Sum_probs=26.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE   54 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~   54 (730)
                      ++|+|++|+|||||++.+.+-.     .|+.      ..+.++|.
T Consensus        37 ~~iiGpnGsGKSTLl~~l~Gl~-----~p~~------G~I~~~G~   70 (275)
T 3gfo_A           37 TAILGGNGVGKSTLFQNFNGIL-----KPSS------GRILFDNK   70 (275)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS-----CCSE------EEEEETTE
T ss_pred             EEEECCCCCCHHHHHHHHHcCC-----CCCC------eEEEECCE
Confidence            7999999999999999998643     2333      36677774

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=89.32  E-value=0.17  Score=50.84  Aligned_cols=22  Identities=27%  Similarity=0.454  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++|+|++|+|||||++.+.+-
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999864

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=89.27  E-value=0.13  Score=50.99  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=14.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHH-cC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFT-QG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl-~~   30 (730)
                      -++|+|++|||||||++.+. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            38999999999999999998 54

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=89.26  E-value=0.18  Score=51.32  Aligned_cols=22  Identities=27%  Similarity=0.463  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++|+|++|+|||||++.+.+-
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4799999999999999999864

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=89.25  E-value=0.21  Score=47.01  Aligned_cols=22  Identities=32%  Similarity=0.323  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      ..|+|.|.+||||||+.+.+..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999864

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=89.24  E-value=0.19  Score=51.22  Aligned_cols=22  Identities=27%  Similarity=0.419  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++|+|++|+|||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999874

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=89.22  E-value=0.17  Score=51.18  Aligned_cols=22  Identities=32%  Similarity=0.437  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++++|++|+|||||++.+.+-
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999864

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=89.17  E-value=0.18  Score=52.08  Aligned_cols=22  Identities=36%  Similarity=0.635  Sum_probs=19.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      ++++|++|+|||||++.+.+-.
T Consensus        40 ~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           40 VAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCC
Confidence            7899999999999999998743

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=89.14  E-value=0.2  Score=48.81  Aligned_cols=22  Identities=23%  Similarity=0.444  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      ..|+|+|.+|+||||+.+.+.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999865

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=89.13  E-value=0.38  Score=52.03  Aligned_cols=35  Identities=20%  Similarity=0.377  Sum_probs=27.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeE
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNER   55 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~   55 (730)
                      ++++|++|||||||++.+.+-..     |+.      ..+.++|..
T Consensus        33 ~~llGpsGsGKSTLLr~iaGl~~-----p~~------G~I~i~G~~   67 (359)
T 3fvq_A           33 LFIIGASGCGKTTLLRCLAGFEQ-----PDS------GEISLSGKT   67 (359)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSSC-----CSE------EEEEETTEE
T ss_pred             EEEECCCCchHHHHHHHHhcCCC-----CCC------cEEEECCEE
Confidence            78999999999999999987542     333      367778854

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=89.10  E-value=0.19  Score=51.69  Aligned_cols=22  Identities=23%  Similarity=0.386  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++|+|++|+|||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999874

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=89.09  E-value=0.19  Score=47.52  Aligned_cols=22  Identities=23%  Similarity=0.463  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      ..|+|.|.+||||||+.+.+..
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4599999999999999999864

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=89.05  E-value=0.18  Score=52.04  Aligned_cols=35  Identities=26%  Similarity=0.382  Sum_probs=26.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE   54 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~   54 (730)
                      .++|+|++|+|||||++.+.+-.     .|+.|      .+.++|.
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~-----~p~~G------~I~~~g~   86 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE-----DFDEG------EIIIDGI   86 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS-----CCSEE------EEEETTE
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC-----CCCCc------EEEECCE
Confidence            37899999999999999988643     23333      5666773

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=89.00  E-value=0.21  Score=46.13  Aligned_cols=21  Identities=48%  Similarity=0.809  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .+++.|++|+|||+|++.+..
T Consensus        45 ~~ll~G~~G~GKT~l~~~~~~   65 (195)
T 1jbk_A           45 NPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=88.99  E-value=0.18  Score=51.51  Aligned_cols=22  Identities=36%  Similarity=0.540  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++++|++|+|||||++.+.+-
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            3789999999999999999864

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=88.93  E-value=0.16  Score=50.50  Aligned_cols=22  Identities=36%  Similarity=0.318  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++++|++|+|||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999999875

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=88.88  E-value=0.2  Score=48.49  Aligned_cols=22  Identities=27%  Similarity=0.416  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      --|+|+|++|+|||||.+.+.+
T Consensus        26 ~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           26 CVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999998865

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=88.85  E-value=0.19  Score=51.61  Aligned_cols=22  Identities=32%  Similarity=0.404  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      -++|+|++|+|||||++.+.+-
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999999864

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=88.81  E-value=0.25  Score=47.62  Aligned_cols=22  Identities=41%  Similarity=0.638  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      +.|+++|.+|+||||+.+.+.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999976

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=88.78  E-value=0.26  Score=46.46  Aligned_cols=22  Identities=32%  Similarity=0.554  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      ..|+++|.+||||||+.+.+..
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999864

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=88.74  E-value=0.19  Score=51.93  Aligned_cols=22  Identities=27%  Similarity=0.380  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++|+|++|+|||||++.+.+-
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3799999999999999999864

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=88.72  E-value=0.21  Score=48.33  Aligned_cols=22  Identities=23%  Similarity=0.474  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      -++|+|.+|+|||||+++++..
T Consensus         8 ~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            8 LLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHh
Confidence            4899999999999999999864

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=88.62  E-value=0.21  Score=51.21  Aligned_cols=22  Identities=27%  Similarity=0.489  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++|+|++|+|||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            4799999999999999999864

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=88.53  E-value=0.21  Score=51.31  Aligned_cols=21  Identities=19%  Similarity=0.480  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .++|+|++|+|||||++.+.+
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHH
Confidence            489999999999999999876

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=88.47  E-value=0.24  Score=46.72  Aligned_cols=22  Identities=27%  Similarity=0.510  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      -.|+++|.+||||||+.+.+..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999864

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=88.46  E-value=0.22  Score=51.74  Aligned_cols=22  Identities=36%  Similarity=0.462  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++|+|++|+|||||++.+.+-
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            3799999999999999999864

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=88.35  E-value=0.27  Score=47.05  Aligned_cols=22  Identities=18%  Similarity=0.318  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      ..|+|.|.+||||||+.+.+..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            4699999999999999999864

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=88.35  E-value=0.21  Score=51.07  Aligned_cols=22  Identities=23%  Similarity=0.400  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++++|++|+|||||++.+.+-
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999864

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=88.33  E-value=0.25  Score=48.19  Aligned_cols=21  Identities=19%  Similarity=0.401  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999864

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=88.32  E-value=0.23  Score=52.62  Aligned_cols=22  Identities=18%  Similarity=0.342  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++|+|++|+|||||++.+.+-
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhh
Confidence            5899999999999999998763

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=88.30  E-value=0.19  Score=53.68  Aligned_cols=24  Identities=25%  Similarity=0.430  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcC
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .-+++|+|++|+|||||++.+.+-
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999999864

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=88.28  E-value=0.21  Score=51.31  Aligned_cols=22  Identities=27%  Similarity=0.460  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++++|++|+|||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            3789999999999999998764

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=87.85  E-value=0.37  Score=45.25  Aligned_cols=28  Identities=29%  Similarity=0.357  Sum_probs=22.0

Q ss_pred             CCCCcceeEEEEEcCCCCCHHHHHHHHHc
Q psy17467          1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      |+.... ..|+|.|.+||||||+.+.|..
T Consensus         1 m~~~~~-~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            1 MEKSKP-NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCCC-EEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCcC-cEEEEECCCCCCHHHHHHHHHH
Confidence            444332 4699999999999999999864

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=87.77  E-value=0.3  Score=46.99  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      ..|+|.|.+||||||+.+.|..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A           10 ALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999874

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=87.73  E-value=0.26  Score=47.58  Aligned_cols=21  Identities=33%  Similarity=0.593  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~   30 (730)
                      ++|+|++|+|||||+..+...
T Consensus        26 ~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           26 IALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHH
Confidence            789999999999999998843

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=87.70  E-value=0.25  Score=52.12  Aligned_cols=24  Identities=25%  Similarity=0.355  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcC
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      -.-|+|+|++|+|||||++.+.+-
T Consensus        90 g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           90 PFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEEECCCCchHHHHHHHHHhh
Confidence            346899999999999999988763

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=87.69  E-value=0.31  Score=45.79  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      ..|+|.|.+||||||+.+.+..
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998864

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=87.61  E-value=0.65  Score=51.86  Aligned_cols=62  Identities=18%  Similarity=0.235  Sum_probs=38.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHH------------------cCCCCCC---CCCcceeeEEEEEE--Ee-CCeEEEEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFT------------------QGVFPPG---QGATIGVDFMIKTV--EI-NNERIKLQIW   61 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl------------------~~~f~~~---~~pTig~d~~~~~i--~v-dg~~v~LqLw   61 (730)
                      ...=|+|+|..++|||+|+|.++                  ...|...   ...|.|+-.....+  .. ++..+.+-++
T Consensus        66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll  145 (457)
T 4ido_A           66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM  145 (457)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred             ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence            33446799999999999999554                  1234321   22344533222111  11 5667889999


Q ss_pred             eCCCch
Q psy17467         62 DTAGQE   67 (730)
Q Consensus        62 DTpG~e   67 (730)
                      ||.|..
T Consensus       146 DTEG~~  151 (457)
T 4ido_A          146 DTQGTF  151 (457)
T ss_dssp             EECCBT
T ss_pred             eccCCC
Confidence            999864

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=87.58  E-value=0.27  Score=50.66  Aligned_cols=22  Identities=41%  Similarity=0.668  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++++|++|+|||||++.+.+-
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999864

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=87.28  E-value=0.43  Score=46.09  Aligned_cols=24  Identities=25%  Similarity=0.426  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcC
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      ...|+|+|.+|+||||+.+.+.+.
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            356999999999999999999863

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=87.26  E-value=0.32  Score=46.83  Aligned_cols=23  Identities=26%  Similarity=0.549  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHc
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      ...|+|.|.+||||||+.+.|..
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=87.26  E-value=0.27  Score=46.20  Aligned_cols=21  Identities=33%  Similarity=0.697  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      +|+|+|.+|+||||+.+.+..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            599999999999999999864

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=87.24  E-value=0.31  Score=47.64  Aligned_cols=22  Identities=27%  Similarity=0.581  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      ..|+|+|.+||||||+.+.+..
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=87.09  E-value=0.35  Score=44.80  Aligned_cols=21  Identities=19%  Similarity=0.374  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999864

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=87.00  E-value=0.34  Score=46.28  Aligned_cols=23  Identities=22%  Similarity=0.215  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      ..|+|.|.+||||||+.+.|...
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHH
Confidence            46999999999999999999753

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=86.94  E-value=0.34  Score=48.07  Aligned_cols=21  Identities=29%  Similarity=0.600  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .|+++|+|||||+|...++..
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999874

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=86.90  E-value=0.3  Score=48.90  Aligned_cols=22  Identities=18%  Similarity=0.462  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .-|+|+|++|+|||||++.+.+
T Consensus        26 ~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           26 FLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999875

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=86.89  E-value=0.31  Score=48.71  Aligned_cols=21  Identities=52%  Similarity=0.741  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~   30 (730)
                      ++++|++|+|||+|++.+.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999999864

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=86.83  E-value=0.32  Score=46.01  Aligned_cols=22  Identities=27%  Similarity=0.448  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      ..|+|.|.+||||||+.+.|..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999864

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=86.82  E-value=0.31  Score=51.01  Aligned_cols=22  Identities=27%  Similarity=0.454  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++|+|++|+|||||++.+.+-
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4799999999999999998764

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=86.82  E-value=0.32  Score=45.83  Aligned_cols=21  Identities=38%  Similarity=0.722  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .|++.|.+|+||||+.+.+..
T Consensus        13 ~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           13 NILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEeCCCCCHHHHHHHHHH
Confidence            589999999999999999863

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=86.77  E-value=0.18  Score=48.73  Aligned_cols=22  Identities=32%  Similarity=0.484  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++|+|.+|+|||||++.+.+-
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998764

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=86.66  E-value=0.35  Score=47.75  Aligned_cols=21  Identities=19%  Similarity=0.352  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .|+|.|.+||||||+.+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=86.64  E-value=0.16  Score=48.97  Aligned_cols=21  Identities=29%  Similarity=0.555  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      -|+|.|.+||||||+++.+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999864

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=86.56  E-value=0.39  Score=48.28  Aligned_cols=23  Identities=17%  Similarity=0.274  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHc
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      ..+|+|.|.+||||||+.++|..
T Consensus        29 ~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           29 DGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999964

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=86.56  E-value=0.37  Score=45.35  Aligned_cols=21  Identities=24%  Similarity=0.442  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .|++.|.+||||||+.+.+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999865

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=86.52  E-value=0.37  Score=46.02  Aligned_cols=23  Identities=22%  Similarity=0.553  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      ..|+++|.+||||||+.+.|...
T Consensus        11 ~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           11 INILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            46999999999999999998753

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=86.36  E-value=0.38  Score=45.61  Aligned_cols=22  Identities=18%  Similarity=0.456  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      ..|+|.|.+||||||+.+.+..
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998864

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=86.33  E-value=0.35  Score=46.50  Aligned_cols=22  Identities=18%  Similarity=0.209  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      ..|+|.|.+||||||+.+.|..
T Consensus        11 ~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           11 KFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            5699999999999999999864

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=86.27  E-value=0.33  Score=51.10  Aligned_cols=22  Identities=36%  Similarity=0.560  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      -|+|+|++||||||+++.+.+-
T Consensus       104 vi~lvG~nGsGKTTll~~Lagl  125 (304)
T 1rj9_A          104 VVLVVGVNGVGKTTTIAKLGRY  125 (304)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            5899999999999999998753

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=86.19  E-value=0.3  Score=45.09  Aligned_cols=22  Identities=36%  Similarity=0.652  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      -.+++.|++|+|||+|+..+..
T Consensus        44 ~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999988864

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=86.19  E-value=0.37  Score=45.77  Aligned_cols=22  Identities=36%  Similarity=0.551  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      ..|+++|.+|+||||+.+.+..
T Consensus        14 ~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           14 IVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4589999999999999998864

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=86.12  E-value=0.36  Score=52.16  Aligned_cols=34  Identities=35%  Similarity=0.400  Sum_probs=26.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE   54 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~   54 (730)
                      ++++|++|+|||||++.+.+-..     |+.|      .+.++|.
T Consensus        44 ~~llGpnGsGKSTLLr~iaGl~~-----p~~G------~I~i~g~   77 (355)
T 1z47_A           44 VGLLGPSGSGKTTILRLIAGLER-----PTKG------DVWIGGK   77 (355)
T ss_dssp             EEEECSTTSSHHHHHHHHHTSSC-----CSEE------EEEETTE
T ss_pred             EEEECCCCCcHHHHHHHHhCCCC-----CCcc------EEEECCE
Confidence            78999999999999999987532     3333      5667774

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=85.99  E-value=0.36  Score=52.13  Aligned_cols=34  Identities=26%  Similarity=0.368  Sum_probs=26.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE   54 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~   54 (730)
                      ++++|++|+|||||++.+.+-.     .|+.|      .+.++|.
T Consensus        32 ~~llGpnGsGKSTLLr~iaGl~-----~p~~G------~I~i~g~   65 (359)
T 2yyz_A           32 VALLGPSGCGKTTTLLMLAGIY-----KPTSG------EIYFDDV   65 (359)
T ss_dssp             EEEECSTTSSHHHHHHHHHTSS-----CCSEE------EEEETTE
T ss_pred             EEEEcCCCchHHHHHHHHHCCC-----CCCcc------EEEECCE
Confidence            7899999999999999998753     23333      5667774

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=85.99  E-value=0.36  Score=47.23  Aligned_cols=22  Identities=23%  Similarity=0.365  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      ..|+|+|.+||||||+.+.+..
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999864

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=85.98  E-value=0.36  Score=49.72  Aligned_cols=21  Identities=38%  Similarity=0.627  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~   30 (730)
                      ++++|++|+|||+|++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            899999999999999999863

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=85.96  E-value=0.4  Score=45.14  Aligned_cols=20  Identities=25%  Similarity=0.386  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~   29 (730)
                      .+|+|++|+|||||+..+..
T Consensus        29 ~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           29 TAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999999854

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=85.90  E-value=0.29  Score=45.77  Aligned_cols=22  Identities=23%  Similarity=0.474  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++++|++|+|||+|++.+.+.
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998763

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=85.89  E-value=0.38  Score=52.08  Aligned_cols=34  Identities=24%  Similarity=0.389  Sum_probs=26.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE   54 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~   54 (730)
                      ++++|++|+|||||++.+.+-..     |+.|      .+.++|.
T Consensus        32 ~~llGpnGsGKSTLLr~iaGl~~-----p~~G------~I~i~g~   65 (362)
T 2it1_A           32 MALLGPSGSGKSTLLYTIAGIYK-----PTSG------KIYFDEK   65 (362)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSSC-----CSEE------EEEETTE
T ss_pred             EEEECCCCchHHHHHHHHhcCCC-----CCce------EEEECCE
Confidence            78999999999999999987532     3333      5667774

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=85.85  E-value=0.37  Score=50.64  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      -++++|++||||||+++.+.+-
T Consensus       102 vi~lvG~nGsGKTTll~~Lag~  123 (302)
T 3b9q_A          102 VIMIVGVNGGGKTTSLGKLAHR  123 (302)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4899999999999999998753

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=85.79  E-value=0.36  Score=49.49  Aligned_cols=21  Identities=24%  Similarity=0.547  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~   30 (730)
                      ++|+|++|+|||||+..+.+.
T Consensus        38 ~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           38 IMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHH
Confidence            789999999999999998764

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=85.73  E-value=0.39  Score=46.58  Aligned_cols=22  Identities=27%  Similarity=0.385  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .-|+|+|.+|+|||||++.+.+
T Consensus        23 ~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           23 LVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999998875

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=85.71  E-value=0.42  Score=51.60  Aligned_cols=23  Identities=26%  Similarity=0.577  Sum_probs=21.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHH
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRF   27 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrL   27 (730)
                      ...+||+++|.+++|||||++++
T Consensus        31 ~~~~killlG~~~SGKST~~kq~   53 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQM   53 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHH
Confidence            35689999999999999999998

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=85.71  E-value=0.25  Score=52.17  Aligned_cols=35  Identities=26%  Similarity=0.503  Sum_probs=26.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE   54 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~   54 (730)
                      .++|+|++|+|||||++.+.+-.     .|+.|      .+.++|.
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl~-----~p~~G------~I~i~G~  116 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRFY-----DISSG------CIRIDGQ  116 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTSS-----CCSEE------EEEETTE
T ss_pred             EEEEECCCCchHHHHHHHHHcCC-----CCCCc------EEEECCE
Confidence            48999999999999999887542     24444      5666773

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=85.69  E-value=0.41  Score=44.42  Aligned_cols=21  Identities=29%  Similarity=0.572  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .|+|.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999864

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=85.65  E-value=0.42  Score=46.85  Aligned_cols=22  Identities=23%  Similarity=0.475  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      ..|+|+|.+||||||+.+.+..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=85.63  E-value=0.37  Score=50.01  Aligned_cols=22  Identities=32%  Similarity=0.415  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .-|++.|++||||||+.+++..
T Consensus        34 ~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           34 TAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999975

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=85.60  E-value=0.39  Score=52.10  Aligned_cols=35  Identities=26%  Similarity=0.397  Sum_probs=27.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeE
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNER   55 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~   55 (730)
                      ++++|++|+|||||++.+.+-..     |+.|      .+.++|..
T Consensus        32 ~~llGpnGsGKSTLLr~iaGl~~-----p~~G------~I~i~g~~   66 (372)
T 1g29_1           32 MILLGPSGCGKTTTLRMIAGLEE-----PSRG------QIYIGDKL   66 (372)
T ss_dssp             EEEECSTTSSHHHHHHHHHTSSC-----CSEE------EEEETTEE
T ss_pred             EEEECCCCcHHHHHHHHHHcCCC-----CCcc------EEEECCEE
Confidence            78999999999999999987532     3433      66778754

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=85.57  E-value=0.4  Score=52.06  Aligned_cols=34  Identities=26%  Similarity=0.422  Sum_probs=26.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE   54 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~   54 (730)
                      ++|+|++|+|||||++.+.+-.     .|+.|      .+.++|.
T Consensus        57 ~~IiGpnGaGKSTLlr~i~GL~-----~p~~G------~I~i~G~   90 (366)
T 3tui_C           57 YGVIGASGAGKSTLIRCVNLLE-----RPTEG------SVLVDGQ   90 (366)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS-----CCSEE------EEEETTE
T ss_pred             EEEEcCCCchHHHHHHHHhcCC-----CCCce------EEEECCE
Confidence            7899999999999999998743     24444      6667774

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=85.53  E-value=0.4  Score=46.12  Aligned_cols=20  Identities=25%  Similarity=0.210  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~   29 (730)
                      ++++|++|+|||||+..+..
T Consensus        23 ~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           23 TQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            79999999999999999987

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=85.50  E-value=0.4  Score=46.33  Aligned_cols=22  Identities=23%  Similarity=0.285  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      -.+++.|++|+|||+|+..+..
T Consensus        53 ~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           53 QAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998864

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=85.44  E-value=0.41  Score=52.25  Aligned_cols=35  Identities=37%  Similarity=0.505  Sum_probs=26.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeE
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNER   55 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~   55 (730)
                      ++++|++|+|||||++.+.+-..     |+.|      .+.++|..
T Consensus        32 ~~llGpsGsGKSTLLr~iaGl~~-----p~~G------~I~i~G~~   66 (381)
T 3rlf_A           32 VVFVGPSGCGKSTLLRMIAGLET-----ITSG------DLFIGEKR   66 (381)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSSC-----CSEE------EEEETTEE
T ss_pred             EEEEcCCCchHHHHHHHHHcCCC-----CCCe------EEEECCEE
Confidence            78999999999999999987542     3433      56677743

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=85.38  E-value=0.41  Score=51.97  Aligned_cols=34  Identities=29%  Similarity=0.403  Sum_probs=26.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE   54 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~   54 (730)
                      ++++|++|+|||||++.+.+-..     |+.|      .+.++|.
T Consensus        40 ~~llGpnGsGKSTLLr~iaGl~~-----p~~G------~I~i~g~   73 (372)
T 1v43_A           40 LVLLGPSGCGKTTTLRMIAGLEE-----PTEG------RIYFGDR   73 (372)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSSC-----CSEE------EEEETTE
T ss_pred             EEEECCCCChHHHHHHHHHcCCC-----CCce------EEEECCE
Confidence            78999999999999999987532     3434      5666774

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=85.37  E-value=0.41  Score=46.78  Aligned_cols=21  Identities=19%  Similarity=0.292  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~   30 (730)
                      ++|+|++|+|||||+..+...
T Consensus        27 ~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           27 TEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999999874

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=85.35  E-value=0.5  Score=45.28  Aligned_cols=22  Identities=18%  Similarity=0.448  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      ..|+|.|.+||||||+.+.+..
T Consensus        16 ~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           16 SVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999999874

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=85.34  E-value=0.39  Score=50.13  Aligned_cols=22  Identities=23%  Similarity=0.510  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .-|+|+|++|+|||||++.+.+
T Consensus        81 ~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           81 YIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999999876

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=85.26  E-value=0.4  Score=51.08  Aligned_cols=23  Identities=26%  Similarity=0.541  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      --++++|++||||||+++.+.+.
T Consensus       130 ~vi~lvG~nGaGKTTll~~Lag~  152 (328)
T 3e70_C          130 YVIMFVGFNGSGKTTTIAKLANW  152 (328)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999998753

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=85.18  E-value=0.57  Score=45.62  Aligned_cols=22  Identities=32%  Similarity=0.655  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      +.|+|.|.+||||||+.+.+..
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999999975

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=85.18  E-value=0.42  Score=48.50  Aligned_cols=22  Identities=27%  Similarity=0.644  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      ..|+|.|.+||||||+.+.+..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            3599999999999999998864

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=85.13  E-value=0.44  Score=45.38  Aligned_cols=21  Identities=33%  Similarity=0.630  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      -++|.|++|+|||+|+..+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998864

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=85.00  E-value=0.33  Score=45.48  Aligned_cols=22  Identities=27%  Similarity=0.338  Sum_probs=15.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      ..|+|.|.+||||||+.+.+..
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999863

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=84.87  E-value=0.44  Score=48.48  Aligned_cols=21  Identities=52%  Similarity=0.741  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~   30 (730)
                      |+++|++|+|||+|++.+.+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHH
Confidence            899999999999999999864

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=84.77  E-value=0.43  Score=51.40  Aligned_cols=21  Identities=24%  Similarity=0.447  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .|+|+|++|+|||||++.+++
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999875

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=84.74  E-value=0.57  Score=44.56  Aligned_cols=24  Identities=21%  Similarity=0.311  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcC
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      ...|+|+|.+||||||+.+.|...
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            367999999999999999999864

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=84.74  E-value=0.45  Score=51.04  Aligned_cols=22  Identities=36%  Similarity=0.655  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++|+|++|+|||||++.+.+-
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5899999999999999999864

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=84.68  E-value=0.47  Score=44.73  Aligned_cols=21  Identities=48%  Similarity=0.752  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .|+|+|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998864

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=84.62  E-value=0.49  Score=44.62  Aligned_cols=22  Identities=32%  Similarity=0.447  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      ..|+++|.+|+||||+.+.+..
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999998865

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=84.59  E-value=0.35  Score=48.02  Aligned_cols=23  Identities=39%  Similarity=0.686  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .-|+|+|..|+||||+++.+.+.
T Consensus        21 ~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           21 FTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            45899999999999999998764

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=84.59  E-value=0.46  Score=48.18  Aligned_cols=21  Identities=24%  Similarity=0.289  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      -|+|+|++|+|||||...+..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            379999999999999999864

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=84.52  E-value=0.48  Score=44.69  Aligned_cols=20  Identities=25%  Similarity=0.499  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~   29 (730)
                      +++.|++|+|||+|+..+..
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999998865

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=84.29  E-value=0.46  Score=50.01  Aligned_cols=22  Identities=36%  Similarity=0.597  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++++|++|+|||||++.+.+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3899999999999999998763

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=84.25  E-value=0.55  Score=47.44  Aligned_cols=21  Identities=24%  Similarity=0.428  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFT   28 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl   28 (730)
                      ..|+|+|++|+||||+++.+.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            469999999999999999997

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=84.16  E-value=0.54  Score=46.59  Aligned_cols=22  Identities=27%  Similarity=0.567  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      ..|+|+|.+|+||||+.+.+..
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=84.12  E-value=0.46  Score=51.27  Aligned_cols=21  Identities=19%  Similarity=0.480  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .++|+|++|+|||||++.+.+
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999999886

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=84.11  E-value=0.35  Score=52.07  Aligned_cols=34  Identities=21%  Similarity=0.352  Sum_probs=26.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE   54 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~   54 (730)
                      ++++|++|+|||||++.+.+-.     .|+.|      .+.++|.
T Consensus        29 ~~llGpnGsGKSTLLr~iaGl~-----~p~~G------~I~~~g~   62 (348)
T 3d31_A           29 FVILGPTGAGKTLFLELIAGFH-----VPDSG------RILLDGK   62 (348)
T ss_dssp             EEEECCCTHHHHHHHHHHHTSS-----CCSEE------EEEETTE
T ss_pred             EEEECCCCccHHHHHHHHHcCC-----CCCCc------EEEECCE
Confidence            7899999999999999998753     23433      5667774

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=84.05  E-value=0.5  Score=51.63  Aligned_cols=22  Identities=36%  Similarity=0.611  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++++|++|+|||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            3799999999999999999863

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=83.90  E-value=0.45  Score=50.51  Aligned_cols=22  Identities=27%  Similarity=0.555  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++|+|++|+|||||++.+.+-
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999864

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=83.54  E-value=0.6  Score=45.22  Aligned_cols=21  Identities=29%  Similarity=0.409  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      -+.|+|.+|+|||||+.++..
T Consensus         6 ~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            6 VWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999875

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=83.50  E-value=0.56  Score=46.87  Aligned_cols=21  Identities=38%  Similarity=0.643  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .|++.|++|+|||+|++.+.+
T Consensus        47 ~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHH
Confidence            589999999999999999875

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=83.49  E-value=0.56  Score=46.93  Aligned_cols=22  Identities=23%  Similarity=0.391  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .-|+|.|.+||||||+++++..
T Consensus        27 ~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           27 AFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            4589999999999999999875

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=83.39  E-value=0.56  Score=45.64  Aligned_cols=22  Identities=23%  Similarity=0.413  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .-|+++|.+|+||||+.+.+..
T Consensus        26 ~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           26 LTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999998864

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=83.35  E-value=0.57  Score=50.21  Aligned_cols=23  Identities=26%  Similarity=0.569  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      +++|+|++|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998764

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=83.12  E-value=0.64  Score=46.68  Aligned_cols=20  Identities=25%  Similarity=0.569  Sum_probs=17.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~   29 (730)
                      |+|+|+|||||+|...++..
T Consensus        32 I~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56789999999999998874

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=83.05  E-value=0.57  Score=50.62  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      -|+++|++||||||+++.+.+-
T Consensus       159 vi~lvG~nGsGKTTll~~Lag~  180 (359)
T 2og2_A          159 VIMIVGVNGGGKTTSLGKLAHR  180 (359)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCChHHHHHHHHHhh
Confidence            4899999999999999998753

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=83.00  E-value=0.57  Score=49.85  Aligned_cols=23  Identities=22%  Similarity=0.407  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHc
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .+=|.|+|++|||||||++.+.+
T Consensus        92 p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           92 PYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35699999999999999998864

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=82.99  E-value=0.6  Score=44.68  Aligned_cols=22  Identities=36%  Similarity=0.489  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      -.+++.|++|+|||+|+..+..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~   76 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIAN   76 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=82.81  E-value=0.7  Score=42.95  Aligned_cols=22  Identities=32%  Similarity=0.537  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      -.|+|.|.+||||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=82.78  E-value=0.49  Score=49.73  Aligned_cols=22  Identities=36%  Similarity=0.543  Sum_probs=19.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      ++|+|..|+|||||++.+.+..
T Consensus         7 ~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            7 TLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEecCCCCHHHHHHHHHhhc
Confidence            6899999999999999999753

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=82.73  E-value=0.75  Score=47.98  Aligned_cols=24  Identities=17%  Similarity=0.252  Sum_probs=20.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHc
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      ....|+|+|.+|||||||++.+..
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999988764

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=82.72  E-value=0.34  Score=52.17  Aligned_cols=35  Identities=20%  Similarity=0.316  Sum_probs=26.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeE
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNER   55 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~   55 (730)
                      ++++|++|+|||||++.+.+-.     .|+.|      .+.++|..
T Consensus        34 ~~llGpnGsGKSTLLr~iaGl~-----~p~~G------~I~i~g~~   68 (353)
T 1oxx_K           34 FGILGPSGAGKTTFMRIIAGLD-----VPSTG------ELYFDDRL   68 (353)
T ss_dssp             EEEECSCHHHHHHHHHHHHTSS-----CCSEE------EEEETTEE
T ss_pred             EEEECCCCCcHHHHHHHHhCCC-----CCCce------EEEECCEE
Confidence            7899999999999999998753     23434      66677754

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=82.55  E-value=0.49  Score=47.70  Aligned_cols=23  Identities=30%  Similarity=0.466  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHc
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      ...|+++|.+|+||||+.+.+..
T Consensus        32 ~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           32 PIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             CEEEEEESCGGGTTHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999875

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=82.35  E-value=0.69  Score=45.19  Aligned_cols=20  Identities=40%  Similarity=0.672  Sum_probs=17.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~   29 (730)
                      ++|+|++|+|||+|+.++..
T Consensus        26 ~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           26 VLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999888764

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=82.16  E-value=0.75  Score=42.96  Aligned_cols=19  Identities=26%  Similarity=0.599  Sum_probs=17.1

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q psy17467         10 VVLVGNAGVGKTCLVRRFT   28 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl   28 (730)
                      .+|+|+.|+|||||+..+.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4899999999999999865

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=82.14  E-value=0.61  Score=51.98  Aligned_cols=22  Identities=41%  Similarity=0.613  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++|+|++|+|||||++.+.+-
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            4899999999999999999874

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=81.95  E-value=0.71  Score=47.17  Aligned_cols=22  Identities=27%  Similarity=0.508  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .-|+|.|.+|+||||+.+++..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999975

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=81.92  E-value=0.64  Score=52.52  Aligned_cols=21  Identities=33%  Similarity=0.681  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      -|+|+|.+|||||||++.+.+
T Consensus       295 VI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          295 VILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcccHHHHHHHHHH
Confidence            489999999999999999875

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=81.80  E-value=0.67  Score=48.11  Aligned_cols=21  Identities=29%  Similarity=0.525  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      -++|.|++|+|||+|++.+.+
T Consensus        47 ~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           47 NIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999875

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=81.69  E-value=0.67  Score=51.05  Aligned_cols=22  Identities=23%  Similarity=0.317  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      -++|+|++|+|||||++.+++.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            3899999999999999999864

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=81.47  E-value=0.7  Score=47.04  Aligned_cols=20  Identities=30%  Similarity=0.453  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~   29 (730)
                      ++|+|++|+|||||+..+..
T Consensus        33 ~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           33 GALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            78999999999999999875

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=81.14  E-value=2.4  Score=38.68  Aligned_cols=23  Identities=30%  Similarity=0.400  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      ..|++.|++|+|||++.+.+...
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CcEEEECCCCccHHHHHHHHHHh
Confidence            35899999999999999887643

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=80.76  E-value=0.79  Score=50.68  Aligned_cols=23  Identities=26%  Similarity=0.453  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      +++|+|++|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999998753

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=80.71  E-value=0.77  Score=46.33  Aligned_cols=23  Identities=30%  Similarity=0.478  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      -.+++.|++|+|||+|++.+...
T Consensus        52 ~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           52 KGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             SEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999999753

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=80.69  E-value=1  Score=45.87  Aligned_cols=23  Identities=26%  Similarity=0.531  Sum_probs=19.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHc
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      ...+++.|+||+|||++++.+..
T Consensus        67 ~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           67 TLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            34699999999999999986543

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=80.65  E-value=0.85  Score=51.70  Aligned_cols=23  Identities=30%  Similarity=0.469  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGV   31 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~   31 (730)
                      .++++|++|+|||||++.+.+-.
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999998754

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=80.65  E-value=0.78  Score=46.66  Aligned_cols=23  Identities=35%  Similarity=0.473  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      -.+++.|++|+|||+|++.+.+.
T Consensus        55 ~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           55 KGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            46899999999999999999763

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=80.51  E-value=0.83  Score=45.23  Aligned_cols=21  Identities=33%  Similarity=0.586  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .|++.|++|+|||+|++.+..
T Consensus        41 ~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           41 GALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999875

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=80.31  E-value=0.78  Score=51.76  Aligned_cols=22  Identities=23%  Similarity=0.339  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++|+|++|+||||+++.+++-
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~  283 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMF  283 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            3899999999999999999864

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=80.29  E-value=0.83  Score=46.82  Aligned_cols=22  Identities=36%  Similarity=0.576  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      -++|.|++|+|||||++.+...
T Consensus        33 ~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           33 LTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcCCHHHHHHHHHHH
Confidence            3789999999999999999753

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=80.22  E-value=0.81  Score=52.11  Aligned_cols=22  Identities=36%  Similarity=0.542  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++++|++|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhc
Confidence            5899999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	730
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	3e-37
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	3e-06
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	1e-36
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	1e-05
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	2e-36
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	3e-33
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	5e-09
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	2e-31
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	1e-06
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	1e-29
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	2e-08
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	8e-29
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	4e-06
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	5e-28
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	4e-06
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	5e-28
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	1e-07
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	5e-28
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	2e-06
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	2e-27
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	3e-07
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	9e-25
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	2e-07
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	9e-24
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	4e-07
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	1e-21
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	2e-06
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	2e-21
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	3e-06
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	1e-20
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	2e-20
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	2e-05
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	2e-18
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	6e-06
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	5e-18
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	5e-06
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	5e-18
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	0.004
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	6e-18
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	1e-04
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	1e-17
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	5e-05
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	2e-17
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	3e-07
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	4e-17
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	0.001
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	1e-16
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	2e-16
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	4e-06
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	2e-16
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	3e-06
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	2e-16
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	9e-06
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-16
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-05
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	3e-16
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	1e-05
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	5e-16
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	7e-05
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	1e-15
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	5e-06
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	2e-15
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	2e-05
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	4e-15
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	3e-06
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	5e-15
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	7e-06
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	9e-15
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	2e-14
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-05
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	4e-14
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	9e-06
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	8e-14
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	8e-13
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	0.002
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	9e-13
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	1e-12
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	2e-06
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-12
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	0.001
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	6e-12
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	1e-11
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	1e-05
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	9e-11
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	3e-06
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	1e-10
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	2e-10
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	1e-04
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	2e-10
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	2e-05
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	5e-10
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-04
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	2e-09
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	1e-05
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	7e-09
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	3e-06
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-08
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-06
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	2e-08
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	7e-04
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	6e-08
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	1e-06
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	4e-05
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	3e-06
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	3e-04

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  134 bits (339), Expect = 3e-37
 Identities = 65/158 (41%), Positives = 108/158 (68%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
           + Y +LFK++L+G++GVGKTC++ RF++  F     +TIG+DF I+T+E++ +RIKLQIW
Sbjct: 1   KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 60

Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGT 121
           DTAGQERFR+IT +YYR A  ++LVYDI+ + +FD + +W+R IEE+AS  V ++++G  
Sbjct: 61  DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNK 120

Query: 122 SGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDE 159
             +    +++   G    +D  +     S K +++ + 
Sbjct: 121 CDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVEN 158

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.9 bits (108), Expect = 3e-06
 Identities = 17/62 (27%), Positives = 30/62 (48%)

Query: 192 HSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
                  +       + R++  E GE  A  + + ++ETSAKA+ NVE  F  +A ++  
Sbjct: 110 ADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKA 169

Query: 252 KL 253
           K+
Sbjct: 170 KM 171

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (334), Expect = 1e-36
 Identities = 97/117 (82%), Positives = 109/117 (93%)

Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
           DY FLFK+VL+GNAGVGKTCLVRRFTQG+FPPGQGATIGVDFMIKTVEIN E++KLQIWD
Sbjct: 1   DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 60

Query: 63  TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           TAGQERFRSITQSYYRSA+ALIL YDI+C+ +F CL +WLREIE+YAS KV+ VLVG
Sbjct: 61  TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVG 117

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (103), Expect = 1e-05
 Identities = 25/53 (47%), Positives = 34/53 (64%)

Query: 200 ARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
                  E RE+  +  E+F++  DMYYLETSAK SDNVEKLF+ +A  L+ +
Sbjct: 117 GNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE 169

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  133 bits (336), Expect = 2e-36
 Identities = 64/117 (54%), Positives = 93/117 (79%)

Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
           +Y +LFK++L+GN+GVGK+CL+ RF+   +     +TIGVDF IKTVE++ + +KLQIWD
Sbjct: 2   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 61

Query: 63  TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           TAGQERFR+IT SYYR +H +I+VYD++ Q +F+ +  WL+EI+ YA+  VL++LVG
Sbjct: 62  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG 118

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  123 bits (309), Expect = 3e-33
 Identities = 53/95 (55%), Positives = 73/95 (76%)

Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
           + K++L+G++GVGK+CL+ RF +  F P    TIG+DF IKTV+IN +++KLQIWDTAGQ
Sbjct: 2   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61

Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDW 101
           ERFR+IT +YYR A  +ILVYDI+ + TF  +  W
Sbjct: 62  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQW 96

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.6 bits (128), Expect = 5e-09
 Identities = 22/90 (24%), Positives = 41/90 (45%)

Query: 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH 223
            +++V+           +  F   +   +      +  NK D E R +  + GE  AK  
Sbjct: 77  GIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKEL 136

Query: 224 DMYYLETSAKASDNVEKLFMQIAAELMEKL 253
            + ++E+SAK  DNV ++F  +A  + EK+
Sbjct: 137 GIPFIESSAKNDDNVNEIFFTLAKLIQEKI 166

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  118 bits (297), Expect = 2e-31
 Identities = 52/117 (44%), Positives = 83/117 (70%)

Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
           ++ ++FK++++GN+ VGKT  + R+    F P   +T+G+DF +KT+  N++RIKLQIWD
Sbjct: 1   NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60

Query: 63  TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           TAGQER+R+IT +YYR A   IL+YDI+ + +F+ + DW  +I+ Y+      +LVG
Sbjct: 61  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVG 117

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.2 bits (111), Expect = 1e-06
 Identities = 16/90 (17%), Positives = 35/90 (38%)

Query: 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR 222
             +LM  +       A  +    + +    +  +  +       ++R + +E G   A  
Sbjct: 80  GFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH 139

Query: 223 HDMYYLETSAKASDNVEKLFMQIAAELMEK 252
               + E SAK + NV++ F ++   + EK
Sbjct: 140 LGFEFFEASAKDNINVKQTFERLVDVICEK 169

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 1e-29
 Identities = 60/119 (50%), Positives = 86/119 (72%), Gaps = 1/119 (0%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGAT-IGVDFMIKTVEINNERIKLQI 60
           + Y   FKV+LVG++GVGKTCL+ RF  G F  G   + +G+DF  K ++++  ++KLQ+
Sbjct: 1   DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQM 60

Query: 61  WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           WDTAGQERFRS+T +YYR AHAL+L+YD++ + +FD +  WL EI EYA   V  +L+G
Sbjct: 61  WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLG 119

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 2e-08
 Identities = 19/67 (28%), Positives = 29/67 (43%)

Query: 183 CFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF 242
              +     H   +  +        +R +  E GE  AK + + ++ETSAK   NV+  F
Sbjct: 102 LTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF 161

Query: 243 MQIAAEL 249
             IA EL
Sbjct: 162 TAIAKEL 168

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (277), Expect = 8e-29
 Identities = 54/116 (46%), Positives = 84/116 (72%)

Query: 4   YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
           Y +LFKVVL+G++GVGK+ L+ RFT+  F     +TIGV+F  ++++++ + IK QIWDT
Sbjct: 1   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60

Query: 64  AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           AGQER+R IT +YYR A   +LVYDI+   T++ +  WL+E+ ++A   ++ +LVG
Sbjct: 61  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 116

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 4e-06
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 1/94 (1%)

Query: 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDRED-REIPTEVGEDFAKR 222
             L+V+           E           SN +  +  NK D    R +PT+    FA++
Sbjct: 79  GALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK 138

Query: 223 HDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
           +++ ++ETSA  S NVE+ F  I  E+   +++K
Sbjct: 139 NNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK 172

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 5e-28
 Identities = 50/116 (43%), Positives = 82/116 (70%)

Query: 4   YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
           Y ++FK +++G+ GVGK+CL+ +FT+  F      TIGV+F  + +E++ ++IKLQIWDT
Sbjct: 1   YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 60

Query: 64  AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           AGQERFR++T+SYYR A   ++VYDI+ + T++ L+ WL +     +   + +L+G
Sbjct: 61  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 116

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 4e-06
 Identities = 17/87 (19%), Positives = 36/87 (41%)

Query: 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR 222
             L++  +         +       +L   +  I  +         R++  E  + FA+ 
Sbjct: 79  GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEE 138

Query: 223 HDMYYLETSAKASDNVEKLFMQIAAEL 249
           + + +LE SAK  +NVE  F++ A ++
Sbjct: 139 NGLLFLEASAKTGENVEDAFLEAAKKI 165

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 5e-28
 Identities = 55/107 (51%), Positives = 75/107 (70%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
           ED     K++++G +GVGK+ L+ RFT   F P   ATIGVDF +KT+ ++  + KL IW
Sbjct: 2   EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW 61

Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY 108
           DTAGQERFR++T SYYR A  +ILVYD++ + TF  L +WL E+E Y
Sbjct: 62  DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETY 108

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 1e-07
 Identities = 22/89 (24%), Positives = 46/89 (51%)

Query: 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR 222
             +L+  V      +  +     L +    ++ ++ +  NKID+E+RE+    G  FA++
Sbjct: 82  GVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARK 141

Query: 223 HDMYYLETSAKASDNVEKLFMQIAAELME 251
           H M ++E SAK  D V+  F ++  ++++
Sbjct: 142 HSMLFIEASAKTCDGVQCAFEELVEKIIQ 170

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 5e-28
 Identities = 56/116 (48%), Positives = 80/116 (68%)

Query: 4   YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
           Y FLFK +++GNAG GK+CL+ +F +  F      TIGV+F  K + +  + +KLQIWDT
Sbjct: 2   YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 61

Query: 64  AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           AGQERFRS+T+SYYR A   +LVYDI+ + T++ LT+WL +    AS  ++ +L G
Sbjct: 62  AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 117

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 2e-06
 Identities = 23/95 (24%), Positives = 39/95 (41%)

Query: 159 EHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGED 218
                 LL+  +       A          L   +  I      K    DRE+       
Sbjct: 76  RGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASR 135

Query: 219 FAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKL 253
           FA+ +++ +LETSA   +NVE+ F+Q A +++ K+
Sbjct: 136 FAQENELMFLETSALTGENVEEAFVQCARKILNKI 170

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (267), Expect = 2e-27
 Identities = 44/129 (34%), Positives = 78/129 (60%), Gaps = 10/129 (7%)

Query: 3   DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE-------- 54
           DY +L K++ +G++GVGKT  + R+T   F P    T+G+DF  K V  N +        
Sbjct: 1   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 60

Query: 55  --RIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFK 112
             ++ LQ+WDTAGQERFRS+T +++R A   +L++D++ Q +F  + +W+ +++  A  +
Sbjct: 61  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 120

Query: 113 VLRVLVGGT 121
              +++ G 
Sbjct: 121 NPDIVLIGN 129

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (116), Expect = 3e-07
 Identities = 18/95 (18%), Positives = 37/95 (38%)

Query: 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR 222
             L+    +       RN      A+    + +I  +       + RE+      + A +
Sbjct: 91  FLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADK 150

Query: 223 HDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKL 257
           + + Y ETSA    NVEK    +   +M+++ + +
Sbjct: 151 YGIPYFETSAATGQNVEKAVETLLDLIMKRMEQCV 185

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.6 bits (247), Expect = 9e-25
 Identities = 57/114 (50%), Positives = 83/114 (72%)

Query: 6   FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
           +LFK +++G+ GVGK+CL+ +FT   F P    TIGV+F  + V I+ ++IKLQIWDTAG
Sbjct: 2   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 61

Query: 66  QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           QE FRSIT+SYYR A   +LVYDI+ + TF+ LT WL +  +++S  ++ +L+G
Sbjct: 62  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIG 115

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 2e-07
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 2/105 (1%)

Query: 155 LDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCM-ARNKIDRED-REIP 212
           +    +  A   ++   +   +   +   +   + +  S+N+  M   NK D E  R++ 
Sbjct: 68  ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVK 127

Query: 213 TEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKL 257
            E GE FA+ H + ++ETSAK + NVE+ F+  A E+  K+ + L
Sbjct: 128 REEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGL 172

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.2 bits (238), Expect = 9e-24
 Identities = 50/118 (42%), Positives = 72/118 (61%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+V +G   VGKT L+ RF    F     ATIG+DF+ KT+ + +  I+LQ+WDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLK 125
           RFRS+  SY R + A ++VYDI+   +F   T W+ ++       V+ +LVG  + L 
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 118

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 4e-07
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 191 GHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
           G    I  +       + R++  E GE  AK  ++ ++ETSAKA  NV++LF ++AA L
Sbjct: 103 GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.0 bits (222), Expect = 1e-21
 Identities = 46/125 (36%), Positives = 73/125 (58%)

Query: 6   FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
           + FKVVL+G   VGKT LV R+ +  F      T+G  F+ K + I  +R+ L IWDTAG
Sbjct: 2   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61

Query: 66  QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLK 125
           QERF ++   YYR ++  ILVYDI+ + +F  + +W++E+ +    ++   +VG    L+
Sbjct: 62  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 121

Query: 126 IVNEM 130
               +
Sbjct: 122 KERHV 126

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 1/89 (1%)

Query: 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVG-EDFAKR 222
             ++V+         + +           +    C+  NKID E     +    E +A+ 
Sbjct: 78  GAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAES 137

Query: 223 HDMYYLETSAKASDNVEKLFMQIAAELME 251
               +  TSAK +  +E+LF+ +   ++E
Sbjct: 138 VGAKHYHTSAKQNKGIEELFLDLCKRMIE 166

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.0 bits (222), Expect = 2e-21
 Identities = 43/106 (40%), Positives = 66/106 (62%)

Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
           LFKV+L+G+ GVGK+ L+ R+    F      TIGV+F+ K +E++   + +QIWDTAGQ
Sbjct: 6   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 65

Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFK 112
           ERFRS+   +YR +   +L + +    +F  L++W +E   YA  K
Sbjct: 66  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVK 111

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 3e-06
 Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 2/93 (2%)

Query: 160 HVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDF 219
            +L   +    +       + E  +Y    E  S     +    ID  +R++ TE  + +
Sbjct: 82  CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNK-IDISERQVSTEEAQAW 140

Query: 220 AKRH-DMYYLETSAKASDNVEKLFMQIAAELME 251
            + + D  Y ETSAK + NV   F +    ++ 
Sbjct: 141 CRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 173

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.1 bits (217), Expect = 1e-20
 Identities = 46/249 (18%), Positives = 76/249 (30%), Gaps = 69/249 (27%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   FP     T+  D    TV I  E   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIV 127
            +  +    Y      ++ + +    +F+ + +       +   K   +LVG        
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG-------- 114

Query: 128 NEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLA 187
                                   + DL +D   +  L         P+ A   A     
Sbjct: 115 -----------------------TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL-- 149

Query: 188 SLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA 247
                                                + Y+E SA     ++ +F +   
Sbjct: 150 -----------------------------------KAVKYVECSALTQKGLKNVFDEAIL 174

Query: 248 ELMEKLAEK 256
             +E    K
Sbjct: 175 AALEPPEPK 183

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.0 bits (214), Expect = 2e-20
 Identities = 49/112 (43%), Positives = 75/112 (66%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VL+G + VGK+ LV RF +G F   Q +TIG  F+ +TV +++  +K +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           R+ S+   YYR A A I+VYDI+ + +F    +W++E++  AS  ++  L G
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG 118

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 16/56 (28%), Positives = 28/56 (50%)

Query: 196 IHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
           I            R +  +  + +A  + + ++ETSAK S NV ++FM IA +L +
Sbjct: 114 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.3 bits (199), Expect = 2e-18
 Identities = 48/111 (43%), Positives = 69/111 (62%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+VL+G A VGK+ +V RF    F   +  TIG  F+ + V IN   +K +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           F S+   YYR+A A ++VYD++   +F     W++E+ E AS  ++  LVG
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVG 115

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (105), Expect = 6e-06
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 4/93 (4%)

Query: 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDR----EDREIPTEVGEDF 219
             L+V+         +          +   + I  +  NKID      +R++  E GE  
Sbjct: 78  AALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKL 137

Query: 220 AKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
           A+   + + ETSAK  +NV  +F+ I  ++  K
Sbjct: 138 AEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.1 bits (196), Expect = 5e-18
 Identities = 51/105 (48%), Positives = 75/105 (71%), Gaps = 1/105 (0%)

Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
           +FK++++G++ VGKTCL  RF  G FP    ATIGVDF  + V+I+ ERIK+Q+WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 67  ERF-RSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYAS 110
           ERF +S+ Q YYR+ HA++ VYD++   +F  L  W+ E +++  
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL 106

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.0 bits (105), Expect = 5e-06
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDRED--REIPTEVGEDFAK 221
            ++ V+    +       A          +N+I  +            ++PT++ + FA 
Sbjct: 78  AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD 137

Query: 222 RHDMYYLETSAKAS---DNVEKLFMQIA 246
            H M   ETSAK     D+VE +FM +A
Sbjct: 138 THSMPLFETSAKNPNDNDHVEAIFMTLA 165

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.0 bits (196), Expect = 5e-18
 Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 2/113 (1%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +K+V++G+ GVGK+ L  +F QG+F      TI  D   K VE++ ++  L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY-ASFKVLRVLVG 119
           +F ++   Y ++     LVY I+ Q TF+ L D   +I     +  V  +LVG
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVG 115

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 8/29 (27%), Positives = 18/29 (62%)

Query: 221 KRHDMYYLETSAKASDNVEKLFMQIAAEL 249
           +  +  +LE+SAK+  NV ++F  +  ++
Sbjct: 137 QWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 80.1 bits (196), Expect = 6e-18
 Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 4/157 (2%)

Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
           L KV+++G++GVGKT L+ ++    F     ATIG DF+ K V +++  + +QIWDTAGQ
Sbjct: 2   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61

Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYAS----FKVLRVLVGGTS 122
           ERF+S+  ++YR A   +LV+D++   TF  L  W  E    AS         V++G   
Sbjct: 62  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 121

Query: 123 GLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDE 159
            L+        A   C     +     S K  ++ ++
Sbjct: 122 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQ 158

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 13/59 (22%), Positives = 24/59 (40%)

Query: 198 CMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
            +         +            ++++ Y ETSAK + NVE+ F  IA   +++  E 
Sbjct: 116 VLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 174

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 78.8 bits (193), Expect = 1e-17
 Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 2/114 (1%)

Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
           L KV++VG+ GVGK+ L  +F    F      T   D   K V ++ E +++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGQ 62

Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY-ASFKVLRVLVG 119
           E + +I  +Y+RS    + V+ I+   +F    D+  +I        V  +LVG
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 116

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 42.2 bits (98), Expect = 5e-05
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 219 FAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
            A + ++ Y+ETSAK   NV+K+F  +  E+  +
Sbjct: 135 RADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.1 bits (191), Expect = 2e-17
 Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 2/113 (1%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +K+V+VG  GVGK+ L  +  Q  F      TI  D   K V I+ E   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASF-KVLRVLVG 119
            + ++   Y R+    + V+ I+   +F+ +  +  +I+       V  VLVG
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 3e-07
 Identities = 16/67 (23%), Positives = 31/67 (46%)

Query: 185 YLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ 244
            +  ++   +    +  NK D   R + +   +D A+ + + Y+ETSAK    VE  F  
Sbjct: 99  QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYT 158

Query: 245 IAAELME 251
           +  E+ +
Sbjct: 159 LVREIRQ 165

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.8 bits (190), Expect = 4e-17
 Identities = 40/104 (38%), Positives = 68/104 (65%), Gaps = 1/104 (0%)

Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERI-KLQIWDTAG 65
           + KV+++G++GVGKT L+ R+    +     ATIG DF+ K V ++ +++  +Q+WDTAG
Sbjct: 2   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 66  QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA 109
           QERF+S+  ++YR A   +LVYD++   +F+ +  W  E   +A
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHA 105

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 221 KRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
              D+    TSAK + NV+  F +IA   +++
Sbjct: 142 SLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 173

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.5 bits (190), Expect = 1e-16
 Identities = 17/106 (16%), Positives = 39/106 (36%), Gaps = 8/106 (7%)

Query: 2   EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
           + Y+   +++L+G    GK+ +V++            T G+       +   +++   ++
Sbjct: 1   QVYRATHRLLLLGAGESGKSTIVKQMRILHVVL----TSGIF----ETKFQVDKVNFHMF 52

Query: 62  DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEE 107
           D  GQ   R      +    A+I V   S         +    ++E
Sbjct: 53  DVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQE 98

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (185), Expect = 2e-16
 Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 1/116 (0%)

Query: 4   YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
              + K V+VG+  VGKTCL+  +    FP     T+  D    +V +  ++  L ++DT
Sbjct: 6   GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDT 64

Query: 64  AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           AGQE +  +    Y      ++ + +    +F  + +      +  +  V  +L+G
Sbjct: 65  AGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIG 120

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 4e-06
 Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 14/76 (18%)

Query: 190 EGHSNNIHCMARNKIDREDRE-------------IPTEVGEDFAKRH-DMYYLETSAKAS 235
           E   N    +   +ID  D               I  E G+  AK      Y+E SA   
Sbjct: 109 EYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQ 168

Query: 236 DNVEKLFMQIAAELME 251
             ++ +F +    ++ 
Sbjct: 169 KGLKTVFDEAIIAILT 184

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.0 bits (183), Expect = 2e-16
 Identities = 40/113 (35%), Positives = 59/113 (52%), Gaps = 2/113 (1%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +KVV++G+ GVGK+ L  +F  G F      TI  DF  K +E+++    L+I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 68  RFRSITQSYYRSAHALILVYDI-SCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
           +F S+   Y ++    ILVY + + Q   D      + I      KV  +LVG
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVG 115

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 3e-06
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 202 NKID-REDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
           NK+D   +RE+ +  G   A+     ++ETSAK+   V++LF +I  ++
Sbjct: 116 NKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.0 bits (183), Expect = 2e-16
 Identities = 48/101 (47%), Positives = 66/101 (65%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            KV L+G+ GVGK+ ++ RF +  F P    TIG  FM KTV+  NE  K  IWDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY 108
           RFR++   YYR + A I+VYDI+ + TF  L +W+RE+ ++
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH 105

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.2 bits (103), Expect = 9e-06
 Identities = 13/56 (23%), Positives = 27/56 (48%)

Query: 194 NNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
             +          + RE+     +D+A      ++ETSAK + N+ +LF++I+  +
Sbjct: 110 IVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 74.7 bits (182), Expect = 3e-16
 Identities = 21/112 (18%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           ++++VG    GKT ++ +   G        T           +  + I   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIV-----TTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGG 120
            R + + Y+++   LI V D + +   +   + L  +      +   +LV  
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFA 108

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 1e-05
 Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 196 IHCMARNKID---REDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
           +   A  +         EI  ++G    +  + Y   T A + D + +    ++ +L
Sbjct: 104 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.7 bits (182), Expect = 3e-16
 Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 2/154 (1%)

Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
             K+V+VG  GVGK+ L  +F Q  F          D   K   ++    +L I DTAGQ
Sbjct: 6   THKLVVVGGGGVGKSALTIQFIQSYFVSDY-DPTIEDSYTKICSVDGIPARLDILDTAGQ 64

Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVL-RVLVGGTSGLK 125
           E F ++ + Y R+ H  +LV+ I+ + +F+ +     +I           VLVG  + L+
Sbjct: 65  EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 124

Query: 126 IVNEMASAAGLLCTVDPALATALASDKTDLDEDE 159
              ++  +          +A   AS K  L+ DE
Sbjct: 125 SQRQVPRSEASAFGASHHVAYFEASAKLRLNVDE 158

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 183 CFYLASLEGHSNNIHCMARNKIDREDR-EIPTEVGEDFAKRHDMYYLETSAKASDNVEKL 241
              +  ++   +    +  NK D E + ++P      F   H + Y E SAK   NV++ 
Sbjct: 100 FTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA 159

Query: 242 FMQIAAELMEK 252
           F Q+   + + 
Sbjct: 160 FEQLVRAVRKY 170

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.3 bits (181), Expect = 5e-16
 Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 1/113 (0%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +++V+VG  GVGK+ L  +F Q  F      TI  D   K   I++   +L I DTAGQE
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQE 64

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGG 120
            F ++ + Y R+    +LV+ ++ + +F+ +  + R+I          +++ G
Sbjct: 65  EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIG 117

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 7e-05
 Identities = 12/55 (21%), Positives = 26/55 (47%)

Query: 198 CMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
            +         R++  E G+  A++  + Y+E SAK   NV++ F ++   + + 
Sbjct: 115 LIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKF 169

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.1 bits (178), Expect = 1e-15
 Identities = 25/111 (22%), Positives = 55/111 (49%), Gaps = 1/111 (0%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K+V+VG+   GKTCL+   ++  FP     T+  +  +  +E++ ++++L +WDTAG E
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLV 118
            +  +    Y     +++ + I    + + + +      ++    V  +LV
Sbjct: 62  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV 112

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 5e-06
 Identities = 18/76 (23%), Positives = 25/76 (32%), Gaps = 14/76 (18%)

Query: 190 EGHSNNIHCMARNKIDREDREI-------------PTEVGEDFAKRH-DMYYLETSAKAS 235
               N    +  NK D  + E                E G D A R     Y+E SAK  
Sbjct: 102 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 161

Query: 236 DNVEKLFMQIAAELME 251
           D V ++F       ++
Sbjct: 162 DGVREVFEMATRAALQ 177

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.7 bits (177), Expect = 2e-15
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 1/118 (0%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K V+VG+  VGKTCL+  +T   FP  +      D     V ++ + + L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPG-EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLK 125
            +  +    Y      ++ + +    +F+ +         +       +LVG    L+
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 122

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 14/74 (18%)

Query: 193 SNNIHCMARNKID-REDREIPTEV------------GEDFAKRH-DMYYLETSAKASDNV 238
            N    +   K+D R+D++   ++            G   AK    + YLE SA     +
Sbjct: 108 PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL 167

Query: 239 EKLFMQIAAELMEK 252
           + +F +    ++  
Sbjct: 168 KTVFDEAIRAVLCP 181

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 71.9 bits (175), Expect = 4e-15
 Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 5/113 (4%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            +++++G  G GKT ++ R   G     +  TIG +       ++ + +KL +WD  GQ 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNVET----LSYKNLKLNVWDLGGQT 72

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGG 120
             R   + YY    A+I V D + +      +  L  + +    +   +LV  
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFA 125

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 46.1 bits (108), Expect = 3e-06
 Identities = 11/93 (11%), Positives = 29/93 (31%), Gaps = 4/93 (4%)

Query: 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDRED----REIPTEVGEDF 219
            + +V           ++    +   E   +    +  NK D+       E+  E+    
Sbjct: 88  VIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVE 147

Query: 220 AKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
            K      + +SA   + + +    +   + E+
Sbjct: 148 LKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 180

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 71.1 bits (173), Expect = 5e-15
 Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 5/114 (4%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            +++++G    GKT ++ +   G        T           +  + +K  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSV-----TTIPTVGFNVETVTYKNVKFNVWDVGGQD 67

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGT 121
           + R + + YY     LI V D + +   D     L  I      +   +L+   
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 121

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 7e-06
 Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 4/91 (4%)

Query: 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEV----GED 218
             + +V  A         +    + +     + I  +  NK D  D   P E+    G  
Sbjct: 82  GLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 141

Query: 219 FAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
             +  + Y   + A + D + +    + +  
Sbjct: 142 RIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.8 bits (172), Expect = 9e-15
 Identities = 46/245 (18%), Positives = 82/245 (33%), Gaps = 70/245 (28%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V+VG++  GKT L+  F +  FP     T+  +    + EI+ +RI+L +WDT+G   
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVN 128
           + ++    Y  + A+++ +DIS   T D +    +   +        +LVG         
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVG--------- 113

Query: 129 EMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLAS 188
                                  K+DL  D   L                          
Sbjct: 114 ----------------------CKSDLRTDVSTLV------------------------- 126

Query: 189 LEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDN-VEKLFMQIAA 247
                   +         +   +  ++G          Y+E SA  S+N V  +F     
Sbjct: 127 -----ELSNHRQTPVSYDQGANMAKQIG-------AATYIECSALQSENSVRDIFHVATL 174

Query: 248 ELMEK 252
             + K
Sbjct: 175 ACVNK 179

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.7 bits (169), Expect = 2e-14
 Identities = 34/111 (30%), Positives = 63/111 (56%), Gaps = 1/111 (0%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +K+V+VG+ GVGK+ L  +F Q +F P    TI  D  +K  EI+N+   L + DTAGQE
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTI-EDSYLKHTEIDNQWAILDVLDTAGQE 63

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLV 118
            F ++ + Y R+    ++VY ++ + +F+ +  + + I      +   +++
Sbjct: 64  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMIL 114

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDRE-DREIPTEVGEDFAK 221
             L++  V         +     +  ++   +    +  NK+D    R++  + G++ A 
Sbjct: 78  GFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT 137

Query: 222 RHDMYYLETSAKASD-NVEKLFMQIAAELMEK 252
           ++++ Y+ETSAK    NV+K F  +   + ++
Sbjct: 138 KYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 169

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.6 bits (166), Expect = 4e-14
 Identities = 39/93 (41%), Positives = 68/93 (73%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K+V+VGN  VGK+ +++R+ +G+F      TIGVDF+ + +++N+E ++L +WDTAGQE 
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTDW 101
           F +IT++YYR A A +LV+  + + +F+ ++ W
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESFEAISSW 96

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (103), Expect = 9e-06
 Identities = 17/88 (19%), Positives = 30/88 (34%)

Query: 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH 223
             ++VF            +       E        +       +D  I  E  E  AKR 
Sbjct: 77  ACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRL 136

Query: 224 DMYYLETSAKASDNVEKLFMQIAAELME 251
            + +  TS K   NV ++F  +A + ++
Sbjct: 137 KLRFYRTSVKEDLNVSEVFKYLAEKHLQ 164

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.8 bits (167), Expect = 8e-14
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 7/102 (6%)

Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
           L K++L+G    GK+  +++        GQ  T G    I   +   + +  ++ D  GQ
Sbjct: 2   LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKG----IHEYDFEIKNVPFKMVDVGGQ 54

Query: 67  ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY 108
              R      + S  +++ +   S              + E 
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTES 96

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.7 bits (156), Expect = 8e-13
 Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 5/110 (4%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
           K++ +G    GKT L+             AT+   +   + E+    IK   +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 69  FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLV 118
            R + + Y+   + ++ + D +    FD     L  +   A  K +  ++
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVI 106

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 3/55 (5%), Positives = 17/55 (30%)

Query: 192 HSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA 246
             +  + ++  ++      + T   +    +  +     S    +   + F  ++
Sbjct: 110 KIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 164

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.7 bits (159), Expect = 9e-13
 Identities = 14/123 (11%), Positives = 37/123 (30%), Gaps = 17/123 (13%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K++L+G    GK+  +++            T G+         + + +  ++ D  GQ 
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEY----PFDLQSVIFRMVDVGGQR 56

Query: 68  RFRSITQSYYRSAHALILVYDISCQ-----------PTFDCLTDWLREIEEYASFKVLRV 116
             R      + +  +++ +  +S                +    +   I          +
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116

Query: 117 LVG 119
           L  
Sbjct: 117 LFL 119

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.7 bits (156), Expect = 1e-12
 Identities = 37/102 (36%), Positives = 56/102 (54%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           FK+VLVG+ G GKT  V+R   G F     AT+GV+        N   IK  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA 109
           +F  +   YY  A   I+++D++ + T+  + +W R++    
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC 105

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 2e-06
 Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 194 NNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
           N    +  NK+D +DR++  +    F ++ ++ Y + SAK++ N EK F+ +A +L+  
Sbjct: 107 NIPIVLCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 164

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 63.2 bits (152), Expect = 4e-12
 Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 5/101 (4%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            +++++G    GKT ++++F           TI          + +   KL IWD  GQ+
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDV-----DTISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY 108
             RS  ++Y+ S   LI V D + +         L+ +   
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVE 98

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 5/57 (8%), Positives = 14/57 (24%)

Query: 196 IHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
                          I   +  D  + H       SA   +++      +  ++  +
Sbjct: 109 FANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.1 bits (152), Expect = 6e-12
 Identities = 31/245 (12%), Positives = 65/245 (26%), Gaps = 53/245 (21%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K++L+G    GK+ +V++              G    I       + +  +++D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHEA-----GTG----IVETHFTFKDLHFKMFDVGGQR 53

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIV 127
             R      +    A+I    +S         + +  + E              +   I+
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113

Query: 128 NEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLA 187
                                         +E +    L +            EA  Y+ 
Sbjct: 114 ---------------------LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ 152

Query: 188 SLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA 247
                 N           ++ +EI              Y   T A  + NV+ +F  +  
Sbjct: 153 CQFEDLNK---------RKDTKEI--------------YTHFTCATDTKNVQFVFDAVTD 189

Query: 248 ELMEK 252
            +++ 
Sbjct: 190 VIIKN 194

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 1e-11
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 1/111 (0%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           ++V + G  GVGK+ LV RF +G F      T+  D   + +  +     LQI DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTV-EDTYRQVISCDKSICTLQITDTTGSH 61

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLV 118
           +F ++ +      HA ILVY I+ + + + L     +I E         ++
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIM 112

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 1e-05
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 2/95 (2%)

Query: 160 HVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCM-ARNKIDREDREI-PTEVGE 217
              A +L+  +               +  ++G   +I  M   NK D        +   E
Sbjct: 73  KGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAE 132

Query: 218 DFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
             A+     ++ETSAK + NV++LF ++      +
Sbjct: 133 ALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR 167

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 59.2 bits (142), Expect = 9e-11
 Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 5/101 (4%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            KV++VG    GKT ++ +F+       +             EI     +  +WD  GQE
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSM-----NEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQE 70

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY 108
             RS   +YY +   +I+V D + +       + L ++  +
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH 111

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 3e-06
 Identities = 7/55 (12%), Positives = 14/55 (25%)

Query: 195 NIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
                   K      EI   +     K H  +     A   + + +    + + L
Sbjct: 121 IFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.6 bits (143), Expect = 1e-10
 Identities = 23/115 (20%), Positives = 36/115 (31%), Gaps = 6/115 (5%)

Query: 9   KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
            V+ VG    GKT L  R   G +   Q  +I     I  V  N       I     +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 69  FRSITQSYYRSAHALILVYDISCQPTF-----DCLTDWLREIEEYASFKVLRVLV 118
              +   +  SA A++ V D +          + L   L +     +   L +  
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIAC 115

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (139), Expect = 2e-10
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 1/94 (1%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K+ ++G   VGK+ L  +F +G F      TI  +   K + +N +   LQ+ DTAGQ+
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI-ENTFTKLITVNGQEYHLQLVDTAGQD 63

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDW 101
            +    Q+Y    +  ILVY ++   +F+ +   
Sbjct: 64  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVI 97

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 16/72 (22%), Positives = 28/72 (38%)

Query: 179 RNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNV 238
           +      L  +      I  +   K    +R I  E G+  A+  +  +LE+SAK +   
Sbjct: 95  KVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTA 154

Query: 239 EKLFMQIAAELM 250
             +F +I  E  
Sbjct: 155 VDVFRRIILEAE 166

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 2e-10
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 2/94 (2%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            K+ + G AGVGK+ LV RF    F      T+          I++E + ++I DT   +
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTL-ESTYRHQATIDDEVVSMEILDT-AGQ 60

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDW 101
                 + + R     +LVYDI+ + +F+ +   
Sbjct: 61  EDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPL 94

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 191 GHSNNIHCMARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASD-NVEKLFMQIAAE 248
              N    +  NK D +  R++ TE GE  A      + E SA   + N+ ++F ++  E
Sbjct: 103 KPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCRE 162

Query: 249 LMEK 252
           +  +
Sbjct: 163 VRRR 166

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 56.9 bits (136), Expect = 5e-10
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 5/113 (4%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            +++L+G    GKT L+++            T    F IK+V+      KL +WD  GQ 
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDI---SHITPTQGFNIKSVQSQG--FKLNVWDIGGQR 71

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGG 120
           + R   +SY+ +   LI V D + +  F+     L E+ E      + VL+  
Sbjct: 72  KIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFA 124

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 5/44 (11%), Positives = 11/44 (25%)

Query: 206 REDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
               EI   +     +         SA   + V+     +   +
Sbjct: 133 APASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 2e-09
 Identities = 17/101 (16%), Positives = 44/101 (43%), Gaps = 7/101 (6%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            ++ ++G+A  GK+ L+ RF  G +   +      +   K + ++ +   + I + AG  
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQVLE--KTESEQYKKEMLVDGQTHLVLIREEAGAP 63

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY 108
             +     +   A A+I V+ +  + +F  ++    ++   
Sbjct: 64  DAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSL 99

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 1/63 (1%)

Query: 195 NIHCMARNKIDREDREIPTEVGEDFAKR-HDMYYLETSAKASDNVEKLFMQIAAELMEKL 253
            +            R +                Y ET A    NV+++F ++A +++   
Sbjct: 110 ALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLR 169

Query: 254 AEK 256
            ++
Sbjct: 170 KQQ 172

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (127), Expect = 7e-09
 Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 2/94 (2%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
           +KV+L+G  GVGK+ L R F       G  A        +++ ++ E   L ++D   Q+
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVED--GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQD 59

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDW 101
             R +         A ++VY ++ + +F+  ++ 
Sbjct: 60  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL 93

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 3e-06
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 197 HCMARNKIDR-EDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
             +  NK D    RE+  + G   A   D  ++ETSA    NV+ LF  +  ++  +
Sbjct: 108 IILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 164

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 2e-08
 Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 5/105 (4%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            +++++G  G GKT ++ R   G        T           +  + +K Q+WD  G  
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEV-----VTTIPTIGFNVETVTYKNLKFQVWDLGGLT 60

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFK 112
             R   + YY +  A+I V D   +         L  + E    +
Sbjct: 61  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELR 105

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 4e-06
 Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 4/93 (4%)

Query: 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDRED----REIPTEVGEDF 219
            + +V                 +   E     I  +  NK D E      E+   +G   
Sbjct: 76  VIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPA 135

Query: 220 AKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
            K       +TSA     +++    +   L  +
Sbjct: 136 LKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 168

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 2e-08
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 4/111 (3%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            ++ LVG    GKT  V     G F      T+G +       I    + +++WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK----ITKGNVTIKLWDIGGQP 58

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLV 118
           RFRS+ + Y R   A++ + D + Q   +   + L  + +    + + VLV
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLV 109

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 7e-04
 Identities = 5/41 (12%), Positives = 17/41 (41%)

Query: 206 REDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA 246
            +++E+  ++     +  ++     S K  DN++     + 
Sbjct: 120 LDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 160

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 51.2 bits (121), Expect = 6e-08
 Identities = 18/117 (15%), Positives = 41/117 (35%), Gaps = 5/117 (4%)

Query: 4   YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
           YK   K+V +G    GKT L+                       + E+    +    +D 
Sbjct: 10  YKKTGKLVFLGLDNAGKTTLLHMLKDDRLG-----QHVPTLHPTSEELTIAGMTFTTFDL 64

Query: 64  AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGG 120
            G  + R + ++Y  + + ++ + D +         + L  +    +   + +L+ G
Sbjct: 65  GGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILG 121

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 1e-06
 Identities = 19/116 (16%), Positives = 38/116 (32%), Gaps = 3/116 (2%)

Query: 7   LFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
            ++VVL+G  GVGK+ L   F             +G D   +T+ ++ E   + + D   
Sbjct: 3   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWE 62

Query: 66  QERFRSITQSYYRSAHALILVYDIS--CQPTFDCLTDWLREIEEYASFKVLRVLVG 119
            +        +        L+                 ++      +  +  +LVG
Sbjct: 63  NKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 118

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 4e-05
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 196 IHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
           I  +         RE+    G   A   D  ++ETSA    NV++LF  I  ++  +
Sbjct: 114 IILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 170

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.6 bits (109), Expect = 3e-06
 Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 11/104 (10%)

Query: 10  VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERF 69
           +++ G    GKT L+   T     P    T+     +   + +   +   + D  G  + 
Sbjct: 6   IIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLSAADYDGSGV--TLVDFPGHVKL 59

Query: 70  RSITQSYY-----RSAHALILVYDISCQPTFDCLTDWLREIEEY 108
           R     Y           + +V             ++L +I   
Sbjct: 60  RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSI 103

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (92), Expect = 3e-04
 Identities = 18/94 (19%), Positives = 27/94 (28%), Gaps = 1/94 (1%)

Query: 8   FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
            KVV+ G    GK+ L+     G          G    +    I+ + + L I DTAG  
Sbjct: 2   MKVVIAGRPNAGKSSLLNALA-GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR 60

Query: 68  RFRSITQSYYRSAHALILVYDISCQPTFDCLTDW 101
                 +          +          D  T  
Sbjct: 61  EASDEVERIGIERAWQEIEQADRVLFMVDGTTTD 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	730
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.97
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.97
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.97
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.97
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.96
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.96
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.96
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.96
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.96
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.96
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.96
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.95
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.95
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.92
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.91
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.91
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.91
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.9
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.89
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.83
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.83
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.83
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.82
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.82
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.79
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.79
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.78
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.76
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.72
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.71
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.7
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.7
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.68
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.67
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.66
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.65
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.64
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.54
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.52
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.49
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.42
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.41
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.4
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.35
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.31
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.25
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.22
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.04
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	98.99
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	98.91
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	98.88
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	98.87
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	98.84
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.77
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.64
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.54
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.52
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.46
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.35
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.31
d1mkya3	81	Probable GTPase Der, C-terminal domain {Thermotoga	98.3
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.09
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.04
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.0
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.82
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.61
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	96.33
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.11
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.11
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	95.84
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	95.37
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	95.35
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	94.75
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	94.57
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	94.55
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	94.01
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	93.9
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	93.82
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	93.77
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	93.63
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	93.33
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	93.3
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	93.25
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	93.17
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	93.08
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	93.06
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	93.01
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	92.96
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	92.79
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	92.64
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	92.62
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	92.5
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	92.17
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	92.01
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	91.82
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	91.77
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	91.53
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	91.32
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	91.28
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	91.21
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	90.88
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	90.86
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	90.84
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	90.74
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	90.66
d1g2912	240	Maltose transport protein MalK, N-terminal domain	90.59
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	90.55
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	90.53
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	90.5
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	90.45
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	90.37
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	90.3
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	90.19
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	89.96
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	89.56
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	89.49
d2awna2	232	Maltose transport protein MalK, N-terminal domain	89.44
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	89.41
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	89.41
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	89.39
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	89.3
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	89.24
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	89.24
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	89.23
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	89.07
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	88.96
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	88.7
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	88.39
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	88.24
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	87.84
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	87.83
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	87.75
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	87.55
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	87.4
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	87.36
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	87.23
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	86.96
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	86.58
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	85.7
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	85.42
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	85.4
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	85.25
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	85.25
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	85.18
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	85.06
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	84.76
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	83.78
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	83.24
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	83.09
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	82.77
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	82.54
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	82.41
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	82.15
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	81.61
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	81.51
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	81.44
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	81.31
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	80.99
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	80.99
d1okkd2	207	GTPase domain of the signal recognition particle r	80.78
d2qy9a2	211	GTPase domain of the signal recognition particle r	80.65
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	80.57
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	80.25
d1j8yf2	211	GTPase domain of the signal sequence recognition p	80.22
d1vmaa2	213	GTPase domain of the signal recognition particle r	80.19

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=4.5e-31  Score=251.68  Aligned_cols=168  Identities=38%  Similarity=0.750  Sum_probs=152.5

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      +|++.+||+++|++|||||||+++|.++.+...+.++.+.+.....+...+..+.+++|||||++++..++..++++||+
T Consensus         1 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~   80 (169)
T d3raba_           1 NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMG   80 (169)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCE
T ss_pred             CCCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +|+|||++++++++.+..|+..+....                               .++.|++++|||+|+.+     
T Consensus        81 ~ilv~d~~~~~s~~~~~~~~~~~~~~~-------------------------------~~~~~iivv~nK~D~~~-----  124 (169)
T d3raba_          81 FILMYDITNEESFNAVQDWSTQIKTYS-------------------------------WDNAQVLLVGNKCDMED-----  124 (169)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHC-------------------------------CSCCEEEEEEECTTCGG-----
T ss_pred             EEEEEECccchhhhhhhhhhhhhhccc-------------------------------CCcceEEEEEeeccccc-----
Confidence            999999999999999999988776543                               25667788888888752     


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF  242 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF  242 (730)
                                                                   .+.++.++++++++.+|++|+||||++|.||+++|
T Consensus       125 ---------------------------------------------~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f  159 (169)
T d3raba_         125 ---------------------------------------------ERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF  159 (169)
T ss_dssp             ---------------------------------------------GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             ---------------------------------------------ccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHH
Confidence                                                         25688899999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy17467        243 MQIAAELME  251 (730)
Q Consensus       243 e~Li~~l~e  251 (730)
                      ++|++.+.+
T Consensus       160 ~~l~~~i~e  168 (169)
T d3raba_         160 ERLVDVICE  168 (169)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhh
Confidence            999998754

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=3.4e-31  Score=251.01  Aligned_cols=162  Identities=36%  Similarity=0.680  Sum_probs=149.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||+++|++|||||||++||+++.|...+.||++.+........++..+.+.+||++|+.++..++..+++++|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||++++.||+++..|++++.+..                                ++.|+++||||+|+.+         
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~--------------------------------~~~~iilVgnK~Dl~~---------  120 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEV--------------------------------GDIPTALVQNKIDLLD---------  120 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHH--------------------------------CSCCEEEEEECGGGGG---------
T ss_pred             EeccchhhhhhcccccccccccC--------------------------------CCceEEEeeccCCccc---------
Confidence            99999999999999999997754                                4577888888888752         


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                                               +++++.++++++|+.++++|+||||++|.||+++|+.|+
T Consensus       121 -----------------------------------------~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~  159 (164)
T d1z2aa1         121 -----------------------------------------DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA  159 (164)
T ss_dssp             -----------------------------------------GCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred             -----------------------------------------ceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHH
Confidence                                                     357888999999999999999999999999999999999


Q ss_pred             HHHH
Q psy17467        247 AELM  250 (730)
Q Consensus       247 ~~l~  250 (730)
                      +.++
T Consensus       160 ~~~l  163 (164)
T d1z2aa1         160 EKHL  163 (164)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8875

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-30  Score=247.44  Aligned_cols=165  Identities=41%  Similarity=0.816  Sum_probs=150.3

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI   83 (730)
                      |++.+||+|+|++|||||||++||+++.+...+.++.+.++......+++..+.+++||++|++.+..++..+++++|++
T Consensus         1 ~~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~   80 (166)
T d1z0fa1           1 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   80 (166)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             CcEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEE
Confidence            67899999999999999999999999999999989999899999999999999999999999999999999999999999


Q ss_pred             EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      |+|||+++++||+.+..|+..+.+...                               +..|++++|||+|+.+      
T Consensus        81 ilv~d~~~~~s~~~~~~~~~~~~~~~~-------------------------------~~~~iilvgnK~Dl~~------  123 (166)
T d1z0fa1          81 LMVYDITRRSTYNHLSSWLTDARNLTN-------------------------------PNTVIILIGNKADLEA------  123 (166)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSC-------------------------------TTCEEEEEEECTTCGG------
T ss_pred             EEEeccCchHHHHHHHHHHHHHHhhcc-------------------------------ccceEEEEcccccchh------
Confidence            999999999999999999998876542                               4567778888888752      


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM  243 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe  243 (730)
                                                                  .+.++.++++.+++..+++|+||||++|.||+++|+
T Consensus       124 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~  159 (166)
T d1z0fa1         124 --------------------------------------------QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL  159 (166)
T ss_dssp             --------------------------------------------GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             --------------------------------------------hcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence                                                        245778899999999999999999999999999999


Q ss_pred             HHHHHH
Q psy17467        244 QIAAEL  249 (730)
Q Consensus       244 ~Li~~l  249 (730)
                      .|++.+
T Consensus       160 ~i~~~i  165 (166)
T d1z0fa1         160 EAAKKI  165 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999875

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-30  Score=248.33  Aligned_cols=169  Identities=72%  Similarity=1.200  Sum_probs=152.9

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      +|++.+||+++|++|||||||+++|+++.|...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|+
T Consensus         1 ~~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~   80 (171)
T d2ew1a1           1 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA   80 (171)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccce
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +++|||++++.+|+.+.+|+..+.+...                               .+.|++|||||+|+.+     
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-------------------------------~~~~~ilvgnK~D~~~-----  124 (171)
T d2ew1a1          81 LILTYDITCEESFRCLPEWLREIEQYAS-------------------------------NKVITVLVGNKIDLAE-----  124 (171)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSC-------------------------------TTCEEEEEEECGGGGG-----
T ss_pred             EEEeeecccchhhhhhhhhhhhhccccc-------------------------------ccccEEEEEeeccccc-----
Confidence            9999999999999999999998876542                               4566777778887642     


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF  242 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF  242 (730)
                                                                   .+.++.++++.+++..+++|++|||++|.||+++|
T Consensus       125 ---------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f  159 (171)
T d2ew1a1         125 ---------------------------------------------RREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF  159 (171)
T ss_dssp             ---------------------------------------------GCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             ---------------------------------------------ccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHH
Confidence                                                         25678899999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy17467        243 MQIAAELMEK  252 (730)
Q Consensus       243 e~Li~~l~e~  252 (730)
                      ..|++.+++.
T Consensus       160 ~~l~~~l~~~  169 (171)
T d2ew1a1         160 LDLACRLISE  169 (171)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999887553

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8e-31  Score=254.10  Aligned_cols=177  Identities=24%  Similarity=0.408  Sum_probs=151.8

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI   83 (730)
                      ....+||+|+|++|||||||++||+++.|...+.||++ +...+.+.+++..+.+++||++|++.+..++..+++++|++
T Consensus         6 ~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~   84 (185)
T d2atxa1           6 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   84 (185)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhccccccee
Confidence            36789999999999999999999999999999999997 56677888899999999999999999999999999999999


Q ss_pred             EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      |+|||+++++||+++..|+..+.+..                               .+++|+++||||+|+.++.....
T Consensus        85 ilv~d~t~~~Sf~~~~~~~~~~~~~~-------------------------------~~~~~~ilvgnK~Dl~~~~~~~~  133 (185)
T d2atxa1          85 LICFSVVNPASFQNVKEEWVPELKEY-------------------------------APNVPFLLIGTQIDLRDDPKTLA  133 (185)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH-------------------------------STTCCEEEEEECTTSTTCHHHHH
T ss_pred             eeccccchHHHHHHHHHHHHHHHHhc-------------------------------CCCCCeeEeeeccccccchhhhh
Confidence            99999999999998876554443322                               15788999999999987543211


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC-CeEEEEecCCCCChHHHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYLETSAKASDNVEKLF  242 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg-~~fvEtSAktG~GVeeLF  242 (730)
                                                            ...|...|.|+.++++++|+.+| +.|+||||++|.||+++|
T Consensus       134 --------------------------------------~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SAk~~~gv~e~F  175 (185)
T d2atxa1         134 --------------------------------------RLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF  175 (185)
T ss_dssp             --------------------------------------HHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHH
T ss_pred             --------------------------------------hhhhcccccccHHHHHHHHHHcCCCEEEEecCCCCcCHHHHH
Confidence                                                  12344568899999999999998 689999999999999999


Q ss_pred             HHHHHHHH
Q psy17467        243 MQIAAELM  250 (730)
Q Consensus       243 e~Li~~l~  250 (730)
                      +.++++++
T Consensus       176 ~~li~~il  183 (185)
T d2atxa1         176 DEAIIAIL  183 (185)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            99998874

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-30  Score=250.10  Aligned_cols=169  Identities=30%  Similarity=0.480  Sum_probs=150.4

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      +....+||+|+|++|||||||++||+++.|...+.|+.+ +.....+.+++..+.+.+||++|++++...+..+++++|+
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~   80 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   80 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc-cceeeEeccCCeeeeeeccccccccccccccchhhcccee
Confidence            456789999999999999999999999999998888765 6777889999999999999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +|+|||++++.||+.+..|+..+.+..                              ...+.|++|||||+|+.+     
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~p~ilvgnK~Dl~~-----  125 (173)
T d2fn4a1          81 FLLVFAINDRQSFNEVGKLFTQILRVK------------------------------DRDDFPVVLVGNKADLES-----  125 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHH------------------------------TSSCCCEEEEEECGGGGG-----
T ss_pred             eeeecccccccccchhhhhhHHHHHHh------------------------------ccCCCceEEEEEeechhh-----
Confidence            999999999999999999999987653                              125678888888888752     


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF  242 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF  242 (730)
                                                                   .+.++.++++.+|+.++++|+||||++|.||+++|
T Consensus       126 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f  160 (173)
T d2fn4a1         126 ---------------------------------------------QRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  160 (173)
T ss_dssp             ---------------------------------------------GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             ---------------------------------------------ccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHH
Confidence                                                         35678899999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy17467        243 MQIAAELMEK  252 (730)
Q Consensus       243 e~Li~~l~e~  252 (730)
                      +.|++.+.+.
T Consensus       161 ~~l~~~i~k~  170 (173)
T d2fn4a1         161 EQLVRAVRKY  170 (173)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988543

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.97  E-value=9.5e-31  Score=249.83  Aligned_cols=164  Identities=31%  Similarity=0.542  Sum_probs=145.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      +++||+|+|++|||||||++||+++.|...+.||++.++ .+.+.+++..+.+++||++|++++..++..+++++|++|+
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            468999999999999999999999999999999998554 5678899999999999999999999999999999999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      |||++++.||+.+..|++++.+..                              ..+++|+++||||+|+.+        
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~piiivgnK~Dl~~--------  123 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVK------------------------------EDENVPFLLVGNKSDLED--------  123 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHH------------------------------CCTTSCEEEEEECGGGGG--------
T ss_pred             EeeccchhhhhhHHHHHHHHHHhh------------------------------CCCCCcEEEEeccccccc--------
Confidence            999999999999999999987653                              235778888888888742        


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L  245 (730)
                                                                .++++.++++++++.++++|+||||++|.||+++|+.|
T Consensus       124 ------------------------------------------~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  161 (168)
T d1u8za_         124 ------------------------------------------KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             ------------------------------------------GCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             ------------------------------------------cccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence                                                      36789999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy17467        246 AAELM  250 (730)
Q Consensus       246 i~~l~  250 (730)
                      ++.+.
T Consensus       162 ~~~i~  166 (168)
T d1u8za_         162 MREIR  166 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98874

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-30  Score=248.29  Aligned_cols=166  Identities=23%  Similarity=0.368  Sum_probs=132.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+++|++|||||||+++|.+..+... .++.+ +.+.+.+.+++..+.+.+||++|++++..++..+++++|++|+||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~-~~~~~-~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAG-HTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------C-EEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCc-CCeee-eeecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            7999999999999999999998876543 35554 555678889999999999999999999999999999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |++++.||+++..|+.++....                              ...+.|+++||||+|+.+          
T Consensus        80 d~t~~~s~~~~~~~~~~i~~~~------------------------------~~~~~piilvgnK~Dl~~----------  119 (168)
T d2gjsa1          80 SVTDKGSFEKASELRVQLRRAR------------------------------QTDDVPIILVGNKSDLVR----------  119 (168)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHC------------------------------C--CCCEEEEEECTTCGG----------
T ss_pred             cccccccccccccccchhhccc------------------------------ccccceEEEeecccchhh----------
Confidence            9999999999999999987653                              125678888888888853          


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA  247 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~  247 (730)
                                                              .++++.++++++++.+|++|+||||++|.||+++|+.|++
T Consensus       120 ----------------------------------------~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~  159 (168)
T d2gjsa1         120 ----------------------------------------SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR  159 (168)
T ss_dssp             ----------------------------------------GCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             ----------------------------------------hcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence                                                    3578899999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy17467        248 ELMEKLAE  255 (730)
Q Consensus       248 ~l~e~~~~  255 (730)
                      .+..++.+
T Consensus       160 ~i~~~~~~  167 (168)
T d2gjsa1         160 QIRLRRDS  167 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhhC
Confidence            88665543

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-30  Score=247.44  Aligned_cols=164  Identities=34%  Similarity=0.676  Sum_probs=142.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      |.+||+|+|++|||||||++||+++.|...+.||.+.+...+.+..++..+.+++||++|+.++..++..+++++|++|+
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      |||+++++||+++..|+..+.....                               ...|++|||||+|+.+        
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~-------------------------------~~~~~ilvgnK~Dl~~--------  122 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLG-------------------------------NEICLCIVGNKIDLEK--------  122 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHG-------------------------------GGSEEEEEEECGGGGG--------
T ss_pred             EEeCCchhHHHhhhhhhhhcccccc-------------------------------cccceeeecccccccc--------
Confidence            9999999999999999988766543                               3456666677777642        


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L  245 (730)
                                                                ++.|+.++++++|+.++++|+||||++|.||+++|+.|
T Consensus       123 ------------------------------------------~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l  160 (167)
T d1z08a1         123 ------------------------------------------ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL  160 (167)
T ss_dssp             ------------------------------------------GCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             ------------------------------------------ccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHH
Confidence                                                      36789999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy17467        246 AAELM  250 (730)
Q Consensus       246 i~~l~  250 (730)
                      ++.++
T Consensus       161 ~~~i~  165 (167)
T d1z08a1         161 CKRMI  165 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98875

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-30  Score=247.05  Aligned_cols=164  Identities=27%  Similarity=0.429  Sum_probs=147.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      ..+||+|+|++|||||||+++|+++.|...+.||++.++ ...+.+++..+.+++||++|.+.+..++..+++++|++|+
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            358999999999999999999999999999999998664 6788899999999999999999999999999999999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      |||+++++||+.+..|+..+.+..                              ..+++|++|||||+|+.+        
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~piilvgnK~Dl~~--------  123 (167)
T d1xtqa1          82 VYSVTSIKSFEVIKVIHGKLLDMV------------------------------GKVQIPIMLVGNKKDLHM--------  123 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHH------------------------------CSSCCCEEEEEECTTCGG--------
T ss_pred             hcccchhhhhhhhhhhhhhhhhcc------------------------------cccccceeeecccccccc--------
Confidence            999999999999999999987654                              225678888888888852        


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L  245 (730)
                                                                ++.|+.++++++|+.++++|+||||++|.||+++|+.|
T Consensus       124 ------------------------------------------~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~l  161 (167)
T d1xtqa1         124 ------------------------------------------ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI  161 (167)
T ss_dssp             ------------------------------------------GCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHH
T ss_pred             ------------------------------------------ccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence                                                      36788999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy17467        246 AAELM  250 (730)
Q Consensus       246 i~~l~  250 (730)
                      ++.+.
T Consensus       162 i~~~~  166 (167)
T d1xtqa1         162 ILEAE  166 (167)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            98763

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.6e-30  Score=247.01  Aligned_cols=165  Identities=31%  Similarity=0.549  Sum_probs=147.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      +++||+++|++|||||||+++|+++.+...+.|+.+ +.+.+.+.+++..+.+++||++|++.+..++..+++++|++++
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ll   81 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   81 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCC-EEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCccee-eccccccccccccccccccccccccccccchhhhhhhccEEEE
Confidence            469999999999999999999999999999989987 4557778899999999999999999999999999999999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      |||++|++||+++..|+.++.+...                              ..+.|++++|||+|+.         
T Consensus        82 v~d~~d~~Sf~~~~~~~~~i~~~~~------------------------------~~~~p~ilvgnK~Dl~---------  122 (169)
T d1x1ra1          82 VYSVTDKASFEHVDRFHQLILRVKD------------------------------RESFPMILVANKVDLM---------  122 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHT------------------------------SSCCCEEEEEECTTCS---------
T ss_pred             ecccccchhhhccchhhHHHHhhcc------------------------------ccCccEEEEecccchh---------
Confidence            9999999999999999999877541                              2456777788888875         


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCC-ChHHHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASD-NVEKLFMQ  244 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~-GVeeLFe~  244 (730)
                                                               ..+.++.++++++|+.++++|+||||++|. ||+++|..
T Consensus       123 -----------------------------------------~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~  161 (169)
T d1x1ra1         123 -----------------------------------------HLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHD  161 (169)
T ss_dssp             -----------------------------------------TTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHH
T ss_pred             -----------------------------------------hhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHH
Confidence                                                     236789999999999999999999999986 99999999


Q ss_pred             HHHHHHH
Q psy17467        245 IAAELME  251 (730)
Q Consensus       245 Li~~l~e  251 (730)
                      |++.+.+
T Consensus       162 l~~~i~~  168 (169)
T d1x1ra1         162 LVRVIRQ  168 (169)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998854

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.1e-30  Score=245.74  Aligned_cols=174  Identities=25%  Similarity=0.441  Sum_probs=147.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      ..||+|+|++|||||||++||+++.|...+.||++ +.......+++..+.+++||++|++.+..++..+++++|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            47999999999999999999999999999999987 66677888899999999999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||+++++||+++..|+..+....                               .++.|++|||||+|+.+........ 
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~-------------------------------~~~~piilvgnK~Dl~~~~~~~~~~-  128 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHF-------------------------------CPNVPIILVGNKKDLRNDEHTRREL-  128 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHH-------------------------------STTSCEEEEEECGGGTTCHHHHHHH-
T ss_pred             cccchhHHHHHHHHHHHHHHHHh-------------------------------CCCCceEEeeecccccchhhHHHHH-
Confidence            99999999999887655543332                               2578999999999997643321110 


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe~L  245 (730)
                                                           .+...+.++.++++.+|+.+++ +|+||||++|.||+++|+.+
T Consensus       129 -------------------------------------~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt~~gi~e~F~~i  171 (177)
T d1kmqa_         129 -------------------------------------AKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA  171 (177)
T ss_dssp             -------------------------------------HHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred             -------------------------------------HHhhcccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHH
Confidence                                                 0113467899999999999985 89999999999999999999


Q ss_pred             HHHHH
Q psy17467        246 AAELM  250 (730)
Q Consensus       246 i~~l~  250 (730)
                      ++.++
T Consensus       172 ~~~~l  176 (177)
T d1kmqa_         172 TRAAL  176 (177)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99875

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4e-30  Score=242.87  Aligned_cols=161  Identities=43%  Similarity=0.715  Sum_probs=147.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+|+|++|||||||++||+++++...+.|+++.+........++..+.+.+||++|++.+...+..+++++|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            69999999999999999999999999999999998888889999999999999999999999999999999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |++++.||+++..|+.++.....                               ++.|+++||||+|+.+          
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~-------------------------------~~~~iilvgnK~Dl~~----------  119 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERG-------------------------------SDVIIMLVGNKTDLAD----------  119 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHT-------------------------------TSSEEEEEEECTTCGG----------
T ss_pred             ccccccchhhhHhhHHHHHHhcC-------------------------------CCceEEEEecccchhh----------
Confidence            99999999999999999876542                               4677788888888753          


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA  247 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~  247 (730)
                                                              .+.+..++++++++.++++|+||||++|.||+++|++|++
T Consensus       120 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~  159 (164)
T d1yzqa1         120 ----------------------------------------KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA  159 (164)
T ss_dssp             ----------------------------------------GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             ----------------------------------------hhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHH
Confidence                                                    2467788999999999999999999999999999999998


Q ss_pred             HH
Q psy17467        248 EL  249 (730)
Q Consensus       248 ~l  249 (730)
                      .+
T Consensus       160 ~l  161 (164)
T d1yzqa1         160 AL  161 (164)
T ss_dssp             HS
T ss_pred             hh
Confidence            75

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.5e-30  Score=244.50  Aligned_cols=171  Identities=44%  Similarity=0.804  Sum_probs=154.4

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      .|++++||+|+|++|||||||++||.++.+...+.|+.+.+.....+..++..+.+++|||+|++++..++..+++++|+
T Consensus         1 ~~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   80 (174)
T d2bmea1           1 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG   80 (174)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred             CccEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCE
Confidence            47899999999999999999999999999999999999988888888889999999999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +|+|||.+++++|+.+..|+..+.....                               ++.|+++||||+|+..     
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------------------------~~~piivv~nK~D~~~-----  124 (174)
T d2bmea1          81 ALLVYDITSRETYNALTNWLTDARMLAS-------------------------------QNIVIILCGNKKDLDA-----  124 (174)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSC-------------------------------TTCEEEEEEECGGGGG-----
T ss_pred             EEEEEecccchhHHHHhhhhcccccccC-------------------------------CceEEEEEEecccccc-----
Confidence            9999999999999999999999876542                               5677888888888742     


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF  242 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF  242 (730)
                                                                   ++.+..+++.++++..+++|+||||++|.||+++|
T Consensus       125 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f  159 (174)
T d2bmea1         125 ---------------------------------------------DREVTFLEASRFAQENELMFLETSALTGENVEEAF  159 (174)
T ss_dssp             ---------------------------------------------GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             ---------------------------------------------hhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHH
Confidence                                                         24677889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy17467        243 MQIAAELMEKLA  254 (730)
Q Consensus       243 e~Li~~l~e~~~  254 (730)
                      +++++.+.++..
T Consensus       160 ~~l~~~i~~~~~  171 (174)
T d2bmea1         160 VQCARKILNKIE  171 (174)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999876543

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-30  Score=250.77  Aligned_cols=173  Identities=34%  Similarity=0.648  Sum_probs=151.9

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCC----------eEEEEEEEeCCCchhhhhh
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINN----------ERIKLQIWDTAGQERFRSI   72 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg----------~~v~LqLwDTpG~e~~~sl   72 (730)
                      +|++++||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++          ..+.+.+|||+|++++..+
T Consensus         1 ~~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~   80 (186)
T d2f7sa1           1 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL   80 (186)
T ss_dssp             CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHH
Confidence            589999999999999999999999999999999889988888777776643          3578999999999999999


Q ss_pred             hHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccC
Q psy17467         73 TQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDK  152 (730)
Q Consensus        73 ~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK  152 (730)
                      +..++++||++|+|||++++.+|+.+..|+.++...                              ...++.|++|||||
T Consensus        81 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~------------------------------~~~~~~~iilv~nK  130 (186)
T d2f7sa1          81 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN------------------------------AYCENPDIVLIGNK  130 (186)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCC------------------------------CTTTCCEEEEEEEC
T ss_pred             HHHHHhcCCEEEEEEeccccccceeeeeccchhhhh------------------------------ccCCCceEEEEeee
Confidence            999999999999999999999999999998876432                              12356788888888


Q ss_pred             CCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEec
Q psy17467        153 TDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSA  232 (730)
Q Consensus       153 ~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSA  232 (730)
                      +|+.+                                                  .+.++.+++.++++.+|++|+||||
T Consensus       131 ~Dl~~--------------------------------------------------~~~v~~~e~~~~~~~~~~~~~e~Sa  160 (186)
T d2f7sa1         131 ADLPD--------------------------------------------------QREVNERQARELADKYGIPYFETSA  160 (186)
T ss_dssp             TTCGG--------------------------------------------------GCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred             ccchh--------------------------------------------------hhcchHHHHHHHHHHcCCEEEEEeC
Confidence            88852                                                  3578999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHHHHHHHH
Q psy17467        233 KASDNVEKLFMQIAAELMEKLAE  255 (730)
Q Consensus       233 ktG~GVeeLFe~Li~~l~e~~~~  255 (730)
                      ++|.||+++|+.+++.+.++..+
T Consensus       161 k~~~~i~e~f~~l~~~i~~k~~~  183 (186)
T d2f7sa1         161 ATGQNVEKAVETLLDLIMKRMEQ  183 (186)
T ss_dssp             TTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999766544

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.5e-30  Score=244.83  Aligned_cols=163  Identities=28%  Similarity=0.425  Sum_probs=143.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||+++|++|||||||++||+++.|...+.||++. .+.....+++..+.+.+||++|++.+...+..++++||++|+|
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~-~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED-TYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCE-EEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceee-ccccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            489999999999999999999999999999999984 4466778899999999999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||+++++||+.+..|+..+.+...                             ..++.|++|||||+|+.+         
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~-----------------------------~~~~~piilVgnK~Dl~~---------  122 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIKG-----------------------------DVESIPIMLVGNKCDESP---------  122 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC--------------------------------CCCEEEEEECGGGGG---------
T ss_pred             eecccccchhcccchhhhhhhhhc-----------------------------cCCCCcEEEEeecccccc---------
Confidence            999999999999999998876531                             125678888888888742         


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                                               .++++.++++++|+.++++|+||||++|.||+++|+.|+
T Consensus       123 -----------------------------------------~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~  161 (171)
T d2erxa1         123 -----------------------------------------SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL  161 (171)
T ss_dssp             -----------------------------------------GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             -----------------------------------------cccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHH
Confidence                                                     367889999999999999999999999999999999998


Q ss_pred             HHH
Q psy17467        247 AEL  249 (730)
Q Consensus       247 ~~l  249 (730)
                      +.+
T Consensus       162 ~~~  164 (171)
T d2erxa1         162 NLE  164 (171)
T ss_dssp             HTC
T ss_pred             HHH
Confidence            755

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1e-29  Score=242.27  Aligned_cols=162  Identities=30%  Similarity=0.548  Sum_probs=142.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+|+|++|||||||++||+++.|...+.||.+ +.....+.+++..+.+++||++|..++...+..+++.||++++||
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~   84 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVF   84 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEEee
Confidence            8999999999999999999999999999989887 677888899999999999999999999999999999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |++++.||+.+..|+.++.+...                              ....|++|||||+|+.           
T Consensus        85 d~~~~~s~~~~~~~~~~~~~~~~------------------------------~~~~p~ilvgnK~Dl~-----------  123 (171)
T d2erya1          85 SVTDRGSFEEIYKFQRQILRVKD------------------------------RDEFPMILIGNKADLD-----------  123 (171)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHT------------------------------SSCCSEEEEEECTTCT-----------
T ss_pred             ccccccchhhHHHHhHHHHhhcc------------------------------cCCCCEEEEEeccchh-----------
Confidence            99999999999999998876541                              2456777888888874           


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA  247 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~  247 (730)
                                                             ..+.++.++++++++.++++|+||||++|.||+++|..|++
T Consensus       124 ---------------------------------------~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~  164 (171)
T d2erya1         124 ---------------------------------------HQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVR  164 (171)
T ss_dssp             ---------------------------------------TSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             ---------------------------------------hhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHHHH
Confidence                                                   23578889999999999999999999999999999999999


Q ss_pred             HHH
Q psy17467        248 ELM  250 (730)
Q Consensus       248 ~l~  250 (730)
                      .+.
T Consensus       165 ~i~  167 (171)
T d2erya1         165 VIR  167 (171)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            874

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1e-29  Score=243.15  Aligned_cols=169  Identities=46%  Similarity=0.830  Sum_probs=147.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      |++||+|+|++|||||||++||+++++...+.++.+.+.........+..+.+.+||++|++.+..++..+++++|++|+
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            67999999999999999999999999999988888888888888899999999999999999999999999999999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      |||++++.||+.+..|+..+.+...                               ++.|++|||||+|+..        
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~~~~-------------------------------~~~piilv~nK~D~~~--------  122 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQHSS-------------------------------SNMVIMLIGNKSDLES--------  122 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSC-------------------------------TTCEEEEEEECTTCGG--------
T ss_pred             EEeecChHHHHhHHHHHHHHHHhCC-------------------------------CCCeEEEEecCCchhh--------
Confidence            9999999999999999998876542                               4667788888888752        


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L  245 (730)
                                                                .+.+..++++.+++..+++|+||||++|.||+++|..+
T Consensus       123 ------------------------------------------~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i  160 (173)
T d2a5ja1         123 ------------------------------------------RRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINT  160 (173)
T ss_dssp             ------------------------------------------GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHH
T ss_pred             ------------------------------------------hhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence                                                      24677889999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy17467        246 AAELMEKLAE  255 (730)
Q Consensus       246 i~~l~e~~~~  255 (730)
                      ++.+.++..+
T Consensus       161 ~~~i~~~~~~  170 (173)
T d2a5ja1         161 AKEIYRKIQQ  170 (173)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            9998765443

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.7e-29  Score=239.88  Aligned_cols=162  Identities=41%  Similarity=0.743  Sum_probs=147.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||+|+|++|||||||++||.++.|...+.||.+..........++....+.+||++|++++..++..+++++|++|+|
T Consensus         4 ~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   83 (167)
T d1z0ja1           4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIV   83 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEEE
Confidence            58999999999999999999999999999999999888888888999999999999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||+++++||+.+..|+..+.....                               ++.|+++||||+|+.+         
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~-------------------------------~~~~iilvgnK~Dl~~---------  123 (167)
T d1z0ja1          84 YDITKEETFSTLKNWVRELRQHGP-------------------------------PSIVVAIAGNKCDLTD---------  123 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSC-------------------------------TTSEEEEEEECTTCGG---------
T ss_pred             eeechhhhhhhHHHhhhhhhhccC-------------------------------CcceEEEecccchhcc---------
Confidence            999999999999999988766542                               5677788888888742         


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                                               .+.++.++++++|+.++++|+||||++|.||+++|..|+
T Consensus       124 -----------------------------------------~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l~  162 (167)
T d1z0ja1         124 -----------------------------------------VREVMERDAKDYADSIHAIFVETSAKNAININELFIEIS  162 (167)
T ss_dssp             -----------------------------------------GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             -----------------------------------------ccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence                                                     367888999999999999999999999999999999998


Q ss_pred             HHH
Q psy17467        247 AEL  249 (730)
Q Consensus       247 ~~l  249 (730)
                      +.+
T Consensus       163 ~~i  165 (167)
T d1z0ja1         163 RRI  165 (167)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            875

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.9e-29  Score=241.66  Aligned_cols=168  Identities=42%  Similarity=0.773  Sum_probs=148.8

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI   83 (730)
                      +|+++||+|||++|||||||++||+++.+...+.++.+.+.....+.+++..+.+.+||++|++++...+..+++++|++
T Consensus         1 ~~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~   80 (175)
T d2f9la1           1 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA   80 (175)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeE
Confidence            58899999999999999999999999999999989998888899999999999999999999999999999999999999


Q ss_pred             EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      |+|||++++.||+.+.+|+..+.++..                               +++|+++||||+|+.+      
T Consensus        81 i~v~d~~~~~S~~~~~~~~~~i~~~~~-------------------------------~~~piilvgnK~Dl~~------  123 (175)
T d2f9la1          81 LLVYDIAKHLTYENVERWLKELRDHAD-------------------------------SNIVIMLVGNKSDLRH------  123 (175)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSC-------------------------------TTCEEEEEEECTTCGG------
T ss_pred             EEEEECCCcccchhHHHHHHHHHHhcC-------------------------------CCCcEEEEEeeecccc------
Confidence            999999999999999999999877542                               5678888889998853      


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM  243 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe  243 (730)
                                                                  .+....+.+..+++..+++|+||||++|.||+++|+
T Consensus       124 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~  159 (175)
T d2f9la1         124 --------------------------------------------LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFK  159 (175)
T ss_dssp             --------------------------------------------GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             --------------------------------------------cccchHHHHHHhhcccCceEEEEecCCCcCHHHHHH
Confidence                                                        134566778888999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy17467        244 QIAAELMEK  252 (730)
Q Consensus       244 ~Li~~l~e~  252 (730)
                      .+++.+.+.
T Consensus       160 ~l~~~i~~~  168 (175)
T d2f9la1         160 NILTEIYRI  168 (175)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988543

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.7e-30  Score=247.11  Aligned_cols=161  Identities=32%  Similarity=0.620  Sum_probs=139.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      ..+||+++|++|||||||+++|+++.|...+.||++.++..+.+..++..+.+.+||++|+..+..++..+++++|++++
T Consensus         2 ~~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1i2ma_           2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII   81 (170)
T ss_dssp             EEEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhh
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      |||+++++||+++..|+.++.+..                                +++|+++||||+|+.+        
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~--------------------------------~~~piilvgnK~Dl~~--------  121 (170)
T d1i2ma_          82 MFDVTSRVTYKNVPNWHRDLVRVC--------------------------------ENIPIVLCGNKVDIKD--------  121 (170)
T ss_dssp             EEETTSGGGGTTHHHHHHHHHHHH--------------------------------CSCCEEEEEECCCCSC--------
T ss_pred             ccccccccccchhHHHHHHHhhcc--------------------------------CCCceeeecchhhhhh--------
Confidence            999999999999999999987654                                4678888888888852        


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L  245 (730)
                                                                 +.+ .+++..+++..+++|+||||++|.||+++|++|
T Consensus       122 -------------------------------------------~~~-~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l  157 (170)
T d1i2ma_         122 -------------------------------------------RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  157 (170)
T ss_dssp             -------------------------------------------SCC-TTTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHH
T ss_pred             -------------------------------------------hhh-hhHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence                                                       111 234567888999999999999999999999999


Q ss_pred             HHHHH
Q psy17467        246 AAELM  250 (730)
Q Consensus       246 i~~l~  250 (730)
                      ++.++
T Consensus       158 ~~~l~  162 (170)
T d1i2ma_         158 ARKLI  162 (170)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            98874

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=5.2e-30  Score=245.15  Aligned_cols=172  Identities=45%  Similarity=0.841  Sum_probs=125.1

Q ss_pred             CCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhcccc
Q psy17467          2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAH   81 (730)
Q Consensus         2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~AD   81 (730)
                      +.+++++||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+++|||+|++.+..++..+++++|
T Consensus         1 ~~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~   80 (173)
T d2fu5c1           1 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   80 (173)
T ss_dssp             CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCS
T ss_pred             CcccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCC
Confidence            35889999999999999999999999999999998899999999999999999999999999999999999999999999


Q ss_pred             EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467         82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV  161 (730)
Q Consensus        82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~  161 (730)
                      ++|+|||++++.||+.+..|+..+.....                               ++.|+++||||.|+..    
T Consensus        81 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------------------------~~~~iilv~~k~D~~~----  125 (173)
T d2fu5c1          81 GIMLVYDITNEKSFDNIRNWIRNIEEHAS-------------------------------ADVEKMILGNKCDVND----  125 (173)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSC-------------------------------TTCEEEEEEEC--CCS----
T ss_pred             EEEEEEECCChhhHHHHHHHHHHhhhhcc-------------------------------CCceEEEEEecccchh----
Confidence            99999999999999999999998865442                               5567777788888742    


Q ss_pred             HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHH
Q psy17467        162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL  241 (730)
Q Consensus       162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeL  241 (730)
                                                                    .+....+++..+++..+++|+||||++|.||+++
T Consensus       126 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~  159 (173)
T d2fu5c1         126 ----------------------------------------------KRQVSKERGEKLALDYGIKFMETSAKANINVENA  159 (173)
T ss_dssp             ----------------------------------------------CCCSCHHHHHHHHHHHTCEEEECCC---CCHHHH
T ss_pred             ----------------------------------------------hcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHH
Confidence                                                          2456678899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy17467        242 FMQIAAELMEKLA  254 (730)
Q Consensus       242 Fe~Li~~l~e~~~  254 (730)
                      |++|++.+.++..
T Consensus       160 f~~l~~~i~~k~~  172 (173)
T d2fu5c1         160 FFTLARDIKAKMD  172 (173)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999866543

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.9e-29  Score=240.38  Aligned_cols=164  Identities=29%  Similarity=0.446  Sum_probs=141.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||+++|++|||||||++||+++.|...+.||++.++ ...+..++..+.+++||++|++.+. ....++++||++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~-~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccc-cccccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            38999999999999999999999999999999998665 4556678999999999999998764 556789999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||++++.||+.+..|+..+....                              ..++.|+++||||+|+.+         
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilvgnK~Dl~~---------  120 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIK------------------------------KPKNVTLILVGNKADLDH---------  120 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHH------------------------------TTSCCCEEEEEECGGGGG---------
T ss_pred             cccCCccchhhhhhhcccccccc------------------------------cccCcceeeeccchhhhh---------
Confidence            99999999999999887765543                              125677888888888742         


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCC-ChHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASD-NVEKLFMQI  245 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~-GVeeLFe~L  245 (730)
                                                               .+.|+.++++++|+.++++|+||||++|. ||+++|..|
T Consensus       121 -----------------------------------------~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1         121 -----------------------------------------SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             -----------------------------------------GCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             -----------------------------------------hccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence                                                     36789999999999999999999999998 599999999


Q ss_pred             HHHHHHH
Q psy17467        246 AAELMEK  252 (730)
Q Consensus       246 i~~l~e~  252 (730)
                      ++.+.++
T Consensus       160 ~~~i~~~  166 (168)
T d2atva1         160 CREVRRR  166 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-29  Score=240.92  Aligned_cols=162  Identities=32%  Similarity=0.540  Sum_probs=146.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||+++|++|||||||++||+++.|...+.|+++ +.+...+.+++..+.+++||++|++.+...+..++++||++++|
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   81 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence            47999999999999999999999999999989988 67778888999999999999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||++++.||+++..|+.++....                              ..++.|++|||||+|+.+         
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilvgnK~Dl~~---------  122 (167)
T d1kaoa_          82 YSLVNQQSFQDIKPMRDQIIRVK------------------------------RYEKVPVILVGNKVDLES---------  122 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHT------------------------------TTSCCCEEEEEECGGGGG---------
T ss_pred             eeecchhhhhhhhchhhhhhhhc------------------------------cCCCCCEEEEEEccchhh---------
Confidence            99999999999999999887643                              235678888888888853         


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                                               .+.+..++++.+++.++++|+||||++|.||+++|+.|+
T Consensus       123 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i~  161 (167)
T d1kaoa_         123 -----------------------------------------EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV  161 (167)
T ss_dssp             -----------------------------------------GCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred             -----------------------------------------cccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHHH
Confidence                                                     256778999999999999999999999999999999999


Q ss_pred             HHH
Q psy17467        247 AEL  249 (730)
Q Consensus       247 ~~l  249 (730)
                      +.+
T Consensus       162 ~~i  164 (167)
T d1kaoa_         162 RQM  164 (167)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            876

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.5e-29  Score=240.48  Aligned_cols=165  Identities=38%  Similarity=0.701  Sum_probs=149.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      ++||+++|++|||||||++||++++|...+.||.+.++..+.+..++..+.+++||++|++.+..++..+++++|++|+|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            68999999999999999999999999999999999899899999999999999999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||++++.||+++..|+.++.....                               ...|++++|||.|+.++.       
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~-------------------------------~~~~~~~v~nk~d~~~~~-------  124 (170)
T d1ek0a_          83 YDVTKPQSFIKARHWVKELHEQAS-------------------------------KDIIIALVGNKIDMLQEG-------  124 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSC-------------------------------TTCEEEEEEECGGGGGSS-------
T ss_pred             EeCCcccchhhhhhhhhhhccccc-------------------------------cccceeeeeccccccccc-------
Confidence            999999999999999988765442                               456777888999886421       


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                                              ..+.++.++++++++.++++|+||||++|.||+++|..|+
T Consensus       125 ----------------------------------------~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~~i~  164 (170)
T d1ek0a_         125 ----------------------------------------GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIG  164 (170)
T ss_dssp             ----------------------------------------CCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             ----------------------------------------chhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHH
Confidence                                                    3478999999999999999999999999999999999998


Q ss_pred             HHH
Q psy17467        247 AEL  249 (730)
Q Consensus       247 ~~l  249 (730)
                      +.+
T Consensus       165 ~~i  167 (170)
T d1ek0a_         165 EKI  167 (170)
T ss_dssp             TTS
T ss_pred             HHh
Confidence            654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.3e-29  Score=238.92  Aligned_cols=162  Identities=32%  Similarity=0.555  Sum_probs=144.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||+++|++|||||||++||+++.|...+.|+++. .....+.+++..+.+++||++|++.+..++..+++++|++|+|
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   81 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED-SYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEE-EEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccc-ccceeEEeeeeEEEeccccccCcccccccccccccccceeEEe
Confidence            479999999999999999999999999999999984 4566778899999999999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||++++.||+++..|+..+.+..                              ..++.|++|||||+|+..         
T Consensus        82 ~d~~~~~sf~~~~~~~~~~~~~~------------------------------~~~~~p~ilvgnK~Dl~~---------  122 (167)
T d1c1ya_          82 YSITAQSTFNDLQDLREQILRVK------------------------------DTEDVPMILVGNKCDLED---------  122 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHH------------------------------CCSCCCEEEEEECTTCGG---------
T ss_pred             eeccchhhhHhHHHHHHHHHHhc------------------------------CCCCCeEEEEEEecCccc---------
Confidence            99999999999999999987643                              125678888889999853         


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc-CCeEEEEecCCCCChHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH-DMYYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l-g~~fvEtSAktG~GVeeLFe~L  245 (730)
                                                               .+.++.+++..+++.+ +++|+||||++|.||+++|+.|
T Consensus       123 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~l  161 (167)
T d1c1ya_         123 -----------------------------------------ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL  161 (167)
T ss_dssp             -----------------------------------------GCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred             -----------------------------------------ccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHHH
Confidence                                                     2467788999999875 7899999999999999999999


Q ss_pred             HHHH
Q psy17467        246 AAEL  249 (730)
Q Consensus       246 i~~l  249 (730)
                      ++.+
T Consensus       162 ~~~i  165 (167)
T d1c1ya_         162 VRQI  165 (167)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9876

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.5e-29  Score=243.34  Aligned_cols=172  Identities=25%  Similarity=0.410  Sum_probs=146.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      ++||+++|++|||||||++||+++.|...+.||++ +.......+++..+.+++||++|++++..++..+++++|++|+|
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            58999999999999999999999999999999998 55677788899999999999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||+++++||+++..|+.......                               .++.|+++||||+|+.++.....   
T Consensus        82 ~d~~~~~Sf~~~~~~~~~~~~~~-------------------------------~~~~~i~lvgnK~Dl~~~~~~~~---  127 (191)
T d2ngra_          82 FSVVSPSSFENVKEKWVPEITHH-------------------------------CPKTPFLLVGTQIDLRDDPSTIE---  127 (191)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHH-------------------------------CTTCCEEEEEECGGGGGCHHHHH---
T ss_pred             cccchHHHHHHHHHHHHHHHhhc-------------------------------CCCCceEEEeccccccccchhhh---
Confidence            99999999999987555443332                               25788999999999986543221   


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccc-cCCCCChHHHHHHHHhcC-CeEEEEecCCCCChHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDR-EDREIPTEVGEDFAKRHD-MYYLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL-~~R~Vs~ee~~~lak~lg-~~fvEtSAktG~GVeeLFe~  244 (730)
                                                          +.+. ..+.|+.++++++|+.++ +.|+||||++|.||+++|+.
T Consensus       128 ------------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~V~e~f~~  171 (191)
T d2ngra_         128 ------------------------------------KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE  171 (191)
T ss_dssp             ------------------------------------HHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTTCTTHHHHHHH
T ss_pred             ------------------------------------hhhhcccccccHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHH
Confidence                                                1111 346799999999999974 79999999999999999999


Q ss_pred             HHHHH
Q psy17467        245 IAAEL  249 (730)
Q Consensus       245 Li~~l  249 (730)
                      +++.+
T Consensus       172 l~~~~  176 (191)
T d2ngra_         172 AILAA  176 (191)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98766

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.2e-29  Score=237.14  Aligned_cols=163  Identities=41%  Similarity=0.745  Sum_probs=148.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      -.+||+|+|++|||||||++||+++.|...+.|+.+.+.....+...+..+.+.+||++|++.+..++..+++++|++|+
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            45899999999999999999999999999999999999988899999999999999999999999999999999999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      |||++++.||+.+..|+..+.+..                               .++.|++|||||+|+.+        
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~-------------------------------~~~~~iilvgnK~Dl~~--------  125 (170)
T d1r2qa_          85 VYDITNEESFARAKNWVKELQRQA-------------------------------SPNIVIALSGNKADLAN--------  125 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHS-------------------------------CTTCEEEEEEECGGGGG--------
T ss_pred             EeccchhhHHHHHHHHhhhhhhcc-------------------------------CCCceEEeecccccccc--------
Confidence            999999999999999998886653                               25677888888888752        


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L  245 (730)
                                                                ++.++.++++++++.++++|+||||++|.||+++|+.|
T Consensus       126 ------------------------------------------~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l  163 (170)
T d1r2qa_         126 ------------------------------------------KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI  163 (170)
T ss_dssp             ------------------------------------------GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             ------------------------------------------cccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHH
Confidence                                                      36789999999999999999999999999999999999


Q ss_pred             HHHH
Q psy17467        246 AAEL  249 (730)
Q Consensus       246 i~~l  249 (730)
                      ++.+
T Consensus       164 ~~~i  167 (170)
T d1r2qa_         164 AKKL  167 (170)
T ss_dssp             HHTS
T ss_pred             HHHH
Confidence            8765

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.2e-29  Score=236.16  Aligned_cols=167  Identities=48%  Similarity=0.816  Sum_probs=140.0

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhcccc
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPG-QGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAH   81 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~-~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~AD   81 (730)
                      -|++.+||+|+|++|||||||+++|+++.+... +.++++.++....+..++..+.+++|||+|++.+..++..+++++|
T Consensus         2 ~~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d   81 (170)
T d2g6ba1           2 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH   81 (170)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred             CCceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCc
Confidence            488999999999999999999999999998655 4566778888889999999999999999999999999999999999


Q ss_pred             EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467         82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV  161 (730)
Q Consensus        82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~  161 (730)
                      ++++|||++++.||+.+..|+..+.....                               +..|+++|+||+|+.     
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------------------------~~~~iilv~~k~d~~-----  125 (170)
T d2g6ba1          82 ALLLLYDVTNKASFDNIQAWLTEIHEYAQ-------------------------------HDVALMLLGNKVDSA-----  125 (170)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSC-------------------------------TTCEEEEEEECCSTT-----
T ss_pred             eeEEEecCCcccchhhhhhhhhhhhhccC-------------------------------CCceEEEEEeeechh-----
Confidence            99999999999999999999888766542                               456777777877764     


Q ss_pred             HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHH
Q psy17467        162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL  241 (730)
Q Consensus       162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeL  241 (730)
                                                                   ..+.++.+++..+++.++++|+||||++|.||+++
T Consensus       126 ---------------------------------------------~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~  160 (170)
T d2g6ba1         126 ---------------------------------------------HERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA  160 (170)
T ss_dssp             ---------------------------------------------SCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred             ---------------------------------------------hcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHH
Confidence                                                         23578889999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy17467        242 FMQIAAELM  250 (730)
Q Consensus       242 Fe~Li~~l~  250 (730)
                      |++|++.+.
T Consensus       161 f~~l~~~i~  169 (170)
T d2g6ba1         161 FTAIAKELK  169 (170)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHcC
Confidence            999998773

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.8e-29  Score=234.68  Aligned_cols=162  Identities=30%  Similarity=0.501  Sum_probs=143.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||+++|++|||||||++||+++.+...+.|+++.++ ...+..++..+.+.+||++|.+.+...+..+++.++++++|
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv   81 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceee-ccceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence            37999999999999999999999999999999998555 45577888899999999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||++++.||+.+..|+..+.+...                              .++.|+++||||+|+.          
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~------------------------------~~~~piilv~nK~Dl~----------  121 (166)
T d1ctqa_          82 FAINNTKSFEDIHQYREQIKRVKD------------------------------SDDVPMVLVGNKCDLA----------  121 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHT------------------------------CSSCCEEEEEECTTCS----------
T ss_pred             ecccccccHHHHHHHHHHHHHhcC------------------------------CCCCeEEEEecccccc----------
Confidence            999999999999999999887542                              2456777777777763          


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                                               .+.++.++++++++.++++|+||||++|.||+++|..|+
T Consensus       122 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i~  160 (166)
T d1ctqa_         122 -----------------------------------------ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             -----------------------------------------CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             -----------------------------------------cccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHH
Confidence                                                     356788999999999999999999999999999999999


Q ss_pred             HHHH
Q psy17467        247 AELM  250 (730)
Q Consensus       247 ~~l~  250 (730)
                      +.+.
T Consensus       161 ~~i~  164 (166)
T d1ctqa_         161 REIR  164 (166)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8874

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.5e-28  Score=239.75  Aligned_cols=171  Identities=47%  Similarity=0.858  Sum_probs=154.4

Q ss_pred             CCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhcccc
Q psy17467          2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAH   81 (730)
Q Consensus         2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~AD   81 (730)
                      +++++.+||+|+|++|||||||+++|+++.+...+.|+.+.++....+.+++..+.+.+|||+|++++..++..++++||
T Consensus         1 ~~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~   80 (194)
T d2bcgy1           1 SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSH   80 (194)
T ss_dssp             CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCS
T ss_pred             CCCCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCC
Confidence            47899999999999999999999999999999999999998888889999999999999999999999999999999999


Q ss_pred             EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467         82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV  161 (730)
Q Consensus        82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~  161 (730)
                      ++|+|||++++++|+.+..|+..+.+..                               ..+.|+++||||.|+.+    
T Consensus        81 ~~i~v~d~t~~~s~~~~~~~~~~~~~~~-------------------------------~~~~~iilv~nK~D~~~----  125 (194)
T d2bcgy1          81 GIIIVYDVTDQESFNGVKMWLQEIDRYA-------------------------------TSTVLKLLVGNKCDLKD----  125 (194)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHS-------------------------------CTTCEEEEEEECTTCTT----
T ss_pred             EEEEEEeCcchhhhhhHhhhhhhhhhcc-------------------------------cCCceEEEEEecccccc----
Confidence            9999999999999999999988886543                               25667788888888752    


Q ss_pred             HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHH
Q psy17467        162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL  241 (730)
Q Consensus       162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeL  241 (730)
                                                                    .+.+..+++..+++..++.|+||||++|.||+++
T Consensus       126 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~  159 (194)
T d2bcgy1         126 ----------------------------------------------KRVVEYDVAKEFADANKMPFLETSALDSTNVEDA  159 (194)
T ss_dssp             ----------------------------------------------TCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHH
T ss_pred             ----------------------------------------------ccchhHHHHhhhhhccCcceEEEecCcCccHHHH
Confidence                                                          2567889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy17467        242 FMQIAAELMEKL  253 (730)
Q Consensus       242 Fe~Li~~l~e~~  253 (730)
                      |+.+++.+.+..
T Consensus       160 f~~l~~~i~~~~  171 (194)
T d2bcgy1         160 FLTMARQIKESM  171 (194)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh
Confidence            999999886543

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-28  Score=238.03  Aligned_cols=174  Identities=25%  Similarity=0.390  Sum_probs=146.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      ..+||+|+|++|||||||++||+++.|...+.||++ +.....+..++..+.+.+||++|++.+..++..+++++|++|+
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhcccccceeee
Confidence            459999999999999999999999999999999998 5667788889999999999999999999999999999999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      |||++++.||+++..|+....+..                               ..++|++|||||+|+.++.......
T Consensus        83 v~d~~~~~sf~~i~~~~~~~~~~~-------------------------------~~~~piilvgnK~Dl~~~~~~~~~~  131 (183)
T d1mh1a_          83 CFSLVSPASFENVRAKWYPEVRHH-------------------------------CPNTPIILVGTKLDLRDDKDTIEKL  131 (183)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH-------------------------------STTSCEEEEEECHHHHTCHHHHHHH
T ss_pred             eeccchHHHHHHHHHHHHHHHHHh-------------------------------CCCCcEEEEeecccchhhhhhhhhh
Confidence            999999999999987444433322                               1567899999999987543221100


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC-CeEEEEecCCCCChHHHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg-~~fvEtSAktG~GVeeLFe~  244 (730)
                                                            .....+.+...++..+|+.++ +.|+||||++|.||+++|+.
T Consensus       132 --------------------------------------~~~~~~~~~~~~~~~~a~~~~~~~~~E~SAk~~~~V~e~F~~  173 (183)
T d1mh1a_         132 --------------------------------------KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE  173 (183)
T ss_dssp             --------------------------------------HHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHH
T ss_pred             --------------------------------------hhccccchhhHHHHHHHHHcCCceEEEcCCCCCcCHHHHHHH
Confidence                                                  011235677889999999987 79999999999999999999


Q ss_pred             HHHHH
Q psy17467        245 IAAEL  249 (730)
Q Consensus       245 Li~~l  249 (730)
                      |++.+
T Consensus       174 l~~~i  178 (183)
T d1mh1a_         174 AIRAV  178 (183)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99887

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.3e-28  Score=233.54  Aligned_cols=169  Identities=33%  Similarity=0.634  Sum_probs=145.8

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI   83 (730)
                      ++..+||+|+|++|||||||++||+++.|...+.+|++.......+..++..+.+++||++|..+....+..++..+|++
T Consensus         3 ~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   82 (174)
T d1wmsa_           3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   82 (174)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceE
Confidence            56789999999999999999999999999999999999888888999999999999999999999999999999999999


Q ss_pred             EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      ++|||++++.||+.+..|++++.....                           .....+.|++|||||+|+        
T Consensus        83 i~~~d~~~~~s~~~~~~~~~~i~~~~~---------------------------~~~~~~~piilVgnK~Dl--------  127 (174)
T d1wmsa_          83 LLTFSVDDSQSFQNLSNWKKEFIYYAD---------------------------VKEPESFPFVILGNKIDI--------  127 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHT---------------------------CSCTTTSCEEEEEECTTC--------
T ss_pred             EEEEeeecccccchhhhHHHHHHHHhc---------------------------cccCCCceEEEeccccch--------
Confidence            999999999999999999999876542                           112245677777777776        


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC-CeEEEEecCCCCChHHHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYLETSAKASDNVEKLF  242 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg-~~fvEtSAktG~GVeeLF  242 (730)
                                                                 .++.++.++++++++..+ ++|+||||++|.||+++|
T Consensus       128 -------------------------------------------~~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f  164 (174)
T d1wmsa_         128 -------------------------------------------SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF  164 (174)
T ss_dssp             -------------------------------------------SSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHH
T ss_pred             -------------------------------------------hhccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHHH
Confidence                                                       346788999999999875 799999999999999999


Q ss_pred             HHHHHHHH
Q psy17467        243 MQIAAELM  250 (730)
Q Consensus       243 e~Li~~l~  250 (730)
                      +.|++.++
T Consensus       165 ~~l~~~il  172 (174)
T d1wmsa_         165 EEAVRRVL  172 (174)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998874

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.2e-28  Score=233.34  Aligned_cols=163  Identities=45%  Similarity=0.828  Sum_probs=138.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      ++||+++|++|||||||+++|+++.+...+.||++.++....+.+++..+.+.+|||||++.+..++..+++++|++|+|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||++++.||+++..|+..+.....                               ...|++++++|.|+           
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~-------------------------------~~~~~i~~~~k~d~-----------  119 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHAN-------------------------------DEAQLLLVGNKSDM-----------  119 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSC-------------------------------TTCEEEEEEECTTC-----------
T ss_pred             EECCCccCHHHHHhhhhhhhcccc-------------------------------Ccceeeeecchhhh-----------
Confidence            999999999999998888766543                               23344445555544           


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                                              ..+.+..++++++++.++++|+||||++|.||+++|++|+
T Consensus       120 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~  159 (166)
T d1g16a_         120 ----------------------------------------ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  159 (166)
T ss_dssp             ----------------------------------------TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             ----------------------------------------hhhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHH
Confidence                                                    4567788999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy17467        247 AELME  251 (730)
Q Consensus       247 ~~l~e  251 (730)
                      +.+.+
T Consensus       160 ~~i~~  164 (166)
T d1g16a_         160 KLIQE  164 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98854

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.3e-28  Score=234.45  Aligned_cols=171  Identities=32%  Similarity=0.588  Sum_probs=134.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEe-CCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEI-NNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~v-dg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      .+||+++|++|||||||+++|+++.+...+.|+.+.+........ +...+.+.+|||+|++++...+..+++.+|++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            589999999999999999999999999998888887666666554 4455789999999999999999999999999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      |||++++.||+.+..|+.++.....                           .....+.|+++||||+|+.+        
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~---------------------------~~~~~~~piilv~nK~Dl~~--------  126 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHAN---------------------------VNSPETFPFVILGNKIDAEE--------  126 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHC---------------------------CSCTTTCCEEEEEECTTSCG--------
T ss_pred             Eeecccccccchhhhcchhhhhhhh---------------------------hcccccCcEEEEecccchhh--------
Confidence            9999999999999999999876542                           11235788899999999863        


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC-CeEEEEecCCCCChHHHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg-~~fvEtSAktG~GVeeLFe~  244 (730)
                                                               ..+.++.++++++++.++ ++|+||||++|.||+++|++
T Consensus       127 -----------------------------------------~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~f~~  165 (175)
T d1ky3a_         127 -----------------------------------------SKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEE  165 (175)
T ss_dssp             -----------------------------------------GGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHH
T ss_pred             -----------------------------------------hhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHH
Confidence                                                     124578899999999986 78999999999999999999


Q ss_pred             HHHHHHHHH
Q psy17467        245 IAAELMEKL  253 (730)
Q Consensus       245 Li~~l~e~~  253 (730)
                      |++.+++++
T Consensus       166 l~~~~l~~~  174 (175)
T d1ky3a_         166 IARSALQQN  174 (175)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcc
Confidence            999887653

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.6e-28  Score=237.14  Aligned_cols=175  Identities=26%  Similarity=0.419  Sum_probs=147.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||+++|++|||||||++||+++.|+..+.||++ +.....+.+++..+.+++||++|++.+...+..+++++|++|+|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-ecccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            48999999999999999999999999999999987 56667788899999999999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||+++++||+.+..|+..+....                               .++.|+++||||.|+.+......   
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~-------------------------------~~~~~iilVgnK~Dl~~~~~~~~---  126 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEF-------------------------------CPNTKMLLVGCKSDLRTDVSTLV---  126 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHH-------------------------------CTTCEEEEEEECGGGGGCHHHHH---
T ss_pred             eecccCCCHHHHHHHHHHHHhcc-------------------------------CCcceEEEEEecccccccchhhH---
Confidence            99999999999987655543332                               25778899999999976433211   


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCC-ChHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASD-NVEKLFMQ  244 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~-GVeeLFe~  244 (730)
                                                         ...+...+.|+.+++..+|+.++. .|+||||++|. ||+++|+.
T Consensus       127 -----------------------------------~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~~~n~i~~~F~~  171 (179)
T d1m7ba_         127 -----------------------------------ELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV  171 (179)
T ss_dssp             -----------------------------------HHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHH
T ss_pred             -----------------------------------HHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCCCCcCHHHHHHH
Confidence                                               111223578999999999999874 89999999998 49999999


Q ss_pred             HHHHHHH
Q psy17467        245 IAAELME  251 (730)
Q Consensus       245 Li~~l~e  251 (730)
                      +++.++.
T Consensus       172 ~~~~~l~  178 (179)
T d1m7ba_         172 ATLACVN  178 (179)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9998853

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.5e-28  Score=235.28  Aligned_cols=165  Identities=23%  Similarity=0.368  Sum_probs=138.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeEEEEEEEeCCeEEEEEEEeCCC---chhhhhhhHhhhcccc
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPP-GQGATIGVDFMIKTVEINNERIKLQIWDTAG---QERFRSITQSYYRSAH   81 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~-~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG---~e~~~sl~~~~~r~AD   81 (730)
                      .-+||+++|++|||||||+++|+++.+.. ...++++.+.+.+.+.+++..+.+.+||+++   ++++  ++..+++++|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            45899999999999999999999887653 4456777788899999999999999999764   4444  5677899999


Q ss_pred             EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467         82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV  161 (730)
Q Consensus        82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~  161 (730)
                      ++|+|||++++.||+++..|+.++....                              ..+++|+++||||+|+.+    
T Consensus        80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~------------------------------~~~~~piilvgnK~Dl~~----  125 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKASELRIQLRRAR------------------------------QTEDIPIILVGNKSDLVR----  125 (172)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSG------------------------------GGTTSCEEEEEECTTCGG----
T ss_pred             eeeeeecccccchhhhhhhhhhhhhhcc------------------------------ccCCceEEEEeccccccc----
Confidence            9999999999999999999999886532                              125678888888888752    


Q ss_pred             HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHH
Q psy17467        162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL  241 (730)
Q Consensus       162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeL  241 (730)
                                                                    .++++.++++++++.++++|+||||++|.||+++
T Consensus       126 ----------------------------------------------~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~  159 (172)
T d2g3ya1         126 ----------------------------------------------CREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL  159 (172)
T ss_dssp             ----------------------------------------------GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             ----------------------------------------------cccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHH
Confidence                                                          3578899999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy17467        242 FMQIAAELMEK  252 (730)
Q Consensus       242 Fe~Li~~l~e~  252 (730)
                      |+.|++.+..+
T Consensus       160 f~~l~~~i~~r  170 (172)
T d2g3ya1         160 FEGIVRQVRLR  170 (172)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            99999988544

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=3.1e-28  Score=229.61  Aligned_cols=161  Identities=45%  Similarity=0.837  Sum_probs=142.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh-hhHhhhccccEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS-ITQSYYRSAHALI   84 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s-l~~~~~r~ADaII   84 (730)
                      +++||+++|++|||||||++||+++.+...+.++.+.....+...+.+....+.+||++|...+.. .++.+++++|++|
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            469999999999999999999999999999999999888888999999999999999999877654 5678999999999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      +|||++|++||+.+..|+.++.+..                              ..+++|++|||||+|+.+       
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~pi~lvgnK~Dl~~-------  123 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHL------------------------------LANDIPRILVGNKCDLRS-------  123 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHC------------------------------CCSCCCEEEEEECTTCGG-------
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhc------------------------------cCCCCeEEEEeccccchh-------
Confidence            9999999999999999999987653                              125678888888888852       


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCC---CCChHHH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKA---SDNVEKL  241 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAkt---G~GVeeL  241 (730)
                                                                 .++++.++++++|+.++++|+||||++   |.||+++
T Consensus       124 -------------------------------------------~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~  160 (165)
T d1z06a1         124 -------------------------------------------AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAI  160 (165)
T ss_dssp             -------------------------------------------GCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHH
T ss_pred             -------------------------------------------ccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHH
Confidence                                                       357899999999999999999999997   4599999


Q ss_pred             HHHHH
Q psy17467        242 FMQIA  246 (730)
Q Consensus       242 Fe~Li  246 (730)
                      |+.|+
T Consensus       161 F~~lA  165 (165)
T d1z06a1         161 FMTLA  165 (165)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            98873

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.7e-27  Score=228.33  Aligned_cols=166  Identities=43%  Similarity=0.797  Sum_probs=147.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      -.++||+|+|++|||||||+++|.++.+...+.++.+.....+.+.+++..+.+.+|||+|++++..++..+++++|++|
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            35799999999999999999999999999999899988888889999999999999999999999999999999999999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      +|||++++.+|+.+..|+.++.+..                              .....|+++++||.|.         
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~~i~~~~nk~d~---------  125 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLDNWLNELETYC------------------------------TRNDIVNMLVGNKIDK---------  125 (177)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCC------------------------------SCSCCEEEEEEECTTS---------
T ss_pred             EEEECCCccccccchhhhhhhcccc------------------------------cccceeeEEEeecccc---------
Confidence            9999999999999999999886533                              2244566666666664         


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~  244 (730)
                                                                ..+.++.++++++++.+++.|++|||++|.||+++|++
T Consensus       126 ------------------------------------------~~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~  163 (177)
T d1x3sa1         126 ------------------------------------------ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE  163 (177)
T ss_dssp             ------------------------------------------SSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             ------------------------------------------ccccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHH
Confidence                                                      44678899999999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy17467        245 IAAELME  251 (730)
Q Consensus       245 Li~~l~e  251 (730)
                      +++.+.+
T Consensus       164 l~~~l~~  170 (177)
T d1x3sa1         164 LVEKIIQ  170 (177)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHcc
Confidence            9988853

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=4.5e-27  Score=226.41  Aligned_cols=172  Identities=37%  Similarity=0.625  Sum_probs=149.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      ++||+|+|++|||||||+++|++++|...+.||++.+...+.....+..+.+.+||++|+..+...+..++..||++++|
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||++++.+|+.+..|++++......                           ....+.|+++||||+|+           
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~---------------------------~~~~~ip~ilv~nK~Dl-----------  123 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASP---------------------------RDPENFPFVVLGNKIDL-----------  123 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCC---------------------------SSGGGSCEEEEEECTTS-----------
T ss_pred             ecccchhhhhcchhhHHHHHHHhcc---------------------------ccccCCCEEEEEEeecc-----------
Confidence            9999999999999999998765421                           11235567777776666           


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHh-cCCeEEEEecCCCCChHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR-HDMYYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~-lg~~fvEtSAktG~GVeeLFe~L  245 (730)
                                                              .++.+..+++.+++.. .+++|+||||++|.||+++|+++
T Consensus       124 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l  163 (184)
T d1vg8a_         124 ----------------------------------------ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI  163 (184)
T ss_dssp             ----------------------------------------SCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHH
T ss_pred             ----------------------------------------cccchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHHHH
Confidence                                                    3356777888888765 57899999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy17467        246 AAELMEKLAEK  256 (730)
Q Consensus       246 i~~l~e~~~~~  256 (730)
                      ++.+.++..+.
T Consensus       164 ~~~i~~~~~~~  174 (184)
T d1vg8a_         164 ARNALKQETEV  174 (184)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHhccccc
Confidence            99987765553

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.5e-27  Score=226.52  Aligned_cols=168  Identities=18%  Similarity=0.292  Sum_probs=139.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      +.+||+++|++|||||||+++|+++.|... .++.+ +.+.+.+.+++..+.+++|||+|+..+     .|+++||++|+
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~-~~t~~-~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~il   76 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTES-EQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIF   76 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCCC-CCSSC-EEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCCc-CCccc-eeEEEEeecCceEEEEEEeeccccccc-----ccccccceeEE
Confidence            359999999999999999999999998654 46665 445778889999999999999998754     47899999999


Q ss_pred             EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467         86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL  165 (730)
Q Consensus        86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l  165 (730)
                      |||+++++||+++..|++++.....                            ...++.|+++||||.|++..       
T Consensus        77 Vfd~~~~~Sf~~~~~~~~~i~~~~~----------------------------~~~~~~pi~lV~~k~d~d~~-------  121 (175)
T d2bmja1          77 VFSLEDENSFQAVSRLHGQLSSLRG----------------------------EGRGGLALALVGTQDRISAS-------  121 (175)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHCC------------------------------CCCCEEEEEEECTTCCSS-------
T ss_pred             EeecccchhhhhhHHHHHHHHHHhh----------------------------cccCCccEEEEeeecCcchh-------
Confidence            9999999999999999999876542                            12356788888888887531       


Q ss_pred             HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHh-cCCeEEEEecCCCCChHHHHHH
Q psy17467        166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR-HDMYYLETSAKASDNVEKLFMQ  244 (730)
Q Consensus       166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~-lg~~fvEtSAktG~GVeeLFe~  244 (730)
                                                               ..+.++.++++.++.. .++.|+||||++|.||+++|..
T Consensus       122 -----------------------------------------~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~  160 (175)
T d2bmja1         122 -----------------------------------------SPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQE  160 (175)
T ss_dssp             -----------------------------------------SCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHHHHHH
T ss_pred             -----------------------------------------hhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHHHHHH
Confidence                                                     2367888999999755 5789999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy17467        245 IAAELMEKLAEK  256 (730)
Q Consensus       245 Li~~l~e~~~~~  256 (730)
                      +++.+...+.+.
T Consensus       161 l~~~i~~~~~~~  172 (175)
T d2bmja1         161 VAQKVVTLRKQQ  172 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhc
Confidence            999997766553

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.92  E-value=1.8e-25  Score=211.30  Aligned_cols=161  Identities=21%  Similarity=0.366  Sum_probs=129.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||+++|++|||||||+++|.++.+...+.||++.++  ..+..++  +.+.+||++|++.+...+..++..+|++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM--RKITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEE--EEEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeee--eeeeeee--EEEEEeeccccccccccccccccccchhhcc
Confidence            48999999999999999999999999998989998544  4455565  8899999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||++++.+|+.+..|+..+.+..                              ..++.|++|||||.|+.+..+.     
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~pi~lv~nK~Dl~~~~~~-----  122 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKP------------------------------QLQGIPVLVLGNKRDLPGALDE-----  122 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCG------------------------------GGTTCCEEEEEECTTSTTCCCH-----
T ss_pred             cccccccccchhhhhhhhhhhhh------------------------------cccCCcEEEEEeccccchhhhH-----
Confidence            99999999999998888775432                              1267889999999998532110     


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                                                +.+..+.+...++..+++++||||++|.||+++|++|+
T Consensus       123 ------------------------------------------~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~  160 (164)
T d1zd9a1         123 ------------------------------------------KELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI  160 (164)
T ss_dssp             ------------------------------------------HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             ------------------------------------------HHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHH
Confidence                                                      01111222233344567899999999999999999998


Q ss_pred             HH
Q psy17467        247 AE  248 (730)
Q Consensus       247 ~~  248 (730)
                      +.
T Consensus       161 ~~  162 (164)
T d1zd9a1         161 QH  162 (164)
T ss_dssp             HT
T ss_pred             Hc
Confidence            74

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.91  E-value=1.2e-25  Score=213.50  Aligned_cols=164  Identities=22%  Similarity=0.291  Sum_probs=124.9

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      ..+..+||+++|++|||||||+++|.++.+...+ ++.+.  ....+...+  +.+.+||++|++.+...+..+++.+|+
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-~~~~~--~~~~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~   86 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQGF--NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDI   86 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-EETTE--EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSE
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-eeeee--eEEEeccCC--eeEeEeeccccccchhHHHHHhhccce
Confidence            3456799999999999999999999998875433 55653  345556665  889999999999999999999999999


Q ss_pred             EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467         83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL  162 (730)
Q Consensus        83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~  162 (730)
                      +|+|||++++.+|+++..|+.++....                              ...+.|+++||||+|+.+.... 
T Consensus        87 ii~v~d~~d~~s~~~~~~~~~~~~~~~------------------------------~~~~~pillv~nK~Dl~~~~~~-  135 (176)
T d1fzqa_          87 LIYVIDSADRKRFEETGQELTELLEEE------------------------------KLSCVPVLIFANKQDLLTAAPA-  135 (176)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHTTCG------------------------------GGTTCCEEEEEECTTSTTCCCH-
T ss_pred             eEEeeccccccchhhhhhhhhhhhhhh------------------------------ccCCCeEEEEEEeccccccccH-
Confidence            999999999999999988887764322                              1256788999999998642110 


Q ss_pred             HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467        163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF  242 (730)
Q Consensus       163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF  242 (730)
                                                                    ..+........++..++.+++|||++|+||+++|
T Consensus       136 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~  169 (176)
T d1fzqa_         136 ----------------------------------------------SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGM  169 (176)
T ss_dssp             ----------------------------------------------HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             ----------------------------------------------HHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHH
Confidence                                                          0000001111223446789999999999999999


Q ss_pred             HHHHHH
Q psy17467        243 MQIAAE  248 (730)
Q Consensus       243 e~Li~~  248 (730)
                      ++|++.
T Consensus       170 ~~l~~~  175 (176)
T d1fzqa_         170 NWVCKN  175 (176)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            999864

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.91  E-value=1.7e-25  Score=214.59  Aligned_cols=167  Identities=21%  Similarity=0.294  Sum_probs=122.7

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI   83 (730)
                      .+..+||+++|++|||||||+++|.++.+.. ..||.+...  .....++  +.+.+||++|++.+...+..+++++|++
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceEE--EEEeeCC--EEEEEEecccccccchhHHhhhccceeE
Confidence            3456999999999999999999999887754 347776443  3444455  8899999999999999999999999999


Q ss_pred             EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467         84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA  163 (730)
Q Consensus        84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~  163 (730)
                      ++|||++|+.++..+..|+..+....                              ...+.|+++||||+|+.+..+.  
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~~------------------------------~~~~~piliv~NK~Dl~~~~~~--  136 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQEE------------------------------ELQDAALLVFANKQDQPGALSA--  136 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTSS------------------------------TTSSCEEEEEEECTTSTTCCCH--
T ss_pred             EEEeeecccccchhHHHHHHHHHHhh------------------------------ccCCcceEEEEEeeccccccCH--
Confidence            99999999999999988887754321                              2256788899999998531100  


Q ss_pred             HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHH
Q psy17467        164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM  243 (730)
Q Consensus       164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe  243 (730)
                                                                   +++..+.+...+...++.|+||||++|+||+++|+
T Consensus       137 ---------------------------------------------~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~~~  171 (182)
T d1moza_         137 ---------------------------------------------SEVSKELNLVELKDRSWSIVASSAIKGEGITEGLD  171 (182)
T ss_dssp             ---------------------------------------------HHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHH
T ss_pred             ---------------------------------------------HHHHHHHHHHHHhhCCCEEEEEECCCCCCHHHHHH
Confidence                                                         00111111112334567899999999999999999


Q ss_pred             HHHHHHHHH
Q psy17467        244 QIAAELMEK  252 (730)
Q Consensus       244 ~Li~~l~e~  252 (730)
                      +|++.+.++
T Consensus       172 ~l~~~i~~~  180 (182)
T d1moza_         172 WLIDVIKEE  180 (182)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            999988553

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.91  E-value=4.8e-24  Score=200.66  Aligned_cols=157  Identities=21%  Similarity=0.316  Sum_probs=122.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||+++|++|||||||+++|.+..+. .+.||.+..  ...+..++  +.+.+||++|++.+...+..+++.+|++++|
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEeee--eeeccccc--cceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            489999999999999999999987764 566888743  34455666  8899999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||++|..++..+..|+..+....                              ...+.|+++|+||+|+.+.        
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~------------------------------~~~~~p~iiv~nK~Dl~~~--------  118 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEE------------------------------RLAGATLLIFANKQDLPGA--------  118 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCG------------------------------GGTTCEEEEEEECTTSTTC--------
T ss_pred             eecccchhHHHHHHhhhhhhhhc------------------------------ccCCCceEEEEeccccccc--------
Confidence            99999999998887766654321                              1256788888898888531        


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHH-----HHhcCCeEEEEecCCCCChHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDF-----AKRHDMYYLETSAKASDNVEKL  241 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~l-----ak~lg~~fvEtSAktG~GVeeL  241 (730)
                                                                  ...++....     .+..++.+++|||++|+||+++
T Consensus       119 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  154 (165)
T d1ksha_         119 --------------------------------------------LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPG  154 (165)
T ss_dssp             --------------------------------------------CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             --------------------------------------------cCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHH
Confidence                                                        111221111     1223467999999999999999


Q ss_pred             HHHHHHHHH
Q psy17467        242 FMQIAAELM  250 (730)
Q Consensus       242 Fe~Li~~l~  250 (730)
                      |++|++.+.
T Consensus       155 ~~~l~~~i~  163 (165)
T d1ksha_         155 IDWLLDDIS  163 (165)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998874

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.90  E-value=1e-24  Score=207.70  Aligned_cols=161  Identities=21%  Similarity=0.370  Sum_probs=122.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||+++|++|||||||++||.++.+... .+|.+..  ........  +.+.+||++|+..+...+..+++++|++|+|
T Consensus        12 ~~kIvlvG~~~vGKTSli~rl~~~~~~~~-~~t~~~~--~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v   86 (173)
T d1e0sa_          12 EMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFN--VETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   86 (173)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTTCCCCEEE-EEETTEE--EEEEEETT--EEEEEEEESCCGGGHHHHGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCc-cceeeee--EEEeeccc--eeeEEecCCCcchhhhHHHhhhcccceEEEE
Confidence            58999999999999999999998886543 3566533  33444444  8899999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      ||++++.++..+..|+..+.+..                              ...+.|+++++||.|+.+....     
T Consensus        87 ~D~s~~~~~~~~~~~l~~~~~~~------------------------------~~~~~piiiv~NK~Dl~~~~~~-----  131 (173)
T d1e0sa_          87 VDCADRDRIDEARQELHRIINDR------------------------------EMRDAIILIFANKQDLPDAMKP-----  131 (173)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTSG------------------------------GGTTCEEEEEEECTTSTTCCCH-----
T ss_pred             EecccchhHHHHHHHHHHHhhhc------------------------------ccccceeeeeeecccccccccH-----
Confidence            99999999999988887765432                              1256788888999998642110     


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                                                .++..+.+...++..++.+++|||++|+||+++|++|.
T Consensus       132 ------------------------------------------~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~~~~l~  169 (173)
T d1e0sa_         132 ------------------------------------------HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT  169 (173)
T ss_dssp             ------------------------------------------HHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred             ------------------------------------------HHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHH
Confidence                                                      01111222223344567899999999999999999998


Q ss_pred             HHH
Q psy17467        247 AEL  249 (730)
Q Consensus       247 ~~l  249 (730)
                      +.+
T Consensus       170 ~~~  172 (173)
T d1e0sa_         170 SNY  172 (173)
T ss_dssp             HHC
T ss_pred             Hhc
Confidence            753

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.89  E-value=3.5e-24  Score=197.69  Aligned_cols=159  Identities=18%  Similarity=0.294  Sum_probs=123.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||+++|++|||||||+++|.++++...+.....     .....+...+.+.+||++|...+...+..+++.++++++||
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF-----NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSC-----CEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceee-----EEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            6999999999999999999999988766543332     12233445588999999999999999999999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |++++.++..+..|+.++....                              .....|+++++||.|+.+...       
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~i~~v~~k~d~~~~~~-------  118 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAED------------------------------ELRDAVLLVFANKQDLPNAMN-------  118 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCG------------------------------GGTTCEEEEEEECTTSTTCCC-------
T ss_pred             EecChHHHHHHHHHHHHHHHhh------------------------------cccCceEEEEeeccccccccc-------
Confidence            9999999999988887775432                              125567888889888764210       


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA  247 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~  247 (730)
                                                              .+++..+....+++..++.+++|||++|+||+++|++|++
T Consensus       119 ----------------------------------------~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~  158 (160)
T d1r8sa_         119 ----------------------------------------AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN  158 (160)
T ss_dssp             ----------------------------------------HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred             ----------------------------------------HHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHh
Confidence                                                    0122223334455667889999999999999999999987


Q ss_pred             H
Q psy17467        248 E  248 (730)
Q Consensus       248 ~  248 (730)
                      .
T Consensus       159 ~  159 (160)
T d1r8sa_         159 Q  159 (160)
T ss_dssp             H
T ss_pred             c
Confidence            5

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.83  E-value=1.1e-20  Score=174.85  Aligned_cols=161  Identities=22%  Similarity=0.342  Sum_probs=122.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy   87 (730)
                      +||++||++|||||||+++|+++.+.... ++.+.  .......++  +.+.+||.+|..........++..++++++++
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGF--NVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVV   80 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSSE--EEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCccee-cccce--eeeeeccCc--eEEEEeeccccccccccchhhhhhhhhhhhhh
Confidence            89999999999999999999999887543 66652  233444455  78999999999999999999999999999999


Q ss_pred             ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467         88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM  167 (730)
Q Consensus        88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~  167 (730)
                      |+++..++.....+........                              .....|+++++||.|+.+....      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~i~iv~nk~Dl~~~~~~------  124 (169)
T d1upta_          81 DSCDRDRIGISKSELVAMLEEE------------------------------ELRKAILVVFANKQDMEQAMTS------  124 (169)
T ss_dssp             ETTCCTTHHHHHHHHHHHHTCG------------------------------GGTTCEEEEEEECTTSTTCCCH------
T ss_pred             hhhhcchhhhccchhhhhhhhh------------------------------ccccceEEEEEeeccccccccH------
Confidence            9999999988877655543321                              2256777888888888642110      


Q ss_pred             hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467        168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA  247 (730)
Q Consensus       168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~  247 (730)
                                                               .++..+.+..++...+++|++|||++|.||+++|++|++
T Consensus       125 -----------------------------------------~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~~  163 (169)
T d1upta_         125 -----------------------------------------SEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVE  163 (169)
T ss_dssp             -----------------------------------------HHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             -----------------------------------------HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence                                                     011222333445566789999999999999999999998


Q ss_pred             HHH
Q psy17467        248 ELM  250 (730)
Q Consensus       248 ~l~  250 (730)
                      .+.
T Consensus       164 ~l~  166 (169)
T d1upta_         164 TLK  166 (169)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            773

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=1.6e-20  Score=179.34  Aligned_cols=175  Identities=14%  Similarity=0.198  Sum_probs=121.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||++||+.|||||||++||..+.+.  +.||+|.+..  .+...  .+.+++||++|++.+...+..+++.++++++|
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~--~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEY--PFDLQ--SVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEE--EEECS--SCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEE--EEecc--ceeeeeccccccccccccccccccccceeeEe
Confidence            489999999999999999999988874  6799996543  34444  48899999999999999999999999999999


Q ss_pred             eecCCCCch-----------hhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCc
Q psy17467         87 YDISCQPTF-----------DCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDL  155 (730)
Q Consensus        87 yDvtd~eSf-----------e~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL  155 (730)
                      ||.++..++           +.+..|...+....                               ..+.|+++++||.|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~-------------------------------~~~~~~~~v~NK~Dl  124 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITYPW-------------------------------FQNSSVILFLNKKDL  124 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGG-------------------------------GSSSEEEEEEECHHH
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhhhh-------------------------------ccCccEEEecchhhh
Confidence            999987653           23344544443322                               267888999999998


Q ss_pred             chhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH----------hcCC
Q psy17467        156 DEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK----------RHDM  225 (730)
Q Consensus       156 ~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak----------~lg~  225 (730)
                      .+.....     .......|                             |.....-+.+.+..+..          ...+
T Consensus       125 ~~~~~~~-----~~~~~~~~-----------------------------~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~  170 (200)
T d2bcjq2         125 LEEKIMY-----SHLVDYFP-----------------------------EYDGPQRDAQAAREFILKMFVDLNPDSDKII  170 (200)
T ss_dssp             HHHHTTT-----SCHHHHST-----------------------------TCCSCSSCHHHHHHHHHHHHHTTCSCTTSCE
T ss_pred             hhhcccc-----hHHHHhcc-----------------------------cccCCchhHHHHHHHHHHHHHHhcccCCCce
Confidence            7532100     00000000                             11111222333333221          1234


Q ss_pred             eEEEEecCCCCChHHHHHHHHHHHHHH
Q psy17467        226 YYLETSAKASDNVEKLFMQIAAELMEK  252 (730)
Q Consensus       226 ~fvEtSAktG~GVeeLFe~Li~~l~e~  252 (730)
                      .+++|||++|.||+++|+.+.+.+++.
T Consensus       171 ~~~~tSAk~~~ni~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         171 YSHFTCATDTENIRFVFAAVKDTILQL  197 (200)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence            588999999999999999998888643

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=1.4e-20  Score=179.16  Aligned_cols=123  Identities=17%  Similarity=0.238  Sum_probs=89.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||++||+.|||||||++||..+.++.     .|.  ....+...+  +.+++||++|++.+..++..|++.++++++|
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t-----~~~--~~~~~~~~~--~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAG-----TGI--VETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCC-----CSE--EEEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCC-----ccE--EEEEEEeee--eeeeeeccccccccccchhhcccCCceeeeE
Confidence            4899999999999999999999877643     332  223344444  8899999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchh
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDED  158 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~  158 (730)
                      ||+++..+|..+..|...+....               ..+..++.     .....+.|++++|||+|+...
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~---------------~~~~~i~~-----~~~~~~~~~~lv~Nk~d~~~~  124 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESM---------------KLFDSICN-----NKWFTDTSIILFLNKKDLFEE  124 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHH---------------HHHHHHHT-----CGGGTTSEEEEEEECHHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHH---------------HHHHHHhc-----ccccCCCCEEEEeccchhhhh
Confidence            99999999876544322221110               00011111     223367899999999998653

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.82  E-value=6.5e-21  Score=179.74  Aligned_cols=161  Identities=23%  Similarity=0.304  Sum_probs=114.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV   86 (730)
                      .+||+|+|++|||||||++|+.++++.... ++.+..  .......+  +.+.+||+++.+.....+..++..++++++|
T Consensus        15 ~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~-~~~~~~--~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v   89 (177)
T d1zj6a1          15 EHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVV   89 (177)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTSCEEEE-CCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCccc-ccccee--EEEEeecc--eEEEEeccccccccccchhhhhccceeeeee
Confidence            489999999999999999999998876433 444322  23334444  7899999999999999999999999999999


Q ss_pred             eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467         87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL  166 (730)
Q Consensus        87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~  166 (730)
                      +|.++..+++....+........                              ...+.|+++|+||.|+......     
T Consensus        90 ~d~~d~~~~~~~~~~~~~~~~~~------------------------------~~~~~p~iiv~nK~Dl~~~~~~-----  134 (177)
T d1zj6a1          90 VDSTDRERISVTREELYKMLAHE------------------------------DLRKAGLLIFANKQDVKECMTV-----  134 (177)
T ss_dssp             EETTCTTTHHHHHHHHHHHHTSG------------------------------GGTTCEEEEEEECTTSTTCCCH-----
T ss_pred             cccccccchhhhhhhhhhhhhcc------------------------------cccceEEEEEEEcccccccCcH-----
Confidence            99999999988776655543321                              2257788888899888532100     


Q ss_pred             HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467        167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA  246 (730)
Q Consensus       167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li  246 (730)
                                                                +++........+...++++++|||++|+||+++|++|.
T Consensus       135 ------------------------------------------~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L~  172 (177)
T d1zj6a1         135 ------------------------------------------AEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMM  172 (177)
T ss_dssp             ------------------------------------------HHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred             ------------------------------------------HHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHHHHHHH
Confidence                                                      00001111112233467899999999999999999999


Q ss_pred             HHH
Q psy17467        247 AEL  249 (730)
Q Consensus       247 ~~l  249 (730)
                      +.+
T Consensus       173 ~~l  175 (177)
T d1zj6a1         173 SRL  175 (177)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            876

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=1.3e-20  Score=172.78  Aligned_cols=164  Identities=16%  Similarity=0.199  Sum_probs=118.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEee
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYD   88 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyD   88 (730)
                      ||+++|++|||||||+++|+++.+.. +.|+.+...  ....+.+  +...+||++|...+...+..++..++++++|+|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTS--EELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCSCEE--EEECCTT--CCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-eeceeeEeE--EEeccCC--eeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            89999999999999999999998764 457776333  3444444  678999999999999999999999999999999


Q ss_pred             cCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHh
Q psy17467         89 ISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMV  168 (730)
Q Consensus        89 vtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~  168 (730)
                      .++..++.....|+..+....                              ...+.|+++++||.|+........     
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~i~i~~~k~d~~~~~~~~~-----  121 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIA------------------------------ELKDVPFVILGNKIDAPNAVSEAE-----  121 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCT------------------------------TTTTCCEEEEEECTTSSSCCCHHH-----
T ss_pred             ccchhhhhhhhHHHHhhhhhh------------------------------ccCCceEEEEeccccccccCCHHH-----
Confidence            999999988877766654322                              235678899999999864211000     


Q ss_pred             hhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467        169 FVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA  247 (730)
Q Consensus       169 ~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~  247 (730)
                                                     +.++.++.    ...+...+....++.+++|||++|+||+++|++|.+
T Consensus       122 -------------------------------i~~~~~~~----~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         122 -------------------------------LRSALGLL----NTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             -------------------------------HHHHHTCS----SCCC---CCSSCCEEEEEEBTTTTBSHHHHHHHHTT
T ss_pred             -------------------------------HHHHhhhh----hhhHHHhhcccCCCEEEEeeCCCCCCHHHHHHHHhC
Confidence                                           01111111    111122233445678999999999999999999853

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=2.5e-19  Score=171.97  Aligned_cols=179  Identities=21%  Similarity=0.250  Sum_probs=113.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL   85 (730)
                      +++||++||++|||||||++||.   +...+.||+|..  ...+.+++  +.+++||++|++.+...+..++++++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~--~~~~~~~~--~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~   73 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIH--EYDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILF   73 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEE--EEEEEETT--EEEEEEEECC-------CTTSCTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeE--EEEEeeee--eeeeeecccceeeecccccccccccceeEE
Confidence            36999999999999999999994   556677999954  34455555  789999999999999999999999999999


Q ss_pred             EeecCCCCchhhh-------HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchh
Q psy17467         86 VYDISCQPTFDCL-------TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDED  158 (730)
Q Consensus        86 VyDvtd~eSfe~L-------~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~  158 (730)
                      |||.++..++...       ..|...+....                      .     .....++|++|+|||+|+.+.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----------------------~-----~~~~~~~piilv~NK~Dl~~~  126 (200)
T d1zcba2          74 LVSSSEFDQVLMEDRQTNRLTESLNIFETIV----------------------N-----NRVFSNVSIILFLNKTDLLEE  126 (200)
T ss_dssp             EEETTCTTCEETTEEEEEHHHHHHHHHHHHH----------------------T-----CGGGTTSEEEEEEECHHHHHH
T ss_pred             EEEcCCcceeeeecccchhhhHHHHHHHHHh----------------------h-----ChhhcCceEEEEeccchhhhh
Confidence            9999998776432       22322222111                      1     112367899999999998753


Q ss_pred             hHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHh-----------cCCeE
Q psy17467        159 EHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR-----------HDMYY  227 (730)
Q Consensus       159 e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~-----------lg~~f  227 (730)
                      .-.     .......+|                             |-....-..+.+.++...           ..+.+
T Consensus       127 ~~~-----~~~~~~~f~-----------------------------~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~  172 (200)
T d1zcba2         127 KVQ-----VVSIKDYFL-----------------------------EFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYH  172 (200)
T ss_dssp             HTT-----TCCGGGTCT-----------------------------TCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEE
T ss_pred             hcc-----ccHHHHhCc-----------------------------cccCCcchHHHHHHHHHHHHHHhccCCCCCceEE
Confidence            210     000000001                             001111122333332221           13457


Q ss_pred             EEEecCCCCChHHHHHHHHHHHHHH
Q psy17467        228 LETSAKASDNVEKLFMQIAAELMEK  252 (730)
Q Consensus       228 vEtSAktG~GVeeLFe~Li~~l~e~  252 (730)
                      ++|||+++.||+++|+.+.+.+.+.
T Consensus       173 ~~TsA~d~~ni~~vf~~v~d~i~~~  197 (200)
T d1zcba2         173 HFTTAINTENIRLVFRDVKDTILHD  197 (200)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             EEeeeeCcHHHHHHHHHHHHHHHHH
Confidence            7899999999999999988877543

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.79  E-value=5.8e-19  Score=168.25  Aligned_cols=158  Identities=16%  Similarity=0.101  Sum_probs=108.1

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh--------hhhH
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR--------SITQ   74 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~--------sl~~   74 (730)
                      +.+.-.|+|+|.+|||||||+|+|++.+.. ....+..+.+.........+  ..+.+|||||.....        ....
T Consensus         2 ~~~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~   79 (178)
T d1wf3a1           2 KTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVY   79 (178)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHH
T ss_pred             CccCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhcccccc
Confidence            445567999999999999999999987643 23334444445555556666  678999999974322        2223


Q ss_pred             hhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCC
Q psy17467         75 SYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTD  154 (730)
Q Consensus        75 ~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~D  154 (730)
                      .++++||++|+|+|++++.+..+ ..|.+.++..                                ..+.|+++|+||+|
T Consensus        80 ~~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~--------------------------------~~~~piilv~NK~D  126 (178)
T d1wf3a1          80 EALADVNAVVWVVDLRHPPTPED-ELVARALKPL--------------------------------VGKVPILLVGNKLD  126 (178)
T ss_dssp             HHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGG--------------------------------TTTSCEEEEEECGG
T ss_pred             cccccccceeeeechhhhhcccc-cchhhheecc--------------------------------ccchhhhhhhcccc
Confidence            45789999999999988755433 3344444221                                14578888888888


Q ss_pred             cchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC-CeEEEEecC
Q psy17467        155 LDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYLETSAK  233 (730)
Q Consensus       155 L~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg-~~fvEtSAk  233 (730)
                      +....                                                     .+..+.+.+.++ ..+++|||+
T Consensus       127 l~~~~-----------------------------------------------------~~~~~~~~~~~~~~~~~~iSA~  153 (178)
T d1wf3a1         127 AAKYP-----------------------------------------------------EEAMKAYHELLPEAEPRMLSAL  153 (178)
T ss_dssp             GCSSH-----------------------------------------------------HHHHHHHHHTSTTSEEEECCTT
T ss_pred             cccCH-----------------------------------------------------HHHHHHHHhhcccCceEEEecC
Confidence            75311                                                     122344445554 478999999


Q ss_pred             CCCChHHHHHHHHHHH
Q psy17467        234 ASDNVEKLFMQIAAEL  249 (730)
Q Consensus       234 tG~GVeeLFe~Li~~l  249 (730)
                      +|.||+++++.|++.+
T Consensus       154 ~~~gi~~L~~~i~~~l  169 (178)
T d1wf3a1         154 DERQVAELKADLLALM  169 (178)
T ss_dssp             CHHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHhC
Confidence            9999999999997644

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=1.4e-19  Score=168.53  Aligned_cols=150  Identities=19%  Similarity=0.266  Sum_probs=110.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh--------hhhHhhhc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR--------SITQSYYR   78 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~--------sl~~~~~r   78 (730)
                      +||+++|.+|||||||+|+|++.+.. ....|....+.....+...+  ..+.+||++|..+..        .....++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            79999999999999999999987654 33445555455556666677  678899999964322        12235578


Q ss_pred             cccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchh
Q psy17467         79 SAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDED  158 (730)
Q Consensus        79 ~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~  158 (730)
                      .+|++++++|.++..+++....|.+.+....                                .+.|+++|+||+|+.+.
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~iilv~NK~Dl~~~  127 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARLP--------------------------------AKLPITVVRNKADITGE  127 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHSC--------------------------------TTCCEEEEEECHHHHCC
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhcc--------------------------------cccceeeccchhhhhhh
Confidence            9999999999999999888777666554321                                46788889999998531


Q ss_pred             hHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCCh
Q psy17467        159 EHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNV  238 (730)
Q Consensus       159 e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GV  238 (730)
                      .                                            .++             .+..+.+++++||++|.||
T Consensus       128 ~--------------------------------------------~~~-------------~~~~~~~~~~iSAk~~~gi  150 (161)
T d2gj8a1         128 T--------------------------------------------LGM-------------SEVNGHALIRLSARTGEGV  150 (161)
T ss_dssp             C--------------------------------------------CEE-------------EEETTEEEEECCTTTCTTH
T ss_pred             H--------------------------------------------HHH-------------HHhCCCcEEEEECCCCCCH
Confidence            1                                            000             1123568999999999999


Q ss_pred             HHHHHHHHHH
Q psy17467        239 EKLFMQIAAE  248 (730)
Q Consensus       239 eeLFe~Li~~  248 (730)
                      ++++++|.+.
T Consensus       151 ~~L~~~l~~~  160 (161)
T d2gj8a1         151 DVLRNHLKQS  160 (161)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999999875

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.76  E-value=1.8e-18  Score=162.10  Aligned_cols=174  Identities=14%  Similarity=0.110  Sum_probs=113.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII   84 (730)
                      +...||++||++|||||||+++|+++.+.... |+.+...  ..+.+++  ..+.+||+.+...+...+..+++.+++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccee-cccccce--eEEEecc--cccccccccchhhhhhHHhhhhcccceee
Confidence            34589999999999999999999998876543 5555333  3455666  56889999999999889999999999999


Q ss_pred             EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467         85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC  164 (730)
Q Consensus        85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~  164 (730)
                      +|+|+++..++.....++.......                              ...+.|+++++||.|+.......  
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~li~~~K~D~~~~~~~~--  133 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDE------------------------------TIANVPILILGNKIDRPEAISEE--  133 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCG------------------------------GGTTSCEEEEEECTTSTTCCCHH--
T ss_pred             eeeeccCccchHHHHHHHHHhhccc------------------------------ccCCCceEEEEeccCccccCCHH--
Confidence            9999999998887766554443211                              22678999999999985321100  


Q ss_pred             HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccC-CCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHH
Q psy17467        165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM  243 (730)
Q Consensus       165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~-R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe  243 (730)
                                                        .+.++.++.. ...........+...++.+++|||++|+||+++|+
T Consensus       134 ----------------------------------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~  179 (186)
T d1f6ba_         134 ----------------------------------RLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR  179 (186)
T ss_dssp             ----------------------------------HHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHH
T ss_pred             ----------------------------------HHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeCCCCCCHHHHHH
Confidence                                              0001111110 00000111111234466899999999999999999


Q ss_pred             HHHHHH
Q psy17467        244 QIAAEL  249 (730)
Q Consensus       244 ~Li~~l  249 (730)
                      +|++.+
T Consensus       180 ~l~~~i  185 (186)
T d1f6ba_         180 WMAQYI  185 (186)
T ss_dssp             HHHTTC
T ss_pred             HHHHhh
Confidence            998643

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.72  E-value=1.4e-17  Score=158.68  Aligned_cols=158  Identities=20%  Similarity=0.183  Sum_probs=102.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhh----h---hhhHhhhcccc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERF----R---SITQSYYRSAH   81 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~----~---sl~~~~~r~AD   81 (730)
                      .|+++|.+|||||||+|+|++........+..+.+........ .....+++|||||....    .   ......+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEV-SEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEEC-SSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeee-cCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            4899999999999999999987654443333333333322222 22356899999995321    1   11224577899


Q ss_pred             EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467         82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV  161 (730)
Q Consensus        82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~  161 (730)
                      ++++++|+... .++.+..|...+.....                             ...+.|+++|+||+|+.+.+. 
T Consensus        82 ~~~~~~d~~~~-~~~~~~~~~~~~~~~~~-----------------------------~~~~~p~iiv~NK~D~~~~~~-  130 (180)
T d1udxa2          82 VLLYVLDAADE-PLKTLETLRKEVGAYDP-----------------------------ALLRRPSLVALNKVDLLEEEA-  130 (180)
T ss_dssp             EEEEEEETTSC-HHHHHHHHHHHHHHHCH-----------------------------HHHHSCEEEEEECCTTSCHHH-
T ss_pred             hhhhhcccccc-cccchhhhhhhhhcccc-----------------------------ccchhhhhhhhhhhhhhhHHH-
Confidence            99999998653 23444444433322110                             013467888888888864321 


Q ss_pred             HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHH
Q psy17467        162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL  241 (730)
Q Consensus       162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeL  241 (730)
                                                                         .++..+.....+.+++++||++|.||+++
T Consensus       131 ---------------------------------------------------~~~~~~~~~~~~~~~~~iSA~tg~gid~L  159 (180)
T d1udxa2         131 ---------------------------------------------------VKALADALAREGLAVLPVSALTGAGLPAL  159 (180)
T ss_dssp             ---------------------------------------------------HHHHHHHHHTTTSCEEECCTTTCTTHHHH
T ss_pred             ---------------------------------------------------HHHHHHHHHhcCCeEEEEEcCCCCCHHHH
Confidence                                                               12233444556889999999999999999


Q ss_pred             HHHHHHHH
Q psy17467        242 FMQIAAEL  249 (730)
Q Consensus       242 Fe~Li~~l  249 (730)
                      ++.|.+.+
T Consensus       160 ~~~i~~~l  167 (180)
T d1udxa2         160 KEALHALV  167 (180)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998776

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.71  E-value=7.5e-18  Score=167.46  Aligned_cols=121  Identities=19%  Similarity=0.261  Sum_probs=92.2

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA   82 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa   82 (730)
                      -|+.++||++||++|||||||++||..+.+    .||+|..  ...+.+++  +.+++||++|++.++..|..+++++++
T Consensus         2 ~~k~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~--~~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~   73 (221)
T d1azta2           2 VYRATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIF--ETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTA   73 (221)
T ss_dssp             HHHHSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCE--EEEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSE
T ss_pred             cchhcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeE--EEEEEECc--EEEEEEecCccceeccchhhhcccccc
Confidence            367789999999999999999999987654    4788843  44566676  889999999999999999999999999


Q ss_pred             EEEEeecCCCCchhh-------hHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCc
Q psy17467         83 LILVYDISCQPTFDC-------LTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDL  155 (730)
Q Consensus        83 IILVyDvtd~eSfe~-------L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL  155 (730)
                      +++|+|+++..++..       +.+++..+..                      +++...+     .++|++|+|||+|+
T Consensus        74 ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~----------------------il~~~~~-----~~~~iil~~NK~Dl  126 (221)
T d1azta2          74 IIFVVASSSYNMVIREDNQTNRLQEALNLFKS----------------------IWNNRWL-----RTISVILFLNKQDL  126 (221)
T ss_dssp             EEEEEETTGGGCBCTTTSCSBHHHHHHHHHHH----------------------HHTCGGG-----SSCEEEEEEECHHH
T ss_pred             eEEEEEccccccccccccchHHHHHHHHHHHH----------------------HhcChhh-----CCCcEEEEechhhh
Confidence            999999997654432       2222222222                      2222222     67899999999999


Q ss_pred             chh
Q psy17467        156 DED  158 (730)
Q Consensus       156 ~~~  158 (730)
                      .+.
T Consensus       127 ~~~  129 (221)
T d1azta2         127 LAE  129 (221)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            764

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.70  E-value=2.4e-17  Score=152.99  Aligned_cols=89  Identities=24%  Similarity=0.256  Sum_probs=63.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh---------hhhHhhh
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR---------SITQSYY   77 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~---------sl~~~~~   77 (730)
                      +||+++|.+|||||||+|+|++.+.. ....+..+.......+..++  ..+.+|||||.....         ......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            69999999999999999999976543 33334444444455666676  678999999942110         1122346


Q ss_pred             ccccEEEEEeecCCCCchhhh
Q psy17467         78 RSAHALILVYDISCQPTFDCL   98 (730)
Q Consensus        78 r~ADaIILVyDvtd~eSfe~L   98 (730)
                      ..+|++++|+|.+++.+.+..
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~   99 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDR   99 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHH
T ss_pred             HhCCEEEEEEeCCCCcchhhh
Confidence            789999999999988766543

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.70  E-value=9.6e-17  Score=151.48  Aligned_cols=154  Identities=20%  Similarity=0.205  Sum_probs=98.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh---------hhhhhHhhhc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPP-GQGATIGVDFMIKTVEINNERIKLQIWDTAGQER---------FRSITQSYYR   78 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~-~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~---------~~sl~~~~~r   78 (730)
                      .|+|+|.+|||||||+++|++..... ...+..+.......+...+  ..+.+||++|...         +......++.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc--cccccccccceeeeeccccccccccccccccc
Confidence            58999999999999999999866532 2223333233334444455  6789999998422         1222334577


Q ss_pred             cccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchh
Q psy17467         79 SAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDED  158 (730)
Q Consensus        79 ~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~  158 (730)
                      .||+++++.|.++....+. ..|+..+..                                  .+.|+++|+||+|+.+.
T Consensus        80 ~ad~i~~~~~~~~~~~~~~-~~~~~~l~~----------------------------------~~~pviiv~NK~Dl~~~  124 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKED-ESLADFLRK----------------------------------STVDTILVANKAENLRE  124 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHH-HHHHHHHHH----------------------------------HTCCEEEEEESCCSHHH
T ss_pred             cCcEEEEeecccccccccc-ccccccccc----------------------------------ccccccccchhhhhhhh
Confidence            8999999999877655543 345444433                                  24678888999998643


Q ss_pred             hHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCCh
Q psy17467        159 EHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNV  238 (730)
Q Consensus       159 e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GV  238 (730)
                      ..                                                    .+...++.+.....++++||++|.||
T Consensus       125 ~~----------------------------------------------------~~~~~~~~~~~~~~~i~iSAk~g~gi  152 (171)
T d1mkya1         125 FE----------------------------------------------------REVKPELYSLGFGEPIPVSAEHNINL  152 (171)
T ss_dssp             HH----------------------------------------------------HHTHHHHGGGSSCSCEECBTTTTBSH
T ss_pred             hh----------------------------------------------------hHHHHHHHhcCCCCeEEEecCCCCCH
Confidence            21                                                    12222333333346799999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy17467        239 EKLFMQIAAELME  251 (730)
Q Consensus       239 eeLFe~Li~~l~e  251 (730)
                      ++++++|++.+.+
T Consensus       153 d~L~~~i~~~l~e  165 (171)
T d1mkya1         153 DTMLETIIKKLEE  165 (171)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCC
Confidence            9999999987743

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.68  E-value=2.6e-16  Score=150.78  Aligned_cols=163  Identities=15%  Similarity=0.167  Sum_probs=105.3

Q ss_pred             CCCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCC-Ccc----eeeE--EEEEEEeCCeEEEEEEEeCCCchhhhhhh
Q psy17467          1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQG-ATI----GVDF--MIKTVEINNERIKLQIWDTAGQERFRSIT   73 (730)
Q Consensus         1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~-pTi----g~d~--~~~~i~vdg~~v~LqLwDTpG~e~~~sl~   73 (730)
                      |+.++  ++|+++|.+|+|||||+|+|++........ .+.    |...  ....+..++  ..+.++|++|+.++....
T Consensus         1 ~~~k~--inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~   76 (179)
T d1wb1a4           1 MDFKN--INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAV   76 (179)
T ss_dssp             CCCEE--EEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHH
T ss_pred             CCCCC--EEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccch
Confidence            55554  799999999999999999999643222111 111    1111  111222344  678899999999988888


Q ss_pred             HhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCC
Q psy17467         74 QSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKT  153 (730)
Q Consensus        74 ~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~  153 (730)
                      ...+..+|++++|+|+++....+...-| ..+..                                  .+.|+++|.||+
T Consensus        77 ~~~l~~~d~~ilv~d~~~g~~~~~~~~~-~~~~~----------------------------------~~~p~iiv~NKi  121 (179)
T d1wb1a4          77 VSAADIIDLALIVVDAKEGPKTQTGEHM-LILDH----------------------------------FNIPIIVVITKS  121 (179)
T ss_dssp             HHHTTSCCEEEEEEETTTCSCHHHHHHH-HHHHH----------------------------------TTCCBCEEEECT
T ss_pred             hhhhhhccccccccccccccchhhhhhh-hhhhh----------------------------------cCCcceeccccc
Confidence            8888999999999999986554432212 22211                                  457888999999


Q ss_pred             CcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHh----cCCeEEE
Q psy17467        154 DLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR----HDMYYLE  229 (730)
Q Consensus       154 DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~----lg~~fvE  229 (730)
                      |+...+....                                                ..+..+.+.+.    .+.++++
T Consensus       122 D~~~~~~~~~------------------------------------------------~~~~~~~~~~~~~~~~~~~iv~  153 (179)
T d1wb1a4         122 DNAGTEEIKR------------------------------------------------TEMIMKSILQSTHNLKNSSIIP  153 (179)
T ss_dssp             TSSCHHHHHH------------------------------------------------HHHHHHHHHHHSSSGGGCCEEE
T ss_pred             cccCHHHHHH------------------------------------------------HHHHHHHHHHHhhcCCCCeEEE
Confidence            9875432100                                                01111222221    2458999


Q ss_pred             EecCCCCChHHHHHHHHHHHH
Q psy17467        230 TSAKASDNVEKLFMQIAAELM  250 (730)
Q Consensus       230 tSAktG~GVeeLFe~Li~~l~  250 (730)
                      |||++|+|++++++.|++.+.
T Consensus       154 iSA~~g~gi~eL~~~I~~~l~  174 (179)
T d1wb1a4         154 ISAKTGFGVDELKNLIITTLN  174 (179)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEccCCcCHHHHHHHHHhcCC
Confidence            999999999999999988763

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=3.6e-16  Score=151.94  Aligned_cols=119  Identities=24%  Similarity=0.332  Sum_probs=89.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh-hhhHhhhccccEEEEEe
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR-SITQSYYRSAHALILVY   87 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~-sl~~~~~r~ADaIILVy   87 (730)
                      +|+|+|++|||||||+++|+++.+...+ |+++.+.....+. ++..+.+.+||++|++.+. ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECS-STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEEe-eeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            5999999999999999999999887654 7776555433322 4456789999999998875 46788899999999999


Q ss_pred             ecCCCCch-hhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467         88 DISCQPTF-DCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE  157 (730)
Q Consensus        88 Dvtd~eSf-e~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~  157 (730)
                      |+++..++ ....+|+.++....                            .....++|++||+||+|+..
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~----------------------------~~~~~~~pilvv~NK~Dl~~  122 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDS----------------------------MALKNSPSLLIACNKQDIAM  122 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHH----------------------------HTSTTCCEEEEEEECTTSTT
T ss_pred             EcccccccHHHHHHHHHHHHHhH----------------------------HHhhcCCcEEEEEECcccCC
Confidence            99987664 45555555543322                            01235678899999999864

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.66  E-value=3.5e-16  Score=148.01  Aligned_cols=78  Identities=23%  Similarity=0.352  Sum_probs=55.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCch-----------h----hhhhh
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE-----------R----FRSIT   73 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e-----------~----~~sl~   73 (730)
                      .|+++|.+|||||||+|++++.+......|..+.+  ...+...+    +.+|||||..           .    +....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~--~~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeec--cccccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence            58999999999999999999887765555544433  23344444    6789999941           1    11122


Q ss_pred             HhhhccccEEEEEeecCCC
Q psy17467         74 QSYYRSAHALILVYDISCQ   92 (730)
Q Consensus        74 ~~~~r~ADaIILVyDvtd~   92 (730)
                      ...++.+|++++|+|.+..
T Consensus        76 ~~~~~~~d~~~~vvD~~~~   94 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAA   94 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHH
T ss_pred             hhcccccchheeeeecccc
Confidence            3446789999999998643

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.65  E-value=8.1e-16  Score=146.26  Aligned_cols=159  Identities=19%  Similarity=0.114  Sum_probs=100.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh------------h
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS------------I   72 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s------------l   72 (730)
                      ..+||+|+|.+|||||||+|+|++.... ....+..+.......+.+++  ..+.++|++|......            .
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~   84 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSNYR   84 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC--ceeeeeccCCccccccccccccccchhHH
Confidence            3599999999999999999999986542 22333333344444566677  5678899998643222            2


Q ss_pred             hHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccC
Q psy17467         73 TQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDK  152 (730)
Q Consensus        73 ~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK  152 (730)
                      ....++.+|++++|+|++....-+. ..++..+..                                  .+.|+++|+||
T Consensus        85 ~~~~~~~~dvii~v~d~~~~~~~~~-~~~~~~~~~----------------------------------~~~~~i~v~nK  129 (186)
T d1mkya2          85 VVDSIEKADVVVIVLDATQGITRQD-QRMAGLMER----------------------------------RGRASVVVFNK  129 (186)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH----------------------------------TTCEEEEEEEC
T ss_pred             HHHHHhcCCEEEEeecccccchhhH-HHHHHHHHH----------------------------------cCCceeeeccc
Confidence            2345678999999999986544322 233333322                                  35678888999


Q ss_pred             CCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHH-HHH----hcCCeE
Q psy17467        153 TDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGED-FAK----RHDMYY  227 (730)
Q Consensus       153 ~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~-lak----~lg~~f  227 (730)
                      +|+....+                                                  ...++..+ +.+    ...+++
T Consensus       130 ~D~~~~~~--------------------------------------------------~~~~~~~~~~~~~~~~~~~~~i  159 (186)
T d1mkya2         130 WDLVVHRE--------------------------------------------------KRYDEFTKLFREKLYFIDYSPL  159 (186)
T ss_dssp             GGGSTTGG--------------------------------------------------GCHHHHHHHHHHHCGGGTTSCE
T ss_pred             hhhhcchh--------------------------------------------------hhhhhHHHHHHHHhcccCCCeE
Confidence            99853211                                                  01111111 111    124579


Q ss_pred             EEEecCCCCChHHHHHHHHHHHHH
Q psy17467        228 LETSAKASDNVEKLFMQIAAELME  251 (730)
Q Consensus       228 vEtSAktG~GVeeLFe~Li~~l~e  251 (730)
                      +++||++|.||++|++.|.+.+..
T Consensus       160 ~~vSa~~g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         160 IFTSADKGWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999776643

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.64  E-value=1.8e-16  Score=151.13  Aligned_cols=160  Identities=19%  Similarity=0.189  Sum_probs=100.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh----hhhH---hhhcccc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR----SITQ---SYYRSAH   81 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~----sl~~---~~~r~AD   81 (730)
                      +|+|+|.+|||||||+|+|++........+..+.+.......+.+. ..+.+|||||..+..    .+..   ..+..++
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~-~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR   81 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCC-cEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence            5999999999999999999987654443344433443444444321 357899999963321    1222   3356789


Q ss_pred             EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467         82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV  161 (730)
Q Consensus        82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~  161 (730)
                      +++++.+............+........                       .   ......+.|+++|+||+|+.+..  
T Consensus        82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~-----------------------~---~~~~~~~kp~ivv~NK~Dl~~~~--  133 (185)
T d1lnza2          82 VIVHVIDMSGLEGRDPYDDYLTINQELS-----------------------E---YNLRLTERPQIIVANKMDMPEAA--  133 (185)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHH-----------------------H---SCSSTTTSCBCBEEECTTSTTHH--
T ss_pred             hhhheeeecccccchhhhhhhhhhhccc-----------------------h---hhhhccCCcchhhccccchHhHH--
Confidence            9999998877666554433222211111                       0   01122356777777777775321  


Q ss_pred             HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc--CCeEEEEecCCCCChH
Q psy17467        162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH--DMYYLETSAKASDNVE  239 (730)
Q Consensus       162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l--g~~fvEtSAktG~GVe  239 (730)
                                                                          +..+.+.+.+  +.+++.+||++|.||+
T Consensus       134 ----------------------------------------------------~~~~~~~~~~~~~~~v~~iSA~~g~Gi~  161 (185)
T d1lnza2         134 ----------------------------------------------------ENLEAFKEKLTDDYPVFPISAVTREGLR  161 (185)
T ss_dssp             ----------------------------------------------------HHHHHHHHHCCSCCCBCCCSSCCSSTTH
T ss_pred             ----------------------------------------------------HHHHHHHHHhccCCcEEEEECCCCCCHH
Confidence                                                                1223333333  5688999999999999


Q ss_pred             HHHHHHHHHH
Q psy17467        240 KLFMQIAAEL  249 (730)
Q Consensus       240 eLFe~Li~~l  249 (730)
                      ++++.|.+.+
T Consensus       162 ~L~~~i~~~L  171 (185)
T d1lnza2         162 ELLFEVANQL  171 (185)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999998776

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.54  E-value=5.5e-15  Score=147.24  Aligned_cols=113  Identities=20%  Similarity=0.184  Sum_probs=74.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEE----------------EeCCeEEEEEEEeCCCchhhhhhh
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTV----------------EINNERIKLQIWDTAGQERFRSIT   73 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i----------------~vdg~~v~LqLwDTpG~e~~~sl~   73 (730)
                      |+|+|.+|+|||||++++++..........++........                .++.....+.++||||+..|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            9999999999999999998643211111111100001111                112233578999999999988877


Q ss_pred             HhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCC
Q psy17467         74 QSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKT  153 (730)
Q Consensus        74 ~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~  153 (730)
                      ...+..||++|+|+|+.+.-+-+... .+..+..                                  .+.|+++|.||+
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~~~-~~~~~~~----------------------------------~~~p~iivlNK~  132 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQTQE-ALNILRM----------------------------------YRTPFVVAANKI  132 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHHHH-HHHHHHH----------------------------------TTCCEEEEEECG
T ss_pred             hhcccccceEEEEEecccCcccchhH-HHHHhhc----------------------------------CCCeEEEEEECc
Confidence            77889999999999998755444322 2222211                                  467888999999


Q ss_pred             Ccch
Q psy17467        154 DLDE  157 (730)
Q Consensus       154 DL~~  157 (730)
                      |+..
T Consensus       133 D~~~  136 (227)
T d1g7sa4         133 DRIH  136 (227)
T ss_dssp             GGST
T ss_pred             cCCC
Confidence            9865

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.52  E-value=3e-14  Score=136.87  Aligned_cols=153  Identities=12%  Similarity=0.147  Sum_probs=88.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh----------hhh---hhH
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER----------FRS---ITQ   74 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~----------~~s---l~~   74 (730)
                      -+|+|+|.+|||||||+|+|++.+......+..+.+..........   .+.+.|++|...          ...   ...
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  100 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETYI  100 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHHhhhh
Confidence            3899999999999999999998654222222222222222222222   244566665311          111   112


Q ss_pred             hhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCC
Q psy17467         75 SYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTD  154 (730)
Q Consensus        75 ~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~D  154 (730)
                      ..+..+|++++|+|++++..-+. .++++.+..                                  .+.|+++|+||+|
T Consensus       101 ~~~~~~~~vi~viD~~~~~~~~~-~~~~~~l~~----------------------------------~~~piivv~NK~D  145 (195)
T d1svia_         101 TTREELKAVVQIVDLRHAPSNDD-VQMYEFLKY----------------------------------YGIPVIVIATKAD  145 (195)
T ss_dssp             HHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHH----------------------------------TTCCEEEEEECGG
T ss_pred             ccccchhhhhhhhhccccccccc-ccccccccc----------------------------------ccCcceechhhcc
Confidence            33456799999999886543222 233443322                                  3567888899999


Q ss_pred             cchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHH----HHHHhcCCeEEEE
Q psy17467        155 LDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGE----DFAKRHDMYYLET  230 (730)
Q Consensus       155 L~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~----~lak~lg~~fvEt  230 (730)
                      +......                                                   .+..+    .+....+.+++.+
T Consensus       146 ~~~~~~~---------------------------------------------------~~~~~~~~~~l~~~~~~~~~~~  174 (195)
T d1svia_         146 KIPKGKW---------------------------------------------------DKHAKVVRQTLNIDPEDELILF  174 (195)
T ss_dssp             GSCGGGH---------------------------------------------------HHHHHHHHHHHTCCTTSEEEEC
T ss_pred             ccCHHHH---------------------------------------------------HHHHHHHHHHhcccCCCCEEEE
Confidence            7532211                                                   11122    2222345689999


Q ss_pred             ecCCCCChHHHHHHHHHHH
Q psy17467        231 SAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       231 SAktG~GVeeLFe~Li~~l  249 (730)
                      ||++|.|++++++.|.+.+
T Consensus       175 SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         175 SSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             CTTTCTTHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999998765

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.49  E-value=3e-13  Score=130.82  Aligned_cols=165  Identities=17%  Similarity=0.148  Sum_probs=103.9

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCC---C--CcceeeEEEEEEEe-------------------CCeEEEEE
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQ---G--ATIGVDFMIKTVEI-------------------NNERIKLQ   59 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~---~--pTig~d~~~~~i~v-------------------dg~~v~Lq   59 (730)
                      ++..++|+++|..++|||||++++++.......   .  -+....+......-                   ......+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            456789999999999999999999874322111   0  11111111111110                   11235689


Q ss_pred             EEeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhccccc
Q psy17467         60 IWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCT  139 (730)
Q Consensus        60 LwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~  139 (730)
                      ++||||+.+|.......+..+|++++|.|+.+...-+...+.+..+....                              
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~------------------------------  131 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG------------------------------  131 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT------------------------------
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc------------------------------
Confidence            99999999998887778889999999999987643333333222222211                              


Q ss_pred             CCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHH
Q psy17467        140 VDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDF  219 (730)
Q Consensus       140 ~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~l  219 (730)
                         ..+++++.||+|+.+......                                                ..+...++
T Consensus       132 ---~~~iiv~inK~D~~d~~~~~~------------------------------------------------~~~~~~~~  160 (195)
T d1kk1a3         132 ---QKNIIIAQNKIELVDKEKALE------------------------------------------------NYRQIKEF  160 (195)
T ss_dssp             ---CCCEEEEEECGGGSCHHHHHH------------------------------------------------HHHHHHHH
T ss_pred             ---CccceeeeecccchhhHHHHH------------------------------------------------HHHHHHHH
Confidence               124567789999876432111                                                01223333


Q ss_pred             HHhc---CCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467        220 AKRH---DMYYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       220 ak~l---g~~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                      ....   .++++++||++|+||++|++.+.+.+
T Consensus       161 ~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         161 IEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             hccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            3333   36899999999999999999887643

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=7e-13  Score=124.40  Aligned_cols=158  Identities=16%  Similarity=0.116  Sum_probs=96.8

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh---------hh
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPG-QGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS---------IT   73 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~-~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s---------l~   73 (730)
                      +.|.-.|+|+|.+|||||||+|+|++.+.... +.++............+.  ..+..||++|......         ..
T Consensus         2 ~~~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (179)
T d1egaa1           2 KSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAA   79 (179)
T ss_dssp             CCEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCT
T ss_pred             CccccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC--ceeEeecCCCceecchhhhhhhhhhcc
Confidence            44556799999999999999999998765422 223333233334444455  4566788887532211         11


Q ss_pred             HhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCC
Q psy17467         74 QSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKT  153 (730)
Q Consensus        74 ~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~  153 (730)
                      ......+++++++.|.++..  .....+...+.+                                  ...|+++|.||+
T Consensus        80 ~~~~~~~~~~l~~~d~~~~~--~~~~~~~~~l~~----------------------------------~~~~~i~v~~k~  123 (179)
T d1egaa1          80 SSSIGDVELVIFVVEGTRWT--PDDEMVLNKLRE----------------------------------GKAPVILAVNKV  123 (179)
T ss_dssp             TSCCCCEEEEEEEEETTCCC--HHHHHHHHHHHS----------------------------------SSSCEEEEEEST
T ss_pred             ccchhhcceeEEEEecCccc--hhHHHHHHHhhh----------------------------------ccCceeeeeeee
Confidence            12244678888888876532  222222222221                                  345677777888


Q ss_pred             CcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC-CeEEEEec
Q psy17467        154 DLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYLETSA  232 (730)
Q Consensus       154 DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg-~~fvEtSA  232 (730)
                      |...+.                                            .|+      ....+.+...++ .+++++||
T Consensus       124 d~~~~~--------------------------------------------~~~------~~~~~~~~~~~~~~~~~~vSA  153 (179)
T d1egaa1         124 DNVQEK--------------------------------------------ADL------LPHLQFLASQMNFLDIVPISA  153 (179)
T ss_dssp             TTCCCH--------------------------------------------HHH------HHHHHHHHTTSCCSEEEECCT
T ss_pred             eccchh--------------------------------------------hhh------hhHhhhhhhhcCCCCEEEEeC
Confidence            875421                                            111      233455555565 58999999


Q ss_pred             CCCCChHHHHHHHHHHH
Q psy17467        233 KASDNVEKLFMQIAAEL  249 (730)
Q Consensus       233 ktG~GVeeLFe~Li~~l  249 (730)
                      ++|.||++|++.|.+.+
T Consensus       154 ~~g~gi~~L~~~i~~~l  170 (179)
T d1egaa1         154 ETGLNVDTIAAIVRKHL  170 (179)
T ss_dssp             TTTTTHHHHHHHHHTTC
T ss_pred             cCCCCHHHHHHHHHHhC
Confidence            99999999999987654

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=8.8e-14  Score=133.63  Aligned_cols=117  Identities=17%  Similarity=0.295  Sum_probs=84.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhh----hccccEE
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSY----YRSAHAL   83 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~----~r~ADaI   83 (730)
                      -.|+|+|++|||||||+|+|+++++..    +++.+.....+..++  ..+.+||+||+..+...+..+    ...++.+
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~~~~----~tt~~~~~~~~~~~~--~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~   77 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLSAADYDG--SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGL   77 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSSCCC----BCCCSSCEEETTGGG--SSCEEEECCCCGGGTHHHHHHHHHHGGGEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCC----eEEecceEEEEEeCC--eEEEEEecccccchhhHHHHHHHHHhhhcccc
Confidence            479999999999999999999987653    333333344444444  568999999998776655544    4456888


Q ss_pred             EEEeecC-CCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467         84 ILVYDIS-CQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE  157 (730)
Q Consensus        84 ILVyDvt-d~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~  157 (730)
                      ++++|+. +..+++.+..|+.++.....                           .....+.|+++|+||+|+..
T Consensus        78 i~~vd~~~~~~~~~~~~~~l~~~~~~~~---------------------------~~~~~~~piiiv~NK~D~~~  125 (209)
T d1nrjb_          78 IFMVDSTVDPKKLTTTAEFLVDILSITE---------------------------SSCENGIDILIACNKSELFT  125 (209)
T ss_dssp             EEEEETTSCTTCCHHHHHHHHHHHHHHH---------------------------HHSTTCCCEEEEEECTTSTT
T ss_pred             ceEEEEecccccHHHHHHHHHHHHHHHH---------------------------HHHhccCCeEEEEEeecccc
Confidence            9899866 57888888888776543221                           11236789999999999865

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.40  E-value=4e-12  Score=124.06  Aligned_cols=164  Identities=18%  Similarity=0.153  Sum_probs=99.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCC-----CCcceeeEEEEEEEe------------------------CCeE
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQ-----GATIGVDFMIKTVEI------------------------NNER   55 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~-----~pTig~d~~~~~i~v------------------------dg~~   55 (730)
                      +..++|+++|..++|||||+++|++..-....     ..+.........+..                        ....
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            45589999999999999999999863211000     000000000111111                        0112


Q ss_pred             EEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhc
Q psy17467         56 IKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAG  135 (730)
Q Consensus        56 v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g  135 (730)
                      ..+.++|+||+.+|.......+..||++|+|.|+.+...-...++.+..+..                          . 
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~--------------------------~-  138 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI--------------------------I-  138 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHH--------------------------T-
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHH--------------------------c-
Confidence            4689999999999988777778899999999999875322222222222111                          1 


Q ss_pred             ccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHH
Q psy17467        136 LLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEV  215 (730)
Q Consensus       136 ~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee  215 (730)
                            .-.|++++.||+|+.+......                                                ..++
T Consensus       139 ------~i~~iIV~vNK~Dl~~~~~~~~------------------------------------------------~~~~  164 (205)
T d2qn6a3         139 ------GVKNLIIVQNKVDVVSKEEALS------------------------------------------------QYRQ  164 (205)
T ss_dssp             ------TCCCEEEEEECGGGSCHHHHHH------------------------------------------------HHHH
T ss_pred             ------CCceeeeccccCCCccchHHHH------------------------------------------------HHHH
Confidence                  1136778889999976432110                                                0112


Q ss_pred             HHHHHHhc---CCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467        216 GEDFAKRH---DMYYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       216 ~~~lak~l---g~~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                      ...+....   +++++++||++|.||+++++.+...+
T Consensus       165 ~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         165 IKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             HHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence            22222222   36899999999999999999877643

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.35  E-value=2.2e-12  Score=126.31  Aligned_cols=91  Identities=18%  Similarity=0.094  Sum_probs=64.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcC-----CCCC---------CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQG-----VFPP---------GQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS   71 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~-----~f~~---------~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s   71 (730)
                      ..++|+++|..++|||||++++++.     ....         .....-|.+.......+......+.++||||+.+|..
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~   81 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHH
Confidence            4589999999999999999999741     0000         0011122333333444444447799999999999988


Q ss_pred             hhHhhhccccEEEEEeecCCCCchh
Q psy17467         72 ITQSYYRSAHALILVYDISCQPTFD   96 (730)
Q Consensus        72 l~~~~~r~ADaIILVyDvtd~eSfe   96 (730)
                      .....+..||++|+|+|+.+...-+
T Consensus        82 ~~~~~~~~aD~allVVda~~G~~~Q  106 (196)
T d1d2ea3          82 NMITGTAPLDGCILVVAANDGPMPQ  106 (196)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHH
T ss_pred             HHHHHHhhcCeEEEEEEcCCCCchh
Confidence            7777889999999999999865433

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=9.8e-12  Score=115.96  Aligned_cols=31  Identities=16%  Similarity=0.196  Sum_probs=24.7

Q ss_pred             CcceeEEEEEcCCCCCHHHHHHHHHcCCCCC
Q psy17467          4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPP   34 (730)
Q Consensus         4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~   34 (730)
                      .+..++|+++|.+|||||||+|++++.+...
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~   43 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLA   43 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC----
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCCCceE
Confidence            4567999999999999999999999876543

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.25  E-value=1.1e-11  Score=121.60  Aligned_cols=94  Identities=16%  Similarity=0.083  Sum_probs=68.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcC--------CCCC----CCCC-----cceeeEEEEEEEeCCeEEEEEEEeCCCchh
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQG--------VFPP----GQGA-----TIGVDFMIKTVEINNERIKLQIWDTAGQER   68 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~--------~f~~----~~~p-----Tig~d~~~~~i~vdg~~v~LqLwDTpG~e~   68 (730)
                      ..++|+++|..++|||||+++|+..        ....    ...+     .++.+.....+.+++  ..+.|+||||+.+
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~--~~i~iiDtPGh~d   79 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHAD   79 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC--eEEEEEeCCCchh
Confidence            4589999999999999999999731        1100    0101     233333444555666  6789999999999


Q ss_pred             hhhhhHhhhccccEEEEEeecCCCCchhhhHHH
Q psy17467         69 FRSITQSYYRSAHALILVYDISCQPTFDCLTDW  101 (730)
Q Consensus        69 ~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~w  101 (730)
                      |.......+..||++|||+|+++....+....|
T Consensus        80 f~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~  112 (204)
T d2c78a3          80 YIKNMITGAAQMDGAILVVSAADGPMPQTREHI  112 (204)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHH
T ss_pred             hHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHH
Confidence            988777888999999999999988777654433

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.22  E-value=8.7e-11  Score=116.98  Aligned_cols=92  Identities=18%  Similarity=0.259  Sum_probs=63.7

Q ss_pred             CCcceeEEEEEcCCCCCHHHHHHHHHc--CCCCC-------------------------------CCCCcceeeEEEEEE
Q psy17467          3 DYKFLFKVVLVGNAGVGKTCLVRRFTQ--GVFPP-------------------------------GQGATIGVDFMIKTV   49 (730)
Q Consensus         3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~--~~f~~-------------------------------~~~pTig~d~~~~~i   49 (730)
                      +++..+||+++|..++|||||+.+|+.  +....                               .....++.+......
T Consensus         5 ~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~   84 (222)
T d1zunb3           5 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF   84 (222)
T ss_dssp             TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred             ccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEE
Confidence            455679999999999999999999963  11100                               000112222223333


Q ss_pred             EeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCchh
Q psy17467         50 EINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFD   96 (730)
Q Consensus        50 ~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe   96 (730)
                      ..++  ..+.++|+||+..|......-...+|++|+|+|+.+...-+
T Consensus        85 ~~~~--~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Q  129 (222)
T d1zunb3          85 STAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ  129 (222)
T ss_dssp             ECSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH
T ss_pred             eccc--eEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccc
Confidence            3344  67899999999999887777888999999999998764433

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.04  E-value=1.2e-09  Score=111.78  Aligned_cols=92  Identities=18%  Similarity=0.208  Sum_probs=68.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC--CCCC-----------CC-----CCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG--VFPP-----------GQ-----GATIGVDFMIKTVEINNERIKLQIWDTAGQERFR   70 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~--~f~~-----------~~-----~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~   70 (730)
                      +|+|+|..++|||||+.+++..  ....           .+     ...++.......+.+++  ..+.++||||+.+|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF~   81 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGGH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhhh
Confidence            5999999999999999999631  1100           00     01122233445666777  678999999999999


Q ss_pred             hhhHhhhccccEEEEEeecCCCCchhhhHHHH
Q psy17467         71 SITQSYYRSAHALILVYDISCQPTFDCLTDWL  102 (730)
Q Consensus        71 sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wl  102 (730)
                      .-....++-+|++|+|+|..+...-+...-|.
T Consensus        82 ~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~  113 (267)
T d2dy1a2          82 GEIRGALEAADAALVAVSAEAGVQVGTERAWT  113 (267)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH
T ss_pred             hhhhhhhcccCceEEEeeccCCccchhHHHHH
Confidence            88888999999999999999887776665553

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.99  E-value=6.2e-10  Score=114.38  Aligned_cols=110  Identities=20%  Similarity=0.264  Sum_probs=76.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc--CCCCC----------------CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ--GVFPP----------------GQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR   70 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~--~~f~~----------------~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~   70 (730)
                      +|+++|..++|||||+.+++.  +....                .....+++......+.+++  ..++|+||||+.+|.
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~~dF~   85 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGHVDFT   85 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSSSSCS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCchhhhH
Confidence            699999999999999999863  11100                0001112222334556666  779999999999999


Q ss_pred             hhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCch
Q psy17467         71 SITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL  124 (730)
Q Consensus        71 sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl  124 (730)
                      .-....++-+|++|+|+|..+.-.-+..+-|-.- .   ..+.|.+++.||.|.
T Consensus        86 ~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a-~---~~~lP~i~fINKmDr  135 (276)
T d2bv3a2          86 IEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA-E---KYKVPRIAFANKMDK  135 (276)
T ss_dssp             TTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHH-H---TTTCCEEEEEECTTS
T ss_pred             HHHHHHHHhhhheEEeccccCCcchhHHHHHHHH-H---HcCCCEEEEEecccc
Confidence            8888899999999999999998877766656332 2   224555666555333

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.91  E-value=3.4e-09  Score=113.79  Aligned_cols=82  Identities=15%  Similarity=0.213  Sum_probs=48.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCC---cceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhH-----hhhc
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGA---TIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQ-----SYYR   78 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~p---Tig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~-----~~~r   78 (730)
                      .++|+|+|.+|||||||+|.+++.........   ..+.+.........+ .-.+.+|||||.........     ....
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~-~~~~~l~DtPG~~~~~~~~~~~~~~~~~~  134 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKFY  134 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccC-CCeEEEEeCCCcccccccHHHHHHHhhhh
Confidence            48999999999999999999998543221111   111111112222222 12477999999754332222     2356


Q ss_pred             cccEEEEEeec
Q psy17467         79 SAHALILVYDI   89 (730)
Q Consensus        79 ~ADaIILVyDv   89 (730)
                      .+|++|++.|.
T Consensus       135 ~~d~~l~~~~~  145 (400)
T d1tq4a_         135 EYDFFIIISAT  145 (400)
T ss_dssp             GCSEEEEEESS
T ss_pred             cceEEEEecCC
Confidence            78988888774

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.88  E-value=1.1e-09  Score=110.24  Aligned_cols=85  Identities=15%  Similarity=0.175  Sum_probs=47.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHc--CCCC-----------------------------CCCCCcceeeEEEEEEEeCCe
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQ--GVFP-----------------------------PGQGATIGVDFMIKTVEINNE   54 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~--~~f~-----------------------------~~~~pTig~d~~~~~i~vdg~   54 (730)
                      ..++|+++|..++|||||+.+|+.  +...                             ......+..+.......+++ 
T Consensus        23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~-  101 (245)
T d1r5ba3          23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH-  101 (245)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS-
T ss_pred             CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc-
Confidence            357999999999999999999952  1100                             00000111111122223333 


Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCC
Q psy17467         55 RIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQ   92 (730)
Q Consensus        55 ~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~   92 (730)
                       ..+.+.||||+..|......-...+|++|+|.|+.+.
T Consensus       102 -~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G  138 (245)
T d1r5ba3         102 -RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRG  138 (245)
T ss_dssp             -EEEEECCCCC-----------TTSCSEEEEEEECSTT
T ss_pred             -ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCC
Confidence             6789999999999988777788899999999999874

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.87  E-value=7.9e-10  Score=109.35  Aligned_cols=85  Identities=20%  Similarity=0.280  Sum_probs=58.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHc--CCCC-----------------------------CCCCCcceeeEEEEEEEeCCe
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQ--GVFP-----------------------------PGQGATIGVDFMIKTVEINNE   54 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~--~~f~-----------------------------~~~~pTig~d~~~~~i~vdg~   54 (730)
                      ..++|+++|.-++|||||+.+|+.  +...                             ......++.+.......+++ 
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~-   80 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK-   80 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS-
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCC-
Confidence            358999999999999999999853  1000                             00011111122222333444 


Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCC
Q psy17467         55 RIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQ   92 (730)
Q Consensus        55 ~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~   92 (730)
                       ..+.|+||||+.+|........+-+|++|+|+|+.+.
T Consensus        81 -~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G  117 (224)
T d1jnya3          81 -YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKG  117 (224)
T ss_dssp             -CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTT
T ss_pred             -ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccC
Confidence             7899999999999999888889999999999999875

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.84  E-value=1.1e-08  Score=103.13  Aligned_cols=85  Identities=19%  Similarity=0.209  Sum_probs=58.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh-------hhHh--
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS-------ITQS--   75 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s-------l~~~--   75 (730)
                      ..++|+++|.+|||||||+|.+++... .....+..+.+........++  ..+.++||||..+...       ....  
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~~  108 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFL  108 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHHHH
Confidence            458999999999999999999998654 333333333345555666777  6789999999532211       1111  


Q ss_pred             hhccccEEEEEeecCCC
Q psy17467         76 YYRSAHALILVYDISCQ   92 (730)
Q Consensus        76 ~~r~ADaIILVyDvtd~   92 (730)
                      .....|++++|++++..
T Consensus       109 ~~~~~~~il~v~~~~~~  125 (257)
T d1h65a_         109 LDKTIDVLLYVDRLDAY  125 (257)
T ss_dssp             TTCEECEEEEEEESSCC
T ss_pred             hcCCCCeEEEEEECCCC
Confidence            13457899999998764

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.77  E-value=2.4e-09  Score=107.54  Aligned_cols=84  Identities=18%  Similarity=0.226  Sum_probs=62.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHc--CCCC------------------C-----------CCCCcceeeEEEEEEEeCCe
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQ--GVFP------------------P-----------GQGATIGVDFMIKTVEINNE   54 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~--~~f~------------------~-----------~~~pTig~d~~~~~i~vdg~   54 (730)
                      ..++|+++|..++|||||+.+++.  +...                  .           .....++.+.....+.+++ 
T Consensus         5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~-   83 (239)
T d1f60a3           5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK-   83 (239)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS-
T ss_pred             CccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC-
Confidence            348999999999999999999862  1100                  0           0012233333344555565 


Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCC
Q psy17467         55 RIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISC   91 (730)
Q Consensus        55 ~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd   91 (730)
                       ..+.|+||||+.+|..-...-...+|++|||+|+++
T Consensus        84 -~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~  119 (239)
T d1f60a3          84 -YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGV  119 (239)
T ss_dssp             -EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSH
T ss_pred             -EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCC
Confidence             789999999999998887788899999999999875

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=2.6e-08  Score=104.94  Aligned_cols=97  Identities=15%  Similarity=0.211  Sum_probs=67.1

Q ss_pred             e-EEEEEcCCCCCHHHHHHHHHc--CCCC----------C----CCCCcceeeEEEEEEEe--------------CCeEE
Q psy17467          8 F-KVVLVGNAGVGKTCLVRRFTQ--GVFP----------P----GQGATIGVDFMIKTVEI--------------NNERI   56 (730)
Q Consensus         8 i-KIvVLG~pnVGKSSLLnrLl~--~~f~----------~----~~~pTig~d~~~~~i~v--------------dg~~v   56 (730)
                      + +|+|+|..++|||||+.+|+.  +...          .    .....++.......+.+              +++.+
T Consensus        17 IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~   96 (341)
T d1n0ua2          17 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF   96 (341)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccce
Confidence            5 599999999999999999972  1100          0    00011111111222222              34568


Q ss_pred             EEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHH
Q psy17467         57 KLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLRE  104 (730)
Q Consensus        57 ~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wlee  104 (730)
                      .++|+||||+.+|..-....++-+|++|+|+|+.+....+...-|...
T Consensus        97 ~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a  144 (341)
T d1n0ua2          97 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQA  144 (341)
T ss_dssp             EEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHH
T ss_pred             EEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHH
Confidence            899999999999998888889999999999999998777765555443

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.54  E-value=4.6e-08  Score=100.57  Aligned_cols=84  Identities=20%  Similarity=0.157  Sum_probs=46.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEe----------------------CCeEEEEEEEeCCC
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEI----------------------NNERIKLQIWDTAG   65 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~v----------------------dg~~v~LqLwDTpG   65 (730)
                      +||++||.||||||||+|.+++.+.....+|.++.++.......                      ......++++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            47999999999999999999998877777776665544333210                      01236799999999


Q ss_pred             chhhhh----hhH---hhhccccEEEEEeecCC
Q psy17467         66 QERFRS----ITQ---SYYRSAHALILVYDISC   91 (730)
Q Consensus        66 ~e~~~s----l~~---~~~r~ADaIILVyDvtd   91 (730)
                      .-...+    +..   ..++.+|+++.|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            643222    222   23678999999999875

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.52  E-value=6.2e-08  Score=93.87  Aligned_cols=26  Identities=23%  Similarity=0.115  Sum_probs=22.9

Q ss_pred             CCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467        224 DMYYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       224 g~~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                      .++++++||++|+|+++++..|.+..
T Consensus       216 ~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         216 PVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             CCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            46899999999999999999887754

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.46  E-value=7.3e-08  Score=97.81  Aligned_cols=83  Identities=20%  Similarity=0.194  Sum_probs=59.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe---------------EEEEEEEeCCCchhhhh-
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE---------------RIKLQIWDTAGQERFRS-   71 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~---------------~v~LqLwDTpG~e~~~s-   71 (730)
                      +||-+||.||||||||+|++++.......+|..+.++....+.+.+.               ...++++|+||.-.-.+ 
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~~   82 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCccc
Confidence            79999999999999999999998877666677776766666666432               23589999999643332 


Q ss_pred             ---hhH---hhhccccEEEEEeecC
Q psy17467         72 ---ITQ---SYYRSAHALILVYDIS   90 (730)
Q Consensus        72 ---l~~---~~~r~ADaIILVyDvt   90 (730)
                         +..   ..++.||++|.|.|+.
T Consensus        83 g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          83 GEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             CCCccHHHHHHHHhccceEEEeecc
Confidence               333   3478999999999874

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.35  E-value=1.8e-07  Score=95.69  Aligned_cols=85  Identities=25%  Similarity=0.266  Sum_probs=64.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCe---------------EEEEEEEeCCCchhh-
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNE---------------RIKLQIWDTAGQERF-   69 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~---------------~v~LqLwDTpG~e~~-   69 (730)
                      .+||.+||.||||||||+|.+++... ....+|.++.++....+.+.+.               ...+++.|+||...- 
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~gA   89 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA   89 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccccc
Confidence            48999999999999999999998754 4566688777776667766532               257899999985432 


Q ss_pred             ---hhh---hHhhhccccEEEEEeecCC
Q psy17467         70 ---RSI---TQSYYRSAHALILVYDISC   91 (730)
Q Consensus        70 ---~sl---~~~~~r~ADaIILVyDvtd   91 (730)
                         ..+   .-.-++.||++|.|+|+.+
T Consensus        90 ~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          90 STGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccHHHHHHHhhccceeEEEEeccC
Confidence               222   2344789999999999876

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=1.1e-06  Score=91.64  Aligned_cols=26  Identities=15%  Similarity=0.137  Sum_probs=22.6

Q ss_pred             CCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467        224 DMYYLETSAKASDNVEKLFMQIAAEL  249 (730)
Q Consensus       224 g~~fvEtSAktG~GVeeLFe~Li~~l  249 (730)
                      ..+++.|||++|+||+++++.|.+..
T Consensus       232 ~p~V~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         232 QPRVLTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             CCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             cceeEEEEeeCCCCHHHHHHHHHHHH
Confidence            45799999999999999999997644

>d1mkya3 d.52.5.1 (A:359-439) Probable GTPase Der, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Probable GTPase Der, C-terminal domain
family: Probable GTPase Der, C-terminal domain
domain: Probable GTPase Der, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.30  E-value=2.6e-08  Score=84.28  Aligned_cols=57  Identities=11%  Similarity=0.009  Sum_probs=54.0

Q ss_pred             chhhHHHHHHhhcCCCCceeeeccccccchhhHHHhHhhhhhh-hccCCceeEEEeec
Q psy17467        291 KSLESCIKQIVKKFPNIDIKSVSGISQIRSDIVKSLSLYYYTF-VDLLHFKDCVYLSG  347 (730)
Q Consensus       291 ~~~~~~~~~~~k~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~  347 (730)
                      ++.+..|++|.+..||.|+.+|++.+.++.+|.|||+|.+|+. +++.|+|+++.+++
T Consensus        22 k~~Ki~Y~tQ~~~~PPtf~if~N~~~~~~~sY~ryL~n~lR~~~f~~~G~Pi~l~fr~   79 (81)
T d1mkya3          22 RGLKIFFGVQVDIKPPTFLFFVNSIEKVKNPQKIFLRKLIRDYVFPFEGSPIFLKFKR   79 (81)
T ss_dssp             TTCCEEEEEEEETTTTEEEEEESCSTTCCHHHHHHHHHHHHHHTCCCTTCCCEEEEEE
T ss_pred             CceeEEEEEEcCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHHhCCCCccCEEEEEEe
Confidence            5678889999999999999999999999999999999999995 89999999999987

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.09  E-value=5.9e-06  Score=85.90  Aligned_cols=57  Identities=16%  Similarity=0.172  Sum_probs=36.8

Q ss_pred             CCccccccccccccCCCCChHHH-HHHHH----------hcCCeEEEEecCCCCChHHHHHHHHHHHH
Q psy17467        194 NNIHCMARNKIDREDREIPTEVG-EDFAK----------RHDMYYLETSAKASDNVEKLFMQIAAELM  250 (730)
Q Consensus       194 ~~~~ivVgNK~DL~~R~Vs~ee~-~~lak----------~lg~~fvEtSAktG~GVeeLFe~Li~~l~  250 (730)
                      ...-++|.||+|+.+..-..... ..+..          .+..+++.|||++|+|++++++.|.+...
T Consensus       189 E~aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~  256 (323)
T d2qm8a1         189 ELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  256 (323)
T ss_dssp             HHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             hhhheeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            34567899999975321111111 11111          13457999999999999999999976553

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.04  E-value=1.5e-05  Score=80.18  Aligned_cols=32  Identities=28%  Similarity=0.633  Sum_probs=26.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATI   40 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTi   40 (730)
                      +|+|+|.-++|||||+|.+++..+ +....|++
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T   60 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT   60 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSC
T ss_pred             eEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccc
Confidence            799999999999999999999886 44443433

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.00  E-value=1.4e-05  Score=81.03  Aligned_cols=26  Identities=27%  Similarity=0.565  Sum_probs=23.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPP   34 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~   34 (730)
                      +|+|+|..++|||||+|.+++..+.+
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~~lP   51 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRDFLP   51 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSCCCC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCCCCC
Confidence            79999999999999999999988743

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.82  E-value=6.4e-06  Score=83.06  Aligned_cols=58  Identities=21%  Similarity=0.380  Sum_probs=37.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCc
Q psy17467          5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ   66 (730)
Q Consensus         5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~   66 (730)
                      ...++|+|+|.||||||||+|++.+.+...+. +..|.+.....+..+.   .+.++||||.
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~-~~pG~Tr~~~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCC
T ss_pred             CCceEEEEEecCccchhhhhhhhhccceEEEC-CcccccccceEEECCC---CeEEecCCCc
Confidence            35689999999999999999999987654332 4444444444444433   3899999996

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.61  E-value=0.00037  Score=68.70  Aligned_cols=59  Identities=19%  Similarity=0.233  Sum_probs=34.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCC-CC---cce--eeEEEEEEEeCCeEEEEEEEeCCCchhhh
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQ-GA---TIG--VDFMIKTVEINNERIKLQIWDTAGQERFR   70 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~-~p---Tig--~d~~~~~i~vdg~~v~LqLwDTpG~e~~~   70 (730)
                      ..+++|.+|||||||+|++.+.....+. .+   .-|  ++.....+.+++.   -.++||||...+.
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~~  161 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANLE  161 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTCC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCcccccc
Confidence            4689999999999999999865322111 00   000  1112223444332   3689999986543

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=96.33  E-value=0.0092  Score=59.21  Aligned_cols=34  Identities=12%  Similarity=0.178  Sum_probs=26.8

Q ss_pred             HhcCCeEEEEecCCCCChHHHHHHHHHHHHHHHH
Q psy17467        221 KRHDMYYLETSAKASDNVEKLFMQIAAELMEKLA  254 (730)
Q Consensus       221 k~lg~~fvEtSAktG~GVeeLFe~Li~~l~e~~~  254 (730)
                      +..+...+.+||+++.|+.++...+.+.+.+...
T Consensus        68 ~~~~~~~i~isa~~~~~~~~~~~~~~~~l~~~~~  101 (273)
T d1puja_          68 ENQGIRSLSINSVNGQGLNQIVPASKEILQEKFD  101 (273)
T ss_dssp             HTTTCCEEECCTTTCTTGGGHHHHHHHHHHHHHH
T ss_pred             HhcCCccceeecccCCCccccchhhhhhhhhhhh
Confidence            4456789999999999999998888777655433

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.11  E-value=0.0099  Score=58.14  Aligned_cols=22  Identities=27%  Similarity=0.175  Sum_probs=18.9

Q ss_pred             CCeEEEEecCCCCChHHHHHHH
Q psy17467        224 DMYYLETSAKASDNVEKLFMQI  245 (730)
Q Consensus       224 g~~fvEtSAktG~GVeeLFe~L  245 (730)
                      +.+++.+||+++.|++++.+.+
T Consensus        72 ~~~v~~vSa~~~~g~~~L~~~l   93 (225)
T d1u0la2          72 LYPIVKTSAKTGMGIEELKEYL   93 (225)
T ss_dssp             TSCEEECCTTTCTTHHHHHHHH
T ss_pred             ceeEEEeccccchhHhhHHHHh
Confidence            4678999999999999987765

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.11  E-value=0.00059  Score=67.45  Aligned_cols=22  Identities=32%  Similarity=0.643  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      ..+++|.+|||||||+|++++.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-
T ss_pred             eEEEECCCCccHHHHHHhhccH
Confidence            4689999999999999999875

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.84  E-value=0.0019  Score=58.45  Aligned_cols=23  Identities=39%  Similarity=0.839  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      +||+|+|++|+|||||++.+++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            48999999999999999999863

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.37  E-value=0.0048  Score=60.69  Aligned_cols=88  Identities=16%  Similarity=0.142  Sum_probs=57.6

Q ss_pred             hhccccEEEEEeecCCC-CchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCC
Q psy17467         76 YYRSAHALILVYDISCQ-PTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTD  154 (730)
Q Consensus        76 ~~r~ADaIILVyDvtd~-eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~D  154 (730)
                      ...+.|.+++|+++.+| -++..+.+++-...                                  ..+++.+||.||+|
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~----------------------------------~~~i~pvIvlnK~D   52 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----------------------------------ANDIQPIICITKMD   52 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHHH----------------------------------TTTCEEEEEEECGG
T ss_pred             CccccCEEEEEEECCCCCCCHHHHHHHHHHHH----------------------------------HcCCCEEEEEeccc
Confidence            34689999999999876 34455555544432                                  25677888889999


Q ss_pred             cchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCC
Q psy17467        155 LDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKA  234 (730)
Q Consensus       155 L~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAkt  234 (730)
                      |.+++....                                                ..+...+.....|.+++.+||++
T Consensus        53 L~~~~~~~~------------------------------------------------~~~~~~~~y~~~g~~v~~~Sa~~   84 (231)
T d1t9ha2          53 LIEDQDTED------------------------------------------------TIQAYAEDYRNIGYDVYLTSSKD   84 (231)
T ss_dssp             GCCCHHHHH------------------------------------------------HHHHHHHHHHHHTCCEEECCHHH
T ss_pred             ccccHHHHH------------------------------------------------HHHHHHHHHhhccccceeeecCC
Confidence            865332100                                                00112223345688999999999


Q ss_pred             CCChHHHHHHH
Q psy17467        235 SDNVEKLFMQI  245 (730)
Q Consensus       235 G~GVeeLFe~L  245 (730)
                      +.|++++.+.+
T Consensus        85 ~~gl~~L~~~l   95 (231)
T d1t9ha2          85 QDSLADIIPHF   95 (231)
T ss_dssp             HTTCTTTGGGG
T ss_pred             hhHHHHHHHhh
Confidence            99998887655

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.35  E-value=0.003  Score=56.34  Aligned_cols=22  Identities=27%  Similarity=0.537  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      =+|+|.|++|||||||+++|..
T Consensus         8 K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999975

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.75  E-value=0.0091  Score=55.16  Aligned_cols=28  Identities=29%  Similarity=0.359  Sum_probs=23.6

Q ss_pred             CCCCcceeEEEEEcCCCCCHHHHHHHHHc
Q psy17467          1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      |+..++. -|+|+|+|||||||+..++..
T Consensus         1 ~~~~kp~-iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           1 MEKSKPN-VVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCCCE-EEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCCCc-EEEEECCCCCCHHHHHHHHHH
Confidence            6666663 589999999999999999974

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=94.57  E-value=0.0068  Score=53.89  Aligned_cols=22  Identities=36%  Similarity=0.632  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      -+|+|+|+|||||||+.+++..
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999864

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=94.55  E-value=0.0084  Score=53.22  Aligned_cols=20  Identities=25%  Similarity=0.547  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~   29 (730)
                      ++|+|.+|||||||++++..
T Consensus         5 i~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           5 LAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            78999999999999999974

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=94.01  E-value=0.013  Score=52.34  Aligned_cols=23  Identities=22%  Similarity=0.501  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHc
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      ..+|+|.|+|||||||+.+.|..
T Consensus         5 ~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           5 GINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHH
Confidence            37899999999999999999874

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.90  E-value=0.014  Score=51.20  Aligned_cols=20  Identities=30%  Similarity=0.649  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~   29 (730)
                      |+|.|.||||||||++++..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999999864

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.82  E-value=0.015  Score=52.68  Aligned_cols=22  Identities=27%  Similarity=0.522  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      +||+|+|+|||||||+...+..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988864

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.77  E-value=0.014  Score=53.61  Aligned_cols=20  Identities=35%  Similarity=0.669  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~   29 (730)
                      |+++|.||||||||.+++..
T Consensus         5 i~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           5 IVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999874

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=93.63  E-value=0.016  Score=50.99  Aligned_cols=20  Identities=35%  Similarity=0.703  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~   29 (730)
                      |+|.|+|||||||+.++|..
T Consensus         5 I~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999974

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.33  E-value=0.02  Score=52.16  Aligned_cols=22  Identities=27%  Similarity=0.602  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      +||+|+|+|||||||+..+|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999864

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=93.30  E-value=0.017  Score=50.00  Aligned_cols=21  Identities=38%  Similarity=0.713  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .|+++|++||||||+.+.+..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999874

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=93.25  E-value=0.021  Score=52.46  Aligned_cols=23  Identities=26%  Similarity=0.479  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHc
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .+||+++|+|||||||+...|..
T Consensus         3 ~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHH
Confidence            37999999999999999999874

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=93.17  E-value=0.022  Score=52.08  Aligned_cols=22  Identities=32%  Similarity=0.590  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .||+|+|+|||||||+..+|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998875

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.08  E-value=0.023  Score=50.32  Aligned_cols=20  Identities=45%  Similarity=0.777  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~   29 (730)
                      |+|.|++|+|||||+..+..
T Consensus         4 v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           4 VFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             EEEESCCSSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            89999999999999998874

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=93.06  E-value=0.023  Score=52.95  Aligned_cols=24  Identities=29%  Similarity=0.567  Sum_probs=21.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHc
Q psy17467          6 FLFKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         6 ~~iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      ..+||+|+|+|||||||+..++..
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHH
Confidence            458999999999999999999975

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.01  E-value=0.024  Score=51.88  Aligned_cols=23  Identities=26%  Similarity=0.525  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHc
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .+||+|+|+|||||||+...+..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999874

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.96  E-value=0.025  Score=51.51  Aligned_cols=22  Identities=18%  Similarity=0.407  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      +||+|+|+|||||||+..++..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988864

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.79  E-value=0.048  Score=54.44  Aligned_cols=59  Identities=24%  Similarity=0.230  Sum_probs=38.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC--CCC---CCCcceeeEEEEEEEeCCeEEEEEEEeCCCch
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQGVF--PPG---QGATIGVDFMIKTVEINNERIKLQIWDTAGQE   67 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~~f--~~~---~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e   67 (730)
                      .=|.|+|+.++|||+|+|++.+..+  ...   ...|.|+-.....+ .++....+-++||.|..
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLG   96 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEeccccc
Confidence            3478999999999999999997653  222   22455532222222 13445678889999864

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=92.64  E-value=0.027  Score=50.10  Aligned_cols=20  Identities=35%  Similarity=0.438  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~   29 (730)
                      |+|.|.+||||||+++++..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999998853

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.62  E-value=0.015  Score=53.98  Aligned_cols=20  Identities=30%  Similarity=0.615  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~   29 (730)
                      |+|+|++||||+||+++|+.
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999985

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.50  E-value=0.028  Score=50.57  Aligned_cols=20  Identities=30%  Similarity=0.458  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~   29 (730)
                      +.|+|.+|||||||++++..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            35999999999999999874

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=92.17  E-value=0.028  Score=51.68  Aligned_cols=22  Identities=23%  Similarity=0.365  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .+|+|.|+|||||||+...|..
T Consensus         4 m~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999988864

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.01  E-value=0.034  Score=51.40  Aligned_cols=21  Identities=29%  Similarity=0.675  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~   30 (730)
                      |+|+|++|||||||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999999754

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.82  E-value=0.037  Score=50.98  Aligned_cols=21  Identities=33%  Similarity=0.520  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      =|+++|.|||||||+..++..
T Consensus        16 liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          16 VVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHTG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999999864

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.77  E-value=0.032  Score=50.31  Aligned_cols=20  Identities=50%  Similarity=0.765  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q psy17467          9 KVVLVGNAGVGKTCLVRRFT   28 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl   28 (730)
                      ||+++|.+||||||+.+.+.
T Consensus         3 ~IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            58999999999999988875

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.53  E-value=0.044  Score=50.15  Aligned_cols=21  Identities=43%  Similarity=0.659  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~   30 (730)
                      |+|+|++|||||||++.+...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999999754

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=91.32  E-value=0.047  Score=48.38  Aligned_cols=20  Identities=30%  Similarity=0.581  Sum_probs=17.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~   29 (730)
                      +++.|.+||||||+.+.+..
T Consensus         9 ivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67799999999999999874

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=91.28  E-value=0.054  Score=47.96  Aligned_cols=20  Identities=25%  Similarity=0.619  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~   29 (730)
                      |++.|++||||||+.+.+..
T Consensus         7 I~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999988865

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.21  E-value=0.054  Score=49.57  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      ..|+|+|+|||||||+..++..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998874

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.88  E-value=0.09  Score=51.19  Aligned_cols=33  Identities=30%  Similarity=0.394  Sum_probs=25.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINN   53 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg   53 (730)
                      ++++|++|||||||++.+.+-.     .|+.|      .+.++|
T Consensus        34 ~~iiG~sGsGKSTLl~~i~gl~-----~p~sG------~I~~~g   66 (230)
T d1l2ta_          34 VSIMGPSGSGKSTMLNIIGCLD-----KPTEG------EVYIDN   66 (230)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS-----CCSEE------EEEETT
T ss_pred             EEEECCCCCCcchhhHhccCCC-----CCCcc------eeEECC
Confidence            7999999999999999776532     24444      566777

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=90.86  E-value=0.054  Score=47.70  Aligned_cols=21  Identities=29%  Similarity=0.596  Sum_probs=18.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFT   28 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl   28 (730)
                      +-|.++|.|||||||+.+.|.
T Consensus         7 ~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           7 FTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            457899999999999988775

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=90.84  E-value=0.1  Score=51.12  Aligned_cols=34  Identities=29%  Similarity=0.433  Sum_probs=26.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE   54 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~   54 (730)
                      ++++|++|+|||||++.+.+-.     .|+.|      .+.++|+
T Consensus        35 ~~liGpsGaGKSTLl~~i~Gl~-----~p~sG------~I~i~g~   68 (239)
T d1v43a3          35 LVLLGPSGCGKTTTLRMIAGLE-----EPTEG------RIYFGDR   68 (239)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS-----CCSEE------EEEETTE
T ss_pred             EEEECCCCChHHHHHHHHHcCC-----CCCCC------EEEEcce
Confidence            7999999999999999998753     24444      6667774

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=90.74  E-value=0.057  Score=48.13  Aligned_cols=21  Identities=29%  Similarity=0.694  Sum_probs=17.4

Q ss_pred             EE-EEEcCCCCCHHHHHHHHHc
Q psy17467          9 KV-VLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KI-vVLG~pnVGKSSLLnrLl~   29 (730)
                      || +|.|.+||||||+++.+..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            45 5679999999999998853

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.66  E-value=0.06  Score=50.00  Aligned_cols=20  Identities=45%  Similarity=0.796  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~   29 (730)
                      |+|+|++|||||||+++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999864

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=90.59  E-value=0.14  Score=50.10  Aligned_cols=35  Identities=26%  Similarity=0.427  Sum_probs=27.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeE
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNER   55 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~   55 (730)
                      ++++|++|+|||||++.+.+-.     .|+.|      .+.++|..
T Consensus        32 ~~liG~sGaGKSTll~~i~gl~-----~p~sG------~I~~~g~~   66 (240)
T d1g2912          32 MILLGPSGCGKTTTLRMIAGLE-----EPSRG------QIYIGDKL   66 (240)
T ss_dssp             EEEECSTTSSHHHHHHHHHTSS-----CCSEE------EEEETTEE
T ss_pred             EEEECCCCChHHHHHHHHhcCC-----CCCCC------EEEECCEE
Confidence            7999999999999999998643     24444      66778743

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=90.55  E-value=0.065  Score=47.19  Aligned_cols=20  Identities=30%  Similarity=0.614  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~   29 (730)
                      |+|.|.+||||||+.+.|..
T Consensus         6 I~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            55669999999999999875

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.53  E-value=0.057  Score=51.22  Aligned_cols=34  Identities=26%  Similarity=0.403  Sum_probs=26.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE   54 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~   54 (730)
                      ++++|++|+|||||++.+++-.     .|+.|      .+.++|.
T Consensus        30 ~~l~G~NGsGKSTLl~~i~gl~-----~p~~G------~I~~~g~   63 (200)
T d1sgwa_          30 VNFHGPNGIGKTTLLKTISTYL-----KPLKG------EIIYNGV   63 (200)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS-----CCSEE------EEEETTE
T ss_pred             EEEECCCCChHHHHHHHHhccc-----ccCCC------EEEECCE
Confidence            7899999999999999998643     24444      5566774

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=90.50  E-value=0.056  Score=48.72  Aligned_cols=21  Identities=33%  Similarity=0.697  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      +|+++|.|||||||+.+.+..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999988853

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=90.45  E-value=0.12  Score=50.54  Aligned_cols=34  Identities=26%  Similarity=0.422  Sum_probs=26.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE   54 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~   54 (730)
                      ++++|++|+|||||++.+.+-.     .|+.|      .+.++|.
T Consensus        34 ~~iiG~sGsGKSTLl~~i~Gl~-----~p~sG------~I~~~g~   67 (240)
T d3dhwc1          34 YGVIGASGAGKSTLIRCVNLLE-----RPTEG------SVLVDGQ   67 (240)
T ss_dssp             EEEEESTTSSHHHHHHHHTTSS-----CCSEE------EEEETTE
T ss_pred             EEEECCCCCCHHHHHHHHcCCc-----cccCC------ceEEcCe
Confidence            7999999999999999997643     24444      6777884

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.37  E-value=0.061  Score=49.45  Aligned_cols=20  Identities=20%  Similarity=0.567  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~   29 (730)
                      |+|+|+|||||||+..++..
T Consensus        11 I~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_          11 IFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999975

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=90.30  E-value=0.067  Score=50.74  Aligned_cols=21  Identities=19%  Similarity=0.488  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~   30 (730)
                      |+|+|++|||||||+++++..
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999999854

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=90.19  E-value=0.059  Score=51.28  Aligned_cols=22  Identities=32%  Similarity=0.436  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      -|++.|+||+|||||...+.+.
T Consensus        34 ~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999998764

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=89.96  E-value=0.07  Score=52.24  Aligned_cols=35  Identities=26%  Similarity=0.349  Sum_probs=27.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE   54 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~   54 (730)
                      +|+|+|++|+|||||++.+.+-.     .|+.|      .+.++|.
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~-----~p~~G------~I~i~g~   65 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFY-----IPENG------QVLIDGH   65 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS-----CCSEE------EEEETTE
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC-----CCCCC------EEEECCE
Confidence            58999999999999999998643     24444      6677773

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=89.56  E-value=0.079  Score=51.79  Aligned_cols=34  Identities=21%  Similarity=0.382  Sum_probs=26.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINN   53 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg   53 (730)
                      .++|+|++|+|||||++-+.+-.     .|+.|      .+.++|
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl~-----~p~~G------~I~i~g   63 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERFY-----QPTAG------EITIDG   63 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS-----CCSBS------CEEETT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh-----CCCCC------EEEECC
Confidence            58999999999999999987643     34555      556666

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.49  E-value=0.086  Score=52.66  Aligned_cols=22  Identities=27%  Similarity=0.443  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .++|+|++|+|||||++.+++-
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4899999999999999999864

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.44  E-value=0.085  Score=51.45  Aligned_cols=34  Identities=35%  Similarity=0.484  Sum_probs=25.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE   54 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~   54 (730)
                      ++++|++|||||||++.+.+-.     .|+.|      .+.++|+
T Consensus        29 ~~liGpsGsGKSTLl~~i~Gl~-----~p~sG------~I~i~g~   62 (232)
T d2awna2          29 VVFVGPSGCGKSTLLRMIAGLE-----TITSG------DLFIGEK   62 (232)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS-----CCSEE------EEEESSS
T ss_pred             EEEECCCCChHHHHHHHHhcCC-----CCCCC------EEEECCE
Confidence            7999999999999999887643     24444      5666764

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=89.41  E-value=0.083  Score=49.67  Aligned_cols=21  Identities=14%  Similarity=0.284  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      -|+|.|++|+|||||+.++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            377899999999999999874

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=89.41  E-value=0.09  Score=50.03  Aligned_cols=22  Identities=45%  Similarity=0.726  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      =++++||+||||||+++..+..
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHH
Confidence            3799999999999999977653

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.39  E-value=0.082  Score=52.01  Aligned_cols=35  Identities=26%  Similarity=0.414  Sum_probs=26.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE   54 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~   54 (730)
                      +++|+|++|+|||||++-+++-.     .|+.|      .+.++|.
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl~-----~p~~G------~I~i~g~   77 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRFY-----DIDEG------HILMDGH   77 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT-----CCSEE------EEEETTE
T ss_pred             EEEEECCCCChHHHHHHHHhccc-----CCCcc------EEEECCc
Confidence            58999999999999999987532     24444      6677773

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.30  E-value=0.084  Score=51.89  Aligned_cols=35  Identities=23%  Similarity=0.320  Sum_probs=26.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE   54 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~   54 (730)
                      .++|+|++|+|||||++-+.+-.     .|+.|      .+.++|.
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~-----~p~~G------~I~i~g~   76 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLY-----QPTGG------QLLLDGK   76 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS-----CCSEE------EEEETTE
T ss_pred             EEEEECCCCCcHHHHHHHHhccc-----CCCcC------EEEECCE
Confidence            58999999999999999987643     24444      6667773

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.24  E-value=0.14  Score=50.13  Aligned_cols=35  Identities=29%  Similarity=0.442  Sum_probs=27.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeE
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNER   55 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~   55 (730)
                      ++++|++|+|||||++.+.+-.     .|+.|      .+.++|+.
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~-----~p~~G------~I~~~g~~   67 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFL-----KADEG------RVYFENKD   67 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS-----CCSEE------EEEETTEE
T ss_pred             EEEECCCCCcHHHHHHHHHCCC-----cCCCc------EEEECCEe
Confidence            7999999999999999998753     24444      67777754

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.24  E-value=0.091  Score=48.33  Aligned_cols=20  Identities=30%  Similarity=0.579  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~   29 (730)
                      |+|+|+|||||||+..++..
T Consensus        11 I~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_          11 IFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999975

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.23  E-value=0.09  Score=51.57  Aligned_cols=34  Identities=29%  Similarity=0.482  Sum_probs=26.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE   54 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~   54 (730)
                      ++++|++|+|||||++.+.+-.     .|+.|      .+.++|.
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~-----~p~~G------~I~~~G~   60 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIV-----KPDRG------EVRLNGA   60 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS-----CCSEE------EEEETTE
T ss_pred             EEEECCCCChHHHHHHHHHcCC-----CCCce------EEEECCE
Confidence            6799999999999999998743     24444      6777884

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=89.07  E-value=0.092  Score=47.31  Aligned_cols=19  Identities=32%  Similarity=0.616  Sum_probs=17.6

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q psy17467         10 VVLVGNAGVGKTCLVRRFT   28 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl   28 (730)
                      |+++|.+||||||+.+.+.
T Consensus         5 Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7899999999999999885

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.96  E-value=0.099  Score=46.98  Aligned_cols=22  Identities=27%  Similarity=0.385  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      +=|.|-|.+|||||||.++|..
T Consensus        23 ~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          23 LVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3488999999999999999864

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=88.70  E-value=0.1  Score=51.88  Aligned_cols=22  Identities=36%  Similarity=0.587  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      =++++||+||||||+++..+..
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHH
Confidence            3799999999999999887753

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=88.39  E-value=0.11  Score=49.21  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      -.+++.|+||+||||+++.+.+.
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999998753

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.24  E-value=0.057  Score=48.76  Aligned_cols=21  Identities=33%  Similarity=0.480  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      -|.++|.|||||||+.+.|..
T Consensus        21 vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          21 TVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             EEEEESSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            477889999999999998853

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=87.84  E-value=0.12  Score=48.57  Aligned_cols=23  Identities=30%  Similarity=0.502  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      -.++|.|+||+|||++++.+...
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999988753

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=87.83  E-value=0.16  Score=49.83  Aligned_cols=36  Identities=19%  Similarity=0.332  Sum_probs=27.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeE
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNER   55 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~   55 (730)
                      .++++|++|+|||||++.+.+-.     .|+.|      .+.++|..
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~-----~p~~G------~I~~~g~~   68 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD-----VPSTG------ELYFDDRL   68 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS-----CCSEE------EEEETTEE
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc-----CCCCc------eEEECCEE
Confidence            37999999999999999998743     24444      67778853

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=87.75  E-value=0.092  Score=50.84  Aligned_cols=20  Identities=40%  Similarity=0.687  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~   29 (730)
                      ++++|++|+|||||++.+.+
T Consensus        28 ~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          28 LHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EECBCCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHhC
Confidence            78999999999999999986

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=87.55  E-value=0.12  Score=50.41  Aligned_cols=34  Identities=32%  Similarity=0.468  Sum_probs=26.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE   54 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~   54 (730)
                      ++++|++|+|||||++.+.+-.     .|+.|      .+.++|.
T Consensus        35 ~~liGpnGaGKSTl~~~i~Gl~-----~p~~G------~I~~~G~   68 (240)
T d1ji0a_          35 VTLIGANGAGKTTTLSAIAGLV-----RAQKG------KIIFNGQ   68 (240)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS-----CCSEE------EEEETTE
T ss_pred             EEEECCCCCcHHHHHHHHhCCC-----CCCcc------EEEeccc
Confidence            7899999999999999998743     24444      6667774

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=87.40  E-value=0.13  Score=48.49  Aligned_cols=21  Identities=38%  Similarity=0.638  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .+++.|+||+||||+++.+..
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHh
Confidence            489999999999999999875

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=87.36  E-value=0.13  Score=50.20  Aligned_cols=34  Identities=26%  Similarity=0.409  Sum_probs=26.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE   54 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~   54 (730)
                      +.++|++|+|||||++.+.+-.     .|+.|      .+.++|.
T Consensus        31 ~glvG~nGaGKSTLl~~l~G~~-----~p~~G------~i~i~G~   64 (238)
T d1vpla_          31 FGLIGPNGAGKTTTLRIISTLI-----KPSSG------IVTVFGK   64 (238)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS-----CCSEE------EEEETTE
T ss_pred             EEEECCCCCCHHHHHHHHhcCC-----CCCCC------EEEECcE
Confidence            6899999999999999998753     24443      6666773

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=87.23  E-value=0.14  Score=47.36  Aligned_cols=22  Identities=18%  Similarity=0.443  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      ++|+|-|+|||||||+...+..
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6789999999999999998874

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=86.96  E-value=0.1  Score=50.82  Aligned_cols=35  Identities=17%  Similarity=0.266  Sum_probs=27.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeE
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNER   55 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~   55 (730)
                      ++++|++|+|||||++.+.+-.     .|+.      ..+.++|..
T Consensus        29 ~~liGpsGaGKSTll~~l~Gl~-----~p~s------G~I~~~G~~   63 (229)
T d3d31a2          29 FVILGPTGAGKTLFLELIAGFH-----VPDS------GRILLDGKD   63 (229)
T ss_dssp             EEEECCCTHHHHHHHHHHHTSS-----CCSE------EEEEETTEE
T ss_pred             EEEECCCCCcHHHHHHHHhcCc-----CCCC------CEEEEccEe
Confidence            7999999999999999998753     2444      466778743

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=86.58  E-value=0.097  Score=51.64  Aligned_cols=35  Identities=29%  Similarity=0.423  Sum_probs=26.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE   54 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~   54 (730)
                      +++|+|++|+|||||++-+.+-     +.|+.|      .+.++|.
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl-----~~p~~G------~I~i~g~   80 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRF-----YDVTSG------QILIDGH   80 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS-----SCCSEE------EEEETTE
T ss_pred             EEEEECCCCCcHHHHHHHHHhc-----CCcccc------ccccCCE
Confidence            5899999999999999877653     224444      6667773

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.70  E-value=0.18  Score=47.64  Aligned_cols=22  Identities=32%  Similarity=0.480  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .+++.|+||+||||++..+.+.
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999864

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=85.42  E-value=0.43  Score=43.67  Aligned_cols=22  Identities=50%  Similarity=0.699  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      =|++-|+=|+|||||++.+..+
T Consensus        35 ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          35 MVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCCccHHHHHHHHHhh
Confidence            3788999999999999998853

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=85.25  E-value=0.17  Score=47.82  Aligned_cols=21  Identities=29%  Similarity=0.430  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~   30 (730)
                      +.+.|+||+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            345699999999999998753

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=85.25  E-value=0.2  Score=45.89  Aligned_cols=20  Identities=25%  Similarity=0.579  Sum_probs=17.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~   29 (730)
                      |+|.|+|||||||+...+..
T Consensus         6 I~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           6 ITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67779999999999998874

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.18  E-value=0.2  Score=46.95  Aligned_cols=21  Identities=29%  Similarity=0.545  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .+++.|++|+|||++++.+..
T Consensus        47 ~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999998875

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.06  E-value=0.19  Score=49.43  Aligned_cols=35  Identities=20%  Similarity=0.447  Sum_probs=26.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeE
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNER   55 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~   55 (730)
                      ++|+|++|+|||||++.+.+-.     .|+.|      .+.++|+.
T Consensus        31 ~~iiG~sGsGKSTLl~~i~Gl~-----~p~~G------~I~~~G~~   65 (258)
T d1b0ua_          31 ISIIGSSGSGKSTFLRCINFLE-----KPSEG------AIIVNGQN   65 (258)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS-----CCSEE------EEEETTEE
T ss_pred             EEEECCCCCcHHHHHHHHHcCc-----cCCCC------CEEECCEE
Confidence            7999999999999999997642     24444      66677754

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=84.76  E-value=0.21  Score=49.98  Aligned_cols=22  Identities=36%  Similarity=0.745  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .|+++|+||||||.|.+.+.+.
T Consensus        51 ~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          51 NILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhhc
Confidence            4899999999999999998753

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=83.78  E-value=0.24  Score=47.95  Aligned_cols=23  Identities=35%  Similarity=0.543  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHc
Q psy17467          7 LFKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         7 ~iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .-.|++.|+||+|||+|++.+.+
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhh
Confidence            35699999999999999999875

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.24  E-value=0.29  Score=44.71  Aligned_cols=21  Identities=29%  Similarity=0.555  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999988763

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.09  E-value=0.31  Score=43.19  Aligned_cols=21  Identities=19%  Similarity=0.292  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~~   30 (730)
                      +.|.|+||+|||+|..++...
T Consensus        26 ~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          26 TEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHH
Confidence            689999999999999998754

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.77  E-value=0.24  Score=46.54  Aligned_cols=22  Identities=23%  Similarity=0.407  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .+++.|++|+||||++..+...
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999988753

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=82.54  E-value=0.22  Score=51.86  Aligned_cols=25  Identities=48%  Similarity=0.870  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHH----HHHcCCCC
Q psy17467          9 KVVLVGNAGVGKTCLVR----RFTQGVFP   33 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLn----rLl~~~f~   33 (730)
                      ++++||+||||||+|+.    ++..+..+
T Consensus        45 n~llvG~~GvGKtaiv~~la~~i~~~~vp   73 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLAQRIVKGDVP   73 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHHHHHHHTCSC
T ss_pred             CCeEECCCCCCHHHHHHHHHHHHHhCCCC
Confidence            57999999999999985    44455543

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.41  E-value=0.3  Score=45.39  Aligned_cols=21  Identities=29%  Similarity=0.555  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .+++.|++|+||||++..+..
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHH
Confidence            378999999999999998875

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.15  E-value=0.38  Score=44.40  Aligned_cols=22  Identities=23%  Similarity=0.480  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      +=|+|-|.+|||||||.+++..
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999998864

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=81.61  E-value=0.33  Score=44.02  Aligned_cols=22  Identities=41%  Similarity=0.777  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~   29 (730)
                      +=|+|-|..||||||+++.+..
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999999864

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.51  E-value=0.34  Score=45.19  Aligned_cols=21  Identities=29%  Similarity=0.585  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .+++.|++|+||||+++.+..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            478999999999999988764

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.31  E-value=0.35  Score=45.01  Aligned_cols=22  Identities=23%  Similarity=0.495  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      .+++.|++|+||||++..+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            4789999999999999999753

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=80.99  E-value=0.091  Score=46.44  Aligned_cols=18  Identities=33%  Similarity=0.617  Sum_probs=16.2

Q ss_pred             EEEcCCCCCHHHHHHHHH
Q psy17467         11 VLVGNAGVGKTCLVRRFT   28 (730)
Q Consensus        11 vVLG~pnVGKSSLLnrLl   28 (730)
                      +|+|+.|+|||||+..+.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            578999999999999874

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=80.99  E-value=0.36  Score=46.77  Aligned_cols=21  Identities=52%  Similarity=0.737  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy17467          9 KVVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl~   29 (730)
                      .|++.|+||+|||+|++.+.+
T Consensus        44 giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHH
Confidence            489999999999999999985

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=80.78  E-value=0.38  Score=45.80  Aligned_cols=20  Identities=40%  Similarity=0.657  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q psy17467          9 KVVLVGNAGVGKTCLVRRFT   28 (730)
Q Consensus         9 KIvVLG~pnVGKSSLLnrLl   28 (730)
                      -|+++|++||||||.+-++.
T Consensus         8 vi~lvGptGvGKTTTiaKLA   27 (207)
T d1okkd2           8 VVLVVGVNGVGKTTTIAKLG   27 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            37899999999999988875

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=80.65  E-value=0.39  Score=45.86  Aligned_cols=41  Identities=15%  Similarity=0.169  Sum_probs=26.6

Q ss_pred             ccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHH
Q psy17467        196 IHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL  241 (730)
Q Consensus       196 ~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeL  241 (730)
                      +.-++.+|.|...+.   -.+..++...++++.++|  +|++|+++
T Consensus       156 ~~~lIlTKlDe~~~~---G~~l~~~~~~~~Pi~~i~--~Gq~v~Dl  196 (211)
T d2qy9a2         156 LTGITLTKLDGTAKG---GVIFSVADQFGIPIRYIG--VGERIEDL  196 (211)
T ss_dssp             CCEEEEECCTTCTTT---THHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred             CceEEEeecCCCCCc---cHHHHHHHHHCCCEEEEe--CCCCcccC
Confidence            334566777764332   345666777888888887  57887653

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=80.57  E-value=0.38  Score=48.60  Aligned_cols=23  Identities=26%  Similarity=0.483  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFTQG   30 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl~~   30 (730)
                      -+|+|.|..|+|||||++.++..
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            35899999999999999999863

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=80.25  E-value=0.41  Score=44.20  Aligned_cols=20  Identities=30%  Similarity=0.441  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q psy17467         10 VVLVGNAGVGKTCLVRRFTQ   29 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl~   29 (730)
                      |+|-|.+||||||+++.+..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999988764

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=80.22  E-value=0.34  Score=46.23  Aligned_cols=19  Identities=32%  Similarity=0.630  Sum_probs=13.4

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q psy17467         10 VVLVGNAGVGKTCLVRRFT   28 (730)
Q Consensus        10 IvVLG~pnVGKSSLLnrLl   28 (730)
                      |+++|++||||||.+-++.
T Consensus        15 i~lvGptGvGKTTTiAKLA   33 (211)
T d1j8yf2          15 IMLVGVQGTGKATTAGKLA   33 (211)
T ss_dssp             EEEECSCCC----HHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            8889999999999988876

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=80.19  E-value=0.41  Score=45.76  Aligned_cols=21  Identities=33%  Similarity=0.634  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q psy17467          8 FKVVLVGNAGVGKTCLVRRFT   28 (730)
Q Consensus         8 iKIvVLG~pnVGKSSLLnrLl   28 (730)
                      .-|+++|++||||||.+-++.
T Consensus        12 ~vi~lvGptGvGKTTTiAKLA   32 (213)
T d1vmaa2          12 FVIMVVGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            458999999999999988776