Psyllid ID: psy17940

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-
Protein Sequence
MLEAKSQEEASTQKAKEKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIGSGPAAAQTQAADPSGASKLNKM
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHccccccccccccHHHHHcccccccccccHHHHHHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHcccccEEccccHHHHHHHcccccccccccccHHHHHHHHHHccccccccccccccHcHHHHcccc
Coil and Loop (DISEMBL)
MLEAKSQEEASTqkakekpghkvqpddpisflelssargsefggteNVFELSLNQaligsgpaaaqtqaadpsgasklnkm
Flexible Loop (DISEMBL)
mleaksqeeastqkakekpghkvqpddPISFLELSSARGSEFGGTENVFELSLNQALIGSGpaaaqtqaadpsgasklnkm
Low Complexity Region (SEG)
MLEAKSQEEASTQKAKEKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIGSGPAAAQTQAADPSGASKLNKM
Disordered region (IsUnstruct)
***********************************************VFEL******************************
Disordered Region (DISOPRED)
***********************QPDDPISFLELSS**********NVFELSLNQ*******************ASKLN**
Disordered Region (DISEMBL)
************************PDDPISFLELSSARGSEFGGTENVFELSLNQALIG**********************
Disordered Region (DISPRO)
******************PGHKVQPDDPISFLELSSARGSEF*G*E*VF**S*****I***********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLEAKSQEEASTQKAKEKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIGSGPAAAQTQAADPSGASKLNKM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	81	2.2.26 [Sep-21-2011]
P45437	964	Coatomer subunit beta OS=	yes	N/A	0.938	0.078	0.493	3e-10
Q29G21	965	Coatomer subunit beta OS=	yes	N/A	0.925	0.077	0.463	1e-09
Q5ZIA5	953	Coatomer subunit beta OS=	yes	N/A	0.913	0.077	0.451	5e-07
Q5R922	953	Coatomer subunit beta OS=	yes	N/A	0.913	0.077	0.451	9e-07
P53618	953	Coatomer subunit beta OS=	yes	N/A	0.913	0.077	0.451	9e-07
A0JN39	953	Coatomer subunit beta OS=	yes	N/A	0.913	0.077	0.451	9e-07
D2SW95	953	Coatomer subunit beta OS=	yes	N/A	0.913	0.077	0.451	1e-06
P23514	953	Coatomer subunit beta OS=	yes	N/A	0.913	0.077	0.451	1e-06
Q9JIF7	953	Coatomer subunit beta OS=	yes	N/A	0.913	0.077	0.451	1e-06
Q66HV4	953	Coatomer subunit beta OS=	yes	N/A	0.913	0.077	0.402	8e-05

>sp|P45437|COPB_DROME Coatomer subunit beta OS=Drosophila melanogaster GN=betaCop PE=2 SV=2

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 52/81 (64%), Gaps = 5/81 (6%)

Query: 1   MLEAKSQEEASTQKAKEKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIGS 60
           ML+A+  E+    K K+K   KVQPDDP+ F +LS+ R ++ G  ENVFE SLNQAL GS
Sbjct: 654 MLDAQHDEDQRMLKEKQKATAKVQPDDPVLFAQLSNGRDNQLG--ENVFESSLNQALAGS 711

Query: 61  GPAAAQTQAADPSGASKLNKM 81
             A   +  A P+  SKLNK+
Sbjct: 712 KNAQL-SDVASPN--SKLNKV 729

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Required for limiting lipid storage in lipid droplets.
Drosophila melanogaster (taxid: 7227)

>sp|Q29G21|COPB_DROPS Coatomer subunit beta OS=Drosophila pseudoobscura pseudoobscura GN=betaCop PE=3 SV=2

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/82 (46%), Positives = 52/82 (63%), Gaps = 7/82 (8%)

Query: 1   MLEAKSQEEASTQKAKEKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIGS 60
           ML+A+  E+    K K++   KVQPDDP+ F +LS+ R ++ G  ENVFE SLNQAL G+
Sbjct: 655 MLDAQHDEDQRVLKEKQRATAKVQPDDPVLFAQLSNGRDNQLG--ENVFESSLNQALAGT 712

Query: 61  GPAAAQTQAADPSGA-SKLNKM 81
             A    Q +D S   +KLNK+
Sbjct: 713 KTA----QLSDISSPNNKLNKV 730

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Required for limiting lipid storage in lipid droplets.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q5ZIA5|COPB_CHICK Coatomer subunit beta OS=Gallus gallus GN=COPB1 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 8/82 (9%)

Query: 1   MLEAKSQEEASTQKAK-EKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIG 59
           ML AK +EE  +QK + EK    VQPDDPISF++L++   +E    E+ F+LSL  A+  
Sbjct: 642 MLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAK--NEMSSKEDQFQLSLLAAMGN 699

Query: 60  SGPAAAQTQAADPSGASKLNKM 81
           +     + +AADP  ASKLNK+
Sbjct: 700 T----QRKEAADPL-ASKLNKV 716

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Gallus gallus (taxid: 9031)

>sp|Q5R922|COPB_PONAB Coatomer subunit beta OS=Pongo abelii GN=COPB1 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 8/82 (9%)

Query: 1   MLEAKSQEEASTQKAK-EKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIG 59
           ML AK +EE  +QK + EK    VQPDDPISF++L++   +E    E+ F+LSL  A+  
Sbjct: 642 MLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAK--NEMNCKEDQFQLSLLAAMGN 699

Query: 60  SGPAAAQTQAADPSGASKLNKM 81
           +     + +AADP  ASKLNK+
Sbjct: 700 T----QRKEAADPL-ASKLNKV 716

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. Plays a functional role in facilitating the transport of kappa-type opioid receptor mRNAs into axons and enhances translation of these proteins. Required for limiting lipid storage in lipid droplets. Involved in lipid homeostasis by regulating the presence of perilipin family members PLIN2 and PLIN3 at the lipid droplet surface and promoting the association of adipocyte surface triglyceride lipase (PNPLA2) with the lipid droplet to mediate lipolysis. Involved in the Golgi disassembly and reassembly processes during cell cycle. Involved in autophagy by playing a role in early endosome function. Plays a role in organellar compartmentalization of secretory compartments including endoplasmic reticulum (ER)-Golgi intermediate compartment (ERGIC), Golgi, trans-Golgi network (TGN) and recycling endosomes, and in biosynthetic transport of CAV1. Promotes degradation of Nef cellular targets CD4 and MHC class I antigens by facilitating their trafficking to degradative compartments.

Pongo abelii (taxid: 9601)

>sp|P53618|COPB_HUMAN Coatomer subunit beta OS=Homo sapiens GN=COPB1 PE=1 SV=3

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 8/82 (9%)

Query: 1   MLEAKSQEEASTQKAK-EKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIG 59
           ML AK +EE  +QK + EK    VQPDDPISF++L++   +E    E+ F+LSL  A+  
Sbjct: 642 MLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAK--NEMNCKEDQFQLSLLAAMGN 699

Query: 60  SGPAAAQTQAADPSGASKLNKM 81
           +     + +AADP  ASKLNK+
Sbjct: 700 T----QRKEAADPL-ASKLNKV 716

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. Plays a functional role in facilitating the transport of kappa-type opioid receptor mRNAs into axons and enhances translation of these proteins. Required for limiting lipid storage in lipid droplets. Involved in lipid homeostasis by regulating the presence of perilipin family members PLIN2 and PLIN3 at the lipid droplet surface and promoting the association of adipocyte surface triglyceride lipase (PNPLA2) with the lipid droplet to mediate lipolysis (By similarity). Involved in the Golgi disassembly and reassembly processes during cell cycle. Involved in autophagy by playing a role in early endosome function. Plays a role in organellar compartmentalization of secretory compartments including endoplasmic reticulum (ER)-Golgi intermediate compartment (ERGIC), Golgi, trans-Golgi network (TGN) and recycling endosomes, and in biosynthetic transport of CAV1. Promotes degradation of Nef cellular targets CD4 and MHC class I antigens by facilitating their trafficking to degradative compartments.

Homo sapiens (taxid: 9606)

>sp|A0JN39|COPB_BOVIN Coatomer subunit beta OS=Bos taurus GN=COPB1 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 8/82 (9%)

Query: 1   MLEAKSQEEASTQKAK-EKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIG 59
           ML AK +EE  +QK + EK    VQPDDPISF++L++   +E    E+ F+LSL  A+  
Sbjct: 642 MLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAK--NEMNCKEDQFQLSLLAAMGN 699

Query: 60  SGPAAAQTQAADPSGASKLNKM 81
           +     + +AADP  ASKLNK+
Sbjct: 700 T----QRKEAADPL-ASKLNKV 716

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. Involved in the Golgi disassembly and reassembly processes during cell cycle. Plays a functional role in facilitating the transport of kappa-type opioid receptor mRNAs into axons and enhances translation of these proteins. Required for limiting lipid storage in lipid droplets. Involved in lipid homeostasis by regulating the presence of perilipin family members PLIN2 and PLIN3 at the lipid droplet surface and promoting the association of adipocyte surface triglyceride lipase (PNPLA2) with the lipid droplet to mediate lipolysis. Involved in autophagy by playing a role in early endosome function. Plays a role in organellar compartmentalization of secretory compartments including endoplasmic reticulum (ER)-Golgi intermediate compartment (ERGIC), Golgi, trans-Golgi network (TGN) and recycling endosomes, and in biosynthetic transport of CAV1.

Bos taurus (taxid: 9913)

>sp|D2SW95|COPB_PIG Coatomer subunit beta OS=Sus scrofa GN=COPB1 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 8/82 (9%)

Query: 1   MLEAKSQEEASTQKAK-EKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIG 59
           ML AK +EE  +QK + EK    VQPDDPISF++L++   +E    E+ F+LSL  A+  
Sbjct: 642 MLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAK--NEMNCKEDQFQLSLLAAMGN 699

Query: 60  SGPAAAQTQAADPSGASKLNKM 81
           +     + +AADP  ASKLNK+
Sbjct: 700 T----QRKEAADPL-ASKLNKV 716

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. Plays a functional role in facilitating the transport of kappa-type opioid receptor mRNAs into axons and enhances translation of these proteins. Required for limiting lipid storage in lipid droplets. Involved in lipid homeostasis by regulating the presence of perilipin family members PLIN2 and PLIN3 at the lipid droplet surface and promoting the association of adipocyte surface triglyceride lipase (PNPLA2) with the lipid droplet to mediate lipolysis. Involved in the Golgi disassembly and reassembly processes during cell cycle. Involved in autophagy by playing a role in early endosome function. Plays a role in organellar compartmentalization of secretory compartments including endoplasmic reticulum (ER)-Golgi intermediate compartment (ERGIC), Golgi, trans-Golgi network (TGN) and recycling endosomes, and in biosynthetic transport of CAV1.

Sus scrofa (taxid: 9823)

>sp|P23514|COPB_RAT Coatomer subunit beta OS=Rattus norvegicus GN=Copb1 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 8/82 (9%)

Query: 1   MLEAKSQEEASTQKAK-EKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIG 59
           ML AK +EE  +QK + EK    VQPDDPISF++L++   +E    E+ F+LSL  A+  
Sbjct: 642 MLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAK--NEMNCKEDQFQLSLLAAMGN 699

Query: 60  SGPAAAQTQAADPSGASKLNKM 81
           +     + +AADP  ASKLNK+
Sbjct: 700 T----QRKEAADPL-ASKLNKV 716

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. Involved in the Golgi disassembly and reassembly processes during cell cycle. Involved in autophagy by playing a role in early endosome function. Plays a role in organellar compartmentalization of secretory compartments including endoplasmic reticulum (ER)-Golgi intermediate compartment (ERGIC), Golgi, trans-Golgi network (TGN) and recycling endosomes, and in biosynthetic transport of CAV1. Plays a functional role in facilitating the transport of kappa-type opioid receptor mRNAs into axons and enhances translation of these proteins in the axonal compartment of dorsal root ganglion (DRG) cells. Required for limiting lipid storage in lipid droplets. Involved in lipid homeostasis by regulating the presence of perilipin family members PLIN2 and PLIN3 at the lipid droplet surface and promoting the association of adipocyte triglyceride lipase (PNPLA2) with the lipid droplet surface to mediate lipolysis.

Rattus norvegicus (taxid: 10116)

>sp|Q9JIF7|COPB_MOUSE Coatomer subunit beta OS=Mus musculus GN=Copb1 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 8/82 (9%)

Query: 1   MLEAKSQEEASTQKAK-EKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIG 59
           ML AK +EE  +QK + EK    VQPDDPISF++L++   +E    E+ F+LSL  A+  
Sbjct: 642 MLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAK--NEMNCKEDQFQLSLLAAMGN 699

Query: 60  SGPAAAQTQAADPSGASKLNKM 81
           +     + +AADP  ASKLNK+
Sbjct: 700 T----QRKEAADPL-ASKLNKV 716

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. Involved in the Golgi disassembly and reassembly processes during cell cycle. Involved in autophagy by playing a role in early endosome function. Plays a role in organellar compartmentalization of secretory compartments including endoplasmic reticulum (ER)-Golgi intermediate compartment (ERGIC), Golgi, trans-Golgi network (TGN) and recycling endosomes, and in biosynthetic transport of CAV1 (By similarity). Plays a functional role in facilitating the transport of kappa-type opioid receptor mRNAs into axons and enhances translation of these proteins in cortical neurons. Required for limiting lipid storage in lipid droplets. Involved in lipid homeostasis by regulating the presence of perilipin family members PLIN2 and PLIN3 at the lipid droplet surface and promoting the association of adipocyte triglyceride lipase (PNPLA2) with the lipid droplet surface to mediate lipolysis.

Mus musculus (taxid: 10090)

>sp|Q66HV4|COPB_DANRE Coatomer subunit beta OS=Danio rerio GN=copb1 PE=2 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 8/82 (9%)

Query: 1   MLEAKSQEEASTQKAK-EKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIG 59
           ML  + +EE  +QK + EK    VQ DDPISF++L++   +E    E+ F+LSL  A+  
Sbjct: 642 MLAVRLEEEKLSQKKESEKRNVTVQADDPISFMQLTAK--NEMASKEDQFQLSLLAAMGN 699

Query: 60  SGPAAAQTQAADPSGASKLNKM 81
           +     + +A DP  ASKLNK+
Sbjct: 700 T----QRKEATDPL-ASKLNKV 716


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.302    0.120    0.316 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,737,020
Number of Sequences: 539616
Number of extensions: 892222
Number of successful extensions: 1513
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1501
Number of HSP's gapped (non-prelim): 16
length of query: 81
length of database: 191,569,459
effective HSP length: 52
effective length of query: 29
effective length of database: 163,509,427
effective search space: 4741773383
effective search space used: 4741773383
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 55 (25.8 bits)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
193692994	960	PREDICTED: coatomer subunit beta-like [A	0.962	0.081	0.566	2e-12
170034388	956	coatomer subunit beta [Culex quinquefasc	0.938	0.079	0.506	2e-11
405964798	963	Coatomer subunit beta [Crassostrea gigas	0.913	0.076	0.530	7e-11
189234428	957	PREDICTED: similar to coatomer subunit b	0.925	0.078	0.493	7e-11
158302111	959	AGAP001399-PA [Anopheles gambiae str. PE	0.938	0.079	0.5	6e-10
157106589	956	coatomer beta subunit [Aedes aegypti] gi	0.938	0.079	0.469	1e-09
312373694	995	hypothetical protein AND_17130 [Anophele	0.938	0.076	0.475	2e-09
195432256	959	GK19864 [Drosophila willistoni] gi|19416	0.938	0.079	0.469	2e-09
110763426	949	PREDICTED: coatomer subunit beta [Apis m	0.950	0.081	0.5	3e-09
195567509	846	GD15643 [Drosophila simulans] gi|1942047	0.938	0.089	0.493	4e-09

>gi|193692994|ref|XP_001949960.1| PREDICTED: coatomer subunit beta-like [Acyrthosiphon pisum]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/83 (56%), Positives = 56/83 (67%), Gaps = 5/83 (6%)

Query: 1   MLEAKSQEEASTQKAKEKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIGS 60
           ML AK  EE+S +KAKEKPGHKV  DD I FL  +S+ G+E  GTENVFELSLNQA+ G 
Sbjct: 643 MLAAKEDEESSNKKAKEKPGHKVNVDDAIVFLR-TSSNGTE--GTENVFELSLNQAVAGG 699

Query: 61  GPAAAQT--QAADPSGASKLNKM 81
           G     +   A+  S  SKLNK+
Sbjct: 700 GSIHHSSGDGASGLSTNSKLNKV 722

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170034388|ref|XP_001845056.1| coatomer subunit beta [Culex quinquefasciatus] gi|167875689|gb|EDS39072.1| coatomer subunit beta [Culex quinquefasciatus]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/81 (50%), Positives = 56/81 (69%), Gaps = 5/81 (6%)

Query: 1   MLEAKSQEEASTQKAKEKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIGS 60
           ML A+++EE  TQK K+K   K+QPDDPI+F +LSS +  + G  ENVFE SLNQAL G+
Sbjct: 643 MLSAQNEEEQQTQKDKQKVAAKIQPDDPIAFTQLSSGKNDQLG--ENVFESSLNQALAGT 700

Query: 61  GPAAAQTQAADPSGASKLNKM 81
             + A +  A P+  +KLNK+
Sbjct: 701 -KSTALSDVASPN--NKLNKV 718

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405964798|gb|EKC30244.1| Coatomer subunit beta [Crassostrea gigas]

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/81 (53%), Positives = 52/81 (64%), Gaps = 7/81 (8%)

Query: 1   MLEAKSQEEASTQKAKEKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIGS 60
           ML AK +EE   Q+A EK   KVQ DDPISF +L     +E G TEN+FEL+L+QAL  S
Sbjct: 651 MLAAKMEEEKELQRASEKRTVKVQADDPISFAQL--VNKAEMGATENMFELTLSQALGMS 708

Query: 61  GPAAAQTQAADPSGASKLNKM 81
           G      +  DP GASKLNK+
Sbjct: 709 GK-----KDGDPIGASKLNKV 724

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|189234428|ref|XP_001816488.1| PREDICTED: similar to coatomer subunit beta [Tribolium castaneum] gi|270001762|gb|EEZ98209.1| hypothetical protein TcasGA2_TC000641 [Tribolium castaneum]

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 53/81 (65%), Gaps = 6/81 (7%)

Query: 1   MLEAKSQEEASTQKAKEKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIGS 60
           ML AK  EEA  QKAKEK G+ +Q DDPI+F++L + +  E G  ENVFE SL+QAL+G 
Sbjct: 642 MLVAKEIEEALNQKAKEKAGNVIQADDPINFMQLQADKSGELG--ENVFETSLSQALVGG 699

Query: 61  GPAAAQTQAADPSGASKLNKM 81
               + T     +G +KLNK+
Sbjct: 700 RVGGSDTS----TGVNKLNKV 716

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158302111|ref|XP_321735.4| AGAP001399-PA [Anopheles gambiae str. PEST] gi|157012794|gb|EAA01097.4| AGAP001399-PA [Anopheles gambiae str. PEST]

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 57/82 (69%), Gaps = 6/82 (7%)

Query: 1   MLEAKSQEEASTQKAKE-KPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIG 59
           ML A+S+E+A  +K K+ K   K+QPDDPI+F +L++ +  + G  ENVFELSLNQAL G
Sbjct: 645 MLTAQSEEKAQEKKDKQQKNAAKIQPDDPIAFTQLANGKHDQLG--ENVFELSLNQALAG 702

Query: 60  SGPAAAQTQAADPSGASKLNKM 81
           +  + A T  A P+  SKLNK+
Sbjct: 703 T-KSTALTDVASPN--SKLNKV 721

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157106589|ref|XP_001649392.1| coatomer beta subunit [Aedes aegypti] gi|108879811|gb|EAT44036.1| AAEL004546-PA [Aedes aegypti]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/81 (46%), Positives = 53/81 (65%), Gaps = 5/81 (6%)

Query: 1   MLEAKSQEEASTQKAKEKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIGS 60
           ML A++ EE  TQK K+K   K+QPDDPI+F +L++ +  + G  ENVFE SLNQAL G+
Sbjct: 643 MLNAQNAEEQQTQKDKQKTAAKIQPDDPIAFTQLANGKNDQLG--ENVFESSLNQALAGT 700

Query: 61  GPAAAQTQAADPSGASKLNKM 81
                 +  A P+  +KLNK+
Sbjct: 701 -KNTTLSDVASPN--NKLNKV 718

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312373694|gb|EFR21393.1| hypothetical protein AND_17130 [Anopheles darlingi]

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/82 (47%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 1   MLEAKSQEEASTQKAKE-KPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIG 59
           ML A++ E+   QK K+ K   K+QPDDPI+F +L+  +  + G  ENVFELSLNQAL G
Sbjct: 645 MLSAQNDEKLQAQKDKQQKNAAKIQPDDPIAFTQLADGKNDQLG--ENVFELSLNQALAG 702

Query: 60  SGPAAAQTQAADPSGASKLNKM 81
           + P      A   S  SKLNK+
Sbjct: 703 TKPTGLTDVA---SLNSKLNKI 721

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195432256|ref|XP_002064142.1| GK19864 [Drosophila willistoni] gi|194160227|gb|EDW75128.1| GK19864 [Drosophila willistoni]

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/81 (46%), Positives = 54/81 (66%), Gaps = 5/81 (6%)

Query: 1   MLEAKSQEEASTQKAKEKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIGS 60
           ML+A+ +E+    K K++   KVQPDDP++F +LS+ R ++ G  ENVFE SLNQAL GS
Sbjct: 649 MLDAQQEEDQRVLKEKQRAAAKVQPDDPVAFAQLSNGRDNQLG--ENVFESSLNQALAGS 706

Query: 61  GPAAAQTQAADPSGASKLNKM 81
              A  +  A P+  +KLNK+
Sbjct: 707 -KTAQLSDIASPN--NKLNKV 724

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110763426|ref|XP_001120953.1| PREDICTED: coatomer subunit beta [Apis mellifera]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 55/82 (67%), Gaps = 5/82 (6%)

Query: 1   MLEAKSQEEASTQKAKEKPGHKVQPDDPISFLELSSARGSEF-GGTENVFELSLNQALIG 59
           ML AK++E++  QKAKEKPG+ VQ DDPI FL+LS  RGS+  GG  +VFE SL+ A+  
Sbjct: 633 MLAAKAEEDSQNQKAKEKPGNVVQVDDPIQFLQLS--RGSDLTGGAGDVFEQSLSAAV-- 688

Query: 60  SGPAAAQTQAADPSGASKLNKM 81
           +G   A   A  PS  SK+ ++
Sbjct: 689 AGRPGASGDAPAPSALSKVTQL 710

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195567509|ref|XP_002107302.1| GD15643 [Drosophila simulans] gi|194204708|gb|EDX18284.1| GD15643 [Drosophila simulans]

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/81 (49%), Positives = 52/81 (64%), Gaps = 5/81 (6%)

Query: 1   MLEAKSQEEASTQKAKEKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIGS 60
           ML+A+  E+    K K+K   KVQPDDP+ F +LS+ R ++ G  ENVFE SLNQAL GS
Sbjct: 536 MLDAQHDEDQRMLKEKQKATAKVQPDDPVLFAQLSNGRDNQLG--ENVFESSLNQALAGS 593

Query: 61  GPAAAQTQAADPSGASKLNKM 81
              A  +  A P+  SKLNK+
Sbjct: 594 -KNAQLSDVASPN--SKLNKV 611

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
FB|FBgn0008635	964	betaCop "beta-coatomer protein	0.938	0.078	0.493	8.8e-11
UNIPROTKB|Q5ZIA5	953	COPB1 "Coatomer subunit beta"	0.913	0.077	0.463	1.1e-07
UNIPROTKB|A0JN39	953	COPB1 "Coatomer subunit beta"	0.913	0.077	0.463	2.3e-07
UNIPROTKB|E2R9A2	953	COPB1 "Coatomer subunit beta"	0.913	0.077	0.463	2.3e-07
UNIPROTKB|P53618	953	COPB1 "Coatomer subunit beta"	0.913	0.077	0.463	2.3e-07
UNIPROTKB|D2SW95	953	COPB1 "Coatomer subunit beta"	0.913	0.077	0.463	2.3e-07
MGI|MGI:1917599	953	Copb1 "coatomer protein comple	0.913	0.077	0.463	2.3e-07
RGD|620861	953	Copb1 "coatomer protein comple	0.913	0.077	0.463	2.3e-07
ZFIN|ZDB-GENE-030219-38	953	copb1 "coatomer protein comple	0.913	0.077	0.414	1.5e-05

FB|FBgn0008635 betaCop "beta-coatomer protein" [Drosophila melanogaster (taxid:7227)]

 Score = 163 (62.4 bits), Expect = 8.8e-11, P = 8.8e-11
 Identities = 40/81 (49%), Positives = 52/81 (64%)

Query:     1 MLEAKSQEEASTQKAKEKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIGS 60
             ML+A+  E+    K K+K   KVQPDDP+ F +LS+ R ++ G  ENVFE SLNQAL GS
Sbjct:   654 MLDAQHDEDQRMLKEKQKATAKVQPDDPVLFAQLSNGRDNQLG--ENVFESSLNQALAGS 711

Query:    61 GPAAAQTQAADPSGASKLNKM 81
               A   +  A P+  SKLNK+
Sbjct:   712 KNAQL-SDVASPN--SKLNKV 729

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=ISS;NAS

GO:0030126 "COPI vesicle coat" evidence=ISS;NAS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0010883 "regulation of lipid storage" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=IMP

UNIPROTKB|Q5ZIA5 COPB1 "Coatomer subunit beta" [Gallus gallus (taxid:9031)]

 Score = 134 (52.2 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 38/82 (46%), Positives = 53/82 (64%)

Query:     1 MLEAKSQEEASTQKAK-EKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIG 59
             ML AK +EE  +QK + EK    VQPDDPISF++L++   +E    E+ F+LSL  A+ G
Sbjct:   642 MLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAK--NEMSSKEDQFQLSLLAAM-G 698

Query:    60 SGPAAAQTQAADPSGASKLNKM 81
             +     + +AADP  ASKLNK+
Sbjct:   699 N---TQRKEAADPL-ASKLNKV 716

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|A0JN39 COPB1 "Coatomer subunit beta" [Bos taurus (taxid:9913)]

 Score = 131 (51.2 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 38/82 (46%), Positives = 53/82 (64%)

Query:     1 MLEAKSQEEASTQKAK-EKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIG 59
             ML AK +EE  +QK + EK    VQPDDPISF++L++   +E    E+ F+LSL  A+ G
Sbjct:   642 MLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAK--NEMNCKEDQFQLSLLAAM-G 698

Query:    60 SGPAAAQTQAADPSGASKLNKM 81
             +     + +AADP  ASKLNK+
Sbjct:   699 N---TQRKEAADPL-ASKLNKV 716

GO:0005886 "plasma membrane" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|E2R9A2 COPB1 "Coatomer subunit beta" [Canis lupus familiaris (taxid:9615)]

 Score = 131 (51.2 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 38/82 (46%), Positives = 53/82 (64%)

Query:     1 MLEAKSQEEASTQKAK-EKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIG 59
             ML AK +EE  +QK + EK    VQPDDPISF++L++   +E    E+ F+LSL  A+ G
Sbjct:   642 MLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAK--NEMNCKEDQFQLSLLAAM-G 698

Query:    60 SGPAAAQTQAADPSGASKLNKM 81
             +     + +AADP  ASKLNK+
Sbjct:   699 N---TQRKEAADPL-ASKLNKV 716

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|P53618 COPB1 "Coatomer subunit beta" [Homo sapiens (taxid:9606)]

 Score = 131 (51.2 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 38/82 (46%), Positives = 53/82 (64%)

Query:     1 MLEAKSQEEASTQKAK-EKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIG 59
             ML AK +EE  +QK + EK    VQPDDPISF++L++   +E    E+ F+LSL  A+ G
Sbjct:   642 MLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAK--NEMNCKEDQFQLSLLAAM-G 698

Query:    60 SGPAAAQTQAADPSGASKLNKM 81
             +     + +AADP  ASKLNK+
Sbjct:   699 N---TQRKEAADPL-ASKLNKV 716

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0030126 "COPI vesicle coat" evidence=ISS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=ISS

GO:0000139 "Golgi membrane" evidence=TAS

GO:0005798 "Golgi-associated vesicle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0048205 "COPI coating of Golgi vesicle" evidence=TAS

UNIPROTKB|D2SW95 COPB1 "Coatomer subunit beta" [Sus scrofa (taxid:9823)]

 Score = 131 (51.2 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 38/82 (46%), Positives = 53/82 (64%)

Query:     1 MLEAKSQEEASTQKAK-EKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIG 59
             ML AK +EE  +QK + EK    VQPDDPISF++L++   +E    E+ F+LSL  A+ G
Sbjct:   642 MLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAK--NEMNCKEDQFQLSLLAAM-G 698

Query:    60 SGPAAAQTQAADPSGASKLNKM 81
             +     + +AADP  ASKLNK+
Sbjct:   699 N---TQRKEAADPL-ASKLNKV 716

GO:0005886 "plasma membrane" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

MGI|MGI:1917599 Copb1 "coatomer protein complex, subunit beta 1" [Mus musculus (taxid:10090)]

 Score = 131 (51.2 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 38/82 (46%), Positives = 53/82 (64%)

Query:     1 MLEAKSQEEASTQKAK-EKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIG 59
             ML AK +EE  +QK + EK    VQPDDPISF++L++   +E    E+ F+LSL  A+ G
Sbjct:   642 MLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAK--NEMNCKEDQFQLSLLAAM-G 698

Query:    60 SGPAAAQTQAADPSGASKLNKM 81
             +     + +AADP  ASKLNK+
Sbjct:   699 N---TQRKEAADPL-ASKLNKV 716

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO;IDA

GO:0005798 "Golgi-associated vesicle" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=ISO

GO:0030137 "COPI-coated vesicle" evidence=IDA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

RGD|620861 Copb1 "coatomer protein complex, subunit beta 1" [Rattus norvegicus (taxid:10116)]

 Score = 131 (51.2 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 38/82 (46%), Positives = 53/82 (64%)

Query:     1 MLEAKSQEEASTQKAK-EKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIG 59
             ML AK +EE  +QK + EK    VQPDDPISF++L++   +E    E+ F+LSL  A+ G
Sbjct:   642 MLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAK--NEMNCKEDQFQLSLLAAM-G 698

Query:    60 SGPAAAQTQAADPSGASKLNKM 81
             +     + +AADP  ASKLNK+
Sbjct:   699 N---TQRKEAADPL-ASKLNKV 716

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO;IDA

GO:0005798 "Golgi-associated vesicle" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IDA

GO:0030126 "COPI vesicle coat" evidence=IDA

GO:0030137 "COPI-coated vesicle" evidence=ISO

ZFIN|ZDB-GENE-030219-38 copb1 "coatomer protein complex, subunit beta 1" [Danio rerio (taxid:7955)]

 Score = 114 (45.2 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 34/82 (41%), Positives = 50/82 (60%)

Query:     1 MLEAKSQEEASTQKAK-EKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIG 59
             ML  + +EE  +QK + EK    VQ DDPISF++L++   +E    E+ F+LSL  A+ G
Sbjct:   642 MLAVRLEEEKLSQKKESEKRNVTVQADDPISFMQLTAK--NEMASKEDQFQLSLLAAM-G 698

Query:    60 SGPAAAQTQAADPSGASKLNKM 81
             +     + +A DP  ASKLNK+
Sbjct:   699 N---TQRKEATDPL-ASKLNKV 716


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.302   0.120   0.316    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       81        81   0.00091  102 3  11 23  0.39    30
                                                     29  0.42    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  395 (42 KB)
  Total size of DFA:  69 KB (2062 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.86u 0.13s 9.99t   Elapsed:  00:00:01
  Total cpu time:  9.86u 0.13s 9.99t   Elapsed:  00:00:01
  Start:  Thu Aug 15 12:49:11 2013   End:  Thu Aug 15 12:49:12 2013

GO:0030117 "membrane coat" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030903 "notochord development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	81
pfam07718	279	pfam07718, Coatamer_beta_C, Coatamer beta C-termin	8e-05

>gnl|CDD|219533 pfam07718, Coatamer_beta_C, Coatamer beta C-terminal region

 Score = 38.6 bits (90), Expect = 8e-05
 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 7/58 (12%)

Query: 23 VQPDDPISFLELSSARGSEFGGTENVFELSLNQALIGSGPAAAQTQAADPSGASKLNK 80
          V PD PISF +LS  R ++    E+ F  SL  AL G   AA+       S +SKL+K
Sbjct: 1  VSPDKPISFSQLSPKRFADNNMGEDRFPSSLAAALGGEESAAS-------STSSKLHK 51

This family is found at the N-terminus of the coatamer beta subunit proteins (Beta-coat proteins). This C-terminal domain probably adapts the function of the N-terminal pfam01602 domain. Length = 279

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	81
PF07718	140	Coatamer_beta_C: Coatomer beta C-terminal region;	99.0
KOG1058|consensus	948		98.93

>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.00  E-value=1.9e-10  Score=80.24  Aligned_cols=48  Identities=40%  Similarity=0.481  Sum_probs=37.5

Q ss_pred             CCCCceeecccccccCCCCCCchhhhHhHHHHHhccCCCcccccccCCCccccccCCC
Q psy17940         24 QPDDPISFLELSSARGSEFGGTENVFELSLNQALIGSGPAAAQTQAADPSGASKLNKM   81 (81)
Q Consensus        24 Q~DD~I~FrQL~~~~~~~~~~~ed~~e~dL~~A~g~~~~~~~~~~~~~~~~~SKLnKV   81 (81)
                      ||||+|+||||+++  ......++++++||.+|+|...     ..   ..+.|||+||
T Consensus         1 q~D~~i~f~ql~~~--~~~~~~~~~~~~dl~~a~g~~~-----~~---~~~~skL~kv   48 (140)
T PF07718_consen    1 QPDDLISFRQLKGK--KALSGDEDDFEDDLSRATGSID-----KS---EDFSSKLNKV   48 (140)
T ss_pred             CCCCcEeheccccC--ccccccchhhhhhHHHhhCCcc-----cc---chhhhhhccE
Confidence            89999999999887  4444455789999999998543     23   4557999986

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat

>KOG1058|consensus

Probab=98.93  E-value=5e-10  Score=94.78  Aligned_cols=72  Identities=38%  Similarity=0.421  Sum_probs=52.6

Q ss_pred             CchhhhHHHHHhhhhhhCCCCCCCCCCceeecccccccCCCCCCchhhhHhHHHHHhccCCCcccccccCCCccccccCC
Q psy17940          1 MLEAKSQEEASTQKAKEKPGHKVQPDDPISFLELSSARGSEFGGTENVFELSLNQALIGSGPAAAQTQAADPSGASKLNK   80 (81)
Q Consensus         1 mL~ak~~e~~~~~k~~~~~~~~vQ~DD~I~FrQL~~~~~~~~~~~ed~~e~dL~~A~g~~~~~~~~~~~~~~~~~SKLnK   80 (81)
                      |+.++..+++...+. +..+..+||||||+|+||++.  .+....+|.|++||.+|+|...     ... +.+.+|||+|
T Consensus       642 m~~~~~~~~~~~~~~-~~~~~~~~~ddpI~f~q~~~~--~s~~~~en~fe~~L~~A~g~~~-----~~~-~~s~~sKL~k  712 (948)
T KOG1058|consen  642 MIDAKKKRRKEELLK-KSQKTTAQPDDPINFRQLRSG--RSDERGENQFEEDLVQATGDAQ-----KAE-DGSPASKLNK  712 (948)
T ss_pred             HhhHHHHHHHHHHHh-hhccccCCCCCccchHhhccc--chhhhhhhHHHHHHHHHhcccc-----ccc-cCCcHHHhhc
Confidence            566766666654444 567788999999999999864  3434478899999999999664     332 2333799999


Q ss_pred             C
Q psy17940         81 M   81 (81)
Q Consensus        81 V   81 (81)
                      |
T Consensus       713 V  713 (948)
T KOG1058|consen  713 V  713 (948)
T ss_pred             e
Confidence            7

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00