Psyllid ID: psy18052

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYHQSHEAKSPYEESLTSFICKVCTWFCISRVQDMITCSYIEWF
Secondary Structure (PSIPRED)
ccccccEEEEEEEEEEcccccccEEEEEEcccccccccEEccEEEEEcccccccEEEccccEEcccccccccEEEEEEccEEEEEEEEcEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEcccccccccEEEEEEcccccccccccccEEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHEcHEEEcc
Coil and Loop (DISEMBL)
msaqgsktgvlrfkgttqfaqgewcgveldepigkndgkfsagSTFIWLCALILGyhqsheakspyeesLTSFICKVCTWFCISRVQDMITCSYIEWF
Flexible Loop (DISEMBL)
msaqgsktgvlrfkgttqfaqgEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYHQSHEAKSPYEESLTSFICKVCTWFCISRVQDMITCSYIEWF
Low Complexity Region (SEG)
MSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYHQSHEAKSPYEESLTSFICKVCTWFCISRVQDMITCSYIEWF
Disordered region (IsUnstruct)
*********VLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYHQSHEAKSPYEESLTSFICKVCTWFCISRVQDMITCSYIEW*
Disordered Region (DISOPRED)
*****SKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH******************KVCTWFCISRVQDMITCSYIEWF
Disordered Region (DISEMBL)
********GVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYHQSHE********LTSFICKVCTWFCISRVQDMITCSYIEWF
Disordered Region (DISPRO)
*****SKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYHQ**********SLTSFICKVCTWFCISRVQDMITCSYIEWF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYHQSHEAKSPYEESLTSFICKVCTWFCISRVQDMITCSYIEWF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	98	2.2.26 [Sep-21-2011]
O55156	1046	CAP-Gly domain-containing	yes	N/A	0.428	0.040	0.642	3e-11
Q9Z0H8	1047	CAP-Gly domain-containing	yes	N/A	0.428	0.040	0.642	3e-11
Q9UDT6	1046	CAP-Gly domain-containing	yes	N/A	0.428	0.040	0.642	3e-11
Q922J3	1391	CAP-Gly domain-containing	no	N/A	0.428	0.030	0.642	5e-11
P30622	1438	CAP-Gly domain-containing	no	N/A	0.428	0.029	0.642	5e-11
O42184	1433	CAP-Gly domain-containing	no	N/A	0.428	0.029	0.642	5e-11
Q5R686	547	CAP-Gly domain-containing	no	N/A	0.448	0.080	0.630	4e-10
B9EHT4	547	CAP-Gly domain-containing	no	N/A	0.448	0.080	0.630	4e-10
Q96DZ5	547	CAP-Gly domain-containing	no	N/A	0.448	0.080	0.630	4e-10
Q9VJE5	1690	Restin homolog OS=Drosoph	no	N/A	0.377	0.021	0.702	7e-10

>sp|O55156|CLIP2_RAT CAP-Gly domain-containing linker protein 2 OS=Rattus norvegicus GN=Clip2 PE=1 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 5   GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
           G+KTGV+R+ G T FA+GEWCGVELDEP+GKNDG  +    F
Sbjct: 230 GTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYF 271

Seems to link microtubules to dendritic lamellar body (DLB), a membranous organelle predominantly present in bulbous dendritic appendages of neurons linked by dendrodendritic gap junctions. May operates in the control of brain-specific organelle translocations.
Rattus norvegicus (taxid: 10116)

>sp|Q9Z0H8|CLIP2_MOUSE CAP-Gly domain-containing linker protein 2 OS=Mus musculus GN=Clip2 PE=1 SV=2

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 5   GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
           G+KTGV+R+ G T FA+GEWCGVELDEP+GKNDG  +    F
Sbjct: 230 GTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYF 271

Seems to link microtubules to dendritic lamellar body (DLB), a membranous organelle predominantly present in bulbous dendritic appendages of neurons linked by dendrodendritic gap junctions. May operates in the control of brain-specific organelle translocations.

Mus musculus (taxid: 10090)

>sp|Q9UDT6|CLIP2_HUMAN CAP-Gly domain-containing linker protein 2 OS=Homo sapiens GN=CLIP2 PE=1 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 5   GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
           G+KTGV+R+ G T FA+GEWCGVELDEP+GKNDG  +    F
Sbjct: 229 GTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYF 270

Seems to link microtubules to dendritic lamellar body (DLB), a membranous organelle predominantly present in bulbous dendritic appendages of neurons linked by dendrodendritic gap junctions. May operates in the control of brain-specific organelle translocations.

Homo sapiens (taxid: 9606)

>sp|Q922J3|CLIP1_MOUSE CAP-Gly domain-containing linker protein 1 OS=Mus musculus GN=Clip1 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 32/42 (76%)

Query: 5   GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
           G+K GV+RF G T FA+GEWCGVELDEP+GKNDG  +    F
Sbjct: 221 GTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYF 262

Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. Promotes microtubule growth and microtubule bundling. Links cytoplasmic vesicles to microtubules and thereby plays an important role in intracellular vesicle trafficking. Plays a role macropinocytosis and endosome trafficking.

Mus musculus (taxid: 10090)

>sp|P30622|CLIP1_HUMAN CAP-Gly domain-containing linker protein 1 OS=Homo sapiens GN=CLIP1 PE=1 SV=2

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 32/42 (76%)

Query: 5   GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
           G+K GV+RF G T FA+GEWCGVELDEP+GKNDG  +    F
Sbjct: 222 GTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYF 263

Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. Promotes microtubule growth and microtubule bundling. Links cytoplasmic vesicles to microtubules and thereby plays an important role in intracellular vesicle trafficking. Plays a role macropinocytosis and endosome trafficking.

Homo sapiens (taxid: 9606)

>sp|O42184|CLIP1_CHICK CAP-Gly domain-containing linker protein 1 OS=Gallus gallus GN=CLIP1 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 32/42 (76%)

Query: 5   GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
           G+K GV+RF G T FA+GEWCGVELDEP+GKNDG  +    F
Sbjct: 225 GTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYF 266

Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. Promotes microtubule growth and microtubule bundling. Links cytoplasmic vesicles to microtubules and thereby plays an important role in intracellular vesicle trafficking. Plays a role macropinocytosis and endosome trafficking.

Gallus gallus (taxid: 9031)

>sp|Q5R686|CLIP3_PONAB CAP-Gly domain-containing linker protein 3 OS=Pongo abelii GN=CLIP3 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/46 (63%), Positives = 33/46 (71%), Gaps = 2/46 (4%)

Query: 5   GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLC 50
           G KTG LRF GTT+FA G+W GVELDEP GKNDG  S G    ++C
Sbjct: 304 GQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDG--SVGGVRYFIC 347

Functions as a cytoplasmic linker protein. Involved in TGN-endosome dynamics.

Pongo abelii (taxid: 9601)

>sp|B9EHT4|CLIP3_MOUSE CAP-Gly domain-containing linker protein 3 OS=Mus musculus GN=Clip3 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/46 (63%), Positives = 33/46 (71%), Gaps = 2/46 (4%)

Query: 5   GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLC 50
           G KTG LRF GTT+FA G+W GVELDEP GKNDG  S G    ++C
Sbjct: 304 GQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDG--SVGGVRYFIC 347

Functions as a cytoplasmic linker protein. Involved in TGN-endosome dynamics.

Mus musculus (taxid: 10090)

>sp|Q96DZ5|CLIP3_HUMAN CAP-Gly domain-containing linker protein 3 OS=Homo sapiens GN=CLIP3 PE=1 SV=3

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/46 (63%), Positives = 33/46 (71%), Gaps = 2/46 (4%)

Query: 5   GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLC 50
           G KTG LRF GTT+FA G+W GVELDEP GKNDG  S G    ++C
Sbjct: 304 GQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDG--SVGGVRYFIC 347

Functions as a cytoplasmic linker protein. Involved in TGN-endosome dynamics.

Homo sapiens (taxid: 9606)

>sp|Q9VJE5|CL190_DROME Restin homolog OS=Drosophila melanogaster GN=CLIP-190 PE=1 SV=1

 Score = 62.4 bits (150), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/37 (70%), Positives = 29/37 (78%)

Query: 2   SAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
           S  GS+ G+LR+ G TQFA G WCGVELDEP GKNDG
Sbjct: 247 SGFGSRPGILRYLGETQFAPGNWCGVELDEPSGKNDG 283

Together CLIP-190 and jar may coordinate the interaction between the actin and microtubule cytoskeleton. May link endocytic vesicles to microtubules. May play a role in formation of furrows during cellularization.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
322790005	1584	hypothetical protein SINV_05857 [Solenop	0.336	0.020	0.711	1e-12
328779692	1608	PREDICTED: restin homolog [Apis mellifer	0.377	0.023	0.837	8e-12
345494045	1659	PREDICTED: CAP-Gly domain-containing lin	0.459	0.027	0.688	1e-11
307197537	1595	Restin-like protein [Harpegnathos saltat	0.377	0.023	0.810	1e-11
328794497	325	PREDICTED: restin homolog [Apis mellifer	0.377	0.113	0.837	1e-11
350411733	1609	PREDICTED: restin homolog [Bombus impati	0.377	0.022	0.837	2e-11
340711265	1609	PREDICTED: CAP-Gly domain-containing lin	0.377	0.022	0.837	2e-11
340711263	1639	PREDICTED: CAP-Gly domain-containing lin	0.377	0.022	0.837	2e-11
332027329	1584	CAP-Gly domain-containing linker protein	0.663	0.041	0.521	4e-11
242012652	1640	retiin, putative [Pediculus humanus corp	0.459	0.027	0.644	9e-11

>gi|322790005|gb|EFZ15081.1| hypothetical protein SINV_05857 [Solenopsis invicta]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/45 (71%), Positives = 38/45 (84%)

Query: 2   SAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
           S+QGSKTGVLR++G+T+FA GEWCGVELDEPIGKNDG  +    F
Sbjct: 161 SSQGSKTGVLRYQGSTEFAAGEWCGVELDEPIGKNDGSVNGKRYF 205

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328779692|ref|XP_396089.4| PREDICTED: restin homolog [Apis mellifera]

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/37 (83%), Positives = 35/37 (94%)

Query: 2   SAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
           S+QGSKTGVLR+ GTT+FA GEWCGVELD+PIGKNDG
Sbjct: 179 SSQGSKTGVLRYYGTTEFAVGEWCGVELDDPIGKNDG 215

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345494045|ref|XP_001606131.2| PREDICTED: CAP-Gly domain-containing linker protein 1-like [Nasonia vitripennis]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/45 (68%), Positives = 36/45 (80%)

Query: 2   SAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
           S+QGSKTGVLR+ G T+FA GEWCGVELDEP+GKNDG  +    F
Sbjct: 193 SSQGSKTGVLRYMGVTEFAPGEWCGVELDEPVGKNDGSVADKRYF 237

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307197537|gb|EFN78767.1| Restin-like protein [Harpegnathos saltator]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/37 (81%), Positives = 35/37 (94%)

Query: 2   SAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
           S+QGSKTGVL++ GTT+FA GEWCGVELDEP+GKNDG
Sbjct: 177 SSQGSKTGVLKYLGTTEFALGEWCGVELDEPVGKNDG 213

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328794497|ref|XP_001122870.2| PREDICTED: restin homolog [Apis mellifera]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/37 (83%), Positives = 35/37 (94%)

Query: 2   SAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
           S+QGSKTGVLR+ GTT+FA GEWCGVELD+PIGKNDG
Sbjct: 202 SSQGSKTGVLRYYGTTEFAVGEWCGVELDDPIGKNDG 238

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350411733|ref|XP_003489438.1| PREDICTED: restin homolog [Bombus impatiens]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/37 (83%), Positives = 34/37 (91%)

Query: 2   SAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
           S+QGSKTGVLR+ G T+FA GEWCGVELDEPIGKNDG
Sbjct: 180 SSQGSKTGVLRYIGITEFALGEWCGVELDEPIGKNDG 216

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711265|ref|XP_003394199.1| PREDICTED: CAP-Gly domain-containing linker protein 1-like isoform 2 [Bombus terrestris]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/37 (83%), Positives = 34/37 (91%)

Query: 2   SAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
           S+QGSKTGVLR+ G T+FA GEWCGVELDEPIGKNDG
Sbjct: 180 SSQGSKTGVLRYIGITEFALGEWCGVELDEPIGKNDG 216

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711263|ref|XP_003394198.1| PREDICTED: CAP-Gly domain-containing linker protein 1-like isoform 1 [Bombus terrestris]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/37 (83%), Positives = 34/37 (91%)

Query: 2   SAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
           S+QGSKTGVLR+ G T+FA GEWCGVELDEPIGKNDG
Sbjct: 203 SSQGSKTGVLRYIGITEFALGEWCGVELDEPIGKNDG 239

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027329|gb|EGI67413.1| CAP-Gly domain-containing linker protein 1 [Acromyrmex echinatior]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/69 (52%), Positives = 47/69 (68%), Gaps = 4/69 (5%)

Query: 2   SAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILG-YHQSH 60
           S+QGSKTG+LR+ G  +FA GEWCGVELDEPIGKNDG  +    F   C+   G +   H
Sbjct: 168 SSQGSKTGILRYHGLAEFAAGEWCGVELDEPIGKNDGSVNDKRYF--ECSPKYGLFAPVH 225

Query: 61  E-AKSPYEE 68
           + ++SPY +
Sbjct: 226 KVSRSPYNK 234

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012652|ref|XP_002427043.1| retiin, putative [Pediculus humanus corporis] gi|212511291|gb|EEB14305.1| retiin, putative [Pediculus humanus corporis]

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/45 (64%), Positives = 36/45 (80%)

Query: 2   SAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
           S+QGSK G+LR+ GTT+FA GEWCGVELD+P+GKNDG  +    F
Sbjct: 230 SSQGSKAGLLRYLGTTEFAAGEWCGVELDDPLGKNDGSVAGVRYF 274

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
UNIPROTKB|F1REW5	1204	CLIP1 "Uncharacterized protein	0.418	0.034	0.666	3.2e-10
UNIPROTKB|J9P0I9	702	CLIP2 "Uncharacterized protein	0.418	0.058	0.666	3.2e-10
MGI|MGI:1928401	1391	Clip1 "CAP-GLY domain containi	0.418	0.029	0.666	3.5e-10
UNIPROTKB|O42184	1433	CLIP1 "CAP-Gly domain-containi	0.418	0.028	0.666	3.8e-10
UNIPROTKB|F1RJL6	827	CLIP2 "Uncharacterized protein	0.418	0.049	0.666	4e-10
UNIPROTKB|E1BQI8	1040	CLIP2 "Uncharacterized protein	0.418	0.039	0.666	5.4e-10
UNIPROTKB|Q9UDT6	1046	CLIP2 "CAP-Gly domain-containi	0.418	0.039	0.666	5.4e-10
RGD|62019	1046	Clip2 "CAP-GLY domain containi	0.418	0.039	0.666	5.4e-10
UNIPROTKB|E1BGH3	1047	CLIP2 "Uncharacterized protein	0.418	0.039	0.666	5.4e-10
MGI|MGI:1313136	1047	Clip2 "CAP-GLY domain containi	0.418	0.039	0.666	5.4e-10

UNIPROTKB|F1REW5 CLIP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 154 (59.3 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
 Identities = 28/42 (66%), Positives = 34/42 (80%)

Query:     5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
             G+K GV+RF G T FA+GEWCGVELDEP+GKNDG   AG+ +
Sbjct:     3 GTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAV-AGTRY 43

GO:0051010 "microtubule plus-end binding" evidence=IEA

GO:0044354 "macropinosome" evidence=IEA

GO:0035371 "microtubule plus end" evidence=IEA

GO:0031116 "positive regulation of microtubule polymerization" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0001578 "microtubule bundle formation" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|J9P0I9 CLIP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 156 (60.0 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 28/42 (66%), Positives = 35/42 (83%)

Query:     5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
             G+KTGV+R+ G T FA+GEWCGVELDEP+GKNDG   AG+ +
Sbjct:   232 GTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAV-AGTRY 272

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

MGI|MGI:1928401 Clip1 "CAP-GLY domain containing linker protein 1" [Mus musculus (taxid:10090)]

 Score = 154 (59.3 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
 Identities = 28/42 (66%), Positives = 34/42 (80%)

Query:     5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
             G+K GV+RF G T FA+GEWCGVELDEP+GKNDG   AG+ +
Sbjct:   221 GTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAV-AGTRY 261

GO:0001578 "microtubule bundle formation" evidence=ISO

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IDA

GO:0005881 "cytoplasmic microtubule" evidence=IDA

GO:0005882 "intermediate filament" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0008017 "microtubule binding" evidence=ISO;IDA

GO:0008270 "zinc ion binding" evidence=ISO

GO:0015630 "microtubule cytoskeleton" evidence=ISO

GO:0015631 "tubulin binding" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0031116 "positive regulation of microtubule polymerization" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0035371 "microtubule plus end" evidence=IDA

GO:0042995 "cell projection" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051010 "microtubule plus-end binding" evidence=ISO

UNIPROTKB|O42184 CLIP1 "CAP-Gly domain-containing linker protein 1" [Gallus gallus (taxid:9031)]

 Score = 154 (59.3 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
 Identities = 28/42 (66%), Positives = 34/42 (80%)

Query:     5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
             G+K GV+RF G T FA+GEWCGVELDEP+GKNDG   AG+ +
Sbjct:   225 GTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAV-AGTRY 265

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0001578 "microtubule bundle formation" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0031116 "positive regulation of microtubule polymerization" evidence=IEA

GO:0035371 "microtubule plus end" evidence=IEA

GO:0044354 "macropinosome" evidence=IEA

GO:0051010 "microtubule plus-end binding" evidence=IEA

UNIPROTKB|F1RJL6 CLIP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 156 (60.0 bits), Expect = 4.0e-10, P = 4.0e-10
 Identities = 28/42 (66%), Positives = 35/42 (83%)

Query:     5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
             G+KTGV+R+ G T FA+GEWCGVELDEP+GKNDG   AG+ +
Sbjct:   229 GTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAV-AGTRY 269

GO:0005881 "cytoplasmic microtubule" evidence=IEA

UNIPROTKB|E1BQI8 CLIP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 156 (60.0 bits), Expect = 5.4e-10, P = 5.4e-10
 Identities = 28/42 (66%), Positives = 35/42 (83%)

Query:     5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
             G+KTGV+R+ G T FA+GEWCGVELDEP+GKNDG   AG+ +
Sbjct:   220 GTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAV-AGTRY 260

GO:0005881 "cytoplasmic microtubule" evidence=IEA

UNIPROTKB|Q9UDT6 CLIP2 "CAP-Gly domain-containing linker protein 2" [Homo sapiens (taxid:9606)]

 Score = 156 (60.0 bits), Expect = 5.4e-10, P = 5.4e-10
 Identities = 28/42 (66%), Positives = 35/42 (83%)

Query:     5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
             G+KTGV+R+ G T FA+GEWCGVELDEP+GKNDG   AG+ +
Sbjct:   229 GTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAV-AGTRY 269

GO:0005881 "cytoplasmic microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=TAS

RGD|62019 Clip2 "CAP-GLY domain containing linker protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 156 (60.0 bits), Expect = 5.4e-10, P = 5.4e-10
 Identities = 28/42 (66%), Positives = 35/42 (83%)

Query:     5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
             G+KTGV+R+ G T FA+GEWCGVELDEP+GKNDG   AG+ +
Sbjct:   230 GTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAV-AGTRY 270

GO:0005515 "protein binding" evidence=IPI

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0005881 "cytoplasmic microtubule" evidence=IEA;ISO;IDA

GO:0007026 "negative regulation of microtubule depolymerization" evidence=NAS

GO:0008017 "microtubule binding" evidence=IDA;TAS

GO:0030425 "dendrite" evidence=TAS

GO:0042599 "lamellar body" evidence=TAS

GO:0051010 "microtubule plus-end binding" evidence=IDA

UNIPROTKB|E1BGH3 CLIP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 156 (60.0 bits), Expect = 5.4e-10, P = 5.4e-10
 Identities = 28/42 (66%), Positives = 35/42 (83%)

Query:     5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
             G+KTGV+R+ G T FA+GEWCGVELDEP+GKNDG   AG+ +
Sbjct:   228 GTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAV-AGTRY 268

GO:0005881 "cytoplasmic microtubule" evidence=IEA

MGI|MGI:1313136 Clip2 "CAP-GLY domain containing linker protein 2" [Mus musculus (taxid:10090)]

 Score = 156 (60.0 bits), Expect = 5.4e-10, P = 5.4e-10
 Identities = 28/42 (66%), Positives = 35/42 (83%)

Query:     5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
             G+KTGV+R+ G T FA+GEWCGVELDEP+GKNDG   AG+ +
Sbjct:   230 GTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAV-AGTRY 270

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=ISO

GO:0005881 "cytoplasmic microtubule" evidence=ISO;IDA

GO:0008017 "microtubule binding" evidence=ISO

GO:0051010 "microtubule plus-end binding" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9UDT6	CLIP2_HUMAN	No assigned EC number	0.6428	0.4285	0.0401	yes	N/A
O55156	CLIP2_RAT	No assigned EC number	0.6428	0.4285	0.0401	yes	N/A
Q9Z0H8	CLIP2_MOUSE	No assigned EC number	0.6428	0.4285	0.0401	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	98
pfam01302	67	pfam01302, CAP_GLY, CAP-Gly domain	8e-14
smart01052	68	smart01052, CAP_GLY, Cytoskeleton-associated prote	8e-13
COG5244	669	COG5244, NIP100, Dynactin complex subunit involved	6e-10

>gnl|CDD|216424 pfam01302, CAP_GLY, CAP-Gly domain

 Score = 60.2 bits (147), Expect = 8e-14
 Identities = 20/36 (55%), Positives = 23/36 (63%)

Query: 5  GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
          G + G +R+ G   FA G W GVELDEP GKNDG  
Sbjct: 10 GGRRGTVRYVGPVPFAPGLWVGVELDEPRGKNDGSV 45

Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove. Length = 67

>gnl|CDD|214997 smart01052, CAP_GLY, Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network

 Score = 57.6 bits (140), Expect = 8e-13
 Identities = 21/38 (55%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 4  QGSKTGVLRFKGTTQFAQGEWCGVELDEP-IGKNDGKF 40
           G + G +R+ G T FA G W GVELDEP  GKNDG  
Sbjct: 9  GGGRRGTVRYVGPTPFAPGVWVGVELDEPLRGKNDGSV 46

A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove. Length = 68

>gnl|CDD|227569 COG5244, NIP100, Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell division and chromosome partitioning]

 Score = 53.9 bits (129), Expect = 6e-10
 Identities = 20/34 (58%), Positives = 25/34 (73%)

Query: 5  GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
          G K G +RF G T+F  G W G+ELD+P+GKNDG
Sbjct: 13 GDKFGTVRFIGKTKFKDGIWIGLELDDPVGKNDG 46

Length = 669

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	98
PF01302	69	CAP_GLY: CAP-Gly domain; InterPro: IPR000938 Cytos	99.89
KOG3206|consensus	234		99.8
COG5244	669	NIP100 Dynactin complex subunit involved in mitoti	99.68
KOG0971|consensus	1243		99.57
KOG4568|consensus	664		99.46
KOG3207|consensus	505		99.43
KOG0241|consensus	1714		98.82
KOG4568|consensus	664		98.81
KOG3556|consensus	724		98.63
PTZ00243	1560	ABC transporter; Provisional	93.44

>PF01302 CAP_GLY: CAP-Gly domain; InterPro: IPR000938 Cytoskeleton-associated proteins (CAP) are made of three distinct parts, an N-terminal section that is most probably globular and contains the CAP-Gly domain, a large central region predicted to be in an alpha-helical coiled-coil conformation and, finally, a short C-terminal globular domain

Probab=99.89  E-value=2.8e-23  Score=133.00  Aligned_cols=57  Identities=40%  Similarity=0.735  Sum_probs=50.7

Q ss_pred             CCCCceEEEEEEeecC-CCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--cccc
Q psy18052          3 AQGSKTGVLRFKGTTQ-FAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHE   61 (98)
Q Consensus         3 ~~g~~~GtVRyiG~~~-~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v   61 (98)
                      .+...+|+|||+|+++ ..++.|+|||||+|.|+|||+++|+|||  +|+|+||+|  |++|
T Consensus         9 ~~~~~~G~vryiG~~~~~~~g~~vGVEld~~~G~~dGt~~G~rYF--~c~~~~G~Fv~~~~v   68 (69)
T PF01302_consen    9 DPGGRRGTVRYIGPVPGFKSGIWVGVELDEPRGKNDGTVKGKRYF--ECPPNHGIFVRPSKV   68 (69)
T ss_dssp             STTTEEEEEEEEEE-SSSSSSEEEEEEESSSTSSBSSEETTEESS---SSTTTEEEEEGGGE
T ss_pred             eCCCCEEEEEEEeeCCCCCCCEEEEEEEcCCCCCCCcEECCEEEe--eeCCCCEEEecHHHC
Confidence            4678999999999999 7788999999999999999999999999  999999999  4555

The CAP-Gly domain is a conserved, glycine-rich domain of about 42 residues found in some CAPs []. Proteins known to contain this domain include restin (also known as cytoplasmic linker protein-170 or CLIP-170), a 160 kDa protein associated with intermediate filaments and that links endocytic vesicles to microtubules; vertebrate dynactin (150 kDa dynein-associated polypeptide; DAP) and Drosophila glued, a major component of activator I; yeast protein BIK1, which seems to be required for the formation or stabilisation of microtubules during mitosis and for spindle pole body fusion during conjugation; yeast protein NIP100 (NIP80); human protein CKAP1/TFCB; Schizosaccharomyces pombe protein alp11 and Caenorhabditis elegans hypothetical protein F53F4.3. The latter proteins contain a N-terminal ubiquitin domain and a C-terminal CAP-Gly domain. The crystal structure of the CAP-Gly domain of C. elegans F53F4.3 protein, solved by single wavelength sulphur-anomalous phasing, revealed a novel protein fold containing three beta-sheets. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove. Residues in the groove are highly conserved as measured from the information content of the aligned sequences. The C-terminal tail of another molecule in the crystal is bound in this groove []. ; PDB: 2CP6_A 2E4H_A 2E3H_A 3E2U_B 2HL3_B 3TQ7_Q 2HKQ_B 2HQH_A 2HKN_B 2HL5_C ....

>KOG3206|consensus

Probab=99.80  E-value=4.5e-20  Score=141.17  Aligned_cols=64  Identities=38%  Similarity=0.686  Sum_probs=57.7

Q ss_pred             CCCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccc--cccCCCcc
Q psy18052          3 AQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSH--EAKSPYEE   68 (98)
Q Consensus         3 ~~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~--v~~~p~~~   68 (98)
                      +..+++|+|||+|++++.+|.|+|||.|||.|||||+++|+|||  +|+|+||.|  |..  |...|+++
T Consensus       161 G~~~Rrg~vrYvG~~~~k~G~wiGVeydEplGKnDGsv~G~ryF--~c~p~yGgfVrP~~V~VgdfpeeD  228 (234)
T KOG3206|consen  161 GQAPRRGTVRYVGPLEFKPGYWIGVEYDEPLGKNDGSVNGKRYF--ECAPKYGGFVRPRAVTVGDFPEED  228 (234)
T ss_pred             CCCCcceEEEEecccCCCCceEEEEecCCccccCCCcccceEee--ecCCccCCccccceeeecCCChhh
Confidence            34459999999999999999999999999999999999999999  999999999  876  45677763

>COG5244 NIP100 Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell division and chromosome partitioning]

Probab=99.68  E-value=2.7e-17  Score=138.14  Aligned_cols=64  Identities=36%  Similarity=0.634  Sum_probs=56.5

Q ss_pred             CCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--cc--ccccCCCcccc
Q psy18052          5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QS--HEAKSPYEESL   70 (98)
Q Consensus         5 g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~--~v~~~p~~~~~   70 (98)
                      ++..|+|||+|.+.|..|+|+|||||+|.|+|||+++|+|||  .|..+||+|  |-  +|-+.|.+..+
T Consensus        13 ~~~~g~VrfiG~t~f~~GiW~GlELd~p~GkNDGSvnGvRYF--~Ckk~~giFir~~~~~ll~~~a~~e~   80 (669)
T COG5244          13 GDKFGTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYF--HCKKRHGIFIRPDDDSLLNGNAAYEK   80 (669)
T ss_pred             ccccceEEEeeecccccceEEEEEecCCCCCCCCccCceEEE--EecCCcceEEecCchhhhcchHHHHH
Confidence            567899999999999999999999999999999999999999  999999999  53  36666666433

>KOG0971|consensus

Probab=99.57  E-value=1.9e-15  Score=133.37  Aligned_cols=56  Identities=39%  Similarity=0.669  Sum_probs=52.2

Q ss_pred             CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--cccc
Q psy18052          4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHE   61 (98)
Q Consensus         4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v   61 (98)
                      .++..|+|.|+|.+.|+.|.|+||-||+|.||||||++|++||  +|++|||+|  ++.|
T Consensus        16 gknl~G~VayvG~T~FA~G~WvGVvLDep~GKNnGsVqg~qYF--~Cd~ncG~FVr~sq~   73 (1243)
T KOG0971|consen   16 GKNLQGTVAYVGQTQFAEGKWVGVVLDEPKGKNNGSVQGVQYF--ECDENCGVFVRSSQV   73 (1243)
T ss_pred             cCCccceEEEecccccccCceEEEEeccccCCCCCcccceeeE--ecCCCcceEeehhhh
Confidence            4677899999999999999999999999999999999999999  999999999  5443

>KOG4568|consensus

Probab=99.46  E-value=2.8e-14  Score=122.72  Aligned_cols=53  Identities=42%  Similarity=0.745  Sum_probs=50.7

Q ss_pred             CCCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee
Q psy18052          3 AQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH   57 (98)
Q Consensus         3 ~~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF   57 (98)
                      ..+...|.|||+|++++.+|+|+||+||+|.|||||+++|+|||  .|.+.+|+|
T Consensus        26 v~~~~~G~v~y~G~t~f~~G~w~GveL~~p~GKNdGsv~G~rYF--~ce~~kgif   78 (664)
T KOG4568|consen   26 VNNVELGFVRYAGETDFAKGIWAGVELLEPKGKNDGSVHGKRYF--QCEPKKGIF   78 (664)
T ss_pred             ecCCcceeeeeccCcccccceeeceeeccccCCCCcccchhhhh--cccccccee
Confidence            35668899999999999999999999999999999999999999  999999999

>KOG3207|consensus

Probab=99.43  E-value=1.6e-13  Score=114.40  Aligned_cols=56  Identities=27%  Similarity=0.466  Sum_probs=51.3

Q ss_pred             CCceEEEEEEeecCCCCCcEEEEEEcCC-CCCCCcEECcEEEecccCc-CCceee--ccccc
Q psy18052          5 GSKTGVLRFKGTTQFAQGEWCGVELDEP-IGKNDGKFSAGSTFIWLCA-LILGYH--QSHEA   62 (98)
Q Consensus         5 g~~~GtVRyiG~~~~~~g~wvGVELDep-~GknDGs~~G~rYF~~~C~-~~~GiF--p~~v~   62 (98)
                      +...+||||+|.+++.++.|+|||||+| +|||||+++|++||  .|. |+-|+|  |.+|.
T Consensus        12 ~~~~~Tvr~iG~V~g~~~~w~GvEWDd~~RGKH~G~vdgk~YF--~~q~P~GGSFik~~kV~   71 (505)
T KOG3207|consen   12 GGEIATVRYIGEVEGNNSKWYGVEWDDPVRGKHDGIVDGKRYF--QTQHPNGGSFIKPGKVK   71 (505)
T ss_pred             cCEEEEEEEEEEEcCCCCcceeeEecCCCccccCceecceeee--eeecCCCccccCCccCC
Confidence            5678999999999999999999999999 59999999999999  886 999999  76654

>KOG0241|consensus

Probab=98.82  E-value=1.5e-09  Score=97.59  Aligned_cols=61  Identities=38%  Similarity=0.429  Sum_probs=53.3

Q ss_pred             CceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccccCCCcccccc
Q psy18052          6 SKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAKSPYEESLTS   72 (98)
Q Consensus         6 ~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~p~~~~~~~   72 (98)
                      -.+++|||+|++.|.+    |||||.|.|||||+..|++||  .|.|+||.|  ++++-+.|.+.|...
T Consensus      1642 h~t~v~r~vg~tefq~----gveld~p~gkndgs~gg~qyf--rc~p~~g~~vr~s~~~~~~~~~r~~~ 1704 (1714)
T KOG0241|consen 1642 HTTNVLRDVGFTEFQG----GVELDDPDGKNDGSAGGLQYF--RCLPNKGGGVRVSDGLHHPSQLRSKL 1704 (1714)
T ss_pred             cccceeeecchhhccC----cccccCCCCCcCccccceeEE--eecCCCCCcccchhhccCcHhhhhhh
Confidence            4578999999999877    999999999999999999999  999999999  777777776655544

>KOG4568|consensus

Probab=98.81  E-value=9.5e-10  Score=95.04  Aligned_cols=55  Identities=47%  Similarity=0.861  Sum_probs=52.4

Q ss_pred             CCCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee-cc
Q psy18052          3 AQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH-QS   59 (98)
Q Consensus         3 ~~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF-p~   59 (98)
                      ..++..|++||.|.+.++.|.|+|+|||+|.|++||++.+++||  .|++.+|.| |.
T Consensus       163 ~~gq~~~~~r~~~~t~fa~g~w~~~elde~~~~~d~sv~k~~~~--~~k~ky~~f~~v  218 (664)
T KOG4568|consen  163 VGGQKSGTLRYSGHTKFASGSWLGVELDEPVGKNDGSVGKVRYF--QCKPKYGKFAPV  218 (664)
T ss_pred             ecCcccchhhhhccccccCCcccchhcccccccccccccccccc--cCcchhcchhHH
Confidence            45899999999999999999999999999999999999999999  999999999 63

>KOG3556|consensus

Probab=98.63  E-value=3.5e-08  Score=84.48  Aligned_cols=54  Identities=28%  Similarity=0.369  Sum_probs=49.1

Q ss_pred             CCceEEEEEEeecCCCCCcEEEEEEcCCC-----CCCCcEECcEEEecccCcCCceee-ccc
Q psy18052          5 GSKTGVLRFKGTTQFAQGEWCGVELDEPI-----GKNDGKFSAGSTFIWLCALILGYH-QSH   60 (98)
Q Consensus         5 g~~~GtVRyiG~~~~~~g~wvGVELDep~-----GknDGs~~G~rYF~~~C~~~~GiF-p~~   60 (98)
                      ...+|+|||||..|...++|+|||+++..     +.+||+.+|.|||  +|-++..+| +++
T Consensus       251 ~~~ygvVrWIG~pP~~~~Vl~gve~edet~~~~~~~~dgs~~g~Rlf--tc~d~~a~Fv~~~  310 (724)
T KOG3556|consen  251 RRVYGVVRWIGEPPEASGVLYGVEFEDETSQWPSSNQDGSSSGDRLF--TCFDTNANFVMSG  310 (724)
T ss_pred             cccceeeEecccCCcccCceEeeeecCccccCccccccCcccCceee--eeccccceeeEcC
Confidence            36899999999999999999999999864     7799999999999  999999999 654

>PTZ00243 ABC transporter; Provisional

Probab=93.44  E-value=0.073  Score=50.19  Aligned_cols=44  Identities=30%  Similarity=0.302  Sum_probs=36.9

Q ss_pred             CCCCceEEEEEEeecC--CCCCcEEEEEEcCCC--------------CCCCcEECcEEEe
Q psy18052          3 AQGSKTGVLRFKGTTQ--FAQGEWCGVELDEPI--------------GKNDGKFSAGSTF   46 (98)
Q Consensus         3 ~~g~~~GtVRyiG~~~--~~~g~wvGVELDep~--------------GknDGs~~G~rYF   46 (98)
                      .++.-+|++||+|.+.  ..++.++||||.-|-              +-|||.+.|.+.|
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (1560)
T PTZ00243        135 LDASSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLF  194 (1560)
T ss_pred             ccccccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCcccccccccccccc
Confidence            3667899999999996  567899999999761              2489999999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	98
2cp6_A	172	Solution Structure Of The 2nd Cap-Gly Domain In Hum		4e-11
2e3h_A	90	Crystal Structure Of The Clip-170 Cap-Gly Domain 2		6e-11
2e4h_A	98	Solution Structure Of Cytoskeletal Protein In Compl		8e-11
2cp3_A	84	Solution Structure Of The 2nd Cap-Gly Domain In Hum		8e-11
2cp0_A	95	Solution Structure Of The 1st Cap-Gly Domain In Hum		9e-10
1whj_A	102	Solution Structure Of The 1st Cap-Gly Domain In Mou		2e-08
2cp5_A	141	Solution Structure Of The 1st Cap-Gly Domain In Hum		3e-08
2e3i_A	86	Crystal Structure Of The Clip-170 Cap-Gly Domain 1		8e-08
2cp7_A	84	Solution Structure Of The 1st Cap-Gly Domain In Mou		8e-08
3rdv_A	72	Structure Of The Slain2c-Clipcg1 Complex Length = 7		8e-08
2qk0_A	74	Structural Basis Of Microtubule Plus End Tracking B		8e-08
2cp2_A	95	Solution Structure Of The 1st Cap-Gly Domain In Hum		2e-07
2coz_A	122	Solution Structure Of The Cap-Gly Domain In Human C		7e-07
1whh_A	102	Solution Structure Of The 2nd Cap-Gly Domain In Mou		1e-06
2z0w_A	96	Crystal Structure Of The 2nd Cap-Gly Domain In Huma		2e-06
2cow_A	100	Solution Structure Of The Cap-Gly Domain In Human K		4e-06
1lpl_A	95	Structural Genomics Of Caenorhabditis Elegans: Cap-		1e-05
1tov_A	98	Structural Genomics Of Caenorhabditis Elegans: Cap-		1e-05
1whg_A	113	Solution Structure Of The Cap-Gly Domain In Mouse T		3e-04

>pdb|2CP6|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human Clip- 170RESTIN Length = 172

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 26/34 (76%), Positives = 30/34 (88%)
Query: 5  GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
          G+K GV+RF G T FA+GEWCGVELDEP+GKNDG
Sbjct: 49 GTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDG 82

>pdb|2E3H|A Chain A, Crystal Structure Of The Clip-170 Cap-Gly Domain 2 Length = 90

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 32/42 (76%)
Query: 5  GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
          G+K GV+RF G T FA+GEWCGVELDEP+GKNDG  +    F
Sbjct: 12 GTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYF 53

>pdb|2E4H|A Chain A, Solution Structure Of Cytoskeletal Protein In Complex With Tubulin Tail Length = 98

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 32/42 (76%)
Query: 5  GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
          G+K GV+RF G T FA+GEWCGVELDEP+GKNDG  +    F
Sbjct: 20 GTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYF 61

>pdb|2CP3|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human Clip- 115CYLN2 Length = 84

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 26/38 (68%), Positives = 32/38 (84%)
Query: 5  GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSA 42
          G+KTGV+R+ G T FA+GEWCGVELDEP+GKNDG  + 
Sbjct: 18 GTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAG 55

>pdb|2CP0|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human Clip- 170-Related Protein Clipr59 Length = 95

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 4  QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLC 50
           G KTG LRF GTT+FA G+W GVELDEP GKNDG  S G    ++C
Sbjct: 26 DGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDG--SVGGVRYFIC 70

>pdb|1WHJ|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Mouse 1700024k14rik Hypothetical Protein Length = 102

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 5  GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCA 51
          G K G LRF GTT+FA G+W G+ELDEP GKN+G  S G    + CA
Sbjct: 35 GQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNG--SVGRVQYFKCA 79

>pdb|2CP5|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human Clip- 170RESTIN Length = 141

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 27/35 (77%)
Query: 4   QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
            G+K G ++F G TQFA G+W G+ LDEPIGKNDG
Sbjct: 74  NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDG 108

>pdb|2E3I|A Chain A, Crystal Structure Of The Clip-170 Cap-Gly Domain 1 Length = 86

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 28/39 (71%)
Query: 4  QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSA 42
           G+K G ++F G TQFA G+W G+ LDEPIGKNDG  + 
Sbjct: 12 NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAG 50

>pdb|2CP7|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Mouse Clip- 170RESTIN Length = 84

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 28/39 (71%)
Query: 4  QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSA 42
           G+K G ++F G TQFA G+W G+ LDEPIGKNDG  + 
Sbjct: 17 NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAG 55

>pdb|3RDV|A Chain A, Structure Of The Slain2c-Clipcg1 Complex Length = 72

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 28/40 (70%)
Query: 3  AQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSA 42
            G+K G ++F G TQFA G+W G+ LDEPIGKNDG  + 
Sbjct: 11 VNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAG 50

>pdb|2QK0|A Chain A, Structural Basis Of Microtubule Plus End Tracking By Xmap215, Clip-170 And Eb1 Length = 74

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 28/40 (70%)
Query: 3  AQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSA 42
            G+K G ++F G TQFA G+W G+ LDEPIGKNDG  + 
Sbjct: 12 VNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAG 51

>pdb|2CP2|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human Clip- 115CYLN2 Length = 95

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/35 (60%), Positives = 27/35 (77%)
Query: 4  QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
           G K GV+++ G TQFA G+W GV LD+P+GKNDG
Sbjct: 28 NGVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDG 62

>pdb|2COZ|A Chain A, Solution Structure Of The Cap-Gly Domain In Human Centrosome-Associated Protein Cap350 Length = 122

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 7  KTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSA 42
          + G+LRFKG T FA+G W GVELD+P G N+G +  
Sbjct: 44 QPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDG 79

>pdb|1WHH|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Mouse Clip170-Related 59kda Protein Clipr-59 Length = 102

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 25/34 (73%)
Query: 5  GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
          G K G++RF G T FA G W G+ELD+P GK+DG
Sbjct: 36 GQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDG 69

>pdb|2Z0W|A Chain A, Crystal Structure Of The 2nd Cap-Gly Domain In Human Restin- Like Protein 2 Reveals A Swapped-Dimer Length = 96

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 25/34 (73%)
Query: 5  GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 38
          G + G +RF GTT FA G W G+EL++P GKNDG
Sbjct: 21 GQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDG 54

>pdb|2COW|A Chain A, Solution Structure Of The Cap-Gly Domain In Human Kinesin- Like Protein Kif13b Length = 100

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/36 (55%), Positives = 23/36 (63%)
Query: 7  KTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSA 42
          KTGV+R+ G   F +G W GVELD P GKNDG    
Sbjct: 36 KTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGG 71

>pdb|1LPL|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Cap-Gly Domain Of F53f4.3 Length = 95

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 1  MSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
          + AQ ++ G + + G T+F +G W GV+ DEP+GKNDG  +    F
Sbjct: 22 VGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYF 67

>pdb|1TOV|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Cap-Gly Domain Of F53f4.3 Length = 98

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 1  MSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSA 42
          + AQ ++ G + + G T+F +G W GV+ DEP+GKNDG  + 
Sbjct: 25 VGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAG 66

>pdb|1WHG|A Chain A, Solution Structure Of The Cap-Gly Domain In Mouse Tubulin Specific Chaperone B Length = 113

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 7  KTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTF 46
          + G + + G T F  G W GV  DEP+GKNDG  +    F
Sbjct: 49 RRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVNGKRYF 88

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	98
2e3i_A	86	Restin; CAP-Gly, cytoplasmic linker, tubulin bindi	2e-16
2cp5_A	141	Restin; microtubule binding, cytoskeleton associat	2e-16
2e3h_A	90	Restin; CAP-Gly, cytoplasmic linker, tubulin bindi	2e-16
2cp6_A	172	Restin; microtubule binding, cytoskeleton associat	3e-16
1whj_A	102	1700024K14RIK, riken cDNA 1700024K14; structural g	3e-16
2cp2_A	95	CLIP-115, KIAA0291; microtubule binding, cytoskele	4e-16
3rdv_A	72	CAP-Gly domain-containing linker protein 1; cytosk	4e-16
2z0w_A	96	CAP-Gly domain-containing linker protein 4; altern	4e-16
1whh_A	102	Clipr-59; microtubule binding, trans-golgi network	5e-16
2cp3_A	84	CLIP-115, KIAA0291; microtubule binding, cytoskele	6e-16
2cp0_A	95	Clipr-59 protein, clipr59; microtubule binding, cy	6e-16
1lpl_A	95	Hypothetical 25.4 kDa protein F53F4.3 in chromosom	6e-16
2coz_A	122	CAP350, centrosome-associated protein 350; microtu	8e-16
2cow_A	100	Kinesin-like protein KIF13B; microtubule binding,	1e-15
2coy_A	112	Dynactin-1; microtubule binding, cytoskeleton asso	2e-15
1txq_A	93	Dynactin 1; protein complex, structural protein/pr	2e-15
1whk_A	91	1700024K14RIK, riken cDNA 1700024K14; structural g	3e-15
1whg_A	113	Tubulin specific chaperone B; microtubule binding,	2e-13
1ixd_A	104	Cylindromatosis tumour-suppressor CYLD; structural	2e-12
1whl_A	95	Cylindromatosis tumor suppressor CYLD; deubiquitin	6e-09
1whm_A	92	Cylindromatosis tumor suppressor CYLD; deubiquitin	6e-09

>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 2.00A {Homo sapiens} SCOP: b.34.10.1 Length = 86

 Score = 66.6 bits (163), Expect = 2e-16
 Identities = 22/37 (59%), Positives = 27/37 (72%)

Query: 4  QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
           G+K G ++F G TQFA G+W G+ LDEPIGKNDG  
Sbjct: 12 NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSV 48

>2cp5_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 141

 Score = 68.1 bits (166), Expect = 2e-16
 Identities = 22/37 (59%), Positives = 27/37 (72%)

Query: 4   QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
            G+K G ++F G TQFA G+W G+ LDEPIGKNDG  
Sbjct: 74  NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSV 110

>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB: 2e4h_A Length = 90

 Score = 66.6 bits (163), Expect = 2e-16
 Identities = 26/37 (70%), Positives = 30/37 (81%)

Query: 4  QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
           G+K GV+RF G T FA+GEWCGVELDEP+GKNDG  
Sbjct: 11 GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAV 47

>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 172

 Score = 68.6 bits (167), Expect = 3e-16
 Identities = 26/37 (70%), Positives = 30/37 (81%)

Query: 4  QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
           G+K GV+RF G T FA+GEWCGVELDEP+GKNDG  
Sbjct: 48 GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAV 84

>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1 Length = 102

 Score = 66.7 bits (163), Expect = 3e-16
 Identities = 23/37 (62%), Positives = 27/37 (72%)

Query: 4  QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
           G K G LRF GTT+FA G+W G+ELDEP GKN+G  
Sbjct: 34 AGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSV 70

>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 PDB: 2cp7_A Length = 95

 Score = 66.3 bits (162), Expect = 4e-16
 Identities = 21/37 (56%), Positives = 27/37 (72%)

Query: 4  QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
           G K GV+++ G TQFA G+W GV LD+P+GKNDG  
Sbjct: 28 NGVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAV 64

>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A Length = 72

 Score = 65.7 bits (161), Expect = 4e-16
 Identities = 22/37 (59%), Positives = 27/37 (72%)

Query: 4  QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
           G+K G ++F G TQFA G+W G+ LDEPIGKNDG  
Sbjct: 12 NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSV 48

>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing, ANK repeat, protein binding, structural genomics, NPPSFA; 2.50A {Homo sapiens} Length = 96

 Score = 66.3 bits (162), Expect = 4e-16
 Identities = 20/36 (55%), Positives = 25/36 (69%)

Query: 5  GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
          G + G +RF GTT FA G W G+EL++P GKNDG  
Sbjct: 21 GQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSV 56

>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.34.10.1 Length = 102

 Score = 66.3 bits (162), Expect = 5e-16
 Identities = 20/36 (55%), Positives = 25/36 (69%)

Query: 5  GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
          G K G++RF G T FA G W G+ELD+P GK+DG  
Sbjct: 36 GQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSV 71

>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 84

 Score = 65.4 bits (160), Expect = 6e-16
 Identities = 26/37 (70%), Positives = 31/37 (83%)

Query: 4  QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
           G+KTGV+R+ G T FA+GEWCGVELDEP+GKNDG  
Sbjct: 17 GGTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAV 53

>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 95

 Score = 65.9 bits (161), Expect = 6e-16
 Identities = 26/37 (70%), Positives = 28/37 (75%)

Query: 4  QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
           G KTG LRF GTT+FA G+W GVELDEP GKNDG  
Sbjct: 26 DGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSV 62

>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A Length = 95

 Score = 65.9 bits (161), Expect = 6e-16
 Identities = 18/39 (46%), Positives = 26/39 (66%)

Query: 2  SAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
           AQ ++ G + + G T+F +G W GV+ DEP+GKNDG  
Sbjct: 23 GAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSV 61

>2coz_A CAP350, centrosome-associated protein 350; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 122

 Score = 66.1 bits (161), Expect = 8e-16
 Identities = 20/36 (55%), Positives = 26/36 (72%)

Query: 5  GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
            + G+LRFKG T FA+G W GVELD+P G N+G +
Sbjct: 42 NVQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTY 77

>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 100

 Score = 65.2 bits (159), Expect = 1e-15
 Identities = 20/36 (55%), Positives = 23/36 (63%)

Query: 5  GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
            KTGV+R+ G   F +G W GVELD P GKNDG  
Sbjct: 34 AHKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSI 69

>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 112

 Score = 65.2 bits (159), Expect = 2e-15
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 5  GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
              G + + G T FA G+W GV LDE  GKNDG  
Sbjct: 45 KGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTV 80

>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P Length = 93

 Score = 64.3 bits (157), Expect = 2e-15
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 5  GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
              G + + G T FA G+W GV LDE  GKNDG  
Sbjct: 24 KGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTV 59

>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1 Length = 91

 Score = 63.9 bits (156), Expect = 3e-15
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 5  GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
           ++   +R+ G T FA G W G+EL    GKNDG  
Sbjct: 24 SNEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAV 59

>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1 Length = 113

 Score = 60.3 bits (146), Expect = 2e-13
 Identities = 16/39 (41%), Positives = 20/39 (51%)

Query: 2  SAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
               + G + + G T F  G W GV  DEP+GKNDG  
Sbjct: 44 PDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSV 82

>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 104

 Score = 57.1 bits (138), Expect = 2e-12
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 2  SAQGSKTGVLRFKGTTQFAQGEWCGVELDEPI-GKNDGKF 40
                 GV+R+ G          G+EL++   G  DG F
Sbjct: 27 KENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTF 66

>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 95

 Score = 47.9 bits (114), Expect = 6e-09
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 6/42 (14%)

Query: 5  GSKTGVLRFKGT---TQFAQGEWCGVELDE---PIGKNDGKF 40
              GV+RF+G     +   G + GVEL E     G  DG +
Sbjct: 23 EKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVY 64

>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 92

 Score = 47.9 bits (113), Expect = 6e-09
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 2  SAQGSKTGVLRFKGT--TQFAQGEWCGVELDEPIGKNDGKF 40
            +  ++G + F      + + G + GV++D PIG  DG+F
Sbjct: 20 VGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRF 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	98
3rdv_A	72	CAP-Gly domain-containing linker protein 1; cytosk	99.92
2cp3_A	84	CLIP-115, KIAA0291; microtubule binding, cytoskele	99.92
2cp0_A	95	Clipr-59 protein, clipr59; microtubule binding, cy	99.92
2cp2_A	95	CLIP-115, KIAA0291; microtubule binding, cytoskele	99.91
2z0w_A	96	CAP-Gly domain-containing linker protein 4; altern	99.91
1txq_A	93	Dynactin 1; protein complex, structural protein/pr	99.91
1whh_A	102	Clipr-59; microtubule binding, trans-golgi network	99.91
2e3i_A	86	Restin; CAP-Gly, cytoplasmic linker, tubulin bindi	99.91
2e3h_A	90	Restin; CAP-Gly, cytoplasmic linker, tubulin bindi	99.91
1whj_A	102	1700024K14RIK, riken cDNA 1700024K14; structural g	99.91
4b6m_A	84	Tubulin-specific chaperone, putative; structural p	99.9
2coz_A	122	CAP350, centrosome-associated protein 350; microtu	99.9
1lpl_A	95	Hypothetical 25.4 kDa protein F53F4.3 in chromosom	99.9
1whk_A	91	1700024K14RIK, riken cDNA 1700024K14; structural g	99.9
2cow_A	100	Kinesin-like protein KIF13B; microtubule binding,	99.9
1whl_A	95	Cylindromatosis tumor suppressor CYLD; deubiquitin	99.9
2coy_A	112	Dynactin-1; microtubule binding, cytoskeleton asso	99.89
2cp5_A	141	Restin; microtubule binding, cytoskeleton associat	99.89
1whg_A	113	Tubulin specific chaperone B; microtubule binding,	99.89
1ixd_A	104	Cylindromatosis tumour-suppressor CYLD; structural	99.88
2cp6_A	172	Restin; microtubule binding, cytoskeleton associat	99.87
1whm_A	92	Cylindromatosis tumor suppressor CYLD; deubiquitin	99.83

>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A

Probab=99.92  E-value=2.2e-25  Score=143.83  Aligned_cols=58  Identities=45%  Similarity=0.853  Sum_probs=54.2

Q ss_pred             CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--cccccc
Q psy18052          4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAK   63 (98)
Q Consensus         4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~   63 (98)
                      .+..+|+|||+|++++.+|.|+|||||+|.|||||+++|+|||  +|+|+||+|  |++|++
T Consensus        12 ~g~~~G~VryvG~~~~~~g~w~GVeld~p~GkndGsv~G~rYF--~c~p~~G~Fv~~~kvsr   71 (72)
T 3rdv_A           12 NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYF--QCEPLKGIFTRPSKLTR   71 (72)
T ss_dssp             TTTEEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESC--CCSTTCEEEECGGGEEC
T ss_pred             CCCCEEEEEEeeeCCCCCceEEEEEECCCCCccCCEECCEEeC--ccCCCCEEEecHHHccc
Confidence            4567999999999999999999999999999999999999999  999999999  666765

>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.92  E-value=3.5e-25  Score=146.52  Aligned_cols=64  Identities=47%  Similarity=0.854  Sum_probs=58.3

Q ss_pred             CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccccCCCccc
Q psy18052          4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAKSPYEES   69 (98)
Q Consensus         4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~p~~~~   69 (98)
                      .+.++|+|||+|++++.++.|+|||||+|.|||||+++|+|||  +|+|+||+|  |.+|.+..+..+
T Consensus        17 ~g~~~GtVryvG~~~~~~G~wvGVelDep~GkndGsv~G~rYF--~c~~~~G~Fv~~~kv~~~~~~~~   82 (84)
T 2cp3_A           17 GGTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYF--QCPPKFGLFAPIHKVIRIGSGPS   82 (84)
T ss_dssp             TTTEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEESS--CCCTTTEEEEEGGGEEECCCSSC
T ss_pred             CCCCeEEEEEeccCCCCCCeEEEEEeCCCCCcCCCEECCEEee--ecCCCeEEEEcHHHeEEcccCCC
Confidence            3567999999999999999999999999999999999999999  999999999  566888776654

>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.92  E-value=4.1e-25  Score=149.20  Aligned_cols=65  Identities=48%  Similarity=0.767  Sum_probs=59.6

Q ss_pred             CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccccCCCcccc
Q psy18052          4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAKSPYEESL   70 (98)
Q Consensus         4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~p~~~~~   70 (98)
                      .+.++|+|||+|++++.+|.|+|||||+|.|||||+++|+|||  +|+++||+|  |.+|.+.++....
T Consensus        26 ~g~~~GtVryvG~v~~~~G~wvGVelDep~GKnDGsv~G~rYF--~C~~~~G~Fv~~~kv~~~~~~~~~   92 (95)
T 2cp0_A           26 DGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYF--ICPPKQGLFASVSKISKAVDASGP   92 (95)
T ss_dssp             TTTEEEEEEEEECCSSSCSCEEEEEESSSCCSBCSEETTEECC--CCSSSCEEEECGGGEEECSCCCSC
T ss_pred             CCCCeEEEEEecccCCCCCcEEEEEecCCCCcCCCEECCEEee--ecCCCcEEEEcHHHeecCCCCCCC
Confidence            4567999999999999999999999999999999999999999  999999999  6679988887543

>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 PDB: 2cp7_A

Probab=99.91  E-value=7.3e-25  Score=147.97  Aligned_cols=62  Identities=42%  Similarity=0.800  Sum_probs=58.1

Q ss_pred             CCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccccCCCcc
Q psy18052          5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAKSPYEE   68 (98)
Q Consensus         5 g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~p~~~   68 (98)
                      +.++|+|||+|++++.+|.|+|||||+|.|||||+++|+|||  +|+|+||+|  |.+|.+.|.+.
T Consensus        29 g~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF--~C~p~~G~Fvr~~kv~~~p~~~   92 (95)
T 2cp2_A           29 GVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYF--ECPALQGIFTRPSKLTRQPSGP   92 (95)
T ss_dssp             GSCEEEEEEEEECSSSCSEEEEEEESSSCSSBBSEETTEECC--CCCTTTEEEECGGGCCSSCCSS
T ss_pred             CceEEEEEEecccCCCCCEEEEEEecCCCCccCCEECCEEec--ccCCCeEEEEcHHHCccCCCCC
Confidence            467999999999999999999999999999999999999999  999999999  67799888764

>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing, ANK repeat, protein binding, structural genomics, NPPSFA; 2.50A {Homo sapiens}

Probab=99.91  E-value=1.1e-24  Score=147.32  Aligned_cols=62  Identities=39%  Similarity=0.696  Sum_probs=56.1

Q ss_pred             CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccccCCCc
Q psy18052          4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAKSPYE   67 (98)
Q Consensus         4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~p~~   67 (98)
                      .+.++|+|||+|++++.+|.|+|||||+|.|||||+++|+|||  +|+|+||+|  |.+|....+.
T Consensus        20 ~g~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF--~C~p~~G~Fv~~~~v~~~~~~   83 (96)
T 2z0w_A           20 VGQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYF--SCSPRYGIFAPPSRVQRVTDS   83 (96)
T ss_dssp             CCCCCEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESS--CCCTTSEEEECGGGCCCTTC-
T ss_pred             CCCcEEEEEEeccCCCCCCeEEEEEeCCCCCCCCCEECCEEee--ecCCCeEEEEcHHHceeccch
Confidence            4678999999999999999999999999999999999999999  999999999  5667765554

>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P

Probab=99.91  E-value=1e-24  Score=146.52  Aligned_cols=64  Identities=36%  Similarity=0.533  Sum_probs=54.7

Q ss_pred             CceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccccCCCccccc
Q psy18052          6 SKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAKSPYEESLT   71 (98)
Q Consensus         6 ~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~p~~~~~~   71 (98)
                      .++|+|||+|++++.+|.|+|||||+|.|||||+++|+|||  +|+++||+|  |.+|....+...++
T Consensus        25 ~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF--~C~~~~G~Fvr~~~v~~~~~~~~~~   90 (93)
T 1txq_A           25 GHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYF--TCDEGHGIFVRQSQIQVFEDGADTT   90 (93)
T ss_dssp             CCEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESC--CCCTTCEEEECGGGEEECC------
T ss_pred             CeEEEEEEeeecCCCCCcEEEEEeCCCCCCCCCEECCEEee--ecCCCeEEEEcHHHeEEccCCCCCC
Confidence            58999999999999999999999999999999999999999  999999999  66687766654444

>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.34.10.1

Probab=99.91  E-value=1.5e-24  Score=148.25  Aligned_cols=64  Identities=41%  Similarity=0.676  Sum_probs=57.7

Q ss_pred             CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccccCCCccc
Q psy18052          4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAKSPYEES   69 (98)
Q Consensus         4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~p~~~~   69 (98)
                      .+.++|+|||+|++++.+|.|+|||||+|.|||||+++|+|||  +|+|+||+|  |.+|.+..+..+
T Consensus        35 ~g~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF--~C~p~~GiFvr~~~v~~~~d~p~  100 (102)
T 1whh_A           35 AGQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYF--TCAPRHGVFAPASRIQRIGSGPS  100 (102)
T ss_dssp             TTTEEEEEEEEEECSSSSSEEEEEECSSSCCSSSSEETTEECS--CCCTTTEEEECGGGEEECCSCTT
T ss_pred             CCCcEEEEEEeeecCCCCCeEEEEEeCCCCCcCCCEECCEEee--ecCCCcEEEecHHHeEECCCCCC
Confidence            4568999999999999999999999999999999999999999  999999999  666877666543

>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 2.00A {Homo sapiens} SCOP: b.34.10.1

Probab=99.91  E-value=1.7e-24  Score=143.77  Aligned_cols=58  Identities=45%  Similarity=0.853  Sum_probs=53.8

Q ss_pred             CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--cccccc
Q psy18052          4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAK   63 (98)
Q Consensus         4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~   63 (98)
                      .+.++|+|||+|++++.+|.|+|||||+|.|||||+++|+|||  +|+|+||+|  |.+|..
T Consensus        12 ~g~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF--~c~~~~G~Fvr~~~v~~   71 (86)
T 2e3i_A           12 NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYF--QCEPLKGIFTRPSKLTR   71 (86)
T ss_dssp             TTTEEEEEEEEEECSSSSSEEEEEEESSSCSSBSSEETTEESS--CCSTTCEEEECGGGEES
T ss_pred             CCCcEEEEEEeeeCCCCCCcEEEEEeCCCCCccCCEECCEEee--ecCCCeEEEEcHHHccc
Confidence            3567999999999999999999999999999999999999999  999999999  666654

>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB: 2e4h_A

Probab=99.91  E-value=2.3e-24  Score=144.23  Aligned_cols=58  Identities=52%  Similarity=0.964  Sum_probs=53.6

Q ss_pred             CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--cccccc
Q psy18052          4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAK   63 (98)
Q Consensus         4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~   63 (98)
                      .+.++|+|||+|++++.+|.|+|||||+|.|||||+++|+|||  +|+|+||+|  |.+|+.
T Consensus        11 ~g~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF--~C~p~~G~Fv~~~kv~~   70 (90)
T 2e3h_A           11 GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYF--QCQPKYGLFAPVHKVTK   70 (90)
T ss_dssp             TTTEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEESC--CCCTTCEEEEEGGGEEE
T ss_pred             CCCCEEEEEEeccCCCCCCeEEEEEECCCCCCCCCEECCEEee--ecCCCcEEEEcHHHeEE
Confidence            4567999999999999999999999999999999999999999  999999999  556654

>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1

Probab=99.91  E-value=2.8e-24  Score=146.82  Aligned_cols=63  Identities=46%  Similarity=0.741  Sum_probs=58.1

Q ss_pred             CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccccCCCcc
Q psy18052          4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAKSPYEE   68 (98)
Q Consensus         4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~p~~~   68 (98)
                      .+.++|+|||+|++++.+|.|+|||||+|.|||||+++|+|||  +|+++||+|  |.+|.++++..
T Consensus        34 ~g~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF--~C~p~~G~Fv~~~kv~~~~~~~   98 (102)
T 1whj_A           34 AGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYF--KCAPKYGIFAPLSKISKLKDSG   98 (102)
T ss_dssp             TTTEEEEEEEEEECSSSCSEEEEEEESSSCCSBSSEETTEECC--CCCTTTEEEEEGGGEEESSSCC
T ss_pred             CCCCEEEEEEeeecCCCCCeEEEEEeCCCCCccCCEECCEEec--ccCCCeEEEEeHHHccccCCCC
Confidence            4568999999999999999999999999999999999999999  999999999  56788877763

>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}

Probab=99.90  E-value=3.4e-24  Score=142.19  Aligned_cols=58  Identities=34%  Similarity=0.684  Sum_probs=52.4

Q ss_pred             CCCceEEEEEEeecC-CCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--cccccc
Q psy18052          4 QGSKTGVLRFKGTTQ-FAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAK   63 (98)
Q Consensus         4 ~g~~~GtVRyiG~~~-~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~   63 (98)
                      ++.++|+|||+|+++ +++|.|+|||||+|.||||||++|+|||  +|+|+||+|  |.+|+.
T Consensus        16 ~~~~~G~VryvG~v~~~~~G~wvGVelDep~GkndGsv~G~rYF--~C~~~~G~Fvr~~~v~~   76 (84)
T 4b6m_A           16 PGDRLGSVRFVGRVASLKPGYWVGVEFDEPVGKGDGTVKGTRVF--QCQPNYGGFLRPDQVEV   76 (84)
T ss_dssp             TTTEEEEEEEEEECTTSCSSEEEEEEESSSCCSBSSEETTEESS--CCCTTSEEEECGGGEEE
T ss_pred             CCCeEEEEEEEecCCCCCCCEEEEEEECCCCCCcCCEECCEEEE--ecCCCeEEEecHHHeEE
Confidence            456899999999975 6889999999999999999999999999  999999999  666653

>2coz_A CAP350, centrosome-associated protein 350; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.90  E-value=3.4e-24  Score=150.46  Aligned_cols=65  Identities=37%  Similarity=0.646  Sum_probs=59.1

Q ss_pred             CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccccCCCcccc
Q psy18052          4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAKSPYEESL   70 (98)
Q Consensus         4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~p~~~~~   70 (98)
                      .+.++|+|||+|++++.+|.|+|||||+|.|||||+++|+|||  +|+++||+|  |.+|..+|+....
T Consensus        41 ~g~~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF--~C~p~~GiFVr~~kv~~~pe~~~~  107 (122)
T 2coz_A           41 GNVQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYF--ECKEKHGIFAPPQKISHIPENFDD  107 (122)
T ss_dssp             TTTEEEEEEEEEECSSSSSEEEEEEESSTTSSBCSEETTEECC--CCCSSCEEEECGGGEECCCTTCCS
T ss_pred             CCCcEEEEEEecccCCCCCeEEEEEeCCCCCccCCEECCEEee--ecCCCcEEEecHHHCccCCccccc
Confidence            3468999999999999999999999999999999999999999  999999999  6678888876433

>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A

Probab=99.90  E-value=3e-24  Score=144.75  Aligned_cols=60  Identities=33%  Similarity=0.622  Sum_probs=54.7

Q ss_pred             CceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccc--cCCCc
Q psy18052          6 SKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEA--KSPYE   67 (98)
Q Consensus         6 ~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~--~~p~~   67 (98)
                      .++|||||+|++++.+|.|+|||||+|.|||||+++|+|||  +|+|+||+|  |.+|.  ..|..
T Consensus        27 ~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF--~C~p~~G~Fvr~~~v~~gdfp~~   90 (95)
T 1lpl_A           27 ARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYF--DCDPKYGGFVRPVDVKVGDFPEL   90 (95)
T ss_dssp             CEEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEECS--CCCTTSEEEECGGGEEESCCCCC
T ss_pred             ceEEEEEEecccCCCCCEEEEEEccCCCCccCCEECCEEEe--EeCCCEEEEEcHHHceECCCCCC
Confidence            79999999999999999999999999999999999999999  999999999  56654  45554

>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1

Probab=99.90  E-value=2e-24  Score=144.83  Aligned_cols=60  Identities=32%  Similarity=0.534  Sum_probs=55.6

Q ss_pred             CceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccccCCCc
Q psy18052          6 SKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAKSPYE   67 (98)
Q Consensus         6 ~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~p~~   67 (98)
                      .++|+|||+|++++.++.|+|||||+|.|||||+++|+|||  +|+|+||+|  |.+|...+..
T Consensus        25 ~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF--~C~~~~G~Fvr~~~v~~~~~~   86 (91)
T 1whk_A           25 NEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYF--TCKPNYGVLVRPSRVTYRGIS   86 (91)
T ss_dssp             CCEEEECCCEECSSSSSEEEEEECSSSCSSCCSEETTEECC--CCSTTCCCEECGGGEECCCCC
T ss_pred             CeEEEEEEeeeCCCCCCeEEEEEeCCCCCcCCCEECCEEEe--ecCCCeEEEEchHHcEEcCCC
Confidence            68999999999999999999999999999999999999999  999999999  6667766544

>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.90  E-value=4.1e-24  Score=145.60  Aligned_cols=64  Identities=39%  Similarity=0.670  Sum_probs=58.3

Q ss_pred             CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccccCCCccc
Q psy18052          4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAKSPYEES   69 (98)
Q Consensus         4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~p~~~~   69 (98)
                      .+.++|+|||+|++++.++.|+|||||+|.|||||+++|+|||  +|+|+||+|  |.+|.+.++...
T Consensus        33 ~g~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF--~C~p~~GiFvr~~~v~~~~~~p~   98 (100)
T 2cow_A           33 GAHKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYF--RCNPGYGLLVRPSRVRRATSGPS   98 (100)
T ss_dssp             SSSCEEEEEEEECCSSSSSCEEEEECSSSCCSCSSEETTEECC--CSCTTCCEEECGGGCEECCCCSS
T ss_pred             CCCcEEEEEEeeeCCCCCCeEEEEEeCCCCCcCCCEECCEEee--ecCCCeEEEecHHHeeECCCCCC
Confidence            3568999999999999999999999999999999999999999  999999999  667887776643

>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.90  E-value=5e-24  Score=143.33  Aligned_cols=60  Identities=28%  Similarity=0.373  Sum_probs=54.0

Q ss_pred             CceEEEEEEeecC---CCCCcEEEEEEcCC---CCCCCcEECcEEEecccCcCCceee--ccccccCCCc
Q psy18052          6 SKTGVLRFKGTTQ---FAQGEWCGVELDEP---IGKNDGKFSAGSTFIWLCALILGYH--QSHEAKSPYE   67 (98)
Q Consensus         6 ~~~GtVRyiG~~~---~~~g~wvGVELDep---~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~p~~   67 (98)
                      .++|||||+|+++   +.+|.|+|||||+|   .|||||+++|+|||  +|+|+||+|  |.+|....++
T Consensus        24 ~~~GtVryvG~v~~~~~~~G~wvGVElDep~~~~GKnDGsv~G~rYF--~C~~~~G~Fv~~~~v~~~~~~   91 (95)
T 1whl_A           24 KFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLF--QCDEDCGVFVALDKLELIESG   91 (95)
T ss_dssp             EEEEEEEEECCCCSSSSCCCCCEEEEECSSSCSCCSSTTEETTEECC--CCCTTTEEEECGGGEEECCSC
T ss_pred             ceeEEEEEeCccCcccCCCceEEEEEeCCCcccCCCCCCEECCEEEe--ecCCCeEEEEcHHHeEEcCcC
Confidence            5899999999998   79999999999999   89999999999999  999999999  5667654443

>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.89  E-value=9.8e-24  Score=146.15  Aligned_cols=60  Identities=37%  Similarity=0.564  Sum_probs=55.8

Q ss_pred             CceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccccCCCc
Q psy18052          6 SKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAKSPYE   67 (98)
Q Consensus         6 ~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~p~~   67 (98)
                      .++|+|||+|++++.+|.|+|||||+|.|||||+++|+|||  +|+|+||+|  |.+|....++
T Consensus        46 g~~GtVRyvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF--~C~p~~GiFVr~~~v~~~~~~  107 (112)
T 2coy_A           46 GHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYF--TCDEGHGIFVRQSQIQVFEDS  107 (112)
T ss_dssp             CCEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEECS--CCCTTTEEEECGGGEEECCCC
T ss_pred             CeEEEEEEeeecCCCCCcEEEEEECCCCCCCCCEECCEEee--ecCCCeEEEEchHHeEEcCCC
Confidence            58999999999999999999999999999999999999999  999999999  6668776665

>2cp5_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.89  E-value=1.8e-23  Score=149.82  Aligned_cols=64  Identities=42%  Similarity=0.759  Sum_probs=58.5

Q ss_pred             CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccccCCCccc
Q psy18052          4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAKSPYEES   69 (98)
Q Consensus         4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~p~~~~   69 (98)
                      .+.++|+|||+|++++.+|.|+|||||+|.|||||+++|+|||  +|+++||+|  |.+|.+.++..+
T Consensus        74 ~G~~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF--~C~p~~GiFVrp~kv~~~~~~~~  139 (141)
T 2cp5_A           74 NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYF--QCEPLKGIFTRPSKLTRKVSGPS  139 (141)
T ss_dssp             TTSCEEEEEEEEECSSSSSEEEEEEESSSCCSCBSEETTEESS--CCCTTTEEEECGGGEESSCCCCS
T ss_pred             CCCcEEEEEEeeecCCCCCcEEEEEeCCCCCccCCEECCEEee--ecCCCcEEEechHHeeeccCCCC
Confidence            3567999999999999999999999999999999999999999  999999999  677888776643

>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1

Probab=99.89  E-value=2e-23  Score=144.63  Aligned_cols=59  Identities=36%  Similarity=0.625  Sum_probs=54.1

Q ss_pred             CceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccc--cCCC
Q psy18052          6 SKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEA--KSPY   66 (98)
Q Consensus         6 ~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~--~~p~   66 (98)
                      .++|||||+|++++.+|.|+|||||+|.|||||+++|+|||  +|+|+||+|  |.+|.  ..|.
T Consensus        48 ~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF--~C~p~~GiFvr~~~v~~gdfp~  110 (113)
T 1whg_A           48 LRRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVNGKRYF--ECQAKYGAFVKPSAVTVGDSGP  110 (113)
T ss_dssp             CEEEEEEEEEECSSSSSEEEEEEESSSCCSBBSEETTEECS--CCCTTTEEEECGGGEEEEECCS
T ss_pred             ceEEEEEEecccCCCCCEEEEEEecCCCCccCCEECCEEEe--eeCCCeEEEECHHHeEECCCCC
Confidence            79999999999999999999999999999999999999999  999999999  55553  4554

>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.88  E-value=2.5e-23  Score=142.42  Aligned_cols=57  Identities=30%  Similarity=0.387  Sum_probs=52.7

Q ss_pred             CCCceEEEEEEeecCCCCCcEEEEEE-cCCCCCCCcEECcEEEecccCcCCceee--ccccc
Q psy18052          4 QGSKTGVLRFKGTTQFAQGEWCGVEL-DEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEA   62 (98)
Q Consensus         4 ~g~~~GtVRyiG~~~~~~g~wvGVEL-Dep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~   62 (98)
                      .+.++|||||+|++++.+|.|+|||| |+|.|||||+++|+|||  +|+++||+|  |.+|.
T Consensus        29 ~~~~~GtVryvG~v~~~~G~wvGVEldDep~GKnDGsv~G~rYF--~C~p~~G~FVr~~~v~   88 (104)
T 1ixd_A           29 NPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYF--TCALKKALFVKLKSCR   88 (104)
T ss_dssp             SSCCCEEEEEEECCSSSCCCEEEEEESSCCTTCBSSEETTEECS--CCCTTCBEEEEGGGEE
T ss_pred             CCCcEEEEEEecccCCCCceEEEEEecCCCCCCCCCEECCEEee--ecCCCcEEEEcHHHce
Confidence            34789999999999999999999999 88999999999999999  999999999  55654

>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.87  E-value=2.4e-22  Score=147.94  Aligned_cols=57  Identities=51%  Similarity=0.962  Sum_probs=53.1

Q ss_pred             CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccc
Q psy18052          4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEA   62 (98)
Q Consensus         4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~   62 (98)
                      .+.++|+|||+|++++.+|.|+|||||+|.|||||+++|+|||  +|+|+||+|  |.+|.
T Consensus        48 ~g~~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF--~C~p~~GiFVr~~kV~  106 (172)
T 2cp6_A           48 GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYF--QCQPKYGLFAPVHKVT  106 (172)
T ss_dssp             TTTEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEECC--CCCTTTEEEEEGGGCE
T ss_pred             CCCceEEEEEeCcCCCCCCcEEEEEecCCCCccCCEECCEEee--eeCCCeEEEechHHeE
Confidence            4568999999999999999999999999999999999999999  999999999  55564

>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.83  E-value=1e-20  Score=127.39  Aligned_cols=54  Identities=22%  Similarity=0.353  Sum_probs=49.2

Q ss_pred             CceEEEEEEeecCCC--CCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee-ccc
Q psy18052          6 SKTGVLRFKGTTQFA--QGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH-QSH   60 (98)
Q Consensus         6 ~~~GtVRyiG~~~~~--~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF-p~~   60 (98)
                      .++|||||+|+++..  ++.|+|||||+|.|||||+++|+||| ..|+++||+| |..
T Consensus        24 ~rrGtVrfvG~~~~~~~~G~wVGVelDEP~GknDGsv~G~ryF-~~c~~~~g~fV~~~   80 (92)
T 1whm_A           24 IESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLC-SFACVESTILLHIN   80 (92)
T ss_dssp             EEEEEEEEEECCTTCTTTCCEEEEEESSSCCCCCSEETTEESC-SSCCTTTEEEEEGG
T ss_pred             eeeEEEEEEecCCCcCCCCeEEEEEcCCCCCCCCCeECCEEec-cccCCCcceEcccc
Confidence            589999999999864  68999999999999999999999999 4799999999 543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	98
d1whha_	102	b.34.10.1 (A:) CLIP170-related 59kda protein CLIPR	9e-15
d1tova_	98	b.34.10.1 (A:) Cytoskeleton-associated protein F53	1e-14
d2coza1	109	b.34.10.1 (A:8-116) Centrosome-associated protein	3e-14
d2cp6a1	160	b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [	4e-14
d2cp0a1	83	b.34.10.1 (A:7-89) CLIP170-related 59kda protein C	5e-14
d2e3ha1	71	b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapien	7e-14
d2cowa1	88	b.34.10.1 (A:7-94) Kinesin-like protein kif13b {Hu	9e-14
d1whja_	102	b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse	9e-14
d2e3ia1	71	b.34.10.1 (A:58-128) Restin {Human (Homo sapiens)	1e-13
d1whka_	91	b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse	1e-12
d2hqha1	72	b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapien	5e-12
d1whga_	113	b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1	5e-12
d1whma_	92	b.34.10.1 (A:) Cylindromatosis tumour-suppressor C	7e-12
d1ixda_	104	b.34.10.1 (A:) Cylindromatosis tumour-suppressor C	2e-10
d1whla_	95	b.34.10.1 (A:) Cylindromatosis tumour-suppressor C	1e-07

>d1whha_ b.34.10.1 (A:) CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.7 bits (150), Expect = 9e-15
 Identities = 20/36 (55%), Positives = 25/36 (69%)

Query: 5  GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
          G K G++RF G T FA G W G+ELD+P GK+DG  
Sbjct: 36 GQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSV 71

>d1tova_ b.34.10.1 (A:) Cytoskeleton-associated protein F53F4.3 {Caenorhabditis elegans [TaxId: 6239]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cytoskeleton-associated protein F53F4.3
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 61.4 bits (149), Expect = 1e-14
 Identities = 18/39 (46%), Positives = 26/39 (66%)

Query: 2  SAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
           AQ ++ G + + G T+F +G W GV+ DEP+GKNDG  
Sbjct: 26 GAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSV 64

>d2coza1 b.34.10.1 (A:8-116) Centrosome-associated protein 350 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Centrosome-associated protein 350
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (147), Expect = 3e-14
 Identities = 20/36 (55%), Positives = 26/36 (72%)

Query: 5  GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
            + G+LRFKG T FA+G W GVELD+P G N+G +
Sbjct: 35 NVQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTY 70

>d2cp6a1 b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [TaxId: 9606]} Length = 160

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (149), Expect = 4e-14
 Identities = 26/37 (70%), Positives = 30/37 (81%)

Query: 4  QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
           G+K GV+RF G T FA+GEWCGVELDEP+GKNDG  
Sbjct: 41 GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAV 77

>d2cp0a1 b.34.10.1 (A:7-89) CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik) {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (144), Expect = 5e-14
 Identities = 26/37 (70%), Positives = 28/37 (75%)

Query: 4  QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
           G KTG LRF GTT+FA G+W GVELDEP GKNDG  
Sbjct: 20 DGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSV 56

>d2e3ha1 b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP-115
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (143), Expect = 7e-14
 Identities = 26/37 (70%), Positives = 30/37 (81%)

Query: 4  QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
           G+K GV+RF G T FA+GEWCGVELDEP+GKNDG  
Sbjct: 10 GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAV 46

>d2cowa1 b.34.10.1 (A:7-94) Kinesin-like protein kif13b {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Kinesin-like protein kif13b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (143), Expect = 9e-14
 Identities = 20/37 (54%), Positives = 23/37 (62%)

Query: 4  QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
             KTGV+R+ G   F +G W GVELD P GKNDG  
Sbjct: 27 GAHKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSI 63

>d1whja_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin-like protein 2, Rsnl2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.5 bits (144), Expect = 9e-14
 Identities = 23/37 (62%), Positives = 27/37 (72%)

Query: 4  QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
           G K G LRF GTT+FA G+W G+ELDEP GKN+G  
Sbjct: 34 AGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSV 70

>d2e3ia1 b.34.10.1 (A:58-128) Restin {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (141), Expect = 1e-13
 Identities = 22/37 (59%), Positives = 28/37 (75%)

Query: 5  GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFS 41
          G+K G ++F G TQFA G+W G+ LDEPIGKNDG  +
Sbjct: 11 GNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVA 47

>d1whka_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 91

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin-like protein 2, Rsnl2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.3 bits (136), Expect = 1e-12
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 5  GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
           ++   +R+ G T FA G W G+EL    GKNDG  
Sbjct: 24 SNEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAV 59

>d2hqha1 b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Dynactin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (130), Expect = 5e-12
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 5  GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
              G + + G T FA G+W GV LDE  GKNDG  
Sbjct: 13 KGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTV 48

>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 113

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Tubulin-specific chaperone B (SKAP1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.3 bits (133), Expect = 5e-12
 Identities = 16/37 (43%), Positives = 20/37 (54%)

Query: 4  QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKF 40
             + G + + G T F  G W GV  DEP+GKNDG  
Sbjct: 46 HSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSV 82

>d1whma_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (130), Expect = 7e-12
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 2  SAQGSKTGVLRFKGT--TQFAQGEWCGVELDEPIGKNDGKF 40
            +  ++G + F      + + G + GV++D PIG  DG+F
Sbjct: 20 VGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRF 60

>d1ixda_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (121), Expect = 2e-10
 Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 4  QGSKTGVLRFKGTTQFAQGEWCGVEL-DEPIGKNDGKF 40
               GV+R+ G          G+EL DE  G  DG F
Sbjct: 29 NPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTF 66

>d1whla_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (102), Expect = 1e-07
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 2  SAQGSKTGVLRFKGTTQFAQ---GEWCGVELDE---PIGKNDGKF 40
          S +    GV+RF+G     +   G + GVEL E     G  DG +
Sbjct: 20 SGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVY 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	98
d2cp0a1	83	CLIP170-related 59kda protein CLIPR-59 (1500005P14	99.92
d2e3ia1	71	Restin {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2e3ha1	71	CLIP-115 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2hqha1	72	Dynactin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1whja_	102	Restin-like protein 2, Rsnl2 {Mouse (Mus musculus)	99.91
d2coza1	109	Centrosome-associated protein 350 {Human (Homo sap	99.91
d1whha_	102	CLIP170-related 59kda protein CLIPR-59 (1500005P14	99.9
d2cowa1	88	Kinesin-like protein kif13b {Human (Homo sapiens)	99.9
d1whka_	91	Restin-like protein 2, Rsnl2 {Mouse (Mus musculus)	99.9
d2cp6a1	160	Restin {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1whga_	113	Tubulin-specific chaperone B (SKAP1) {Mouse (Mus m	99.89
d1tova_	98	Cytoskeleton-associated protein F53F4.3 {Caenorhab	99.88
d1whla_	95	Cylindromatosis tumour-suppressor Cyld {Human (Hom	99.86
d1ixda_	104	Cylindromatosis tumour-suppressor Cyld {Human (Hom	99.85
d1whma_	92	Cylindromatosis tumour-suppressor Cyld {Human (Hom	99.83

>d2cp0a1 b.34.10.1 (A:7-89) CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9.7e-26  Score=147.52  Aligned_cols=62  Identities=50%  Similarity=0.813  Sum_probs=57.0

Q ss_pred             CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccccCCCc
Q psy18052          4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAKSPYE   67 (98)
Q Consensus         4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~p~~   67 (98)
                      .+..+|+|||+|++++.++.|+|||||+|.|+|||+++|+|||  +|+|+||+|  |.+|++..|+
T Consensus        20 ~~~~~G~vryvG~~~~~~g~~vGVElD~p~GkndGt~~G~rYF--~C~~~~G~Fv~~~~v~~~~ds   83 (83)
T d2cp0a1          20 DGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYF--ICPPKQGLFASVSKISKAVDA   83 (83)
T ss_dssp             TTTEEEEEEEEECCSSSCSCEEEEEESSSCCSBCSEETTEECC--CCSSSCEEEECGGGEEECSCC
T ss_pred             CCCceEEEEEeeecCCCCCcEEEEEECCCCCCCCCEECCEEEe--ecCCCceEEcCHHHccccCCC
Confidence            4567899999999999999999999999999999999999999  999999999  5568887664

>d2e3ia1 b.34.10.1 (A:58-128) Restin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.5e-25  Score=143.04  Aligned_cols=58  Identities=45%  Similarity=0.853  Sum_probs=53.9

Q ss_pred             CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--cccccc
Q psy18052          4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAK   63 (98)
Q Consensus         4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~   63 (98)
                      .+...|+|||+|++++.++.|+|||||+|.|+|||+++|+|||  +|+|+||+|  |++|++
T Consensus        10 ~~~~~G~vryvG~~~~~~g~~vGVEld~p~Gk~dGt~~G~~YF--~c~~~~G~Fv~~~~v~k   69 (71)
T d2e3ia1          10 NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYF--QCEPLKGIFTRPSKLTR   69 (71)
T ss_dssp             TTTEEEEEEEEEECSSSSSEEEEEEESSSCSSBSSEETTEESS--CCSTTCEEEECGGGEES
T ss_pred             CCCcEEEEEEEeecCCCCCcEEEEEECCCCCCCCCEECCEEEE--ecCCCcEEEeCHHHEEe
Confidence            4667899999999999999999999999999999999999999  999999999  555765

>d2e3ha1 b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP-115
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.4e-25  Score=141.18  Aligned_cols=58  Identities=52%  Similarity=0.972  Sum_probs=53.6

Q ss_pred             CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee-c-ccccc
Q psy18052          4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH-Q-SHEAK   63 (98)
Q Consensus         4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF-p-~~v~~   63 (98)
                      .+...|+|||+|++++.++.|+|||||+|.|+|||+++|+|||  +|+|+||+| | .+|.+
T Consensus        10 ~~~~~G~vryvG~~~~~~g~~~GVeld~~~Gk~dG~~~G~~YF--~c~~~~G~Fv~~~kv~~   69 (71)
T d2e3ha1          10 GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYF--QCQPKYGLFAPVHKVTK   69 (71)
T ss_dssp             TTTEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEESC--CCCTTCEEEEEGGGEEE
T ss_pred             CCCceEEEEEecccCCCCCCEEEEEECCCCCCCCCEECCEEEE--ecCCCCEEEeCHHHcEE
Confidence            4567999999999999999999999999999999999999999  999999999 5 45765

>d2hqha1 b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Dynactin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.4e-25  Score=140.73  Aligned_cols=56  Identities=39%  Similarity=0.643  Sum_probs=51.9

Q ss_pred             CCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccc
Q psy18052          5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEA   62 (98)
Q Consensus         5 g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~   62 (98)
                      ...+|+|||+|++++.++.|+|||||+|.|+|||+++|+|||  +|+|+||+|  |.+|+
T Consensus        13 ~~~~G~vryvG~~~~~~g~~vGVeldep~GkndGt~~G~~YF--~C~~~~G~Fv~~~~v~   70 (72)
T d2hqha1          13 KGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYF--TCDEGHGIFVRQSQIQ   70 (72)
T ss_dssp             TCCEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESS--CCCTTTEEEECGGGEE
T ss_pred             CCEEEEEEEecccCCCCCcEEEEEEccCCCCCCCEECCEEEE--ecCCCcEEEechHHEE
Confidence            457899999999999999999999999999999999999999  999999999  45564

>d1whja_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin-like protein 2, Rsnl2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=8.1e-25  Score=147.74  Aligned_cols=65  Identities=45%  Similarity=0.709  Sum_probs=58.0

Q ss_pred             CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccccCCCcccc
Q psy18052          4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAKSPYEESL   70 (98)
Q Consensus         4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~p~~~~~   70 (98)
                      .+.+.|+|||+|++++.+++|+|||||+|.|+|||+++|+|||  +|+|+||+|  |.+|..+.+...+
T Consensus        34 ~~~~~G~VryvG~~~~~~g~~vGVeldep~GkndGt~~G~~YF--~C~~~~GiFv~~~~v~~~~~~~ps  100 (102)
T d1whja_          34 AGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYF--KCAPKYGIFAPLSKISKLKDSGPS  100 (102)
T ss_dssp             TTTEEEEEEEEEECSSSCSEEEEEEESSSCCSBSSEETTEECC--CCCTTTEEEEEGGGEEESSSCCCS
T ss_pred             CCCCeEEEEEeeecCCCCCcEEEEEECCCCCCCCCEECCEEEe--ecCCCcEEEecHHHeeEcCCCCCC
Confidence            4567899999999999999999999999999999999999999  999999999  4568877665443

>d2coza1 b.34.10.1 (A:8-116) Centrosome-associated protein 350 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Centrosome-associated protein 350
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.4e-24  Score=148.22  Aligned_cols=63  Identities=38%  Similarity=0.685  Sum_probs=57.4

Q ss_pred             CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccccCCCcc
Q psy18052          4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAKSPYEE   68 (98)
Q Consensus         4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~p~~~   68 (98)
                      .+.++|+|||+|++++.+|.|+|||||+|.|+|||+++|+|||  +|+|+||+|  |.+|++.|+..
T Consensus        34 ~~~~~G~vryiG~~~~~~g~~vGVElDep~GkndGtv~G~~YF--~C~~~~GiFv~~~~v~~~~~~~   98 (109)
T d2coza1          34 GNVQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYF--ECKEKHGIFAPPQKISHIPENF   98 (109)
T ss_dssp             TTTEEEEEEEEEECSSSSSEEEEEEESSTTSSBCSEETTEECC--CCCSSCEEEECGGGEECCCTTC
T ss_pred             CCCeeEEEEEEeecCCCCCcEEEEEecCCCCCCCCEECCEEEE--ecCCCcEEEeCHHHcEecCCCc
Confidence            4567899999999999999999999999999999999999999  999999999  56688777653

>d1whha_ b.34.10.1 (A:) CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=2.3e-24  Score=145.57  Aligned_cols=64  Identities=41%  Similarity=0.676  Sum_probs=57.5

Q ss_pred             CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee-c-cccccCCCccc
Q psy18052          4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH-Q-SHEAKSPYEES   69 (98)
Q Consensus         4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF-p-~~v~~~p~~~~   69 (98)
                      .+.+.|+|||+|++++.+++|+|||||+|.|+|||+++|+|||  +|+|+||+| | .+|.+..+..+
T Consensus        35 ~~~~~G~vryvG~~~~~~g~~~GVEld~p~GkndGt~~G~rYF--~C~p~~GiFv~~~~v~~~~d~p~  100 (102)
T d1whha_          35 AGQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYF--TCAPRHGVFAPASRIQRIGSGPS  100 (102)
T ss_dssp             TTTEEEEEEEEEECSSSSSEEEEEECSSSCCSSSSEETTEECS--CCCTTTEEEECGGGEEECCSCTT
T ss_pred             CCCceEEEEEecccCCCCCeEEEEEeCCCCCCCCCEECCEEEE--ecCCCcEEEeCHHHceECCCCCC
Confidence            4567899999999999999999999999999999999999999  999999999 5 55877766543

>d2cowa1 b.34.10.1 (A:7-94) Kinesin-like protein kif13b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Kinesin-like protein kif13b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.6e-24  Score=142.18  Aligned_cols=59  Identities=41%  Similarity=0.736  Sum_probs=53.9

Q ss_pred             CCCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee-c-ccccc
Q psy18052          3 AQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH-Q-SHEAK   63 (98)
Q Consensus         3 ~~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF-p-~~v~~   63 (98)
                      ..+.+.|+|||+|++++.+++|+|||||+|.|+|||+++|+|||  +|+++||+| | .+|.+
T Consensus        26 V~~~~~G~vryiG~~~~~~g~~vGVeld~p~GkndG~~~G~~YF--~c~~~~G~Fv~~~~v~~   86 (88)
T d2cowa1          26 VGAHKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYF--RCNPGYGLLVRPSRVRR   86 (88)
T ss_dssp             CSSSCEEEEEEEECCSSSSSCEEEEECSSSCCSCSSEETTEECC--CSCTTCCEEECGGGCEE
T ss_pred             ECCCcEEEEEEeeecCCCCCcEEEEEeCCCCCCCCCEECCEEEE--ecCCCcEEEecHHHcEE
Confidence            34667899999999999999999999999999999999999999  999999999 4 55765

>d1whka_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin-like protein 2, Rsnl2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=2.3e-24  Score=143.18  Aligned_cols=61  Identities=31%  Similarity=0.528  Sum_probs=55.3

Q ss_pred             CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccccCCC
Q psy18052          4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAKSPY   66 (98)
Q Consensus         4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~p~   66 (98)
                      .++..|+|||+|++++.++.|+|||||+|.|+|||+++|+|||  +|+|+||+|  |.+|+..++
T Consensus        23 ~~~~~G~vryvG~~~~~~g~~vGVElD~p~GkndGtv~G~~YF--~C~~~~G~Fv~~~~v~~~~~   85 (91)
T d1whka_          23 SSNEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYF--TCKPNYGVLVRPSRVTYRGI   85 (91)
T ss_dssp             SSCCEEEECCCEECSSSSSEEEEEECSSSCSSCCSEETTEECC--CCSTTCCCEECGGGEECCCC
T ss_pred             CCCeEEEEEEeeecCCCCCCEEEEEeCCCCCCCCCEECCEEEe--ecCCCceEEeCHHHeEEcCC
Confidence            3567899999999999999999999999999999999999999  999999999  566876543

>d2cp6a1 b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.9e-24  Score=152.01  Aligned_cols=59  Identities=51%  Similarity=0.938  Sum_probs=54.0

Q ss_pred             CCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccccC
Q psy18052          4 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAKS   64 (98)
Q Consensus         4 ~g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~   64 (98)
                      .+.+.|+|||+|++++.+|.|+|||||+|.|||||+++|+|||  +|+++||+|  +.+|.++
T Consensus        41 ~g~~~G~vr~iG~~~~~~G~wvGVELd~p~GKNdGsv~G~~YF--~c~~~~G~Fv~~s~v~~~  101 (160)
T d2cp6a1          41 GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYF--QCQPKYGLFAPVHKVTKI  101 (160)
T ss_dssp             TTTEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEECC--CCCTTTEEEEEGGGCEEC
T ss_pred             CCCCeEEEEEecccCCCCCCEEEEEeCCCCCCCCCEECCEEee--ecCCCceEEecHhHceEc
Confidence            4678999999999999999999999999999999999999999  999999999  4556543

>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Tubulin-specific chaperone B (SKAP1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=8.6e-24  Score=144.97  Aligned_cols=60  Identities=33%  Similarity=0.606  Sum_probs=54.0

Q ss_pred             CCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccccCCC
Q psy18052          5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEAKSPY   66 (98)
Q Consensus         5 g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~~~p~   66 (98)
                      ..++|+|||+|++++.++.|+|||||+|.|+|||+++|+|||  +|+|+||+|  |.+|+....
T Consensus        47 ~~r~G~vryvG~~~~~~g~~~GVelD~p~Gk~dG~~~G~rYF--~c~~~~G~fv~~~~v~~~~~  108 (113)
T d1whga_          47 SLRRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVNGKRYF--ECQAKYGAFVKPSAVTVGDS  108 (113)
T ss_dssp             SCEEEEEEEEEECSSSSSEEEEEEESSSCCSBBSEETTEECS--CCCTTTEEEECGGGEEEEEC
T ss_pred             CceEEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEE--ecCCCcEEEeCHHHeEECCC
Confidence            346899999999999999999999999999999999999999  999999999  556765433

>d1tova_ b.34.10.1 (A:) Cytoskeleton-associated protein F53F4.3 {Caenorhabditis elegans [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cytoskeleton-associated protein F53F4.3
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.88  E-value=2.7e-23  Score=139.48  Aligned_cols=56  Identities=34%  Similarity=0.646  Sum_probs=51.9

Q ss_pred             CCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECcEEEecccCcCCceee--ccccc
Q psy18052          5 GSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCALILGYH--QSHEA   62 (98)
Q Consensus         5 g~~~GtVRyiG~~~~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~~~~GiF--p~~v~   62 (98)
                      ..++|+|||+|++++.++.|+|||||+|.|+|||+++|+|||  +|+|+||+|  |.+|+
T Consensus        29 ~~~~G~vryiG~~~~~~g~~vGVelD~p~G~~dG~~~g~~YF--~c~~~~G~Fv~~~~v~   86 (98)
T d1tova_          29 MARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYF--DCDPKYGGFVRPVDVK   86 (98)
T ss_dssp             CCEEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEECS--CCCTTSEEEECGGGEE
T ss_pred             CceeEEEEEeeecCCCCceEEEEEeCCCCCCcCCEECCEEEE--EcCCCCEEEeChhheE
Confidence            357899999999999999999999999999999999999999  999999999  45554

>d1whla_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2e-22  Score=134.44  Aligned_cols=63  Identities=27%  Similarity=0.358  Sum_probs=52.1

Q ss_pred             CCCceEEEEEEeecCCC---CCcEEEEEEcC---CCCCCCcEECcEEEecccCcCCceee-c-cccccCCCcc
Q psy18052          4 QGSKTGVLRFKGTTQFA---QGEWCGVELDE---PIGKNDGKFSAGSTFIWLCALILGYH-Q-SHEAKSPYEE   68 (98)
Q Consensus         4 ~g~~~GtVRyiG~~~~~---~g~wvGVELDe---p~GknDGs~~G~rYF~~~C~~~~GiF-p-~~v~~~p~~~   68 (98)
                      ....+|+|||+|++++.   .++|+|||||+   +.|+|||+++|+|||  +|+|+||+| | .+|....+..
T Consensus        22 ~~~~~G~vryvG~~~~~~~~~G~~~GVeldd~~~~~Gk~dGt~~G~rYF--~C~~~~GiFv~~~kv~~~~~~p   92 (95)
T d1whla_          22 EEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLF--QCDEDCGVFVALDKLELIESGP   92 (95)
T ss_dssp             SCEEEEEEEEECCCCSSSSCCCCCEEEEECSSSCSCCSSTTEETTEECC--CCCTTTEEEECGGGEEECCSCS
T ss_pred             CCceeEEEEEeccCCCCCCCCceEEEEEecCCcCCCCccCCEECCEEEE--ecCCCcEEEecHHHeEEcccCC
Confidence            44578999999999875   48999999976   468899999999999  999999999 5 5566544443

>d1ixda_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=4.6e-22  Score=134.62  Aligned_cols=57  Identities=26%  Similarity=0.388  Sum_probs=50.9

Q ss_pred             CCCceEEEEEEeecCCCCCcEEEEEEcC-CCCCCCcEECcEEEecccCcCCceee-c-cccc
Q psy18052          4 QGSKTGVLRFKGTTQFAQGEWCGVELDE-PIGKNDGKFSAGSTFIWLCALILGYH-Q-SHEA   62 (98)
Q Consensus         4 ~g~~~GtVRyiG~~~~~~g~wvGVELDe-p~GknDGs~~G~rYF~~~C~~~~GiF-p-~~v~   62 (98)
                      .+.++|+|||+|++++.+++|+|||||+ +.|+|||+++|+|||  +|+++||+| | .++.
T Consensus        29 ~~~~~G~vryvG~~~~~~g~~~GVeldd~~~G~ndGt~~G~rYF--~C~~~~G~Fv~~~~~~   88 (104)
T d1ixda_          29 NPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYF--TCALKKALFVKLKSCR   88 (104)
T ss_dssp             SSCCCEEEEEEECCSSSCCCEEEEEESSCCTTCBSSEETTEECS--CCCTTCBEEEEGGGEE
T ss_pred             CCCcEEEEEEEecCCCCCCcEEEEEeCCCCCCCcCCEECCEEEE--ecCCCcEEEechHHCc
Confidence            3457899999999999999999999965 589999999999999  999999999 4 4554

>d1whma_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.4e-21  Score=128.75  Aligned_cols=62  Identities=21%  Similarity=0.291  Sum_probs=52.1

Q ss_pred             CCCceEEEEEEeecC--CCCCcEEEEEEcCCCCCCCcEECcEEEecccCc-CCceee-ccc-cccCCCc
Q psy18052          4 QGSKTGVLRFKGTTQ--FAQGEWCGVELDEPIGKNDGKFSAGSTFIWLCA-LILGYH-QSH-EAKSPYE   67 (98)
Q Consensus         4 ~g~~~GtVRyiG~~~--~~~g~wvGVELDep~GknDGs~~G~rYF~~~C~-~~~GiF-p~~-v~~~p~~   67 (98)
                      .+.++|+|||+|.++  +..+.|+|||||+|.|+|||+++|+|||  +|. ++||+| |.+ +..-++.
T Consensus        22 ~~~~~GtVryiG~lp~~~~~g~wvGVElDep~Gk~dGt~~G~r~f--~~~~~~~g~fv~~~~~~~~~s~   88 (92)
T d1whma_          22 ETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLC--SFACVESTILLHINDIIPESSG   88 (92)
T ss_dssp             TEEEEEEEEEEECCTTCTTTCCEEEEEESSSCCCCCSEETTEESC--SSCCTTTEEEEEGGGEEECCCC
T ss_pred             CCceEEEEEEeCCCCCcCCCceEEEEEeCCCCCCCCCeECCEEEE--EecCCCcEEEEehhhceEcCCC
Confidence            356799999999887  4578999999999999999999999999  998 579999 654 6444433