Psyllid ID: psy18087

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70----
Protein Sequence
MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQLTDGED
Secondary Structure (PSIPRED)
cHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEHHHHHcccccccHHHHHHHHcHHHHHHHHHHcccccccccEEEcHHHHHHHHccccccEEEccccccccc
Coil and Loop (DISEMBL)
MSIWIEsciketlppstelesnLRNGIVLAKLghyldpemvpeskiydadFAVYNRVAEKTemlshtqltdged
Flexible Loop (DISEMBL)
msiwiesciketlppstelESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTemlshtqltdged
Low Complexity Region (SEG)
MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQLTDGED
Disordered region (IsUnstruct)
**IWIESCIKET********SNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVA****************
Disordered Region (DISOPRED)
MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSH*Q******
Disordered Region (DISEMBL)
MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEML**********
Disordered Region (DISPRO)
MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQLTDG**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQLTDGED
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	74	2.2.26 [Sep-21-2011]
Q3UQ44	1575	Ras GTPase-activating-lik	yes	N/A	0.716	0.033	0.528	5e-11
Q13576	1575	Ras GTPase-activating-lik	yes	N/A	0.716	0.033	0.528	5e-11
P46940	1657	Ras GTPase-activating-lik	no	N/A	0.689	0.030	0.529	8e-11
Q9JKF1	1657	Ras GTPase-activating-lik	no	N/A	0.689	0.030	0.529	9e-11
Q86VI3	1631	Ras GTPase-activating-lik	no	N/A	0.635	0.028	0.574	2e-10

>sp|Q3UQ44|IQGA2_MOUSE Ras GTPase-activating-like protein IQGAP2 OS=Mus musculus GN=Iqgap2 PE=1 SV=2

 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 36/53 (67%)

Query: 4   WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNR 56
           W+E C+ E LPP+TELE  LRNG+ LAKL  +  P+MV E KIYD +   Y +
Sbjct: 50  WMEVCLVEELPPTTELEEGLRNGVYLAKLAKFFAPKMVSEKKIYDVEQTRYKK 102

Binds to activated CDC42 and RAC1 but does not seem to stimulate their GTPase activity. Associates with calmodulin.
Mus musculus (taxid: 10090)

>sp|Q13576|IQGA2_HUMAN Ras GTPase-activating-like protein IQGAP2 OS=Homo sapiens GN=IQGAP2 PE=1 SV=4

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 36/53 (67%)

Query: 4   WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNR 56
           W+E C+ E LPP+TELE  LRNG+ LAKL  +  P+MV E KIYD +   Y +
Sbjct: 50  WMEVCLVEELPPTTELEEGLRNGVYLAKLAKFFAPKMVSEKKIYDVEQTRYKK 102

Binds to activated CDC42 and RAC1 but does not seem to stimulate their GTPase activity. Associates with calmodulin.

Homo sapiens (taxid: 9606)

>sp|P46940|IQGA1_HUMAN Ras GTPase-activating-like protein IQGAP1 OS=Homo sapiens GN=IQGAP1 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 37/51 (72%)

Query: 4   WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVY 54
           W+E+C+ E LPP+TELE  LRNG+ LAKLG++  P++V   KIYD +   Y
Sbjct: 53  WMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRY 103

Binds to activated CDC42 but does not stimulate its GTPase activity. It associates with calmodulin. Could serve as an assembly scaffold for the organization of a multimolecular complex that would interface incoming signals to the reorganization of the actin cytoskeleton at the plasma membrane. May promote neurite outgrowth.

Homo sapiens (taxid: 9606)

>sp|Q9JKF1|IQGA1_MOUSE Ras GTPase-activating-like protein IQGAP1 OS=Mus musculus GN=Iqgap1 PE=1 SV=2

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 37/51 (72%)

Query: 4   WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVY 54
           W+E+C+ E LPP+TELE  LRNG+ LAKLG++  P++V   KIYD +   Y
Sbjct: 53  WMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRY 103

Binds to activated CDC42 but does not stimulate its GTPase activity. It associates with calmodulin. Could serve as an assembly scaffold for the organization of a multimolecular complex that would interface incoming signals to the reorganization of the actin cytoskeleton at the plasma membrane. May promote neurite outgrowth.

Mus musculus (taxid: 10090)

>sp|Q86VI3|IQGA3_HUMAN Ras GTPase-activating-like protein IQGAP3 OS=Homo sapiens GN=IQGAP3 PE=1 SV=2

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/47 (57%), Positives = 35/47 (74%)

Query: 4  WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDAD 50
          W+E+C+KE LP   ELE +LRNG++LAKLGH   P +VP  KIYD +
Sbjct: 43 WMEACLKEELPSPVELEESLRNGVLLAKLGHCFAPSVVPLKKIYDVE 89

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
443697139	1626	hypothetical protein CAPTEDRAFT_159655 [	0.702	0.031	0.596	2e-12
307213454	1605	Ras GTPase-activating-like protein IQGAP	0.743	0.034	0.527	3e-12
405957030	1627	Ras GTPase-activating-like protein IQGAP	0.689	0.031	0.607	3e-12
345494780	1618	PREDICTED: ras GTPase-activating-like pr	0.689	0.031	0.568	9e-12
332017840	1644	Ras GTPase-activating-like protein IQGAP	0.689	0.031	0.568	3e-11
340709109	1620	PREDICTED: LOW QUALITY PROTEIN: ras GTPa	0.743	0.033	0.545	4e-11
350419289	1626	PREDICTED: ras GTPase-activating-like pr	0.743	0.033	0.527	1e-10
380028521	1636	PREDICTED: LOW QUALITY PROTEIN: ras GTPa	0.743	0.033	0.527	1e-10
291232521	1655	PREDICTED: IQ motif containing GTPase ac	0.702	0.031	0.557	1e-10
4966251	1448	IQGAP [Hydra vulgaris]	0.702	0.035	0.538	1e-10

>gi|443697139|gb|ELT97684.1| hypothetical protein CAPTEDRAFT_159655 [Capitella teleta]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 41/52 (78%)

Query: 3  IWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVY 54
          +WIE+CIKETLP +TELE  LRNG+ LAKL HY++ E+VP  +I+D D + Y
Sbjct: 22 VWIEACIKETLPATTELEEGLRNGVALAKLAHYINSELVPLKRIFDRDESRY 73

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|307213454|gb|EFN88876.1| Ras GTPase-activating-like protein IQGAP1 [Harpegnathos saltator]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 45/55 (81%)

Query: 4  WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVA 58
          W+E+C++E+LPP+TELE NLRNG+ LAKLGH++ P+++P +KIYD++   Y  + 
Sbjct: 16 WMEACLRESLPPTTELEENLRNGVYLAKLGHFMAPDILPLNKIYDSEQRRYRVIG 70

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405957030|gb|EKC23268.1| Ras GTPase-activating-like protein IQGAP1 [Crassostrea gigas]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 4   WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVY 54
           WI++CI E LPP+TELE  LRNG+ LA+LGH+L P++VP  KIYD D + Y
Sbjct: 68  WIQACINEELPPTTELEEGLRNGVYLAQLGHFLAPQVVPLKKIYDKDQSRY 118

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|345494780|ref|XP_001603513.2| PREDICTED: ras GTPase-activating-like protein IQGAP1 [Nasonia vitripennis]

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 41/51 (80%)

Query: 4  WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVY 54
          W+E+C++E LPP+TELE NLRNG+ LAKLGH++ P+++P  KIYD +   Y
Sbjct: 35 WMEACLREKLPPTTELEENLRNGVYLAKLGHFIAPDILPYKKIYDPEQKRY 85

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017840|gb|EGI58500.1| Ras GTPase-activating-like protein IQGAP1 [Acromyrmex echinatior]

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 40/51 (78%)

Query: 4  WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVY 54
          W+E+C++E LPPS ELE NLRNG+ LAKLGH++ P ++P +KIYD +   Y
Sbjct: 45 WMEACLREPLPPSIELEENLRNGVYLAKLGHFMAPNILPVNKIYDTEQRRY 95

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709109|ref|XP_003393156.1| PREDICTED: LOW QUALITY PROTEIN: ras GTPase-activating-like protein IQGAP1-like [Bombus terrestris]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 41/55 (74%)

Query: 4   WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVA 58
           W+E+C++ETLPP+TELE NLRNG+ LAKL H++ PE +   KIYD++   Y  V 
Sbjct: 46  WMEACLRETLPPTTELEENLRNGVYLAKLAHFMAPESLSVHKIYDSEQKRYAAVG 100

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419289|ref|XP_003492132.1| PREDICTED: ras GTPase-activating-like protein IQGAP1-like [Bombus impatiens]

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVA 58
           W+E+C++ETLPP+TELE NLRNG+ LAK+ H++ PE +   KIYD++   Y  V 
Sbjct: 46  WMEACLRETLPPTTELEENLRNGVYLAKVAHFMAPESLSVHKIYDSEQKRYAAVG 100

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028521|ref|XP_003697947.1| PREDICTED: LOW QUALITY PROTEIN: ras GTPase-activating-like protein IQGAP1-like [Apis florea]

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 40/55 (72%)

Query: 4   WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVA 58
           W+E+C++ETLP +TELE NLRNG+ LAKL H++ PE +P  KIYD +   Y  + 
Sbjct: 46  WMEACLRETLPSTTELEENLRNGVYLAKLAHFMAPESLPIHKIYDPEQKRYTAIG 100

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291232521|ref|XP_002736212.1| PREDICTED: IQ motif containing GTPase activating protein 1-like [Saccoglossus kowalevskii]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/52 (55%), Positives = 38/52 (73%)

Query: 3   IWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVY 54
           +WIE CI E LPPSTELE  L+NG+ LAKL H+  P++VP  +I+D D + Y
Sbjct: 50  LWIEICINEKLPPSTELEEGLQNGVFLAKLSHFFAPKIVPLKRIFDKDQSRY 101

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|4966251|gb|AAD33755.2| IQGAP [Hydra vulgaris]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 36/52 (69%)

Query: 3  IWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVY 54
          IW+E CI E +PP+TELE  L NG++LAKL H+  P +VP  KI+D D   Y
Sbjct: 38 IWLEGCIHEEVPPTTELEQGLTNGVILAKLAHFFAPNVVPLRKIFDKDLTRY 89

Source: Hydra vulgaris

Species: Hydra vulgaris

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
UNIPROTKB|E1B946	1636	IQGAP3 "Uncharacterized protei	0.635	0.028	0.595	5.7e-10
UNIPROTKB|F6Y6X6	1471	IQGAP3 "Uncharacterized protei	0.635	0.031	0.595	6.4e-10
UNIPROTKB|D6R939	825	IQGAP2 "Ras GTPase-activating-	0.716	0.064	0.528	6.5e-10
UNIPROTKB|E2R3E7	1634	IQGAP3 "Uncharacterized protei	0.635	0.028	0.595	7.3e-10
ZFIN|ZDB-GENE-030131-2878	1680	iqgap2 "IQ motif containing GT	0.689	0.030	0.529	7.5e-10
UNIPROTKB|F1NY82	1663	IQGAP1 "Uncharacterized protei	0.689	0.030	0.529	1.2e-09
UNIPROTKB|F1MTR1	1548	IQGAP2 "Uncharacterized protei	0.716	0.034	0.528	1.4e-09
UNIPROTKB|F1PSQ0	1548	IQGAP2 "Uncharacterized protei	0.716	0.034	0.528	1.4e-09
UNIPROTKB|Q13576	1575	IQGAP2 "Ras GTPase-activating-	0.716	0.033	0.528	1.4e-09
MGI|MGI:2449975	1575	Iqgap2 "IQ motif containing GT	0.716	0.033	0.528	1.4e-09

UNIPROTKB|E1B946 IQGAP3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 158 (60.7 bits), Expect = 5.7e-10, P = 5.7e-10
 Identities = 28/47 (59%), Positives = 36/47 (76%)

Query:     4 WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDAD 50
             W+E+C+KE LP   ELE +LRNG++LAKLGH   P +VP  KIYDA+
Sbjct:    43 WMEACLKEELPSPVELEESLRNGVLLAKLGHCFAPSVVPLKKIYDAE 89

GO:0071310 "cellular response to organic substance" evidence=IEA

GO:0070371 "ERK1 and ERK2 cascade" evidence=IEA

GO:0033601 "positive regulation of mammary gland epithelial cell proliferation" evidence=IEA

GO:0017048 "Rho GTPase binding" evidence=IEA

GO:0016328 "lateral plasma membrane" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

GO:0008361 "regulation of cell size" evidence=IEA

GO:0007265 "Ras protein signal transduction" evidence=IEA

GO:0005911 "cell-cell junction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000187 "activation of MAPK activity" evidence=IEA

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=IEA

GO:0005099 "Ras GTPase activator activity" evidence=IEA

UNIPROTKB|F6Y6X6 IQGAP3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 157 (60.3 bits), Expect = 6.4e-10, P = 6.4e-10
 Identities = 28/47 (59%), Positives = 36/47 (76%)

Query:     4 WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDAD 50
             W+E+C+KE LP   ELE +LRNG++LAKLGH   P +VP  KIYDA+
Sbjct:    23 WMEACLKEELPSPVELEESLRNGVLLAKLGHCFAPAVVPLKKIYDAE 69

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

UNIPROTKB|D6R939 IQGAP2 "Ras GTPase-activating-like protein IQGAP2" [Homo sapiens (taxid:9606)]

 Score = 154 (59.3 bits), Expect = 6.5e-10, P = 6.5e-10
 Identities = 28/53 (52%), Positives = 36/53 (67%)

Query:     4 WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNR 56
             W+E C+ E LPP+TELE  LRNG+ LAKL  +  P+MV E KIYD +   Y +
Sbjct:    23 WMEVCLVEELPPTTELEEGLRNGVYLAKLAKFFAPKMVSEKKIYDVEQTRYKK 75

GO:0005902 "microvillus" evidence=IEA

UNIPROTKB|E2R3E7 IQGAP3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 157 (60.3 bits), Expect = 7.3e-10, P = 7.3e-10
 Identities = 28/47 (59%), Positives = 36/47 (76%)

Query:     4 WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDAD 50
             W+E+C+KE LP   ELE +LRNG++LAKLGH   P +VP  KIYDA+
Sbjct:    43 WMEACLKEELPSPVELEESLRNGVLLAKLGHCFAPAVVPLKKIYDAE 89

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005099 "Ras GTPase activator activity" evidence=IEA

ZFIN|ZDB-GENE-030131-2878 iqgap2 "IQ motif containing GTPase activating protein 2" [Danio rerio (taxid:7955)]

 Score = 157 (60.3 bits), Expect = 7.5e-10, P = 7.5e-10
 Identities = 27/51 (52%), Positives = 38/51 (74%)

Query:     4 WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVY 54
             W+E+C++E LPP+TELE+ LRNG+ L KL  +  P++V E KIYD D + Y
Sbjct:    62 WMEACLEEQLPPTTELENGLRNGVYLGKLAKFFAPQLVSEKKIYDRDQSWY 112

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005099 "Ras GTPase activator activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|F1NY82 IQGAP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 155 (59.6 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 27/51 (52%), Positives = 37/51 (72%)

Query:     4 WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVY 54
             W+E+C+ E LPP+TELE  LRNG+ LAKLG++  P++V   KIYD +   Y
Sbjct:    57 WMEACLNEELPPTTELEEGLRNGVYLAKLGNFFSPKVVSVKKIYDREQTRY 107

GO:0005099 "Ras GTPase activator activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0001817 "regulation of cytokine production" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005911 "cell-cell junction" evidence=IEA

GO:0016328 "lateral plasma membrane" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0031252 "cell leading edge" evidence=IEA

GO:0035305 "negative regulation of dephosphorylation" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0045860 "positive regulation of protein kinase activity" evidence=IEA

GO:0048365 "Rac GTPase binding" evidence=IEA

GO:0071277 "cellular response to calcium ion" evidence=IEA

UNIPROTKB|F1MTR1 IQGAP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 154 (59.3 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 28/53 (52%), Positives = 36/53 (67%)

Query:     4 WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNR 56
             W+E C+ E LPP+TELE  LRNG+ LAKL  +  P+MV E KIYD +   Y +
Sbjct:    23 WMEVCLVEELPPTTELEEGLRNGVYLAKLAKFFAPKMVSEKKIYDVEQTRYKK 75

GO:0005902 "microvillus" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005099 "Ras GTPase activator activity" evidence=IEA

UNIPROTKB|F1PSQ0 IQGAP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 154 (59.3 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 28/53 (52%), Positives = 36/53 (67%)

Query:     4 WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNR 56
             W+E C+ E LPP+TELE  LRNG+ LAKL  +  P+MV E KIYD +   Y +
Sbjct:    23 WMEVCLVEELPPTTELEEGLRNGVYLAKLAKFFAPKMVSEKKIYDVEQTRYKK 75

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005099 "Ras GTPase activator activity" evidence=IEA

UNIPROTKB|Q13576 IQGAP2 "Ras GTPase-activating-like protein IQGAP2" [Homo sapiens (taxid:9606)]

 Score = 154 (59.3 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 28/53 (52%), Positives = 36/53 (67%)

Query:     4 WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNR 56
             W+E C+ E LPP+TELE  LRNG+ LAKL  +  P+MV E KIYD +   Y +
Sbjct:    50 WMEVCLVEELPPTTELEEGLRNGVYLAKLAKFFAPKMVSEKKIYDVEQTRYKK 102

GO:0005099 "Ras GTPase activator activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

GO:0005874 "microtubule" evidence=IDA

GO:0003779 "actin binding" evidence=TAS

GO:0005095 "GTPase inhibitor activity" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0015629 "actin cytoskeleton" evidence=TAS

MGI|MGI:2449975 Iqgap2 "IQ motif containing GTPase activating protein 2" [Mus musculus (taxid:10090)]

 Score = 154 (59.3 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 28/53 (52%), Positives = 36/53 (67%)

Query:     4 WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNR 56
             W+E C+ E LPP+TELE  LRNG+ LAKL  +  P+MV E KIYD +   Y +
Sbjct:    50 WMEVCLVEELPPTTELEEGLRNGVYLAKLAKFFAPKMVSEKKIYDVEQTRYKK 102

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005099 "Ras GTPase activator activity" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005874 "microtubule" evidence=ISO

GO:0005902 "microvillus" evidence=IDA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3UQ44	IQGA2_MOUSE	No assigned EC number	0.5283	0.7162	0.0336	yes	N/A
Q13576	IQGA2_HUMAN	No assigned EC number	0.5283	0.7162	0.0336	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	74
pfam00307	104	pfam00307, CH, Calponin homology (CH) domain	5e-06
cd00014	107	cd00014, CH, Calponin homology domain; actin-bindi	1e-05
smart00033	101	smart00033, CH, Calponin homology domain	2e-05
COG5261	1054	COG5261, IQG1, Protein involved in regulation of c	4e-04

>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain

 Score = 40.3 bits (95), Expect = 5e-06
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 4  WIESCIKETLP-PSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADF-AVYN 55
          WI   + E    P T    +LR+G+ L  L + L P ++   K+    F  + N
Sbjct: 7  WINEVLGEYGGLPVTNFFEDLRDGLALCALLNKLRPGLIDLKKVNKNRFDKLEN 60

The CH domain is found in both cytoskeletal proteins and signal transduction proteins. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity. Most member proteins have from two to four copies of the CH domain, however some proteins such as calponin have only a single copy. Length = 104

>gnl|CDD|237981 cd00014, CH, Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity)

 Score = 39.2 bits (92), Expect = 1e-05
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 4  WIESCIKETLPP-STELESNLRNGIVLAKLGHYLDPEMVPESKIYD 48
          WI   + E  P       ++L++GI L KL + L P+++ + KI  
Sbjct: 9  WINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINP 54

The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav). Length = 107

>gnl|CDD|214479 smart00033, CH, Calponin homology domain

 Score = 38.5 bits (90), Expect = 2e-05
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 4  WIESCIKETLPPS-TELESNLRNGIVLAKLGHYLDPEMVPESKI 46
          W+ S + E   P  T   S+L++G+ L  L + L P +V + K+
Sbjct: 6  WVNSLLAEYDKPPVTNFSSDLKDGVALCALLNSLSPGLVDKKKV 49

Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p. Length = 101

>gnl|CDD|227586 COG5261, IQG1, Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]

 Score = 36.4 bits (84), Expect = 4e-04
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 3  IWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDAD 50
          IWIE  I+E LP     E +LRNG+ LAKL    +P++   + I+ AD
Sbjct: 51 IWIEEVIEEALPEL-CFEDSLRNGVFLAKLTQRFNPDLT--TVIFPAD 95

Length = 1054

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	74
KOG2046|consensus	193		99.67
KOG2128|consensus	1401		99.58
COG5199	178	SCP1 Calponin [Cytoskeleton]	99.44
cd00014	107	CH Calponin homology domain; actin-binding domain	99.29
COG5261	1054	IQG1 Protein involved in regulation of cellular mo	99.22
smart00033	103	CH Calponin homology domain. Actin binding domains	99.17
PF00307	108	CH: Calponin homology (CH) domain; InterPro: IPR00	99.04
KOG2996|consensus	865		97.82
PF11971	85	CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 T	97.68
KOG0532|consensus	722		97.59
KOG0046|consensus	627		96.87
KOG0046|consensus	627		95.51
PF06294	158	DUF1042: Domain of Unknown Function (DUF1042); Int	87.54

>KOG2046|consensus

Probab=99.67  E-value=2e-17  Score=117.48  Aligned_cols=58  Identities=26%  Similarity=0.457  Sum_probs=49.9

Q ss_pred             ChhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087          1 MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         1 ik~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      +++||+.++..+.+...+|+++|||||+||+|+|+|+|++++  +++        .|.|+|..||||.
T Consensus        30 l~~WI~~~~~~~~~~~~~f~~~LKDG~iLCkl~N~l~p~~~~--~~~--------~s~~~f~qmEnIs   87 (193)
T KOG2046|consen   30 LREWIENVVLTELPARGDFQDLLKDGVILCKLINKLYPGVVK--KIN--------ESKMAFVQMENIS   87 (193)
T ss_pred             HHHHHHHhhccCCCcccCHHHHHcchHHHHHHHHHhCcCccc--ccc--------cccccHHHHHHHH
Confidence            478999987777765569999999999999999999997774  555        7899999999984

>KOG2128|consensus

Probab=99.58  E-value=8e-16  Score=130.70  Aligned_cols=58  Identities=40%  Similarity=0.787  Sum_probs=48.5

Q ss_pred             ChhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCcccccccc
Q psy18087          1 MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHT   67 (74)
Q Consensus         1 ik~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~   67 (74)
                      +|.|||+|+|+.+||..+|++.|||||+||+|+|.|+|..         .+..|+..+++|||.|||
T Consensus        47 ~k~W~e~cl~edL~pttele~~LRNGV~LAkL~~~f~PD~---------~~~~~~~~~~~frHtdNi  104 (1401)
T KOG2128|consen   47 AKRWIEECLGEDLPPTTELEEGLRNGVYLAKLGQFFAPDL---------EQTIYKANDLHFRHTDNI  104 (1401)
T ss_pred             HHHHHHHHhcccCCCchHHHHHhhhhhHHHHHHhhcCCcc---------eeeeeecCCceeecchhH
Confidence            5899999999999999999999999999999999999943         345556666666666665

>COG5199 SCP1 Calponin [Cytoskeleton]

Probab=99.44  E-value=4.5e-14  Score=98.55  Aligned_cols=57  Identities=21%  Similarity=0.405  Sum_probs=50.8

Q ss_pred             ChhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087          1 MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         1 ik~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      ++.|||.++++++.|..+|.+.|||||+|||+.|.-.|+.           ++||+|+|||-.||||-
T Consensus        18 v~~Wie~~l~~k~~ppgdll~~lkdGv~lCril~ea~~~~-----------I~yKeSkmpFVQmenIs   74 (178)
T COG5199          18 VTLWIETVLGEKFEPPGDLLSLLKDGVRLCRILNEASPLD-----------IKYKESKMPFVQMENIS   74 (178)
T ss_pred             HHHHHHHHHHhhhCCcccHHHHHhcchHHHHHHhhcCccc-----------ceecccCCceeeHHHHH
Confidence            4689999999999877799999999999999888877654           57999999999999983

>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity)

Probab=99.29  E-value=1.6e-12  Score=80.09  Aligned_cols=42  Identities=29%  Similarity=0.603  Sum_probs=38.6

Q ss_pred             ChhHHHHHhccCCC-CchHHHHhhhhhHHHHHhhhhhCCCCcc
Q psy18087          1 MSIWIESCIKETLP-PSTELESNLRNGIVLAKLGHYLDPEMVP   42 (74)
Q Consensus         1 ik~WIe~vlge~l~-~~~~~~e~LkdGvvLckL~N~l~P~~v~   42 (74)
                      +.+||++++++..+ +..+|.+.|+||++||+|+|++.|+.++
T Consensus         6 l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~   48 (107)
T cd00014           6 LLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLID   48 (107)
T ss_pred             HHHHHHHHhccCCCccHHHHHHHHhchHHHHHHHHHHCccccc
Confidence            36899999999987 6779999999999999999999999886

The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).

>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]

Probab=99.22  E-value=5.1e-12  Score=104.90  Aligned_cols=54  Identities=39%  Similarity=0.708  Sum_probs=46.4

Q ss_pred             ChhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCccccccc
Q psy18087          1 MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRV   57 (74)
Q Consensus         1 ik~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~s   57 (74)
                      +|.|||+|+++++| ...|++.|||||+|++|.+.++|..+.  +|+.+++++|||+
T Consensus        49 aK~WIee~~~~~l~-~~~fe~slRnGV~La~l~q~f~pd~~~--~iF~~~~LQfrHt  102 (1054)
T COG5261          49 AKIWIEEVIEEALP-ELCFEDSLRNGVFLAKLTQRFNPDLTT--VIFPADKLQFRHT  102 (1054)
T ss_pred             HHHHHHHHhccCCc-hhhHHHHHhccchHHHHHHHhCCCcee--Eeeecccceeecc
Confidence            57899999999999 458999999999999999999999984  8887765555543

>smart00033 CH Calponin homology domain

Probab=99.17  E-value=9.6e-12  Score=75.81  Aligned_cols=41  Identities=37%  Similarity=0.596  Sum_probs=37.1

Q ss_pred             hhHHHHHhccCC-CCchHHHHhhhhhHHHHHhhhhhCCCCcc
Q psy18087          2 SIWIESCIKETL-PPSTELESNLRNGIVLAKLGHYLDPEMVP   42 (74)
Q Consensus         2 k~WIe~vlge~l-~~~~~~~e~LkdGvvLckL~N~l~P~~v~   42 (74)
                      .+|+.+++++.. .+.++|.+.|+||++||+|+|++.|+.++
T Consensus         6 ~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~   47 (103)
T smart00033        6 LRWVNSLLAEYGKPPVTNFSSDLSDGVALCKLLNSLSPGSVD   47 (103)
T ss_pred             HHHHHHHcccCCCCcHHHHHHHHccHHHHHHHHHHHCCCcCC
Confidence            689999999875 45678999999999999999999999887

Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.

>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []

Probab=99.04  E-value=4.2e-11  Score=73.66  Aligned_cols=60  Identities=27%  Similarity=0.334  Sum_probs=45.4

Q ss_pred             hhHHHHHhccC--CCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087          2 SIWIESCIKET--LPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         2 k~WIe~vlge~--l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      .+||.++++..  -.+..+|.+.|+||++||+|+|++.|+.++.+++....  +     .+|..++|++
T Consensus         5 l~Win~~l~~~~~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~~~~~--~-----~~~~~~~Ni~   66 (108)
T PF00307_consen    5 LKWINSHLEKYGKGRRVTNFSEDLRDGVVLCKLINKLFPGTIDLKKINPNL--K-----SPFDKLENIE   66 (108)
T ss_dssp             HHHHHHHHTTSTTTSTCSSTSGGGTTSHHHHHHHHHHSTTSSSGGGSSTSS--S-----SHHHHHHHHH
T ss_pred             HHHHHHHcccccCCCCcCcHHHHhcCHHHHHHHHHHHhhccchhhhccccc--h-----hhhHHHHHHH
Confidence            58999999876  23445899999999999999999999988766773211  1     5666666654

It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....

>KOG2996|consensus

Probab=97.82  E-value=1.1e-05  Score=66.21  Aligned_cols=35  Identities=26%  Similarity=0.354  Sum_probs=32.4

Q ss_pred             HHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcc
Q psy18087         18 ELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFA   52 (74)
Q Consensus        18 ~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~   52 (74)
                      +|..+|||||+||+|+|.|.|+++.+|+|+-.+|+
T Consensus        32 dlAq~LRDGvLLCqLlnnL~p~sIdlkeIn~rpQm   66 (865)
T KOG2996|consen   32 DLAQALRDGVLLCQLLNNLVPHSIDLKEINLRPQM   66 (865)
T ss_pred             HHHHHHhhhhHHHHHHhhcCCCcccHHHhhcCCCc
Confidence            78999999999999999999999999999977764

>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins

Probab=97.68  E-value=1.9e-05  Score=49.62  Aligned_cols=39  Identities=28%  Similarity=0.543  Sum_probs=33.4

Q ss_pred             CCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCC
Q psy18087         12 TLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDAD   50 (74)
Q Consensus        12 ~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~   50 (74)
                      ..++..+|...|+||++||.|++...|+.+|++.|.-.+
T Consensus         9 ~~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~~~I~~~~   47 (85)
T PF11971_consen    9 YFPPVEDLTQDLSDGRALCALIHFYCPQLLPLEDICLKT   47 (85)
T ss_pred             CCcchhhhhhhhccHHHHHHHHHHhCcceecHhHccccc
Confidence            446677999999999999999999999999987777443

>KOG0532|consensus

Probab=97.59  E-value=4.9e-05  Score=62.37  Aligned_cols=42  Identities=33%  Similarity=0.565  Sum_probs=32.6

Q ss_pred             HHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCC
Q psy18087          4 WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDA   49 (74)
Q Consensus         4 WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~   49 (74)
                      =||.-+..++|-  +|..+|-||||||+|||.+.|-+|+  .|..+
T Consensus       584 ~iEtRLk~sLp~--Dl~aALtDGViLChLaN~lRPRSV~--SIHVP  625 (722)
T KOG0532|consen  584 LIETRLKVSLPE--DLAAALTDGVILCHLANHLRPRSVA--SIHVP  625 (722)
T ss_pred             HHHHHhcccCch--hHHHHhhcchhhHhhhcccCCCCcc--ceecC
Confidence            345455555554  8999999999999999999998886  66543

>KOG0046|consensus

Probab=96.87  E-value=0.00043  Score=56.22  Aligned_cols=62  Identities=23%  Similarity=0.323  Sum_probs=45.7

Q ss_pred             hhHHHHHhccC------CC---CchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccCC
Q psy18087          2 SIWIESCIKET------LP---PSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQL   69 (74)
Q Consensus         2 k~WIe~vlge~------l~---~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~~   69 (74)
                      ..||-+.|+.+      +|   ...+|.+..||||+||||+|.=-|+.+-.+-||+      |+.==||+-.||.+|
T Consensus       125 v~hIN~~L~~Dpdl~~~lPinp~t~~lf~~vkDGvlLcKlIN~svPdTIDERaiN~------kk~Lnp~~~~EN~~l  195 (627)
T KOG0046|consen  125 VNHINSYLEGDPDLKHLLPINPNTNDLFDLVKDGVLLCKLINLSVPDTIDERAINT------KKKLNPFERNENLNL  195 (627)
T ss_pred             HHHHHHHhcCCcchhhcCCCCCchHHHHHHhccceeeehhhcccCCCchhhhhhcc------CCcCChhhhccchhh
Confidence            36888888753      22   3447999999999999999999999886666774      233346777777654

>KOG0046|consensus

Probab=95.51  E-value=0.011  Score=48.40  Aligned_cols=61  Identities=20%  Similarity=0.331  Sum_probs=46.8

Q ss_pred             hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087          2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      +.||-++ |-. |...++.+-||||.||-.+-.++.||.|.+++.+.++    .-.+|+|+-+||.+
T Consensus       394 r~WmNSl-gv~-p~vn~~f~Dl~dglVllq~~dki~pg~Vnwk~vnKp~----~~~~~~~kklENcN  454 (627)
T KOG0046|consen  394 RLWMNSL-GVN-PYVNNLFEDLRDGLVLLQLYDKVSPGSVNWKHVNKPP----SPLKMPFKKVENCN  454 (627)
T ss_pred             HHHHHhc-CCc-HHHHHHHHhhhhhhHHHHHHHHccCCccchhhccCCC----CcccccHHHhhcch
Confidence            4577663 221 2234788999999999999999999999999988665    24578899998864

>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function

Probab=87.54  E-value=0.59  Score=32.01  Aligned_cols=39  Identities=21%  Similarity=0.538  Sum_probs=26.9

Q ss_pred             hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcc
Q psy18087          2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVP   42 (74)
Q Consensus         2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~   42 (74)
                      .+|+.+ +.-+.++. .+...+.||+++|++.+.+.|..|.
T Consensus         2 ~~WL~~-l~ls~~~~-n~~rDfsdG~lvAEIl~~y~p~~vd   40 (158)
T PF06294_consen    2 LKWLQS-LDLSRPPK-NIRRDFSDGYLVAEILSRYYPKLVD   40 (158)
T ss_dssp             HHHHHH-S--S--SS--HHHHHTTSHHHHHHHHHH-TTT--
T ss_pred             hHHHhc-CCCCCCCC-chHHHcccccHHHHHHHHHCCCCcc
Confidence            479998 55555543 7889999999999999999998764

; PDB: 2EE7_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	74
3i6x_A	193	Crystal Structure Of The Calponin Homology Domain O		2e-11
2rr8_A	190	Solution Structure Of Calponin Homology Domain Of I		2e-11
1p5s_A	203	Structure And Function Of The Calponin-Homology Dom		5e-04
1p2x_A	159	Crystal Structure Of The Calponin-Homology Domain O		7e-04

>pdb|3I6X|A Chain A, Crystal Structure Of The Calponin Homology Domain Of Iqgap1 Length = 193

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 37/51 (72%)
Query: 4   WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVY 54
           W+E+C+ E LPP+TELE  LRNG+ LAKLG++  P++V   KIYD +   Y
Sbjct: 55  WMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRY 105

>pdb|2RR8|A Chain A, Solution Structure Of Calponin Homology Domain Of Iqgap1 Length = 190

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 37/51 (72%)
Query: 4  WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVY 54
          W+E+C+ E LPP+TELE  LRNG+ LAKLG++  P++V   KIYD +   Y
Sbjct: 33 WMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRY 83

>pdb|1P5S|A Chain A, Structure And Function Of The Calponin-Homology Domain Of An Iqgap Protein From Schizosaccharomyces Pombe Length = 203

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 4  WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPE 39
          WIE C+   L P++  E +LRNG+VLA L     P+
Sbjct: 63 WIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPD 98

>pdb|1P2X|A Chain A, Crystal Structure Of The Calponin-Homology Domain Of Rng2 From Schizosaccharomyces Pombe Length = 159

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 4  WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPE 39
          WIE C+   L P++  E +LRNG+VLA L     P+
Sbjct: 19 WIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPD 54

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	74
3i6x_A	193	P195, RAS GTPase-activating-like protein iqgap1; a	3e-13
2rr8_A	190	Iqgap1 protein; F-actin binding protein, protein b	5e-13
1p5s_A	203	RAS GTPase-activating-like protein RNG2; alpha-hel	1e-11
1p2x_A	159	RNG2 protein, RAS GTPase-activating-like protein;	3e-11
1h67_A	108	Calponin alpha; cytoskeleton, calponin homology do	1e-09
1wyp_A	136	Calponin 1; CH domain, F-actin binding, all-alpha,	4e-07
1wyr_A	121	RHO guanine nucleotide exchange factor 6; CH domai	7e-07
1wyn_A	146	Calponin-2; CH domain, F-actin binding, all alpha	7e-06
2l3g_A	126	RHO guanine nucleotide exchange factor 7; structur	8e-06
1ujo_A	144	Transgelin; CH domain, actin binding, structural g	3e-05
1wym_A	155	Transgelin-2; CH domain, F-actin binding, all heli	2e-04

>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens} Length = 193

 Score = 60.4 bits (146), Expect = 3e-13
 Identities = 27/52 (51%), Positives = 37/52 (71%)

Query: 4   WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYN 55
           W+E+C+ E LPP+TELE  LRNG+ LAKLG++  P++V   KIYD +   Y 
Sbjct: 55  WMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYK 106

>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens} Length = 190

 Score = 59.6 bits (144), Expect = 5e-13
 Identities = 27/52 (51%), Positives = 37/52 (71%)

Query: 4  WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYN 55
          W+E+C+ E LPP+TELE  LRNG+ LAKLG++  P++V   KIYD +   Y 
Sbjct: 33 WMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYK 84

>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 203

 Score = 56.1 bits (135), Expect = 1e-11
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 4   WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDA 49
           WIE C+   L P++  E +LRNG+VLA L     P+ +   KI+ +
Sbjct: 63  WIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLI--KIFYS 106

>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 159

 Score = 54.1 bits (130), Expect = 3e-11
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 4  WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDA 49
          WIE C+   L P++  E +LRNG+VLA L     P+ +   KI+ +
Sbjct: 19 WIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLI--KIFYS 62

>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1 Length = 108

 Score = 48.9 bits (117), Expect = 1e-09
 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 4  WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVP 42
          WIE      +         L++G++L +L + L P  V 
Sbjct: 11 WIEGATGRRIGD--NFMDGLKDGVILCELINKLQPGSVQ 47

>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 136

 Score = 43.3 bits (102), Expect = 4e-07
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 4  WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNR 56
          WIE      +         L++GI+L +  + L P  V   KI ++    +  
Sbjct: 25 WIEGVTGRRIGN--NFMDGLKDGIILCEFINKLQPGSVK--KINESTQNWHQL 73

>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 121

 Score = 42.2 bits (99), Expect = 7e-07
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 8/51 (15%)

Query: 4  WIESCIKETLP------PSTELESNLRNGIVLAKLGHYLDPEMVPESKIYD 48
          W+ S      P      P   L+S+L+NG+VL KL + L P  V   K   
Sbjct: 14 WLISLGVLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVE--KFCL 62

>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 146

 Score = 39.9 bits (93), Expect = 7e-06
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 4  WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDA 49
          WIE     ++ P  + +  L++G +L  L + L P  VP  KI  +
Sbjct: 25 WIEGLTGLSIGP--DFQKGLKDGTILCTLMNKLQPGSVP--KINRS 66

>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens} Length = 126

 Score = 39.6 bits (92), Expect = 8e-06
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 8/53 (15%)

Query: 4  WIESC------IKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDAD 50
          W+ +        K    P   L+++L++G+VL +L   L P  +   K+Y   
Sbjct: 20 WLITLGVLESPKKTISDPEGFLQASLKDGVVLCRLLERLLPGTIE--KVYPEP 70

>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1 Length = 144

 Score = 38.4 bits (89), Expect = 3e-05
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 4  WIESCIKETLPPST----ELESNLRNGIVLAKLGHYLDPEMVPESKIYD 48
          WI       +          +  L+NG++L+KL + L PE     K+ +
Sbjct: 17 WIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVPE 65

>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} Length = 155

 Score = 35.7 bits (82), Expect = 2e-04
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 4  WIESCIKE----TLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDA 49
          WI +  ++      P     ++ L++G VL +L + L PE     K   A
Sbjct: 25 WITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQA 74

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	74
3i6x_A	193	P195, RAS GTPase-activating-like protein iqgap1; a	99.87
2rr8_A	190	Iqgap1 protein; F-actin binding protein, protein b	99.86
1p2x_A	159	RNG2 protein, RAS GTPase-activating-like protein;	99.81
1h67_A	108	Calponin alpha; cytoskeleton, calponin homology do	99.8
1wym_A	155	Transgelin-2; CH domain, F-actin binding, all heli	99.78
1p5s_A	203	RAS GTPase-activating-like protein RNG2; alpha-hel	99.77
1wyp_A	136	Calponin 1; CH domain, F-actin binding, all-alpha,	99.77
1wyn_A	146	Calponin-2; CH domain, F-actin binding, all alpha	99.76
1ujo_A	144	Transgelin; CH domain, actin binding, structural g	99.76
2l3g_A	126	RHO guanine nucleotide exchange factor 7; structur	99.75
1wyr_A	121	RHO guanine nucleotide exchange factor 6; CH domai	99.72
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	99.45
2qjz_A	123	Microtubule-associated protein RP/EB family member	99.4
1wyo_A	159	Protein EB3, microtubule-associated protein RP/EB	99.34
2yrn_A	129	Neuron navigator 2 isoform 4; calponin homolgy dom	99.24
1aoa_A	275	T-fimbrin; actin-binding protein, calcium-binding,	99.03
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	99.0
1wku_A	254	Alpha-actinin 3; calponin homology domain, actin b	98.99
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	98.94
2wa7_A	245	Filamin-B; disease mutation, skeletal dysplasia, s	98.77
1sh5_A	245	Plectin 1, PLTN, PCN; actin-binding domain, calpon	98.56
1dxx_A	246	Dystrophin; structural protein, muscular dystrophy	98.52
3f7p_A	296	Plectin-1; plakin, hemidesmosome, cell adhesion, e	98.52
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	98.44
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	98.41
2vzc_A	131	Alpha-parvin; membrane, cytoplasm, cytoskeleton, c	98.41
3hoc_A	272	Filamin-A; calponin homology domain, actin binding	98.17
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	98.09
4b7l_A	347	Filamin-B; structural protein, FR 1 filamin hinge	97.65
2r8u_A	268	Microtubule-associated protein RP/EB family member	97.19
4abo_I	145	MAL3, microtubule integrity protein MAL3; structur	96.29
2d89_A	119	EHBP1 protein; all alpha, calponin homology domain	96.19
2d87_A	128	Smoothelin splice isoform L2; all alpha, calponin	96.05
2d88_A	121	Protein mical-3; all alpha, calponin homology doma	95.98
1wyl_A	116	NEDD9 interacting protein with calponin homology a	95.84
2qjx_A	127	Protein BIM1; calponin homology domain, protein bi	95.76
1wjo_A	124	T-plastin; CH domain, actin binding, structural ge	95.65
1bkr_A	109	Spectrin beta chain; filamentous actin-binding dom	95.56
1wyq_A	127	Spectrin beta chain, brain 2; NPPSFA, structural g	95.17
1wku_A	254	Alpha-actinin 3; calponin homology domain, actin b	95.0
1sh5_A	245	Plectin 1, PLTN, PCN; actin-binding domain, calpon	94.8
1aoa_A	275	T-fimbrin; actin-binding protein, calcium-binding,	94.79
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	94.7
1bhd_A	118	Utrophin; calponin homology, actin binding, struct	94.65
2wa7_A	245	Filamin-B; disease mutation, skeletal dysplasia, s	94.52
1dxx_A	246	Dystrophin; structural protein, muscular dystrophy	93.88
4b7l_A	347	Filamin-B; structural protein, FR 1 filamin hinge	92.05
3hoc_A	272	Filamin-A; calponin homology domain, actin binding	91.6
3f7p_A	296	Plectin-1; plakin, hemidesmosome, cell adhesion, e	91.56

>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}

Probab=99.87  E-value=2.3e-23  Score=145.51  Aligned_cols=68  Identities=40%  Similarity=0.742  Sum_probs=64.2

Q ss_pred             ChhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087          1 MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         1 ik~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      +++||++++|+++|+.++|+++|||||+||+|+|+|+|+++|.+||+++++.+|+.++++|++||||+
T Consensus        52 ~~~WIe~~lg~~l~~~~~l~~~LrdGvvLCkL~N~l~Pg~vp~kkI~~~~~~~~~~~~~~F~~~eNI~  119 (193)
T 3i6x_A           52 AKRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVI  119 (193)
T ss_dssp             HHHHHHHHHSSCCCCGGGHHHHHTTSHHHHHHHHHHCTTTCCGGGSTTTTCHHHHHSCCCGGGHHHHH
T ss_pred             HHHHHHHHhCCCCCChHHHHHHhccHHHHHHHHHHHCCCCCCccccCCcccccccCcccchHHHHHHH
Confidence            47899999999999877999999999999999999999999989999988889999999999999985

>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}

Probab=99.86  E-value=6.3e-23  Score=142.44  Aligned_cols=68  Identities=40%  Similarity=0.742  Sum_probs=63.4

Q ss_pred             ChhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087          1 MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         1 ik~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      +++||++++|+++|+.++|.++|||||+||+|+|+++|+++|.+||++.+..+|..++++|++||||+
T Consensus        30 ~~~WIe~~lg~~lp~~~~f~~~LrDGvvLCkL~N~l~P~sv~~~kI~~~~~~~~~~~~~~f~~~eNI~   97 (190)
T 2rr8_A           30 AKRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVI   97 (190)
T ss_dssp             HHHHHHHHSCCCCCCHHHHHHHHSSHHHHHHHHHHSCTTTSCSSCSSTTTCHHHHHTCCCSSTHHHHH
T ss_pred             HHHHHHHHhCCCCCChhHHHHHHcchhhHHHHHHHhCCCCcccccccccccccccCCCCcchHHHHHH
Confidence            47899999999999877999999999999999999999999888999888888889999999999985

>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=99.81  E-value=7.5e-21  Score=128.80  Aligned_cols=59  Identities=31%  Similarity=0.545  Sum_probs=53.3

Q ss_pred             ChhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087          1 MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         1 ik~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      +++||++++|+++|+.++|.++|||||+||+|+|+++|++++  ||+..       ++++|++||||+
T Consensus        16 ~~~WIe~~l~~~l~~~~~l~~~LkdGvvLCkL~N~l~P~~i~--kI~~~-------~~~~f~~~eNI~   74 (159)
T 1p2x_A           16 AKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLI--KIFYS-------NELQFRHSDNIN   74 (159)
T ss_dssp             HHHHHHHHHTSCCCCGGGHHHHTTTSHHHHHHHHHHCTTSCC--CCCCC-------SSCCTTHHHHHH
T ss_pred             HHHHHHHHhCCCCCChHHHHHHHcchHHHHHHHHHhCCCCcc--ccccc-------cCCcchHHHHHH
Confidence            478999999999998779999999999999999999999985  88732       588999999985

>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1

Probab=99.80  E-value=7.6e-21  Score=121.50  Aligned_cols=56  Identities=21%  Similarity=0.438  Sum_probs=50.6

Q ss_pred             ChhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087          1 MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         1 ik~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      +++||++++|+++++  +|.++|||||+||+|+|+++||+++  ||+        .+.++|+++|||+
T Consensus         8 ~~~WIe~~l~~~~~~--~l~~~L~dGvvLCkL~N~l~P~~v~--ki~--------~~~~~f~~~eNI~   63 (108)
T 1h67_A            8 LRVWIEGATGRRIGD--NFMDGLKDGVILCELINKLQPGSVQ--KVN--------DPVQNWHKLENIG   63 (108)
T ss_dssp             HHHHHHHHHSCCCCS--CHHHHHHHCSHHHHHHHHHSTTSST--TCC--------CTTSSHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcH--HHHHHHccHHHHHHHHHHhCCCCcc--ccc--------ccccchHHHHHHH
Confidence            478999999999965  8999999999999999999999996  887        4578999999986

>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=3.6e-20  Score=125.04  Aligned_cols=58  Identities=21%  Similarity=0.324  Sum_probs=51.9

Q ss_pred             ChhHHHHHhccCCCCc----hHHHHhhhhhHHHHHhhhhhCC---CCcccccccCCCcccccccCCccccccccC
Q psy18087          1 MSIWIESCIKETLPPS----TELESNLRNGIVLAKLGHYLDP---EMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         1 ik~WIe~vlge~l~~~----~~~~e~LkdGvvLckL~N~l~P---~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      +++||++++|+++++.    ++|.++|||||+||+|+|+|+|   ++|+  ||+        .+.++|++||||+
T Consensus        22 ~~~WIe~~l~~~l~~~~~~~~~~~~~LkDGvvLCkL~N~l~P~~~~~i~--kIn--------~~~~~F~~~eNI~   86 (155)
T 1wym_A           22 LIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVK--KIQ--------ASTMAFKQMEQIS   86 (155)
T ss_dssp             HHHHHHHHSSSCCCCCCSSHHHHHHHHHTSHHHHHHHHHHSCTTTCSCC--CCC--------CCCCHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCCcccHHHHHHHHcchHHHHHHHHHhccccCCCcC--ccc--------CCCccccHHHHHH
Confidence            4789999999999853    6899999999999999999999   9986  887        4579999999985

>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=99.77  E-value=1.2e-19  Score=127.30  Aligned_cols=59  Identities=31%  Similarity=0.538  Sum_probs=53.1

Q ss_pred             ChhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087          1 MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         1 ik~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      +++||++++++++|+.++|.++|||||+||+|+|+|+|++|+  ||+.       .+.++|++||||+
T Consensus        60 ~~~WIe~~l~~~l~~~~~f~~~LrDGvvLCkLiN~l~P~sv~--kI~~-------~s~~~f~~~eNI~  118 (203)
T 1p5s_A           60 AKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLI--KIFY-------SNELQFRHSDNIN  118 (203)
T ss_dssp             HHHHHHHHHTSCCCCGGGHHHHHTTSHHHHHHHHHHCTTSCC--CCCC-------CSSSCCCHHHHHH
T ss_pred             HHHHHHHHhCCCCCChHHHHHHHcchHHHHHHHHHhCCCCcc--cccC-------CCCCcchHHHHHH
Confidence            478999999999998779999999999999999999999995  8852       4588999999985

>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.77  E-value=5.5e-20  Score=121.91  Aligned_cols=56  Identities=23%  Similarity=0.410  Sum_probs=50.5

Q ss_pred             ChhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087          1 MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         1 ik~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      +++||++++|+++++  +|.++|||||+||+|+|+++|++++  ||+        .+.++|++||||+
T Consensus        22 ~~~WIe~~l~~~~~~--~l~~~L~DGvvLCkL~N~l~P~~v~--ki~--------~~~~~f~~~eNI~   77 (136)
T 1wyp_A           22 LREWIEGVTGRRIGN--NFMDGLKDGIILCEFINKLQPGSVK--KIN--------ESTQNWHQLENIG   77 (136)
T ss_dssp             HHHHHHHHTCCCCCS--CTTHHHHTSHHHHHHHHHHSTTSSS--CCC--------CSSCSHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcH--HHHHHHccHHhHHHHHHhhCCCCcc--ccc--------ccccchHHHHHHH
Confidence            478999999999965  8999999999999999999999996  887        4578999999986

>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.76  E-value=9.7e-20  Score=122.03  Aligned_cols=56  Identities=29%  Similarity=0.539  Sum_probs=50.5

Q ss_pred             ChhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087          1 MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         1 ik~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      +++||++++|++++.  +|.++|||||+||+|+|+++||+++  ||+        .+.++|++||||+
T Consensus        22 ~~~WIe~~l~~~i~~--~l~~~L~DGvvLCkL~N~l~P~~v~--kin--------~~~~~f~~~eNI~   77 (146)
T 1wyn_A           22 LRTWIEGLTGLSIGP--DFQKGLKDGTILCTLMNKLQPGSVP--KIN--------RSMQNWHQLENLS   77 (146)
T ss_dssp             HHHHHHHHHCCCCCS--CHHHHHHTTSHHHHHHHHHCTTSCS--CCC--------CSSCHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcH--HHHHHHccHHHHHHHHHHhCCCCcc--ccc--------cccccccHHHHHH
Confidence            478999999999964  8999999999999999999999996  887        4578999999985

>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1

Probab=99.76  E-value=1.1e-19  Score=121.44  Aligned_cols=59  Identities=19%  Similarity=0.219  Sum_probs=50.4

Q ss_pred             ChhHHHHHhccCCCC----chHHHHhhhhhHHHHHhhhhhCC---CCcccccccCCCcccccccCCccccccccC
Q psy18087          1 MSIWIESCIKETLPP----STELESNLRNGIVLAKLGHYLDP---EMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         1 ik~WIe~vlge~l~~----~~~~~e~LkdGvvLckL~N~l~P---~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      +++||++++|+++++    .++|.++|||||+||+|+|+|+|   ++|+ .||+        .++++|++||||+
T Consensus        14 ~~~WIe~~l~~~l~~~~~~~~~f~~~LkDGvvLCkL~N~l~P~~~~~I~-~kin--------~~~~~f~~~eNI~   79 (144)
T 1ujo_A           14 LVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVK-VPEN--------PPSMVFKQMEQVA   79 (144)
T ss_dssp             HHHHHHHHHCTTTCCCCSSSSSHHHHTTSSHHHHHHHHHHSCTTTCCSC-CCSS--------CCCSHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCcCCcHHHHHHHHcchHHHHHHHHHhCcccCCCcc-eeec--------CCCchhHHHHHHH
Confidence            478999999999962    35899999999999999999999   7774 2555        5679999999985

>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}

Probab=99.75  E-value=2.4e-19  Score=118.04  Aligned_cols=59  Identities=24%  Similarity=0.454  Sum_probs=49.2

Q ss_pred             ChhHHHHHhc-cC----CCCchHH-HHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087          1 MSIWIESCIK-ET----LPPSTEL-ESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         1 ik~WIe~vlg-e~----l~~~~~~-~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      +++||+++++ ++    +++.++| +++|||||+||+|+|+++||++|  ||+.       .++++|++||||+
T Consensus        17 ~~~WI~~~~~L~~~~~~~~~~~~~l~~~LkdGvvLCkLiN~l~Pg~i~--kI~~-------~~~~~f~~~eNI~   81 (126)
T 2l3g_A           17 TVTWLITLGVLESPKKTISDPEGFLQASLKDGVVLCRLLERLLPGTIE--KVYP-------EPRSESECLSNIR   81 (126)
T ss_dssp             HHHHHHHTTSSCCCSSCCSCHHHHHHHHHTTSHHHHHHHHHHSTTCCS--CCCS-------SCCSHHHHHHHHH
T ss_pred             HHHHHHHHhCccccCCCCCChhhHHHHHHccHHHHHHHHHHhCCCCCC--ccCC-------CCCcchHHHHHHH
Confidence            3689999976 43    4456677 79999999999999999999997  8873       3468999999986

>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.72  E-value=1.3e-18  Score=113.54  Aligned_cols=59  Identities=27%  Similarity=0.332  Sum_probs=48.3

Q ss_pred             ChhHHHHHhccCC-----CCchH-HHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087          1 MSIWIESCIKETL-----PPSTE-LESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         1 ik~WIe~vlge~l-----~~~~~-~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      +++||+++++.+.     ++.++ |.++|||||+||+|+|+++||+++  ||+.+       ++++|++||||+
T Consensus        11 ~~~WI~~~~~l~~~~~~~~~~~~~l~~~L~dGvvLCkL~N~l~Pg~i~--ki~~~-------~~~~f~~~eNI~   75 (121)
T 1wyr_A           11 IVTWLISLGVLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVE--KFCLD-------PQTEADCINNIN   75 (121)
T ss_dssp             HHHHHHHHTSSCCCSSCCSCHHHHHHHHHHHSHHHHHHHHHHSTTCCS--CCCSS-------CCSHHHHHHHHH
T ss_pred             HHHHHHHhcCcCCcccCCCCcHHHHHHHHccHHHHHHHHHHhCCCCCC--cCCCC-------CcchHHHHHHHH
Confidence            3689999987543     23444 689999999999999999999997  88743       367999999986

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=99.45  E-value=2e-14  Score=110.62  Aligned_cols=62  Identities=19%  Similarity=0.288  Sum_probs=49.0

Q ss_pred             ChhHHHHHhccCCC--------CchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087          1 MSIWIESCIKETLP--------PSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         1 ik~WIe~vlge~l~--------~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      +++||+++..-+..        +.++|.++|||||+||+|+|+|+|+++|.++|+..+      +..+|++||||.
T Consensus        10 ~~~Wl~~~~~l~~~~~~~~~~~~~~~l~~~L~~G~~Lc~l~n~l~p~~v~~~~~~~~~------~~~~f~~~~ni~   79 (587)
T 3ky9_A           10 CTHWLIQCRVLPPSHRVTWEGAQVCELAQALRDGVLLCQLLNNLLPHAINLREVNLRP------QMSQFLCLKNIR   79 (587)
T ss_dssp             HHHHHHHTTCSCTTSTTTSTTCCHHHHHHHHSSTHHHHHHHHHHSTTSSCGGGSCSSC------TTBHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCcccccCCCCChhhHHHHhCcHHHHHHHHHHhCCCCCCccccCCCc------cccchHHHHHHH
Confidence            36899998653321        246899999999999999999999999888888543      233699999884

>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A

Probab=99.40  E-value=7.1e-14  Score=92.15  Aligned_cols=58  Identities=17%  Similarity=0.283  Sum_probs=50.3

Q ss_pred             ChhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccCC
Q psy18087          1 MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQL   69 (74)
Q Consensus         1 ik~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~~   69 (74)
                      +.+||.++|+.+++..    |.|+||+++|+|+|+|.||+||++||+-       .++++|.+|+|+.+
T Consensus        10 lL~WIN~~L~~~~~ki----E~L~~Ga~yCqlmd~l~Pg~v~l~KVkf-------~a~~e~e~~~N~k~   67 (123)
T 2qjz_A           10 MLAWINESLQLNLTKI----EQLCSGAAYCQFMDMLFPGSIALKKVKF-------QAKLEHEYIQNFKI   67 (123)
T ss_dssp             HHHHHHHHHTCCCCCG----GGGGGSHHHHHHHHHHSTTSSCGGGCCT-------TCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCchH----HHcCchHHHHHHHHHHccCCCcHHHhcc-------CCCChHHHHHHHHH
Confidence            3689999999999875    4799999999999999999999888872       45788999998753

>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=2.3e-13  Score=93.19  Aligned_cols=58  Identities=16%  Similarity=0.238  Sum_probs=50.4

Q ss_pred             ChhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccCC
Q psy18087          1 MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQL   69 (74)
Q Consensus         1 ik~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~~   69 (74)
                      +.+||+++|+++++..    |.|+||+++|+|+|+|.||+||++||+-       .++++|++|+|+.+
T Consensus        27 lL~WIN~~L~~~~~ki----E~L~~GaayCQLmd~L~PgsV~l~KVkf-------~a~~e~e~~~N~k~   84 (159)
T 1wyo_A           27 MLAWVNDSLHLNYTKI----EQLCSGAAYCQFMDMLFPGCVHLRKVKF-------QAKLEHEYIHNFKV   84 (159)
T ss_dssp             HHHHHHHHSCCCCSSG----GGGGGCHHHHHHHHHHSTTSSCTTSCCT-------TCCSSHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCchh----hhcCccHHHHHHHHHHccCCCcHhhhcc-------CCCChHHHHHHHHH
Confidence            3689999999999875    4799999999999999999999888872       45889999999753

>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=2.8e-12  Score=83.27  Aligned_cols=58  Identities=14%  Similarity=0.361  Sum_probs=48.0

Q ss_pred             hhHHHHHhccCCC--CchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087          2 SIWIESCIKETLP--PSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         2 k~WIe~vlge~l~--~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      .+||.++|++...  ...+|.+.||||++||+|+|.|.|+.++  +++..+       .++|+.|+|++
T Consensus        24 ~~WIN~~L~~~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~l~--~~~~~p-------~~~~~~~eNv~   83 (129)
T 2yrn_A           24 TDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIE--DINGCP-------KNRSQMIENID   83 (129)
T ss_dssp             HHHHHHHHHHTCCCSCCSCHHHHSSSSHHHHHHHHHHTTCCCT--TCCSSC-------CSTTHHHHHHH
T ss_pred             HHHHHHHhcccCCCccchhHHHHcccHHHHHHHHHHHhcCCcc--cccCCC-------CcHHHHHHHHH
Confidence            5799999998643  3568999999999999999999999886  666333       57888999875

>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1

Probab=99.03  E-value=1.2e-10  Score=83.08  Aligned_cols=60  Identities=18%  Similarity=0.325  Sum_probs=48.0

Q ss_pred             hhHHHHHhccC--------CC-CchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087          2 SIWIESCIKET--------LP-PSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         2 k~WIe~vlge~--------l~-~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      .+||.++|++.        ++ ...+|.+.||||++||+|+|.+.|+.+++++++..+       -.+|+.++|++
T Consensus        30 ~~WiN~~L~~~~~~~~~~~i~~~v~dl~~dL~DGv~L~~Lle~l~~~~v~~~~i~~~~-------~~~~~~~eNv~   98 (275)
T 1aoa_A           30 VNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKK-------LTPFIIQENLN   98 (275)
T ss_dssp             HHHHHHHTTTCTTSTTTCSCCTTTTHHHHHGGGSHHHHHHHHHHSTTSSCGGGSCCSS-------CCHHHHHHHHH
T ss_pred             HHHHHHHhccCccccccCCCCCccchHHHHhccHHHHHHHHHHhcCCCCCccccCCCC-------CCHHHHHHHHH
Confidence            57999999973        32 346899999999999999999999999877777322       23678888875

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B

Probab=99.00  E-value=1.3e-10  Score=88.77  Aligned_cols=61  Identities=23%  Similarity=0.287  Sum_probs=49.4

Q ss_pred             hhHHHHHhccC------CC---CchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087          2 SIWIESCIKET------LP---PSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         2 k~WIe~vlge~------l~---~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      .+||.++|++.      +|   ...+|.+.||||++||+|+|++.|+.+..++|+.++      ...+|+.++||+
T Consensus        13 ~~WIN~~L~~~~~~~~~l~~~~~v~~l~~dL~DGv~L~~Lin~l~~~~i~~~~in~~~------~~~~~~~~eNi~   82 (506)
T 1pxy_A           13 VQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKR------VLNPWERNENHT   82 (506)
T ss_dssp             HHHHHHHHTTCTTTTTTCSCCTTSSHHHHHSTTSHHHHHHHHHHSTTSSCGGGSCCCS------SCCHHHHHHHHH
T ss_pred             HHHHHHHhccCccccccCCCCCchhHHHHHhcchHHHHHHHHHHcCCCCCccccCccc------cccHHHHHHHHH
Confidence            47999999987      32   355899999999999999999999998666787442      234789999986

>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K

Probab=98.99  E-value=5.5e-11  Score=84.52  Aligned_cols=57  Identities=18%  Similarity=0.335  Sum_probs=48.7

Q ss_pred             hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087          2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      .+||.++|++.-++..+|.+.||||++||+|+|.|.|+.++  +++        .+.++|+.++|++
T Consensus        33 ~~WiN~~L~~~~~~v~~l~~dl~DGv~L~~Lle~l~~~~v~--k~~--------~~~~~~~~~eNi~   89 (254)
T 1wku_A           33 TAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLP--RPD--------KGKMRFHKIANVN   89 (254)
T ss_dssp             HHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHCSCCC--CCC--------SCCSHHHHHHHHH
T ss_pred             HHHHHHHccccCCCccCHHHHccCHHHHHHHHHHhCcCCCC--CCC--------CCccHHHHHHhHH
Confidence            57999999987776778999999999999999999999886  432        3468899999986

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=98.94  E-value=3.8e-10  Score=86.47  Aligned_cols=64  Identities=17%  Similarity=0.287  Sum_probs=50.8

Q ss_pred             hhHHHHHhccC------CC---CchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087          2 SIWIESCIKET------LP---PSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         2 k~WIe~vlge~------l~---~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      .+||.++|++.      +|   ...+|.+.||||++||+|+|++.|+.++.++|+.+   .+++..++|+.++|++
T Consensus        18 ~~WIN~~L~~~~~~~~~lpi~~~v~dl~~dL~DG~~L~~Lie~l~~~~i~~~~i~~~---~~~~~~~~~~~~eNi~   90 (513)
T 1rt8_A           18 IKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQ---RNNKPLDNFKCIENNN   90 (513)
T ss_dssp             HHHHHHHHTTCTTTGGGCSCCTTSTHHHHHTTTSHHHHHHHHHHSTTSSCGGGSCCC---C---CCCHHHHHHHHH
T ss_pred             HHHHHHhccCCccccccCCCCCchHHHHHHhhcHHHHHHHHHHHcCCCcchhhcCCc---cccCcccHHHHHHHHH
Confidence            58999999986      22   34589999999999999999999999876778743   2345678999999975

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A

Probab=98.77  E-value=1.1e-09  Score=77.24  Aligned_cols=59  Identities=17%  Similarity=0.211  Sum_probs=47.5

Q ss_pred             hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087          2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      .+||.++|++.-+...+|.+.||||++||+|+|+|.|+.++ ++++.++       .++|+.++|++
T Consensus        26 ~~WiN~~L~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~~~-~~~n~~~-------~~~~~~~eNv~   84 (245)
T 2wa7_A           26 TRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMY-RKYHQRP-------TFRQMQLENVS   84 (245)
T ss_dssp             HHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTCCCS-SCCCSSC-------CSHHHHHHHHH
T ss_pred             HHHHHHhccccCCCccCHHHHcccHHHHHHHHHHHcCCCCc-hhcCCCC-------CcHHHHHHHHH
Confidence            57999999876555668999999999999999999999874 4776443       45677788875

>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A

Probab=98.56  E-value=8.5e-09  Score=72.28  Aligned_cols=56  Identities=20%  Similarity=0.328  Sum_probs=45.0

Q ss_pred             hhHHHHHhccC----CC-CchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087          2 SIWIESCIKET----LP-PSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         2 k~WIe~vlge~----l~-~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      .+||.+++++.    .+ ...+|.+.|+||++||+|++.+.|+.+|  +.         ...++|+.++|++
T Consensus        18 ~~WiN~~L~~~~~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~--~~---------~~~~~~~~~eNv~   78 (245)
T 1sh5_A           18 TKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLP--RE---------KGRMRFHKLQNVQ   78 (245)
T ss_dssp             HHHHHHHHTTCSSGGGCCCCSCTTTTTTTSHHHHHHHHHHHCCCCC--CC---------CCCSHHHHHHHHH
T ss_pred             HHHHHHhccccccccCCCCccchHhhccCHHHHHHHHHHhcCcccc--CC---------CCcchHHHHHhHH
Confidence            47999999884    32 4558999999999999999999998886  21         2357888898876

>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A

Probab=98.52  E-value=1.1e-08  Score=71.93  Aligned_cols=56  Identities=20%  Similarity=0.273  Sum_probs=45.1

Q ss_pred             hhHHHHHhccCC-CCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087          2 SIWIESCIKETL-PPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         2 k~WIe~vlge~l-~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      .+||.+++++.. ++..+|.+.|+||++||+|+|+|.|+.+|  +.         ...++|+.++|++
T Consensus        22 ~~WiN~~L~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~--~~---------~~~~~~~~~eNv~   78 (246)
T 1dxx_A           22 TKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLP--KE---------KGSTRVHALNNVN   78 (246)
T ss_dssp             HHHHHHHHHHTTCCCCSCTTTTTTTSHHHHHHHHHHHSCCCC--CC---------CCSSHHHHHHHHH
T ss_pred             HHHHHHhccccCCCCccCHHHHhCcHHHHHHHHHHHcCCcCC--CC---------CCccHHHHHHHHH
Confidence            579999998764 45668999999999999999999988775  21         2346788888875

>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}

Probab=98.52  E-value=1.3e-08  Score=74.44  Aligned_cols=57  Identities=19%  Similarity=0.338  Sum_probs=46.6

Q ss_pred             hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccCC
Q psy18087          2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQL   69 (74)
Q Consensus         2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~~   69 (74)
                      .+||.+.+++.-+...+|.+.||||++||+|++.|.|+.+|  + .        ...++|+.++|+++
T Consensus        79 t~WINs~L~~~~~~V~dL~~DL~DGvvL~~Lle~L~~~~l~--~-~--------~~~~r~~kleNvn~  135 (296)
T 3f7p_A           79 TKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLP--R-E--------KGRMRFHKLQNVQI  135 (296)
T ss_dssp             HHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHCCCCC--C-C--------CCSSHHHHHHHHHH
T ss_pred             HHHHHHHcccCCCCcccHHHHHhhHHHHHHHHHHhcCCccc--c-c--------CCcChhhhhhhHHH
Confidence            47999999876666668999999999999999999999886  2 1        24578888988763

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=98.44  E-value=8.3e-08  Score=73.53  Aligned_cols=63  Identities=19%  Similarity=0.325  Sum_probs=47.9

Q ss_pred             hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087          2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      .+||.+. +.+. ...+|.+.||||++||+|++++.||.+.+++++..|..  .+..++|+.++|++
T Consensus       291 ~~WiN~~-~~~~-~v~~l~~DL~DG~~L~~Lle~l~~g~v~~~~~~~~p~~--~~~~~r~~~~eNv~  353 (513)
T 1rt8_A          291 TLWLNSL-DVTP-SIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPAS--GDEMMRFKAVENCN  353 (513)
T ss_dssp             HHHHHHT-TCSS-CCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGSCCCCTT--SCCCCHHHHHHHHH
T ss_pred             HHHHHhc-CCCC-CccCHHHHHhhHHHHHHHHHHhCCCCcchhhhcCCccc--ccccchHHHHHHHH
Confidence            4799998 3332 34589999999999999999999999877788754411  01247899999875

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=98.41  E-value=2.4e-08  Score=78.50  Aligned_cols=57  Identities=19%  Similarity=0.318  Sum_probs=47.6

Q ss_pred             hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087          2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      .+||.++|++.-++..+|.+.|+||++||+|++.|.|+.+|  +++        .+.++|..++|++
T Consensus        14 ~~Win~~L~~~~~~v~~l~~dl~DG~~L~~l~e~l~~~~~~--~~~--------~~~~~~~~~eN~~   70 (863)
T 1sjj_A           14 TAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLA--KPE--------RGKMRVHKISNVN   70 (863)
T ss_dssp             HHHHHHHHHHHCSCCCCCSSTTSSCHHHHHHHHHTSCCCCC--CSC--------CCSSHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCccCHHHHhcCHHHHHHHHHHhCCCcee--CCC--------CCccHHHHHHHHH
Confidence            47999999877666778999999999999999999999886  443        2357888888875

>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*

Probab=98.41  E-value=4.9e-08  Score=63.87  Aligned_cols=60  Identities=17%  Similarity=0.211  Sum_probs=46.6

Q ss_pred             hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087          2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      ..||-+.|.+.-.+..+|.+.|+||++||+|++.+.|+.+|+++++..|.       ++|..++|++
T Consensus        28 t~WiN~~L~~~~~~v~dL~~Dl~DGv~L~~Lle~ls~~~~~~~~~~~~p~-------~r~~kieNv~   87 (131)
T 2vzc_A           28 ITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPD-------SFEQKVLNVS   87 (131)
T ss_dssp             HHHHHHHHGGGTCCCCCTTTTTTTSHHHHHHHHHHTTCCCCTTSSCSSCC-------SHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCcccCHHHHcccHHHHHHHHHHhcCCCCCHHHhcCCCC-------cHHHHHHHHH
Confidence            46999888764335668999999999999999999999998777775553       4566666654

>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A

Probab=98.17  E-value=2.5e-07  Score=66.85  Aligned_cols=59  Identities=17%  Similarity=0.227  Sum_probs=44.1

Q ss_pred             hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087          2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      .+||-+.|...-+...+|.+.||||++||+|++.|.|+.+ .++++..+.       ++|..++|++
T Consensus        53 t~WiN~~L~~~~~~V~dL~~DL~DGv~L~~Lle~Ls~~~l-~~~~~~~p~-------~r~~kleNv~  111 (272)
T 3hoc_A           53 TRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKM-HRKHNQRPT-------FRQMQLENVS  111 (272)
T ss_dssp             HHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTSCC-SSCCCSSCC-------SHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCcccHHHHHhhHHHHHHHHHHHcCCcc-ccccCCCCc-------cHHHHHHHHH
Confidence            4799999876545566899999999999999999999877 247665442       3445566653

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B

Probab=98.09  E-value=1.1e-06  Score=67.20  Aligned_cols=59  Identities=15%  Similarity=0.226  Sum_probs=44.8

Q ss_pred             hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087          2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      .+||.+.+-.  +...+|.+.|+||++||+|++.|.|+.+++++++.++      ..++|+.++|++
T Consensus       282 ~~WiN~~~~~--~~v~dl~~Dl~DG~~L~~Lle~l~~~~~~~~~~~~~~------~~~r~~~leNv~  340 (506)
T 1pxy_A          282 RLWINSLGID--SYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPP------IKMPFRKVENCN  340 (506)
T ss_dssp             HHHHTTTTCS--SCCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGCCCSS------CCCHHHHHHHHH
T ss_pred             HHHHHhcCCC--CCcccHHHHHHhHHHHHHHHHHHcCCccccccccCCc------cccHHHHHHHHH
Confidence            4799887532  2345899999999999999999999998876776432      246777788764

>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A

Probab=97.65  E-value=9.2e-06  Score=59.98  Aligned_cols=48  Identities=19%  Similarity=0.267  Sum_probs=37.4

Q ss_pred             hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCC
Q psy18087          2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDAD   50 (74)
Q Consensus         2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~   50 (74)
                      .+||-+.|...-+...+|.+.|+||++||+|++.|.+..++ ++.+..+
T Consensus        23 t~WiN~~L~~~~~~V~dL~~Dl~DG~~L~~Lle~ls~~~l~-~~~~~~p   70 (347)
T 4b7l_A           23 TRWCNEHLKSVNKRIGNLQTDLSDGLRLIALLEVLSQKRMY-RKYHQRP   70 (347)
T ss_dssp             HHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTCCCS-SCCCSSC
T ss_pred             HHHHHHhhCcCCCCcCCHHHHhcCHHHHHHHHHHHcCCccC-hhhcCCc
Confidence            36999888665455668999999999999999999988775 3444333

>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A

Probab=97.19  E-value=0.00036  Score=50.91  Aligned_cols=45  Identities=18%  Similarity=0.260  Sum_probs=39.2

Q ss_pred             hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCC
Q psy18087          2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDAD   50 (74)
Q Consensus         2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~   50 (74)
                      ..||-+.|+-.+...+    .|.+|.+.|.|+..|.||.||++||.-..
T Consensus        21 L~WiN~~L~~~~~kiE----el~tGaayCQlmd~l~P~~i~l~kVkf~a   65 (268)
T 2r8u_A           21 LAWINESLQLNLTKIE----QLCSGAAYCQFMDMLFPGSIALKKVKFQA   65 (268)
T ss_dssp             HHHHHHHHTCCCCCGG----GGGGSHHHHHHHHHHSTTSSCGGGCCTTC
T ss_pred             HHHHHHHhcCCcchHH----HcccchHHHHHHHHHccCCCchhhccCCC
Confidence            5799999999888754    48999999999999999999999987554

>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}

Probab=96.29  E-value=0.0036  Score=42.13  Aligned_cols=44  Identities=14%  Similarity=0.178  Sum_probs=37.7

Q ss_pred             hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCC
Q psy18087          2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDAD   50 (74)
Q Consensus         2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~   50 (74)
                      ..||-+.|+-.+...+    .|.+|.+-|.|+..|. |+||++|+.-..
T Consensus        12 L~WiN~~L~~n~tkIE----~l~sGAaYCQlmD~lf-g~i~l~kVkf~a   55 (145)
T 4abo_I           12 LAWINQVTSLGLTRIE----DCGKGYAMIQIFDSIY-QDIPLKKVNFEC   55 (145)
T ss_dssp             HHHHHHHHTCCCCSGG----GGGGSHHHHHHHHHHH-CCSCTTTSCSSC
T ss_pred             HHHHHHHcCCCcchHH----HccccHHHHHHHHHHh-cCcchhhcccCC
Confidence            5799999998887754    5899999999999999 889999987443

>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.19  E-value=0.0027  Score=40.43  Aligned_cols=47  Identities=17%  Similarity=0.371  Sum_probs=36.5

Q ss_pred             hhHHHHHhccC-CCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccC
Q psy18087          2 SIWIESCIKET-LPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYD   48 (74)
Q Consensus         2 k~WIe~vlge~-l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~   48 (74)
                      .+|....+..- --...+|-...+||.++|-|++.+.|+.++...+..
T Consensus        15 L~W~~~~~~~y~~v~v~nFs~sw~dG~af~aLi~~~~P~lid~~~l~~   62 (119)
T 2d89_A           15 LVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNP   62 (119)
T ss_dssp             HHHHHHHTTTCSSCCCCCSSHHHHTTHHHHHHHHHHCTTTSCGGGCCT
T ss_pred             HHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCcCChhhhcc
Confidence            57999888532 113558999999999999999999999887555543

>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A

Probab=96.05  E-value=0.0028  Score=41.06  Aligned_cols=46  Identities=15%  Similarity=0.224  Sum_probs=36.2

Q ss_pred             hhHHHHHhccC-CCCchHHHHhhhhhHHHHHhhhhhCCCCccccccc
Q psy18087          2 SIWIESCIKET-LPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIY   47 (74)
Q Consensus         2 k~WIe~vlge~-l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~   47 (74)
                      .+|....+..- --...+|-...+||.++|.|++.+.|+.++...+.
T Consensus        13 L~W~q~~~~~y~~v~V~nFs~sw~DG~af~aLih~~~P~lid~~~l~   59 (128)
T 2d87_A           13 LDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLS   59 (128)
T ss_dssp             HHHHHHHSSSCTTCCCSCTTTTTTSSHHHHHHHHHHCTTTSCSTTSC
T ss_pred             HHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCcCCHHHcC
Confidence            57999888642 11355899999999999999999999988755554

>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A

Probab=95.98  E-value=0.0036  Score=40.05  Aligned_cols=46  Identities=15%  Similarity=0.250  Sum_probs=35.8

Q ss_pred             hhHHHHHhccC-CCCchHHHHhhhhhHHHHHhhhhhCCCCccccccc
Q psy18087          2 SIWIESCIKET-LPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIY   47 (74)
Q Consensus         2 k~WIe~vlge~-l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~   47 (74)
                      .+|....+..- --...+|-...+||.++|.|++.+.|+.++...+.
T Consensus        15 L~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~~~l~   61 (121)
T 2d88_A           15 LGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLIDFDSLD   61 (121)
T ss_dssp             HHHHHHHSTTSSSCCCCCSSHHHHTSHHHHHHHHHHCTTTSCTTTSC
T ss_pred             HHHHHHHhccCCCCCCCCchhhccccHHHHHHHHHhCcCcCCHHHcC
Confidence            57999888531 11355899999999999999999999988655554

>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A

Probab=95.84  E-value=0.0037  Score=39.66  Aligned_cols=46  Identities=20%  Similarity=0.281  Sum_probs=35.7

Q ss_pred             hhHHHHHhccC-CCCchHHHHhhhhhHHHHHhhhhhCCCCccccccc
Q psy18087          2 SIWIESCIKET-LPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIY   47 (74)
Q Consensus         2 k~WIe~vlge~-l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~   47 (74)
                      .+|....+..- --...+|-...+||.++|-|++.+.|+.++...+.
T Consensus        13 L~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~lid~~~l~   59 (116)
T 1wyl_A           13 LRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEPSELQ   59 (116)
T ss_dssp             HHHHHHHHHHSTTCCCSCTTTTTTSSHHHHHHHHHHCTTSCCCSSGG
T ss_pred             HHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCCCCHHHhc
Confidence            57998877531 11355899999999999999999999988755554

>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}

Probab=95.76  E-value=0.0074  Score=39.61  Aligned_cols=43  Identities=7%  Similarity=0.159  Sum_probs=36.2

Q ss_pred             hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCC
Q psy18087          2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDA   49 (74)
Q Consensus         2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~   49 (74)
                      .+||-+.++-.+...+    .|.+|.+.|.|++.+. |.+|.+|+.-.
T Consensus        16 L~WiN~~L~~n~~kiE----el~tGaayCQl~d~l~-g~v~l~kVkf~   58 (127)
T 2qjx_A           16 LTWLNGLLNLNYKKIE----ECGTGAAYCQIMDSIY-GDLPMNRVKFN   58 (127)
T ss_dssp             HHHHHHHHTCCCCSGG----GGGGSHHHHHHHHHHH-CCSCGGGSCTT
T ss_pred             HHHHHHHHcCCccHHH----HccchHHHHHHHhhhc-cccCccccCCC
Confidence            5799999999887754    4689999999999999 56898888743

>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A

Probab=95.65  E-value=0.0062  Score=39.68  Aligned_cols=45  Identities=9%  Similarity=0.273  Sum_probs=34.5

Q ss_pred             hhHHHHHhccCC--CCchHHH-HhhhhhHHHHHhhhhhCCCCcccccc
Q psy18087          2 SIWIESCIKETL--PPSTELE-SNLRNGIVLAKLGHYLDPEMVPESKI   46 (74)
Q Consensus         2 k~WIe~vlge~l--~~~~~~~-e~LkdGvvLckL~N~l~P~~v~~kkI   46 (74)
                      .+|.-..+...-  ....+|. ..++||+++|.|++.+.|+.+...-+
T Consensus        13 l~W~N~kl~~~g~~~~I~~F~d~sl~dG~~~l~Ll~~i~P~~vd~~lv   60 (124)
T 1wjo_A           13 VNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLV   60 (124)
T ss_dssp             HHHHHHHHHHHTCSCCCSCTTCTTGGGTHHHHHHHHHHSTTSCCTTTS
T ss_pred             HHHHHHHHHhcCCCcccCCCCcchhhhhHHHHHHHHHHCcCccCHHHh
Confidence            478887665422  2355799 89999999999999999999865433

>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A

Probab=95.56  E-value=0.0044  Score=38.90  Aligned_cols=47  Identities=15%  Similarity=0.281  Sum_probs=36.1

Q ss_pred             hhHHHHHhccC-CCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccC
Q psy18087          2 SIWIESCIKET-LPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYD   48 (74)
Q Consensus         2 k~WIe~vlge~-l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~   48 (74)
                      ..|....+..- --...+|-.+.+||.++|.|++.+.|+.++...+..
T Consensus         9 L~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~lid~~~l~~   56 (109)
T 1bkr_A            9 LLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKK   56 (109)
T ss_dssp             HHHHHHHTTTCTTCCCSSSSGGGTTSHHHHHHHHHHCGGGCCGGGCCT
T ss_pred             HHHHHHHHccCCCCCCCCCcccccccHHHHHHHHHHCcCCCCHHHcCc
Confidence            57998877531 113568999999999999999999999887555543

>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}

Probab=95.17  E-value=0.0073  Score=38.94  Aligned_cols=47  Identities=11%  Similarity=0.270  Sum_probs=36.3

Q ss_pred             hhHHHHHhcc-CCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccC
Q psy18087          2 SIWIESCIKE-TLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYD   48 (74)
Q Consensus         2 k~WIe~vlge-~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~   48 (74)
                      ..|....+.. +--...+|-...+||.++|.|++.+.|+.++...+..
T Consensus        13 L~W~q~~~~~y~~v~V~nFs~sw~DG~Af~aLih~~~P~lid~~~l~~   60 (127)
T 1wyq_A           13 LLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLLDFESLKK   60 (127)
T ss_dssp             HHHHHHHHHTSSSCCCSCSSTTSSSSHHHHHHHHHHCTTTCCTTTSCS
T ss_pred             HHHHHHHHhcCCCCCCCCCcccccccHHHHHHHHHHCcCcCCHHHhCc
Confidence            5799887753 1113558999999999999999999999887666543

>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K

Probab=95.00  E-value=0.012  Score=41.35  Aligned_cols=46  Identities=15%  Similarity=0.343  Sum_probs=34.8

Q ss_pred             hhHHHHHhcc-CCCCchHHHHhhhhhHHHHHhhhhhCCCCccccccc
Q psy18087          2 SIWIESCIKE-TLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIY   47 (74)
Q Consensus         2 k~WIe~vlge-~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~   47 (74)
                      ..|+...+.. +--+..+|-..++||.++|.|++.+.|+.++...+.
T Consensus       146 L~W~~~~~~~y~~v~v~nFs~s~~DG~a~~aLi~~~~P~~id~~~l~  192 (254)
T 1wku_A          146 LLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYAKLR  192 (254)
T ss_dssp             HHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHHCTTSCCGGGCC
T ss_pred             HHHHHHHccCCCCCcCCCCccchhhHHHHHHHHHHHCCCcccccccC
Confidence            5799877741 111355788999999999999999999988755544

>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A

Probab=94.80  E-value=0.01  Score=41.22  Aligned_cols=46  Identities=15%  Similarity=0.374  Sum_probs=35.2

Q ss_pred             hhHHHHHhccC-CCCchHHHHhhhhhHHHHHhhhhhCCCCccccccc
Q psy18087          2 SIWIESCIKET-LPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIY   47 (74)
Q Consensus         2 k~WIe~vlge~-l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~   47 (74)
                      ..|+...+..- --...+|...++||.++|.|++.+.|+.++...+.
T Consensus       139 L~W~~~~~~~~~~~~v~nF~~s~~DG~a~~aLi~~~~P~~i~~~~l~  185 (245)
T 1sh5_A          139 LLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVY  185 (245)
T ss_dssp             HHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHTTCTTTCCHHHHH
T ss_pred             HHHHHHHhccCCCcccCCccccccchHHHHHHHHHHCCCCCCHHHcc
Confidence            47988777541 11345788999999999999999999998755443

>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1

Probab=94.79  E-value=0.0051  Score=43.44  Aligned_cols=41  Identities=7%  Similarity=0.204  Sum_probs=32.0

Q ss_pred             hhHHHHHhccC-CCCchHHHHhhhhhHHHHHhhhhhCCCCcc
Q psy18087          2 SIWIESCIKET-LPPSTELESNLRNGIVLAKLGHYLDPEMVP   42 (74)
Q Consensus         2 k~WIe~vlge~-l~~~~~~~e~LkdGvvLckL~N~l~P~~v~   42 (74)
                      .+|.-..+... .+...+|...++||.++|.|++.+.|+.+|
T Consensus       174 L~W~n~~l~~~g~~~I~nF~~s~~DG~a~~aLi~~~~P~~~~  215 (275)
T 1aoa_A          174 LRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQK  215 (275)
T ss_dssp             HHHHHHHHHHTTCCCCSCSSTTTTTSHHHHHHHHHHSCCSCS
T ss_pred             HHHHHHHHHhcCCCcchhhhhhhhhhHHHHHHHHHHCCCccc
Confidence            47888776432 222568988999999999999999998654

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=94.70  E-value=0.014  Score=45.89  Aligned_cols=47  Identities=15%  Similarity=0.332  Sum_probs=36.4

Q ss_pred             ChhHHHHHhccCCC--CchHHHHhhhhhHHHHHhhhhhCCCCcccccccC
Q psy18087          1 MSIWIESCIKETLP--PSTELESNLRNGIVLAKLGHYLDPEMVPESKIYD   48 (74)
Q Consensus         1 ik~WIe~vlge~l~--~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~   48 (74)
                      +..|.-..+. ..+  +..+|-.+++||.++|.|++.+.|+.++...+..
T Consensus       126 ll~W~~~~~~-~~~~~~v~nf~~s~~dg~~~~~li~~~~p~~~~~~~~~~  174 (863)
T 1sjj_A          126 LLLWYQRKTA-PYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRK  174 (863)
T ss_dssp             THHHHHHHHT-TSTTCCCCSSSGGGTTSHHHHHHHHTTCCSSSCSGGGGS
T ss_pred             HHHHHHHhcc-CCCCCCCCCCccccccHHHHHHHHHHhCCCCcChhhCCC
Confidence            3579987763 221  3558999999999999999999999998665543

>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1

Probab=94.65  E-value=0.0091  Score=37.98  Aligned_cols=46  Identities=11%  Similarity=0.285  Sum_probs=35.4

Q ss_pred             hhHHHHHhccC-CCCchHHHHhhhhhHHHHHhhhhhCCCCccccccc
Q psy18087          2 SIWIESCIKET-LPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIY   47 (74)
Q Consensus         2 k~WIe~vlge~-l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~   47 (74)
                      .+|....+..- --...+|-.+.+||.++|-|++.+.|+.++...+.
T Consensus        14 L~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~~~l~   60 (118)
T 1bhd_A           14 LSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVV   60 (118)
T ss_dssp             HHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHH
T ss_pred             HHHHHHHhccCCCCCCCCCcccccCcHHHHHHHHHHCcCcCCHHHhC
Confidence            47999888521 11355899999999999999999999988654443

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A

Probab=94.52  E-value=0.011  Score=41.18  Aligned_cols=39  Identities=31%  Similarity=0.501  Sum_probs=31.1

Q ss_pred             hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcc
Q psy18087          2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVP   42 (74)
Q Consensus         2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~   42 (74)
                      .+|....+.. . ...+|...++||.++|.|++.+.|+.+|
T Consensus       149 L~W~~~~~~~-~-~v~nFs~s~~dG~a~~aLi~~~~P~~i~  187 (245)
T 2wa7_A          149 LGWIQNKIPY-L-PITNFNQNWQDGKALGALVDSCAPGLCP  187 (245)
T ss_dssp             HHHHHHHSTT-S-CCCCSSGGGTTSHHHHHHHHHHSTTSST
T ss_pred             HHHHHHhCCC-C-CCCCCcccchhhHHHHHHHHHHCccccc
Confidence            4688876642 2 3457888999999999999999999874

>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A

Probab=93.88  E-value=0.016  Score=40.34  Aligned_cols=45  Identities=13%  Similarity=0.315  Sum_probs=34.5

Q ss_pred             hhHHHHHhccC-CCCchHHHHhhhhhHHHHHhhhhhCCCCcccccc
Q psy18087          2 SIWIESCIKET-LPPSTELESNLRNGIVLAKLGHYLDPEMVPESKI   46 (74)
Q Consensus         2 k~WIe~vlge~-l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI   46 (74)
                      .+|....+..- --...+|...++||.++|.|++.+.|+.++...+
T Consensus       141 L~W~~~~~~~~~~~~i~nFs~s~~DG~a~~aLi~~~~P~li~~~~~  186 (246)
T 1dxx_A          141 LSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDWNSV  186 (246)
T ss_dssp             HHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHH
T ss_pred             HHHHHHHhccCCCCCcCCCcccchhHHHHHHHHHHHCcCccchhhh
Confidence            47888777531 1135578899999999999999999998865444

>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A

Probab=92.05  E-value=0.047  Score=40.10  Aligned_cols=39  Identities=31%  Similarity=0.501  Sum_probs=30.4

Q ss_pred             hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcc
Q psy18087          2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVP   42 (74)
Q Consensus         2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~   42 (74)
                      .+|....+.. . +..+|-.+.+||.++|.|++.+.|+.+|
T Consensus       146 L~W~~~~~~~-~-~v~nF~~sw~DG~af~aLi~~~~P~~~~  184 (347)
T 4b7l_A          146 LGWIQNKIPY-L-PITNFNQNWQDGKALGALVDSCAPGLCP  184 (347)
T ss_dssp             HHHHHHHCTT-S-CCCCSSGGGTTSHHHHHHHHHHSTTSST
T ss_pred             HHHHHhhCCC-c-ccCCCCCCccchHHHHHHHHHhCCcccc
Confidence            4687765521 2 3457889999999999999999999875

>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A

Probab=91.60  E-value=0.057  Score=38.69  Aligned_cols=39  Identities=26%  Similarity=0.477  Sum_probs=30.0

Q ss_pred             hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcc
Q psy18087          2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVP   42 (74)
Q Consensus         2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~   42 (74)
                      .+|....+. .. +..+|....+||.++|.|++.+.|+.+|
T Consensus       176 L~W~n~~~~-~~-~I~nFs~sw~DG~af~aLi~~~~P~li~  214 (272)
T 3hoc_A          176 LGWIQNKLP-QL-PITNFSRDWQSGRALGALVDSCAPGLCP  214 (272)
T ss_dssp             HHHHHHHCT-TS-CCCCSSGGGTTSHHHHHHHHHHSTTSST
T ss_pred             HHHHHhhCC-CC-CCCChhhcccchHHHHHHHHHhCccccc
Confidence            467776542 11 3447888999999999999999999884

>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}

Probab=91.56  E-value=0.048  Score=39.59  Aligned_cols=61  Identities=13%  Similarity=0.284  Sum_probs=39.9

Q ss_pred             hhHHHHHhccC-CCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccc
Q psy18087          2 SIWIESCIKET-LPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEML   64 (74)
Q Consensus         2 k~WIe~vlge~-l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~   64 (74)
                      ..|....+..- --...+|....+||.++|.|++.+.|+.++...+...  .....-.+.|.++
T Consensus       195 L~W~n~~~~~y~~v~I~nFs~sw~DG~af~aLI~~~~P~lid~~~l~~~--~~~~N~~~Af~~A  256 (296)
T 3f7p_A          195 LLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPLLIDMNKVYRQ--TNLENLDQAFSVA  256 (296)
T ss_dssp             HHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHHHCGGGCCHHHHTTS--CHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCcCCCccccccccHHHHHHHHHHCcCccCHHHcCcc--cHHHHHHHHHHHH
Confidence            46888777531 1134578899999999999999999998864444322  2222334445554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	74
d1p2xa_	159	a.40.1.1 (A:) Ras GTPase-activating-like protein r	3e-07
d1ujoa_	144	a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [Ta	2e-06
d1h67a_	108	a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [T	4e-06

>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 159

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Ras GTPase-activating-like protein rng2
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.7 bits (100), Expect = 3e-07
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 4  WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVP 42
          WIE C+   L P++  E +LRNG+VLA L     P+ + 
Sbjct: 19 WIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLI 57

>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]} Length = 144

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Transgelin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.3 bits (94), Expect = 2e-06
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 4  WIESCIKETLPPSTELESN----LRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAE 59
          WI       +             L+NG++L+KL + L PE     K+ +   ++  +  E
Sbjct: 17 WIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVPENPPSMVFKQME 76

>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 108

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Calponin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.7 bits (90), Expect = 4e-06
 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 4  WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPE 43
          WIE      +         L++G++L +L + L P  V +
Sbjct: 11 WIEGATGRRIGD--NFMDGLKDGVILCELINKLQPGSVQK 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	74
d1h67a_	108	Calponin {Chicken (Gallus gallus) [TaxId: 9031]}	99.8
d1ujoa_	144	Transgelin {Mouse (Mus musculus) [TaxId: 10090]}	99.73
d1p2xa_	159	Ras GTPase-activating-like protein rng2 {Fission y	99.68
d1aoaa1	131	Fimbrin (Plastin), actin-crosslinking domain {Huma	98.41
d2qjza1	120	Microtubule-associated protein eb1, N-terminal mic	97.96
d1wjoa_	124	Fimbrin (Plastin), actin-crosslinking domain {Huma	97.93
d1sh5a1	120	Actin binding domain of plectin {Human (Homo sapie	97.67
d1rt8a_	505	Fimbrin (Plastin), actin-crosslinking domain {Fiss	97.63
d1dxxa1	111	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	97.59
d1pxya_	500	Fimbrin (Plastin), actin-crosslinking domain {Thal	97.55
d1aoaa2	116	Fimbrin (Plastin), actin-crosslinking domain {Huma	97.42
d1rt8a_	505	Fimbrin (Plastin), actin-crosslinking domain {Fiss	97.37
d1pxya_	500	Fimbrin (Plastin), actin-crosslinking domain {Thal	96.66
d1bkra_	108	beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}	96.65
d1sh5a2	110	Actin binding domain of plectin {Human (Homo sapie	96.59
d1dxxa2	127	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	96.49
d1bhda_	108	Utrophin {Human (Homo sapiens) [TaxId: 9606]}	96.35

>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Calponin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.80  E-value=3.1e-21  Score=122.73  Aligned_cols=56  Identities=21%  Similarity=0.438  Sum_probs=50.8

Q ss_pred             ChhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087          1 MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         1 ik~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      ++.|||+++|+++++  +|+++|||||+||+|+|+|+||+++  ||+        .++++|+++|||+
T Consensus         8 ~~~Wie~~~~~~~~~--~~~~~L~dGv~LC~L~N~l~pg~i~--ki~--------~~~~~f~~~eNI~   63 (108)
T d1h67a_           8 LRVWIEGATGRRIGD--NFMDGLKDGVILCELINKLQPGSVQ--KVN--------DPVQNWHKLENIG   63 (108)
T ss_dssp             HHHHHHHHHSCCCCS--CHHHHHHHCSHHHHHHHHHSTTSST--TCC--------CTTSSHHHHHHHH
T ss_pred             HHHHHHHHhCCCCch--HHHHHHcCchhHHHHHHHHHhcCCC--ccC--------CCcchhHHHHHHH
Confidence            478999999999986  8999999999999999999999996  666        5688999999985

>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Transgelin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=3e-19  Score=118.27  Aligned_cols=62  Identities=19%  Similarity=0.221  Sum_probs=51.6

Q ss_pred             ChhHHHHHhccCCCC----chHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087          1 MSIWIESCIKETLPP----STELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         1 ik~WIe~vlge~l~~----~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      +++||++++|+++.+    .++|+++|||||+||+|+|+|+|+.++  +|.    ..++.+.++|++||||+
T Consensus        14 ~~~WI~~~~g~~~~~~~~~~~~f~~~L~dGvvLCkL~N~l~P~~i~--~~~----~~~~~~~~~f~~~eNI~   79 (144)
T d1ujoa_          14 LVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSK--PVK----VPENPPSMVFKQMEQVA   79 (144)
T ss_dssp             HHHHHHHHHCTTTCCCCSSSSSHHHHTTSSHHHHHHHHHHSCTTTC--CSC----CCSSCCCSHHHHHHHHH
T ss_pred             HHHHHHHHhCCccCCCCccHHHHHHHHhcChhHHHHHHHHcCCCCC--Ccc----ccCCCcchhHHHHHHHH
Confidence            368999999999953    347999999999999999999999986  443    23346789999999986

>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Ras GTPase-activating-like protein rng2
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.68  E-value=6.6e-18  Score=111.86  Aligned_cols=59  Identities=31%  Similarity=0.538  Sum_probs=52.1

Q ss_pred             ChhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087          1 MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         1 ik~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      +++||++++++++++..+|.+.|||||+||+|+|+|.|+.++  +++.       .+.++|++++||+
T Consensus        16 ~~~Wi~~~l~~~~~~~~dl~~~L~dGv~Lc~L~n~l~p~~i~--~~~~-------~~~~~~~~~eNi~   74 (159)
T d1p2xa_          16 AKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLI--KIFY-------SNELQFRHSDNIN   74 (159)
T ss_dssp             HHHHHHHHHTSCCCCGGGHHHHTTTSHHHHHHHHHHCTTSCC--CCCC-------CSSCCTTHHHHHH
T ss_pred             HHHHHHHHhCCCCCChhHHHHHHhhHHHHHHHHHHHCCCCCc--eecC-------CCcchHHHHHHHH
Confidence            478999999999998889999999999999999999999986  6653       3467899999985

>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1.7e-07  Score=59.28  Aligned_cols=52  Identities=23%  Similarity=0.434  Sum_probs=41.2

Q ss_pred             hhHHHHHhccCC---------CCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCccc
Q psy18087          2 SIWIESCIKETL---------PPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAV   53 (74)
Q Consensus         2 k~WIe~vlge~l---------~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~   53 (74)
                      .+||-..+.+.-         ++..+|.+.|+||++||+|++.+.|+.++.++++..+..+
T Consensus        10 ~~WiN~~L~~~~~~~~~~~~~~~v~dL~~Dl~DGv~L~~Lle~l~~~~i~~~~~~~~p~~~   70 (131)
T d1aoaa1          10 VNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTP   70 (131)
T ss_dssp             HHHHHHHTTTCTTSTTTCSCCTTTTHHHHHGGGSHHHHHHHHHHSTTSSCGGGSCCSSCCH
T ss_pred             HHHHHHHhccCccccccCCCCCcHhHHHHHHhhHHHHHHHHHHHcCCCCcchhccCCCcCH
Confidence            479999888742         2467899999999999999999999998755566555433

>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Microtubule-associated protein eb1, N-terminal microtubule binding domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=4e-06  Score=53.34  Aligned_cols=45  Identities=18%  Similarity=0.268  Sum_probs=38.9

Q ss_pred             hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCC
Q psy18087          2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDAD   50 (74)
Q Consensus         2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~   50 (74)
                      ..||-+.|+.++...++    |.+|++.|.|++.+.||++|++||.-.+
T Consensus         9 L~WiN~~L~~~~~kiEe----l~tGa~yCQl~d~l~Pg~i~l~kVkf~a   53 (120)
T d2qjza1           9 LAWINESLQLNLTKIEQ----LCSGAAYCQFMDMLFPGSIALKKVKFQA   53 (120)
T ss_dssp             HHHHHHHHTCCCCCGGG----GGGSHHHHHHHHHHSTTSSCGGGCCTTC
T ss_pred             HHHHHHHhCCChhhHHH----hcccHHHHHHHHHHCcCcchHhhhccCC
Confidence            57999999988877544    8999999999999999999999986433

>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=1.8e-06  Score=53.84  Aligned_cols=49  Identities=8%  Similarity=0.258  Sum_probs=37.8

Q ss_pred             hhHHHHHhccCC--CCchHHH-HhhhhhHHHHHhhhhhCCCCcccccccCCC
Q psy18087          2 SIWIESCIKETL--PPSTELE-SNLRNGIVLAKLGHYLDPEMVPESKIYDAD   50 (74)
Q Consensus         2 k~WIe~vlge~l--~~~~~~~-e~LkdGvvLckL~N~l~P~~v~~kkI~~~~   50 (74)
                      .+|+-..+.+.-  ....+|. ..|+||++||.|++++.|+.++.++++..+
T Consensus        13 l~WvN~~L~~~g~~~~i~~f~d~dl~DG~~L~~Ll~~l~p~~i~~~~~~~~~   64 (124)
T d1wjoa_          13 VNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGN   64 (124)
T ss_dssp             HHHHHHHHHHHTCSCCCSCTTCTTGGGTHHHHHHHHHHSTTSCCTTTSCCSS
T ss_pred             HHHHHHHHHHcCCCCCcCcCCccccccHHHHHHHHHHHHhccCCHHhcccCC
Confidence            579987775522  2345787 589999999999999999999876776555

>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=3.2e-06  Score=52.15  Aligned_cols=41  Identities=22%  Similarity=0.410  Sum_probs=33.8

Q ss_pred             hhHHHHHhccCC-----CCchHHHHhhhhhHHHHHhhhhhCCCCcc
Q psy18087          2 SIWIESCIKETL-----PPSTELESNLRNGIVLAKLGHYLDPEMVP   42 (74)
Q Consensus         2 k~WIe~vlge~l-----~~~~~~~e~LkdGvvLckL~N~l~P~~v~   42 (74)
                      .+||-+.|.+.-     ++..+|.+.|+||++||+|++.+.|+.++
T Consensus        11 t~WiN~~L~~~~~~~~~~~V~dl~~dl~DG~~L~~Lle~l~~~~~~   56 (120)
T d1sh5a1          11 TKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLP   56 (120)
T ss_dssp             HHHHHHHHTTCSSGGGCCCCSCTTTTTTTSHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHccccccccCCCCcchHHHHhccHHHHHHHHHHhCCCccc
Confidence            369999987642     23568999999999999999999998775

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.63  E-value=1.1e-05  Score=59.92  Aligned_cols=63  Identities=17%  Similarity=0.286  Sum_probs=45.8

Q ss_pred             hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087          2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      ..||-+.+-++  ...+|.+.|+||++||+|..++.|+.++++++...+.  .+...+.|..++|++
T Consensus       283 ~~WiNs~l~~~--~I~dL~~Dl~DG~~L~~Lle~l~~~~~~~~~~~~~~~--~~~~~~r~~~ieN~~  345 (505)
T d1rt8a_         283 TLWLNSLDVTP--SIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPA--SGDEMMRFKAVENCN  345 (505)
T ss_dssp             HHHHHHTTCSS--CCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGSCCCCT--TSCCCCHHHHHHHHH
T ss_pred             HHHHhccCCCC--cHHHHHhccccHHHHHHHHHHhCCCCcCchhcccccc--cccchhHHHHHHHHH
Confidence            47999876543  4568999999999999999999999987667665432  223445566666653

>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=1.2e-05  Score=48.85  Aligned_cols=41  Identities=22%  Similarity=0.309  Sum_probs=34.1

Q ss_pred             hhHHHHHhccC-CCCchHHHHhhhhhHHHHHhhhhhCCCCcc
Q psy18087          2 SIWIESCIKET-LPPSTELESNLRNGIVLAKLGHYLDPEMVP   42 (74)
Q Consensus         2 k~WIe~vlge~-l~~~~~~~e~LkdGvvLckL~N~l~P~~v~   42 (74)
                      .+||-..|.+. .+...+|.+.|+||++||+|.+.+.|..+|
T Consensus        14 t~WiN~~L~~~~~~~i~nl~~Dl~DG~~L~~Lle~l~~~~~~   55 (111)
T d1dxxa1          14 TKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLP   55 (111)
T ss_dssp             HHHHHHHHHHTTCCCCSCTTTTTTTSHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHccccCCcchhhHHHHhcchHHHHHHHHHHcCCcCC
Confidence            36999988653 344568999999999999999999998776

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.55  E-value=1.4e-05  Score=59.58  Aligned_cols=61  Identities=23%  Similarity=0.269  Sum_probs=43.0

Q ss_pred             hhHHHHHhccC--------CC-CchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087          2 SIWIESCIKET--------LP-PSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         2 k~WIe~vlge~--------l~-~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      .+||-+.|.+.        ++ ...+|.+.|+||++||+|.+.+.|+.++.+.++..      ..-..|..++|++
T Consensus         7 t~WiN~~L~~~~~~~~~lpi~~~v~dL~~dl~DG~~L~~Lle~ls~~~l~~~~~~~~------~~~~r~~~~eN~~   76 (500)
T d1pxya_           7 VQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTK------RVLNPWERNENHT   76 (500)
T ss_dssp             HHHHHHHHTTCTTTTTTCSCCTTSSHHHHHSTTSHHHHHHHHHHSTTSSCGGGSCCC------SSCCHHHHHHHHH
T ss_pred             HHHHHHHhccCccccccCCCCCcHHHHHHHhhhHHHHHHHHHHHcCCccchhhhcCC------CCccHHHHHHHHH
Confidence            37999999875        22 35689999999999999999999988763333322      1223455666643

>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=2.2e-05  Score=47.42  Aligned_cols=41  Identities=7%  Similarity=0.174  Sum_probs=34.3

Q ss_pred             hhHHHHHhccCC-CCchHHHHhhhhhHHHHHhhhhhCCCCcc
Q psy18087          2 SIWIESCIKETL-PPSTELESNLRNGIVLAKLGHYLDPEMVP   42 (74)
Q Consensus         2 k~WIe~vlge~l-~~~~~~~e~LkdGvvLckL~N~l~P~~v~   42 (74)
                      .+|+-..+.+.- .+..+|.+.++||++||.|++++.|+.++
T Consensus        15 L~WvN~~l~~~~~~~I~nf~~dl~DG~~L~~Ll~~~~p~~~~   56 (116)
T d1aoaa2          15 LRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQK   56 (116)
T ss_dssp             HHHHHHHHHHTTCCCCSCSSTTTTTSHHHHHHHHHHSCCSCS
T ss_pred             HHHHHHHhccCCCceeeeccccccccHHHHHHHHHHCccccc
Confidence            479998886532 24668999999999999999999998876

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.37  E-value=5.5e-05  Score=56.00  Aligned_cols=63  Identities=16%  Similarity=0.235  Sum_probs=42.4

Q ss_pred             hHHHHHhccCC--------C-CchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087          3 IWIESCIKETL--------P-PSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ   68 (74)
Q Consensus         3 ~WIe~vlge~l--------~-~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~   68 (74)
                      +||-..|.+.-        + ...++.+.|+||++||+|.+.+.|+.+..+.++....   ....+.|..++|++
T Consensus        11 ~WiN~~L~~~~~l~~~~p~~~~v~dL~~dl~DG~~L~~Lle~l~~~~i~~~~l~~~~~---~~~~~~~~~leNv~   82 (505)
T d1rt8a_          11 KHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRN---NKPLDNFKCIENNN   82 (505)
T ss_dssp             HHHHHHHTTCTTTGGGCSCCTTSTHHHHHTTTSHHHHHHHHHHSTTSSCGGGSCCCC------CCCHHHHHHHHH
T ss_pred             HHHHHHhccCccccccCCCCcchhhHHHHHhhHHHHHHHHHHHcCCCcchhhhccccc---ccchhhhhHHHHHH
Confidence            69998887642        2 3558999999999999999999998775444442211   12234555556553

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.66  E-value=0.00031  Score=52.07  Aligned_cols=45  Identities=20%  Similarity=0.296  Sum_probs=34.8

Q ss_pred             hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccC
Q psy18087          2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYD   48 (74)
Q Consensus         2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~   48 (74)
                      ..||-++.-+  +...+|.+.|+||++||+|+..+.|+.++.++.+.
T Consensus       276 ~~WiNs~~~~--~~V~dL~~dl~DG~~L~~Lle~l~~~~~~~~~~~~  320 (500)
T d1pxya_         276 RLWINSLGID--SYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASK  320 (500)
T ss_dssp             HHHHTTTTCS--SCCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGCCC
T ss_pred             HHHHhccCCC--CCcchHHHHHhhhHHHHHHHHHhcCCCCChhhcCC
Confidence            3588876322  23568999999999999999999999887655543

>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: beta-spectrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.00028  Score=42.68  Aligned_cols=47  Identities=15%  Similarity=0.281  Sum_probs=36.2

Q ss_pred             hhHHHHHhccC-CCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccC
Q psy18087          2 SIWIESCIKET-LPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYD   48 (74)
Q Consensus         2 k~WIe~vlge~-l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~   48 (74)
                      .+|+.+++..- --+..+|-...+||.++|.|++.+.|+.++...+..
T Consensus         8 L~W~~~~~~~y~~v~V~nFs~sw~DG~af~aLi~~~~P~~~~~~~l~~   55 (108)
T d1bkra_           8 LLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKK   55 (108)
T ss_dssp             HHHHHHHTTTCTTCCCSSSSGGGTTSHHHHHHHHHHCGGGCCGGGCCT
T ss_pred             HHHHHHHhcCCCCcCcccCCCcccCcHHHHHHHHHHCcCcccHHhccc
Confidence            57999888431 114558999999999999999999998887555543

>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00033  Score=42.75  Aligned_cols=46  Identities=15%  Similarity=0.399  Sum_probs=35.7

Q ss_pred             hhHHHHHhccCCC-CchHHHHhhhhhHHHHHhhhhhCCCCccccccc
Q psy18087          2 SIWIESCIKETLP-PSTELESNLRNGIVLAKLGHYLDPEMVPESKIY   47 (74)
Q Consensus         2 k~WIe~vlge~l~-~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~   47 (74)
                      ..|..+++..--+ ...+|-...+||.++|.|++.+.|+.++...+.
T Consensus        12 L~W~~~~~~~y~~v~v~nFs~sw~DG~afcaLih~~~P~~id~~~l~   58 (110)
T d1sh5a2          12 LLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVY   58 (110)
T ss_dssp             HHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHTTCTTTCCHHHHH
T ss_pred             HHHHHHHcCCCCCeeccCCcccccCcHHHHHHHHHHCcccCChhhcC
Confidence            5799988853211 456899999999999999999999988654443

>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.00031  Score=43.84  Aligned_cols=44  Identities=16%  Similarity=0.419  Sum_probs=34.9

Q ss_pred             hhHHHHHhccCCC--CchHHHHhhhhhHHHHHhhhhhCCCCcccccc
Q psy18087          2 SIWIESCIKETLP--PSTELESNLRNGIVLAKLGHYLDPEMVPESKI   46 (74)
Q Consensus         2 k~WIe~vlge~l~--~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI   46 (74)
                      .+|...++.. .|  ...+|-...+||.++|.|++.+.|+.++..++
T Consensus        22 L~W~~~~~~~-y~~v~v~NFs~sw~DG~a~~aLih~~~P~li~~~~~   67 (127)
T d1dxxa2          22 LSWVRQSTRN-YPQVNVINFTTSWSDGLALNALIHSHRPDLFDWNSV   67 (127)
T ss_dssp             HHHHHHHHTT-CTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHH
T ss_pred             HHHHHHHhcc-CCCccccCCccccccHHHHHHHHHHHCcccccchhh
Confidence            5799988843 22  35589999999999999999999998874443

>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Utrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.00035  Score=42.30  Aligned_cols=47  Identities=11%  Similarity=0.283  Sum_probs=36.6

Q ss_pred             hhHHHHHhccC-CCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccC
Q psy18087          2 SIWIESCIKET-LPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYD   48 (74)
Q Consensus         2 k~WIe~vlge~-l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~   48 (74)
                      .+|..+++..- --+..+|-...+||.+||.|++.+.|+.++...+..
T Consensus        11 L~W~~~~~~~y~~v~v~nFs~sw~DG~a~caLih~~~P~~i~~~~l~~   58 (108)
T d1bhda_          11 LSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVVK   58 (108)
T ss_dssp             HHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHHH
T ss_pred             HHHHHHHhccCCCcCcccCccccccchHHHHHHHHHCccccChhhcCc
Confidence            47999888541 114558999999999999999999999887655543