Psyllid ID: psy18121

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MAVLTNMNLTSQSQVHLARSLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVYFNITYPGLSMAIRKAQWLIK
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHHHHHccEEcccccccccccccccccccccEEEEcccccccccccccccccEEEEEccEEEEEEEcccccHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHEEcccccccccHHHHHHHHHHHHHHHHcccEEcccccHHcccccccccccccEEEEEEcccccccHHHcccccccccccHHEEEEEEcccccHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mavltnmnltsqSQVHLARSLERILEEAHLsgelnlsgrklkdfpnsggkydlsdSVIVVYFSrsgrklkdfpnsggkydlsdSVIVVYFNITYPGLSMAIRKAQWLIK
Flexible Loop (DISEMBL)
mavltnmnltsqsqVHLARSLERILEEAHlsgelnlsgrklkdfpnsggkydlsdsVIVVYFSRsgrklkdfpnsggkydlsdSVIVVYFNITYPGLSMAIRKAQWLIK
Low Complexity Region (SEG)
MAVLTNMNLTSQSQVHLARSLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVYFNITYPGLSMAIRKAQWLIK
Disordered region (IsUnstruct)
************************************************GKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVYFNITYPGLSMAIRKAQWLI*
Disordered Region (DISOPRED)
***********************ILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVYFNITYPGLSMAIRKAQWLIK
Disordered Region (DISEMBL)
MAVLTNMNLTSQSQVHLARSLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVYFNITYPGLSMAIRKAQWLIK
Disordered Region (DISPRO)
******M**TSQSQ*HLARSLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVYFNITYPGLSMAIRKAQWLIK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAVLTNMNLTSQSQVHLARSLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVYFNITYPGLSMAIRKAQWLIK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	109	2.2.26 [Sep-21-2011]
Q5VUJ6	765	Leucine-rich repeat and c	yes	N/A	0.366	0.052	0.642	1e-06
Q96II8	777	Leucine-rich repeat and c	no	N/A	0.357	0.050	0.538	3e-06
Q3UMG5	773	Leucine-rich repeat and c	yes	N/A	0.366	0.051	0.619	4e-06
Q9Y2L9	728	Leucine-rich repeat and c	no	N/A	0.376	0.056	0.619	9e-06
Q8BVU0	778	Leucine-rich repeat and c	no	N/A	0.357	0.050	0.512	9e-06
P62046	709	Leucine-rich repeat and c	no	N/A	0.376	0.057	0.619	1e-05
Q921G6	680	Leucine-rich repeat and c	no	N/A	0.348	0.055	0.589	0.0001
O75427	683	Leucine-rich repeat and c	no	N/A	0.339	0.054	0.605	0.0001

>sp|Q5VUJ6|LRCH2_HUMAN Leucine-rich repeat and calponin homology domain-containing protein 2 OS=Homo sapiens GN=LRCH2 PE=2 SV=2

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 32/42 (76%), Gaps = 2/42 (4%)

Query: 16  HLARSLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDSV 57
           H  RSL+R LEEA  SG L+LSGRKL+DFP SG  YDL+D+ 
Sbjct: 75  HTVRSLDRALEEAGSSGILSLSGRKLRDFPGSG--YDLTDTT 114

Homo sapiens (taxid: 9606)

>sp|Q96II8|LRCH3_HUMAN Leucine-rich repeat and calponin homology domain-containing protein 3 OS=Homo sapiens GN=LRCH3 PE=1 SV=2

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/39 (53%), Positives = 31/39 (79%)

Query: 18 ARSLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDS 56
          +RSL+R LEEA ++G L+LSGRKL++FP     +DL+D+
Sbjct: 46 SRSLDRALEEAAVTGVLSLSGRKLREFPRGAANHDLTDT 84

Homo sapiens (taxid: 9606)

>sp|Q3UMG5|LRCH2_MOUSE Leucine-rich repeat and calponin homology domain-containing protein 2 OS=Mus musculus GN=Lrch2 PE=2 SV=2

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%), Gaps = 2/42 (4%)

Query: 16  HLARSLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDSV 57
           H  RSL+R LEEA  SG L+LSGRKL++FP SG  YDL+D+ 
Sbjct: 83  HTVRSLDRALEEAGNSGILSLSGRKLREFPGSG--YDLTDTT 122

Mus musculus (taxid: 10090)

>sp|Q9Y2L9|LRCH1_HUMAN Leucine-rich repeat and calponin homology domain-containing protein 1 OS=Homo sapiens GN=LRCH1 PE=1 SV=3

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 17  LARSLERILEEAHLSGELNLSGRKLKDFPNSGGK-YDLSDSV 57
           L R LER LEEA  SG LNLS RKLK+FP +    +DLSD+V
Sbjct: 59  LNRGLERALEEAANSGGLNLSARKLKEFPRTAAPGHDLSDTV 100

Homo sapiens (taxid: 9606)

>sp|Q8BVU0|LRCH3_MOUSE Leucine-rich repeat and calponin homology domain-containing protein 3 OS=Mus musculus GN=Lrch3 PE=2 SV=3

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 31/39 (79%)

Query: 18 ARSLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDS 56
          +RS++R LEEA ++G L+LSGRKL++FP     +DL+D+
Sbjct: 46 SRSVDRALEEAAVTGVLSLSGRKLREFPRGAANHDLTDT 84

Mus musculus (taxid: 10090)

>sp|P62046|LRCH1_MOUSE Leucine-rich repeat and calponin homology domain-containing protein 1 OS=Mus musculus GN=Lrch1 PE=1 SV=2

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 17 LARSLERILEEAHLSGELNLSGRKLKDFPNSGGK-YDLSDSV 57
          L R LER LEEA  SG LNLS RKLK+FP +    +DLSD+V
Sbjct: 49 LNRGLERALEEAANSGGLNLSARKLKEFPRTTAPGHDLSDTV 90

Mus musculus (taxid: 10090)

>sp|Q921G6|LRCH4_MOUSE Leucine-rich repeat and calponin homology domain-containing protein 4 OS=Mus musculus GN=Lrch4 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 18 ARSLERILEEAHLSGELNLSGRKLKDFPNSGGK-YDLSD 55
          +RS ER LEEA  +G LNLS R+LK FP    + YDLSD
Sbjct: 31 SRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSD 69

Mus musculus (taxid: 10090)

>sp|O75427|LRCH4_HUMAN Leucine-rich repeat and calponin homology domain-containing protein 4 OS=Homo sapiens GN=LRCH4 PE=1 SV=2

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/38 (60%), Positives = 26/38 (68%), Gaps = 1/38 (2%)

Query: 19 RSLERILEEAHLSGELNLSGRKLKDFPNSGGK-YDLSD 55
          RS ER LEEA  +G LNLS R+LK FP    + YDLSD
Sbjct: 32 RSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSD 69

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
242024054	85	hypothetical protein Phum_PHUM584210 [Pe	0.559	0.717	0.677	7e-14
312375689	152	hypothetical protein AND_13841 [Anophele	0.422	0.302	0.760	3e-12
158299038	700	AGAP010012-PA [Anopheles gambiae str. PE	0.394	0.061	0.790	2e-11
322780036	62	hypothetical protein SINV_05952 [Solenop	0.532	0.935	0.603	7e-11
380012198	730	PREDICTED: leucine-rich repeat and calpo	0.522	0.078	0.612	2e-10
66500629	758	PREDICTED: leucine-rich repeat and calpo	0.522	0.075	0.612	2e-10
350425067	757	PREDICTED: leucine-rich repeat and calpo	0.467	0.067	0.654	2e-10
340709272	826	PREDICTED: hypothetical protein LOC10064	0.477	0.062	0.642	2e-10
332029861	753	Leucine-rich repeat and calponin-like pr	0.522	0.075	0.612	2e-10
383865043	756	PREDICTED: leucine-rich repeat and calpo	0.660	0.095	0.493	5e-10

>gi|242024054|ref|XP_002432445.1| hypothetical protein Phum_PHUM584210 [Pediculus humanus corporis] gi|212517878|gb|EEB19707.1| hypothetical protein Phum_PHUM584210 [Pediculus humanus corporis]

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 49/62 (79%), Gaps = 1/62 (1%)

Query: 14 QVHLARSLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDSVIVVY-FSRSGRKLKDF 72
          Q  L +SLERILEEAHLSGEL LSGRKLKDFP SGGKYDLSD+VI  + +SR+  K  ++
Sbjct: 6  QNQLTKSLERILEEAHLSGELKLSGRKLKDFPKSGGKYDLSDTVIADFNYSRNFDKQCEY 65

Query: 73 PN 74
           N
Sbjct: 66 IN 67

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312375689|gb|EFR23010.1| hypothetical protein AND_13841 [Anopheles darlingi]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/46 (76%), Positives = 39/46 (84%)

Query: 14 QVHLARSLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDSVIV 59
          Q  L RSLERILE+AHLSGEL LSGRKLKDFP + GKY+LSD+VI 
Sbjct: 47 QSQLTRSLERILEDAHLSGELKLSGRKLKDFPKAAGKYNLSDTVIA 92

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158299038|ref|XP_319156.4| AGAP010012-PA [Anopheles gambiae str. PEST] gi|157014176|gb|EAA13901.4| AGAP010012-PA [Anopheles gambiae str. PEST]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/43 (79%), Positives = 38/43 (88%)

Query: 16 HLARSLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDSVI 58
           L RSLERILE+AHLSGEL LSGRKLKDFP + GKY+LSD+VI
Sbjct: 2  QLTRSLERILEDAHLSGELKLSGRKLKDFPKAAGKYNLSDTVI 44

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322780036|gb|EFZ09796.1| hypothetical protein SINV_05952 [Solenopsis invicta]

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/63 (60%), Positives = 45/63 (71%), Gaps = 5/63 (7%)

Query: 1  MAVLTNMNLTSQSQVHLARSLERILEEAHLSGELNLSGRKLKDFPNSG----GKYDLSDS 56
          MA++ + N++   Q  L RSLERILEEAHLSGEL LSGRKLKDFP  G     KY+L D+
Sbjct: 1  MAMVAS-NMSGHIQKQLTRSLERILEEAHLSGELKLSGRKLKDFPKVGKAGTAKYNLQDT 59

Query: 57 VIV 59
          VI 
Sbjct: 60 VIA 62

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380012198|ref|XP_003690173.1| PREDICTED: leucine-rich repeat and calponin homology domain-containing protein 1-like [Apis florea]

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/62 (61%), Positives = 45/62 (72%), Gaps = 5/62 (8%)

Query: 1  MAVLTNMNLTSQSQVHLARSLERILEEAHLSGELNLSGRKLKDFPNSG----GKYDLSDS 56
          MA++ + N++   Q  L RSLERILEEAHLSGEL LSGRKLKDFP  G     KY+L D+
Sbjct: 1  MAMVAS-NMSGHIQKQLTRSLERILEEAHLSGELKLSGRKLKDFPKVGKTGSSKYNLQDT 59

Query: 57 VI 58
          VI
Sbjct: 60 VI 61

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66500629|ref|XP_392557.2| PREDICTED: leucine-rich repeat and calponin homology domain-containing protein 1-like [Apis mellifera]

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/62 (61%), Positives = 45/62 (72%), Gaps = 5/62 (8%)

Query: 1  MAVLTNMNLTSQSQVHLARSLERILEEAHLSGELNLSGRKLKDFPNSG----GKYDLSDS 56
          MA++ + N++   Q  L RSLERILEEAHLSGEL LSGRKLKDFP  G     KY+L D+
Sbjct: 1  MAMVAS-NMSGHIQKQLTRSLERILEEAHLSGELKLSGRKLKDFPKVGKTGSSKYNLQDT 59

Query: 57 VI 58
          VI
Sbjct: 60 VI 61

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350425067|ref|XP_003494001.1| PREDICTED: leucine-rich repeat and calponin homology domain-containing protein 1-like [Bombus impatiens]

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/55 (65%), Positives = 40/55 (72%), Gaps = 4/55 (7%)

Query: 8  NLTSQSQVHLARSLERILEEAHLSGELNLSGRKLKDFPNSG----GKYDLSDSVI 58
          N++   Q  L RSLERILEEAHLSGEL LSGRKLKDFP  G     KY+L D+VI
Sbjct: 7  NMSGHIQKQLTRSLERILEEAHLSGELKLSGRKLKDFPKVGKTGSSKYNLQDTVI 61

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709272|ref|XP_003393235.1| PREDICTED: hypothetical protein LOC100649436 [Bombus terrestris]

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/56 (64%), Positives = 40/56 (71%), Gaps = 4/56 (7%)

Query: 8  NLTSQSQVHLARSLERILEEAHLSGELNLSGRKLKDFPNSG----GKYDLSDSVIV 59
          N++   Q  L RSLERILEEAHLSGEL LSGRKLKDFP  G     KY+L D+VI 
Sbjct: 7  NMSGHIQKQLTRSLERILEEAHLSGELKLSGRKLKDFPKVGKTGSSKYNLQDTVIA 62

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029861|gb|EGI69730.1| Leucine-rich repeat and calponin-like proteiny domain-containing protein 3 [Acromyrmex echinatior]

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/62 (61%), Positives = 45/62 (72%), Gaps = 5/62 (8%)

Query: 1  MAVLTNMNLTSQSQVHLARSLERILEEAHLSGELNLSGRKLKDFPNSGG----KYDLSDS 56
          MA++ + N++   Q  L RSLERILEEAHLSGEL LSGRKLKDFP  G     KY+L D+
Sbjct: 1  MAMVAS-NMSGHIQKQLTRSLERILEEAHLSGELKLSGRKLKDFPKVGKAGVVKYNLQDT 59

Query: 57 VI 58
          VI
Sbjct: 60 VI 61

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865043|ref|XP_003707985.1| PREDICTED: leucine-rich repeat and calponin homology domain-containing protein 1-like [Megachile rotundata]

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 51/81 (62%), Gaps = 9/81 (11%)

Query: 1  MAVLTNMNLTSQSQVHLARSLERILEEAHLSGELNLSGRKLKDFPNSG----GKYDLSDS 56
          MA++ + N++   Q  L RSLERILEEAHLSGEL LSGRKLKDFP  G     KY+L D+
Sbjct: 1  MAMVAS-NMSGHIQKQLTRSLERILEEAHLSGELKLSGRKLKDFPKVGKPGSSKYNLQDT 59

Query: 57 VIV----VYFSRSGRKLKDFP 73
          V        F+    ++ +FP
Sbjct: 60 VFADLSKNRFAELPEEVTEFP 80

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
FB|FBgn0032633	1135	Lrch "Leucine-rich-repeats and	0.477	0.045	0.666	1.8e-10
MGI|MGI:2147870	773	Lrch2 "leucine-rich repeats an	0.357	0.050	0.634	2.6e-06
ZFIN|ZDB-GENE-071004-44	525	zgc:171915 "zgc:171915" [Danio	0.348	0.072	0.605	4.1e-06
UNIPROTKB|Q96II8	777	LRCH3 "Leucine-rich repeat and	0.357	0.050	0.538	1.9e-05
MGI|MGI:2443390	709	Lrch1 "leucine-rich repeats an	0.376	0.057	0.619	3.5e-05
MGI|MGI:1917394	778	Lrch3 "leucine-rich repeats an	0.357	0.050	0.512	3.9e-05
UNIPROTKB|F1MV58	658	LRCH4 "Uncharacterized protein	0.348	0.057	0.589	0.00011
RGD|1306145	686	Lrch4 "leucine-rich repeats an	0.348	0.055	0.589	0.00011
UNIPROTKB|F1RMY1	690	LRCH4 "Uncharacterized protein	0.348	0.055	0.589	0.00012
UNIPROTKB|O75427	683	LRCH4 "Leucine-rich repeat and	0.339	0.054	0.605	0.00015

FB|FBgn0032633 Lrch "Leucine-rich-repeats and calponin homology domain protein" [Drosophila melanogaster (taxid:7227)]

 Score = 161 (61.7 bits), Expect = 1.8e-10, P = 1.8e-10
 Identities = 36/54 (66%), Positives = 41/54 (75%)

Query:     5 TNMNLTSQSQVHLARSLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDSVI 58
             T+  L S SQ  L RSLERILEEAH SGEL L+ RKLKDFP +G KY L+D+VI
Sbjct:    52 TSSALLSHSQ--LTRSLERILEEAHFSGELILTNRKLKDFPRTGTKYSLTDTVI 103

GO:0007265 "Ras protein signal transduction" evidence=ISS

GO:0005938 "cell cortex" evidence=IDA

GO:0032154 "cleavage furrow" evidence=IDA

MGI|MGI:2147870 Lrch2 "leucine-rich repeats and calponin homology (CH) domain containing 2" [Mus musculus (taxid:10090)]

 Score = 120 (47.3 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 26/41 (63%), Positives = 32/41 (78%)

Query:    16 HLARSLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDS 56
             H  RSL+R LEEA  SG L+LSGRKL++FP SG  YDL+D+
Sbjct:    83 HTVRSLDRALEEAGNSGILSLSGRKLREFPGSG--YDLTDT 121

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-071004-44 zgc:171915 "zgc:171915" [Danio rerio (taxid:7955)]

 Score = 116 (45.9 bits), Expect = 4.1e-06, P = 4.1e-06
 Identities = 23/38 (60%), Positives = 30/38 (78%)

Query:    19 RSLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDS 56
             RSL+R L+EA  +G LNLSGRKLK+FP S   +DL+D+
Sbjct:    46 RSLDRALDEAAATGGLNLSGRKLKEFPRSAAGHDLTDT 83

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q96II8 LRCH3 "Leucine-rich repeat and calponin homology domain-containing protein 3" [Homo sapiens (taxid:9606)]

 Score = 112 (44.5 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 21/39 (53%), Positives = 31/39 (79%)

Query:    18 ARSLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDS 56
             +RSL+R LEEA ++G L+LSGRKL++FP     +DL+D+
Sbjct:    46 SRSLDRALEEAAVTGVLSLSGRKLREFPRGAANHDLTDT 84

GO:0005576 "extracellular region" evidence=IEA

MGI|MGI:2443390 Lrch1 "leucine-rich repeats and calponin homology (CH) domain containing 1" [Mus musculus (taxid:10090)]

 Score = 109 (43.4 bits), Expect = 3.5e-05, P = 3.5e-05
 Identities = 26/42 (61%), Positives = 30/42 (71%)

Query:    17 LARSLERILEEAHLSGELNLSGRKLKDFPNSGGK-YDLSDSV 57
             L R LER LEEA  SG LNLS RKLK+FP +    +DLSD+V
Sbjct:    49 LNRGLERALEEAANSGGLNLSARKLKEFPRTTAPGHDLSDTV 90

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1917394 Lrch3 "leucine-rich repeats and calponin homology (CH) domain containing 3" [Mus musculus (taxid:10090)]

 Score = 109 (43.4 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 20/39 (51%), Positives = 31/39 (79%)

Query:    18 ARSLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDS 56
             +RS++R LEEA ++G L+LSGRKL++FP     +DL+D+
Sbjct:    46 SRSVDRALEEAAVTGVLSLSGRKLREFPRGAANHDLTDT 84

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005576 "extracellular region" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1MV58 LRCH4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 104 (41.7 bits), Expect = 0.00011, P = 0.00011
 Identities = 23/39 (58%), Positives = 27/39 (69%)

Query:    18 ARSLERILEEAHLSGELNLSGRKLKDFPNSGGK-YDLSD 55
             +RS ER LEEA  +G LNLS R+LK FP    + YDLSD
Sbjct:    31 SRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSD 69

GO:0016605 "PML body" evidence=IEA

RGD|1306145 Lrch4 "leucine-rich repeats and calponin homology (CH) domain containing 4" [Rattus norvegicus (taxid:10116)]

 Score = 104 (41.7 bits), Expect = 0.00011, P = 0.00011
 Identities = 23/39 (58%), Positives = 27/39 (69%)

Query:    18 ARSLERILEEAHLSGELNLSGRKLKDFPNSGGK-YDLSD 55
             +RS ER LEEA  +G LNLS R+LK FP    + YDLSD
Sbjct:    31 SRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSD 69

GO:0005737 "cytoplasm" evidence=ISO

GO:0016605 "PML body" evidence=IEA;ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

UNIPROTKB|F1RMY1 LRCH4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 104 (41.7 bits), Expect = 0.00012, P = 0.00012
 Identities = 23/39 (58%), Positives = 27/39 (69%)

Query:    18 ARSLERILEEAHLSGELNLSGRKLKDFPNSGGK-YDLSD 55
             +RS ER LEEA  +G LNLS R+LK FP    + YDLSD
Sbjct:    31 SRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSD 69

GO:0016605 "PML body" evidence=IEA

UNIPROTKB|O75427 LRCH4 "Leucine-rich repeat and calponin homology domain-containing protein 4" [Homo sapiens (taxid:9606)]

 Score = 103 (41.3 bits), Expect = 0.00015, P = 0.00015
 Identities = 23/38 (60%), Positives = 26/38 (68%)

Query:    19 RSLERILEEAHLSGELNLSGRKLKDFPNSGGK-YDLSD 55
             RS ER LEEA  +G LNLS R+LK FP    + YDLSD
Sbjct:    32 RSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSD 69


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.134   0.378    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      109       109   0.00091  102 3  11 22  0.45    30
                                                     29  0.41    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  532 (57 KB)
  Total size of DFA:  101 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:02
  No. of threads or processors used:  24
  Search cpu time:  11.95u 0.09s 12.04t   Elapsed:  00:00:13
  Total cpu time:  11.95u 0.09s 12.04t   Elapsed:  00:00:15
  Start:  Thu Aug 15 13:36:00 2013   End:  Thu Aug 15 13:36:15 2013

GO:0007399 "nervous system development" evidence=TAS

GO:0016605 "PML body" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	109
KOG0532|consensus	722		99.71
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.85
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.8
KOG0472|consensus	565		97.73
KOG4579|consensus	177		97.56
KOG0617|consensus	264		97.49
KOG0444|consensus	1255		97.32
PLN03150	623	hypothetical protein; Provisional	96.98
KOG0444|consensus	1255		96.98
KOG0472|consensus	565		96.87
KOG0618|consensus	1081		96.83
PLN03150	623	hypothetical protein; Provisional	96.52
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.41
KOG0532|consensus	722		96.26
KOG0617|consensus	264		96.19
KOG4658|consensus	889		96.16
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.15
KOG4658|consensus	889		96.14
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.1
KOG4579|consensus	177		95.94
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	95.92
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.92
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	95.6
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.57
PRK15386	426	type III secretion protein GogB; Provisional	95.55
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	95.52
PLN03210	1153	Resistant to P. syringae 6; Provisional	95.37
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	95.31
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	95.06
KOG0618|consensus	1081		94.98
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	94.96
PLN03210	1153	Resistant to P. syringae 6; Provisional	94.91
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	94.8
KOG4237|consensus	498		94.77
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	94.42
KOG1259|consensus	490		90.34
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.58
PRK15386	426	type III secretion protein GogB; Provisional	86.28
KOG1259|consensus	490		85.81
KOG4194|consensus	873		82.72

>KOG0532|consensus

Probab=99.71  E-value=1.1e-18  Score=154.37  Aligned_cols=93  Identities=34%  Similarity=0.531  Sum_probs=86.0

Q ss_pred             CCCCccchhHHHHHHHHHHHHhhhhceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEE
Q psy18121          7 MNLTSQSQVHLARSLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVI   86 (109)
Q Consensus         7 ~~~~~~~~~~~~rslerhLE~A~kTGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~   86 (109)
                      .++.|.....|+|++++.+|+|+.||+|.|+||||||||+.+.+|+|+||+++|| |+|  ||.++|.+.|.|.+|++|+
T Consensus        28 g~~~g~~~~s~trsl~r~leeA~~sg~l~Ls~rrlk~fpr~a~~~~ltdt~~aDl-srN--R~~elp~~~~~f~~Le~li  104 (722)
T KOG0532|consen   28 GSIPGGQTTSYTRSLERALEEAEYSGRLLLSGRRLKEFPRGAASYDLTDTVFADL-SRN--RFSELPEEACAFVSLESLI  104 (722)
T ss_pred             CCCCCCCCcccchhhhHHHHHHhhhcccccccchhhcCCCccccccccchhhhhc-ccc--ccccCchHHHHHHHHHHHH
Confidence            3444456678999999999999999999999999999999988899999999999 999  9999999999999999999


Q ss_pred             ecc-eeeccCchhhhhh
Q psy18121         87 VVY-FNITYPGLSMAIR  102 (109)
Q Consensus        87 ~~~-~l~~~P~~~g~l~  102 (109)
                      +.- ++-++|+.++.+.
T Consensus       105 Ly~n~~r~ip~~i~~L~  121 (722)
T KOG0532|consen  105 LYHNCIRTIPEAICNLE  121 (722)
T ss_pred             HHhccceecchhhhhhh
Confidence            988 9999999998775

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.85  E-value=1.9e-05  Score=48.43  Aligned_cols=54  Identities=19%  Similarity=0.184  Sum_probs=43.5

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY   89 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~   89 (109)
                      -+|.|++++++++|...- ..+..-..+|+ +.|  ++.++|+. +..+..|++|++++
T Consensus         4 ~~L~l~~n~l~~i~~~~f-~~l~~L~~L~l-~~N--~l~~i~~~~f~~l~~L~~L~l~~   58 (61)
T PF13855_consen    4 ESLDLSNNKLTEIPPDSF-SNLPNLETLDL-SNN--NLTSIPPDAFSNLPNLRYLDLSN   58 (61)
T ss_dssp             SEEEETSSTESEECTTTT-TTGTTESEEEE-TSS--SESEEETTTTTTSTTESEEEETS
T ss_pred             cEEECCCCCCCccCHHHH-cCCCCCCEeEc-cCC--ccCccCHHHHcCCCCCCEEeCcC
Confidence            368999999999998651 22444344999 888  99999984 69999999999987

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.80  E-value=1.1e-05  Score=48.65  Aligned_cols=38  Identities=11%  Similarity=0.061  Sum_probs=32.0

Q ss_pred             EE-EeeecCccccccccccccccccccceEEecc-eeeccCch
Q psy18121         57 VI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGL   97 (109)
Q Consensus        57 lr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~   97 (109)
                      ++ +|+ +.|  +|++||++|+++..|+.|++++ .+..+|+.
T Consensus         3 L~~L~l-~~N--~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~l   42 (44)
T PF12799_consen    3 LEELDL-SNN--QITDLPPELSNLPNLETLNLSNNPISDISPL   42 (44)
T ss_dssp             -SEEEE-TSS--S-SSHGGHGTTCTTSSEEEETSSCCSBEGGG
T ss_pred             ceEEEc-cCC--CCcccCchHhCCCCCCEEEecCCCCCCCcCC
Confidence            45 899 889  9999999999999999999999 87777653

...

>KOG0472|consensus

Probab=97.73  E-value=5.7e-06  Score=72.73  Aligned_cols=75  Identities=29%  Similarity=0.377  Sum_probs=61.2

Q ss_pred             HHHHHhhhhceeEecCCCCCCCCCCCCCccc------------------------------------CCcEEEeeecCcc
Q psy18121         23 RILEEAHLSGELNLSGRKLKDFPNSGGKYDL------------------------------------SDSVIVVYFSRSG   66 (109)
Q Consensus        23 rhLE~A~kTGvL~Ls~rkLkeFP~~~~~~dL------------------------------------sdtlrlDL~S~N~   66 (109)
                      +.+.-|-|+|.+++|+|.|++.|.+.  |+.                                    ..-+.+++ +.| 
T Consensus         3 ~l~k~arksg~lnlsnr~l~~vp~~v--yq~~~t~~e~e~wW~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~-~~n-   78 (565)
T KOG0472|consen    3 RLLKAARKSGSLNLSNRSLKDVPTEV--YQINLTTGEGENWWEQVDLQKLILSHNDLEVLREDLKNLACLTVLNV-HDN-   78 (565)
T ss_pred             hHHHHHHhhcccccccchhhhccHHH--HHHHhhccchhhhhhhcchhhhhhccCchhhccHhhhcccceeEEEe-ccc-
Confidence            45778999999999999999999876  432                                    12223667 788 


Q ss_pred             ccccccccccccccccceEEecc-eeeccCchhhhhh
Q psy18121         67 RKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIR  102 (109)
Q Consensus        67 ~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~  102 (109)
                       ++.++|++||+...+++|+||. .+..+|++++.+.
T Consensus        79 -~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~  114 (565)
T KOG0472|consen   79 -KLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLI  114 (565)
T ss_pred             -hhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhh
Confidence             8999999999999999999998 9999999988764

>KOG4579|consensus

Probab=97.56  E-value=1.2e-05  Score=62.62  Aligned_cols=69  Identities=14%  Similarity=0.190  Sum_probs=54.7

Q ss_pred             eEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhhhhh
Q psy18121         34 LNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRKAQW  106 (109)
Q Consensus        34 L~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K~~~  106 (109)
                      +.|+++.+|+||+.+.. ..+-.+.+.| ++|  +++++|.|+..+..|++|+++. .+.-+|..|--|.|-..
T Consensus        58 i~ls~N~fk~fp~kft~-kf~t~t~lNl-~~n--eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~  127 (177)
T KOG4579|consen   58 ISLSDNGFKKFPKKFTI-KFPTATTLNL-ANN--EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDM  127 (177)
T ss_pred             EecccchhhhCCHHHhh-ccchhhhhhc-chh--hhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHH
Confidence            67888999999998731 2222233788 889  9999999999999999999999 89999988877766443

>KOG0617|consensus

Probab=97.49  E-value=2.2e-05  Score=63.58  Aligned_cols=75  Identities=16%  Similarity=0.189  Sum_probs=56.4

Q ss_pred             HHhhhhceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhhh
Q psy18121         26 EEAHLSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRKA  104 (109)
Q Consensus        26 E~A~kTGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K~  104 (109)
                      +||..+--   +.|++..|-.-..-++++.++|+-| |-|  |++.+|+.|..+.+|+.|++++ .++.+|-.|..|-|-
T Consensus         8 dE~rE~~~---~DrgiSsf~~~~gLf~~s~ITrLtL-SHN--Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~kl   81 (264)
T KOG0617|consen    8 DEARETHN---ADRGISSFEELPGLFNMSNITRLTL-SHN--KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKL   81 (264)
T ss_pred             hHhhhhhc---cccccccHhhcccccchhhhhhhhc-ccC--ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhh
Confidence            44443333   7788887776544477888888888 888  8888888888888888888888 888888888887775


Q ss_pred             hh
Q psy18121        105 QW  106 (109)
Q Consensus       105 ~~  106 (109)
                      ..
T Consensus        82 r~   83 (264)
T KOG0617|consen   82 RI   83 (264)
T ss_pred             hh
Confidence            53

>KOG0444|consensus

Probab=97.32  E-value=3.4e-05  Score=71.51  Aligned_cols=66  Identities=24%  Similarity=0.243  Sum_probs=60.4

Q ss_pred             HHHHHHHHhhhhceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc
Q psy18121         20 SLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY   89 (109)
Q Consensus        20 slerhLE~A~kTGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~   89 (109)
                      -+-+-||.|..+=||+||.+....+|..+- ..|+|-+.+|| |+|  |+..||+-|-++.+|++|.+|+
T Consensus       117 EvP~~LE~AKn~iVLNLS~N~IetIPn~lf-inLtDLLfLDL-S~N--rLe~LPPQ~RRL~~LqtL~Ls~  182 (1255)
T KOG0444|consen  117 EVPTNLEYAKNSIVLNLSYNNIETIPNSLF-INLTDLLFLDL-SNN--RLEMLPPQIRRLSMLQTLKLSN  182 (1255)
T ss_pred             hcchhhhhhcCcEEEEcccCccccCCchHH-HhhHhHhhhcc-ccc--hhhhcCHHHHHHhhhhhhhcCC
Confidence            344789999999999999999999999862 45999999999 999  9999999999999999999998

>PLN03150 hypothetical protein; Provisional

Probab=96.98  E-value=0.00048  Score=59.98  Aligned_cols=67  Identities=18%  Similarity=0.191  Sum_probs=31.4

Q ss_pred             eEecCCCCC-CCCCCCCCcccCCcEEEeeecCcccccc-ccccccccccccceEEecc-eee-ccCchhhhhhhhh
Q psy18121         34 LNLSGRKLK-DFPNSGGKYDLSDSVIVVYFSRSGRKLK-DFPNSGGKYDLSDSVIVVY-FNI-TYPGLSMAIRKAQ  105 (109)
Q Consensus        34 L~Ls~rkLk-eFP~~~~~~dLsdtlrlDL~S~N~~rl~-elP~~I~~F~~LksL~~~~-~l~-~~P~~~g~l~K~~  105 (109)
                      |.|++++|+ .+|.++  ..|..-..+|| |.|  +|. .+|..++.+..|+.|++++ .+. .+|+.++.+.+-+
T Consensus       423 L~L~~n~L~g~ip~~i--~~L~~L~~L~L-s~N--~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~  493 (623)
T PLN03150        423 LGLDNQGLRGFIPNDI--SKLRHLQSINL-SGN--SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR  493 (623)
T ss_pred             EECCCCCccccCCHHH--hCCCCCCEEEC-CCC--cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC
Confidence            445555554 334333  22333223555 555  554 4555555555555555555 222 4555555444433

>KOG0444|consensus

Probab=96.98  E-value=0.0002  Score=66.61  Aligned_cols=80  Identities=18%  Similarity=0.235  Sum_probs=69.1

Q ss_pred             HHHHHhhhhceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhh
Q psy18121         23 RILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAI  101 (109)
Q Consensus        23 rhLE~A~kTGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l  101 (109)
                      ..|+.-+.-..+-||-+.|...|..+  |.|..-.|+.| |.|  +|++|-..++.|..|++|++|- .|-.+|+.++-+
T Consensus       216 tsld~l~NL~dvDlS~N~Lp~vPecl--y~l~~LrrLNL-S~N--~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL  290 (1255)
T KOG0444|consen  216 TSLDDLHNLRDVDLSENNLPIVPECL--YKLRNLRRLNL-SGN--KITELNMTEGEWENLETLNLSRNQLTVLPDAVCKL  290 (1255)
T ss_pred             CchhhhhhhhhccccccCCCcchHHH--hhhhhhheecc-CcC--ceeeeeccHHHHhhhhhhccccchhccchHHHhhh
Confidence            34555566667788999999999998  88987777999 989  9999999999999999999999 999999999999


Q ss_pred             hhhhhc
Q psy18121        102 RKAQWL  107 (109)
Q Consensus       102 ~K~~~~  107 (109)
                      .|-.-|
T Consensus       291 ~kL~kL  296 (1255)
T KOG0444|consen  291 TKLTKL  296 (1255)
T ss_pred             HHHHHH
Confidence            886543

>KOG0472|consensus

Probab=96.87  E-value=0.00023  Score=62.88  Aligned_cols=63  Identities=19%  Similarity=0.046  Sum_probs=52.3

Q ss_pred             hhceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchh
Q psy18121         30 LSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLS   98 (109)
Q Consensus        30 kTGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~   98 (109)
                      .-+||-|..+||||+|.++  +-|..--|+|+ |+|  -++.+|...|++ .||.|-+.| -+.|+-.+|
T Consensus       253 ~l~vLDLRdNklke~Pde~--clLrsL~rLDl-SNN--~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~i  316 (565)
T KOG0472|consen  253 SLLVLDLRDNKLKEVPDEI--CLLRSLERLDL-SNN--DISSLPYSLGNL-HLKFLALEGNPLRTIRREI  316 (565)
T ss_pred             cceeeeccccccccCchHH--HHhhhhhhhcc-cCC--ccccCCcccccc-eeeehhhcCCchHHHHHHH
Confidence            3589999999999999988  66776667999 999  999999999999 899998888 776665443

>KOG0618|consensus

Probab=96.83  E-value=7.4e-05  Score=70.14  Aligned_cols=79  Identities=19%  Similarity=0.176  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHhhhhceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCc
Q psy18121         18 ARSLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPG   96 (109)
Q Consensus        18 ~rslerhLE~A~kTGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~   96 (109)
                      +++.=..|+-+.+=-||+|+.++|.+||...- ..|.+--.++| |.|  |++.||..|.++.+|++|.+-+ ++..|| 
T Consensus       372 td~c~p~l~~~~hLKVLhLsyNrL~~fpas~~-~kle~LeeL~L-SGN--kL~~Lp~tva~~~~L~tL~ahsN~l~~fP-  446 (1081)
T KOG0618|consen  372 TDSCFPVLVNFKHLKVLHLSYNRLNSFPASKL-RKLEELEELNL-SGN--KLTTLPDTVANLGRLHTLRAHSNQLLSFP-  446 (1081)
T ss_pred             cccchhhhccccceeeeeecccccccCCHHHH-hchHHhHHHhc-ccc--hhhhhhHHHHhhhhhHHHhhcCCceeech-
Confidence            33444566777778899999999999999741 33766666999 888  9999999999999999999988 999999 


Q ss_pred             hhhhh
Q psy18121         97 LSMAI  101 (109)
Q Consensus        97 ~~g~l  101 (109)
                      ++..+
T Consensus       447 e~~~l  451 (1081)
T KOG0618|consen  447 ELAQL  451 (1081)
T ss_pred             hhhhc
Confidence            55443

>PLN03150 hypothetical protein; Provisional

Probab=96.52  E-value=0.0021  Score=56.04  Aligned_cols=65  Identities=18%  Similarity=0.218  Sum_probs=52.5

Q ss_pred             ceeEecCCCCC-CCCCCCCCcccCCcEEEeeecCcccccc-ccccccccccccceEEecc-e-eeccCchhhhh
Q psy18121         32 GELNLSGRKLK-DFPNSGGKYDLSDSVIVVYFSRSGRKLK-DFPNSGGKYDLSDSVIVVY-F-NITYPGLSMAI  101 (109)
Q Consensus        32 GvL~Ls~rkLk-eFP~~~~~~dLsdtlrlDL~S~N~~rl~-elP~~I~~F~~LksL~~~~-~-l~~~P~~~g~l  101 (109)
                      -.|.|++++|. .+|..+.  .+..-..+|| |.|  +|. .+|..++++..|+.|++++ . ...+|..++.+
T Consensus       445 ~~L~Ls~N~l~g~iP~~~~--~l~~L~~LdL-s~N--~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~  513 (623)
T PLN03150        445 QSINLSGNSIRGNIPPSLG--SITSLEVLDL-SYN--SFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR  513 (623)
T ss_pred             CEEECCCCcccCcCChHHh--CCCCCCEEEC-CCC--CCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhc
Confidence            57899999998 7887773  3655445999 999  898 7899999999999999998 4 44889887653

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.41  E-value=0.0041  Score=56.35  Aligned_cols=59  Identities=15%  Similarity=0.135  Sum_probs=44.3

Q ss_pred             hceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchh
Q psy18121         31 SGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLS   98 (109)
Q Consensus        31 TGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~   98 (109)
                      ..+|.|++.+|.++|..+.    .....+|| +.|  +|++||..+.  ..|+.|++++ .+.++|+.+
T Consensus       180 ~~~L~L~~~~LtsLP~~Ip----~~L~~L~L-s~N--~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l  239 (754)
T PRK15370        180 KTELRLKILGLTTIPACIP----EQITTLIL-DNN--ELKSLPENLQ--GNIKTLYANSNQLTSIPATL  239 (754)
T ss_pred             ceEEEeCCCCcCcCCcccc----cCCcEEEe-cCC--CCCcCChhhc--cCCCEEECCCCccccCChhh
Confidence            4689999999999998652    22334888 888  8999988764  4788888877 777777644

>KOG0532|consensus

Probab=96.26  E-value=0.0006  Score=61.93  Aligned_cols=64  Identities=19%  Similarity=0.217  Sum_probs=44.7

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecc-eeeccCchhhhh
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAI  101 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l  101 (109)
                      -||.++++||+-.|.+..   +..++. +|. |.|  -+..+|+.+|.+..|+.|++.- .++.+|+|.+.|
T Consensus       146 kvli~sNNkl~~lp~~ig---~~~tl~~ld~-s~n--ei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L  211 (722)
T KOG0532|consen  146 KVLIVSNNKLTSLPEEIG---LLPTLAHLDV-SKN--EIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL  211 (722)
T ss_pred             eeEEEecCccccCCcccc---cchhHHHhhh-hhh--hhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC
Confidence            367778888888887764   444555 777 777  7777777777777777777666 677777766643

>KOG0617|consensus

Probab=96.19  E-value=0.00077  Score=54.72  Aligned_cols=72  Identities=18%  Similarity=0.085  Sum_probs=54.8

Q ss_pred             HHHhhhhceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecc-eeeccCchhhhhh
Q psy18121         25 LEEAHLSGELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIR  102 (109)
Q Consensus        25 LE~A~kTGvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~  102 (109)
                      |=++..--.|.||.+||.-+|+..+.  |-. +. +.+ ++|  .++++|..|+.+..||+|+++- ++..+|.-+|++-
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia~--l~n-levln~-~nn--qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p  102 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIAE--LKN-LEVLNL-SNN--QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFP  102 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHHH--hhh-hhhhhc-ccc--hhhhcChhhhhchhhhheecchhhhhcCccccCCCc
Confidence            33444445678889999999987633  433 44 777 888  8999999999999999999987 8888888887653

>KOG4658|consensus

Probab=96.16  E-value=0.0016  Score=60.01  Aligned_cols=61  Identities=13%  Similarity=0.004  Sum_probs=32.6

Q ss_pred             CCCCCCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhhhh
Q psy18121         41 LKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRKAQ  105 (109)
Q Consensus        41 LkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K~~  105 (109)
                      +...|...  +.--..+| +|| |.| ..+.+||..|+++-+|+-|++++ .+..+|..++.|+|-+
T Consensus       559 l~~is~~f--f~~m~~LrVLDL-s~~-~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~  621 (889)
T KOG4658|consen  559 LLEISGEF--FRSLPLLRVLDL-SGN-SSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLI  621 (889)
T ss_pred             hhhcCHHH--HhhCcceEEEEC-CCC-CccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhh
Confidence            44444433  22223455 666 544 25556666666666666666666 5555666666555544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.15  E-value=0.0041  Score=37.91  Aligned_cols=42  Identities=14%  Similarity=0.068  Sum_probs=34.7

Q ss_pred             EeeecCcccccccccc-ccccccccceEEecc-eeeccCch-hhhhhh
Q psy18121         59 VVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYPGL-SMAIRK  103 (109)
Q Consensus        59 lDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P~~-~g~l~K  103 (109)
                      +|+ +.|  +|+++|+ .+..+..|++|++++ .+..+|.. +.-+.+
T Consensus         6 L~l-~~n--~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~   50 (61)
T PF13855_consen    6 LDL-SNN--KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPN   50 (61)
T ss_dssp             EEE-TSS--TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTT
T ss_pred             EEC-CCC--CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCC
Confidence            899 889  9999997 568999999999999 88888863 344444

...

>KOG4658|consensus

Probab=96.14  E-value=0.0026  Score=58.62  Aligned_cols=77  Identities=19%  Similarity=0.250  Sum_probs=64.3

Q ss_pred             HHHhhhhceeEec-CCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecc--eeeccCchhhh
Q psy18121         25 LEEAHLSGELNLS-GRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY--FNITYPGLSMA  100 (109)
Q Consensus        25 LE~A~kTGvL~Ls-~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~--~l~~~P~~~g~  100 (109)
                      +.....=.||-|| +..+.++|.+.++  |- .+| +|| |..  .+++||..+++|..|.+|++..  ++.++|+.++.
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~--Li-~LryL~L-~~t--~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~  640 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGE--LV-HLRYLDL-SDT--GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLE  640 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhh--hh-hhhcccc-cCC--CccccchHHHHHHhhheeccccccccccccchhhh
Confidence            4445556799999 8899999998743  43 477 999 988  8999999999999999999998  88899999998


Q ss_pred             hhhhhhc
Q psy18121        101 IRKAQWL  107 (109)
Q Consensus       101 l~K~~~~  107 (109)
                      |.+-+.|
T Consensus       641 L~~Lr~L  647 (889)
T KOG4658|consen  641 LQSLRVL  647 (889)
T ss_pred             cccccEE
Confidence            8776654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.10  E-value=0.0042  Score=56.26  Aligned_cols=56  Identities=16%  Similarity=0.151  Sum_probs=29.4

Q ss_pred             eeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecc-eeeccCchh
Q psy18121         33 ELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLS   98 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~   98 (109)
                      .|.|+++++.++|..+     ...++ +|+ |.|  +|+.+|..+.  ..|+.|++++ .+..+|+.+
T Consensus       245 ~L~Ls~N~L~~LP~~l-----~s~L~~L~L-s~N--~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l  302 (754)
T PRK15370        245 EMELSINRITELPERL-----PSALQSLDL-FHN--KISCLPENLP--EELRYLSVYDNSIRTLPAHL  302 (754)
T ss_pred             EEECcCCccCcCChhH-----hCCCCEEEC-cCC--ccCccccccC--CCCcEEECCCCccccCcccc
Confidence            3444444444444432     11334 666 555  6666666553  3566666666 666666543

>KOG4579|consensus

Probab=95.94  E-value=0.0011  Score=51.80  Aligned_cols=79  Identities=22%  Similarity=0.172  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHhhhhceeEecCCCCCCCCCCCCCcccCCcEE---EeeecCcccccccccccc-ccccccceEEecc-eee
Q psy18121         18 ARSLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDSVI---VVYFSRSGRKLKDFPNSG-GKYDLSDSVIVVY-FNI   92 (109)
Q Consensus        18 ~rslerhLE~A~kTGvL~Ls~rkLkeFP~~~~~~dLsdtlr---lDL~S~N~~rl~elP~~I-~~F~~LksL~~~~-~l~   92 (109)
                      |+-+| .-|+|...+.|.||++.|-.+|+..  |.|+....   ++| |+|  -|..+|+-+ .+|.-+..|++++ .+.
T Consensus        17 ~evVe-rcedakE~h~ldLssc~lm~i~dav--y~l~~~~el~~i~l-s~N--~fk~fp~kft~kf~t~t~lNl~~neis   90 (177)
T KOG4579|consen   17 NEVVE-RCEDAKELHFLDLSSCQLMYIADAV--YMLSKGYELTKISL-SDN--GFKKFPKKFTIKFPTATTLNLANNEIS   90 (177)
T ss_pred             HHHHH-hhHHHHHhhhcccccchhhHHHHHH--HHHhCCceEEEEec-ccc--hhhhCCHHHhhccchhhhhhcchhhhh
Confidence            44444 4588999999999999999888887  66764433   899 999  899999954 6999999999999 999


Q ss_pred             ccCchhhhhh
Q psy18121         93 TYPGLSMAIR  102 (109)
Q Consensus        93 ~~P~~~g~l~  102 (109)
                      .+|+|+-.|.
T Consensus        91 dvPeE~Aam~  100 (177)
T KOG4579|consen   91 DVPEELAAMP  100 (177)
T ss_pred             hchHHHhhhH
Confidence            9999976653

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=95.92  E-value=0.0073  Score=53.23  Aligned_cols=46  Identities=15%  Similarity=0.166  Sum_probs=29.2

Q ss_pred             EeeecCcccccc-ccccccccccccceEEecc-e-eeccCchhhhhhhhhhc
Q psy18121         59 VVYFSRSGRKLK-DFPNSGGKYDLSDSVIVVY-F-NITYPGLSMAIRKAQWL  107 (109)
Q Consensus        59 lDL~S~N~~rl~-elP~~I~~F~~LksL~~~~-~-l~~~P~~~g~l~K~~~~  107 (109)
                      +|| |.|  ++. .+|..++.+..|+.|++++ . ...+|+.++.+++-+.|
T Consensus       145 L~L-s~n--~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  193 (968)
T PLN00113        145 LDL-SNN--MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL  193 (968)
T ss_pred             EEC-cCC--cccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence            666 555  554 5666777777777777776 3 24667766666655443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.92  E-value=0.0049  Score=36.98  Aligned_cols=37  Identities=24%  Similarity=0.389  Sum_probs=30.7

Q ss_pred             eeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc
Q psy18121         33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN   74 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~   74 (109)
                      +|.|++++++++|.++  ..|..-..+|+ |.|  +|+++|+
T Consensus         5 ~L~l~~N~i~~l~~~l--~~l~~L~~L~l-~~N--~i~~i~~   41 (44)
T PF12799_consen    5 ELDLSNNQITDLPPEL--SNLPNLETLNL-SNN--PISDISP   41 (44)
T ss_dssp             EEEETSSS-SSHGGHG--TTCTTSSEEEE-TSS--CCSBEGG
T ss_pred             EEEccCCCCcccCchH--hCCCCCCEEEe-cCC--CCCCCcC
Confidence            6899999999999987  44877667999 888  9998875

...

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=95.60  E-value=0.0083  Score=52.88  Aligned_cols=68  Identities=19%  Similarity=0.185  Sum_probs=35.0

Q ss_pred             eeEecCCCCC-CCCCCCCCcccCCcEEEeeecCcccccc-ccccccccccccceEEecc-ee-eccCchhhhhhhhh
Q psy18121         33 ELNLSGRKLK-DFPNSGGKYDLSDSVIVVYFSRSGRKLK-DFPNSGGKYDLSDSVIVVY-FN-ITYPGLSMAIRKAQ  105 (109)
Q Consensus        33 vL~Ls~rkLk-eFP~~~~~~dLsdtlrlDL~S~N~~rl~-elP~~I~~F~~LksL~~~~-~l-~~~P~~~g~l~K~~  105 (109)
                      +|.|+++++. .+|....+  +..-..+|+ +.|  .+. .+|..++++..|++|++++ .+ ..+|+.++.+++-+
T Consensus       144 ~L~Ls~n~~~~~~p~~~~~--l~~L~~L~L-~~n--~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  215 (968)
T PLN00113        144 TLDLSNNMLSGEIPNDIGS--FSSLKVLDL-GGN--VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK  215 (968)
T ss_pred             EEECcCCcccccCChHHhc--CCCCCEEEC-ccC--cccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence            4555555554 44544422  332222666 666  543 5566666666666666665 22 24565555554433

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.57  E-value=0.0057  Score=31.93  Aligned_cols=19  Identities=21%  Similarity=0.233  Sum_probs=15.5

Q ss_pred             EE-EeeecCcccccccccccccc
Q psy18121         57 VI-VVYFSRSGRKLKDFPNSGGK   78 (109)
Q Consensus        57 lr-lDL~S~N~~rl~elP~~I~~   78 (109)
                      ++ +|+ |.|  +|+++|+++++
T Consensus         2 L~~Ldl-s~n--~l~~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDL-SGN--NLTSIPSSFSN   21 (22)
T ss_dssp             ESEEEE-TSS--EESEEGTTTTT
T ss_pred             ccEEEC-CCC--cCEeCChhhcC
Confidence            44 899 888  99999998765

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.55  E-value=0.017  Score=50.01  Aligned_cols=72  Identities=18%  Similarity=0.264  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHhhhhceeEecCCCCCCCCCCCCCcccCCcEE-EeeecC-ccccccccccccccccccceEEecc--eeec
Q psy18121         18 ARSLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSR-SGRKLKDFPNSGGKYDLSDSVIVVY--FNIT   93 (109)
Q Consensus        18 ~rslerhLE~A~kTGvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~-N~~rl~elP~~I~~F~~LksL~~~~--~l~~   93 (109)
                      +-++.| ++++...+.|.+++++|+++|.      +...++ +++ +. +  .++.+|..+.  ..|++|.+++  .+..
T Consensus        42 ~~a~~r-~~~~~~l~~L~Is~c~L~sLP~------LP~sLtsL~L-snc~--nLtsLP~~LP--~nLe~L~Ls~Cs~L~s  109 (426)
T PRK15386         42 SEITPQ-IEEARASGRLYIKDCDIESLPV------LPNELTEITI-ENCN--NLTTLPGSIP--EGLEKLTVCHCPEISG  109 (426)
T ss_pred             HHHHHH-HHHhcCCCEEEeCCCCCcccCC------CCCCCcEEEc-cCCC--CcccCCchhh--hhhhheEccCcccccc
Confidence            344455 8888999999999999999993      444555 888 43 4  6888887663  5788888877  4556


Q ss_pred             cCchhhhh
Q psy18121         94 YPGLSMAI  101 (109)
Q Consensus        94 ~P~~~g~l  101 (109)
                      +|+.+..|
T Consensus       110 LP~sLe~L  117 (426)
T PRK15386        110 LPESVRSL  117 (426)
T ss_pred             cccccceE
Confidence            66655433

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=95.52  E-value=0.026  Score=51.82  Aligned_cols=57  Identities=18%  Similarity=0.158  Sum_probs=36.5

Q ss_pred             hceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCch
Q psy18121         31 SGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGL   97 (109)
Q Consensus        31 TGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~   97 (109)
                      ..+|.|++++|+++|..+..    ....+++ +.|  +|+.||..   ...|++|++++ .+.++|..
T Consensus       203 ~~~LdLs~~~LtsLP~~l~~----~L~~L~L-~~N--~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l  260 (788)
T PRK15387        203 NAVLNVGESGLTTLPDCLPA----HITTLVI-PDN--NLTSLPAL---PPELRTLEVSGNQLTSLPVL  260 (788)
T ss_pred             CcEEEcCCCCCCcCCcchhc----CCCEEEc-cCC--cCCCCCCC---CCCCcEEEecCCccCcccCc
Confidence            45799999999999987521    2222666 555  66666653   35566666666 56566543

>PLN03210 Resistant to P

Probab=95.37  E-value=0.012  Score=54.46  Aligned_cols=48  Identities=8%  Similarity=-0.071  Sum_probs=39.5

Q ss_pred             cEE-EeeecCccccccccccccccccccceEEecc--eeeccCchhhhhhhhhh
Q psy18121         56 SVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY--FNITYPGLSMAIRKAQW  106 (109)
Q Consensus        56 tlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~--~l~~~P~~~g~l~K~~~  106 (109)
                      +++ +|| +.|  .|+++|..|+.|..|+.|.+++  .+.++|..++.+++-++
T Consensus       847 nL~~L~L-s~n--~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~  897 (1153)
T PLN03210        847 NISDLNL-SRT--GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLET  897 (1153)
T ss_pred             ccCEeEC-CCC--CCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCe
Confidence            355 888 888  8999999999999999999998  78888888777665443

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=95.31  E-value=0.0078  Score=55.15  Aligned_cols=28  Identities=18%  Similarity=0.118  Sum_probs=19.4

Q ss_pred             EeeecCccccccccccccccccccceEEecc
Q psy18121         59 VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY   89 (109)
Q Consensus        59 lDL~S~N~~rl~elP~~I~~F~~LksL~~~~   89 (109)
                      +|+ +.|  .|+.||..++++..|+.|++++
T Consensus       427 L~L-s~N--qLt~LP~sl~~L~~L~~LdLs~  454 (788)
T PRK15387        427 LSV-YRN--QLTRLPESLIHLSSETTVNLEG  454 (788)
T ss_pred             hhh-ccC--cccccChHHhhccCCCeEECCC
Confidence            666 666  6667777777777777777766

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=95.06  E-value=0.0084  Score=47.52  Aligned_cols=61  Identities=18%  Similarity=0.248  Sum_probs=26.9

Q ss_pred             eeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecc-eeeccCchh
Q psy18121         33 ELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLS   98 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~   98 (109)
                      +|.+.+....++|.....  +...++ +|+ +.|  .+.++|..++.+..|+.|.+++ .+..+|...
T Consensus       120 ~L~l~~n~i~~i~~~~~~--~~~nL~~L~l-~~N--~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~  182 (394)
T COG4886         120 SLDLDNNNITDIPPLIGL--LKSNLKELDL-SDN--KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLL  182 (394)
T ss_pred             EEecCCcccccCcccccc--chhhcccccc-ccc--chhhhhhhhhccccccccccCCchhhhhhhhh
Confidence            444445555555544311  111233 444 444  4444444444444444444444 444444443

>KOG0618|consensus

Probab=94.98  E-value=0.0069  Score=57.36  Aligned_cols=72  Identities=19%  Similarity=0.195  Sum_probs=59.3

Q ss_pred             hceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhhhhhc
Q psy18121         31 SGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRKAQWL  107 (109)
Q Consensus        31 TGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K~~~~  107 (109)
                      =-+|.||++.+..||..+  ..+.--.++.+ |+|  -+.++|..+++...|+.|++.+ ++.++|..+-.++--|.|
T Consensus        47 L~~l~lsnn~~~~fp~~i--t~l~~L~~ln~-s~n--~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~L  119 (1081)
T KOG0618|consen   47 LKSLDLSNNQISSFPIQI--TLLSHLRQLNL-SRN--YIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYL  119 (1081)
T ss_pred             eEEeeccccccccCCchh--hhHHHHhhccc-chh--hHhhCchhhhhhhcchhheeccchhhcCchhHHhhhccccc
Confidence            356789999999999987  33543344889 999  9999999999999999999999 999999988888765543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=94.96  E-value=0.017  Score=43.77  Aligned_cols=57  Identities=9%  Similarity=0.053  Sum_probs=18.6

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCcccccccccccc-ccccccceEEecc-eeeccC
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSG-GKYDLSDSVIVVY-FNITYP   95 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I-~~F~~LksL~~~~-~l~~~P   95 (109)
                      -+|.||+++++.++.-. .  | ..++ +|+ ++|  ++++++..+ ..|.+|++|.+++ ++..+-
T Consensus        45 ~~L~Ls~N~I~~l~~l~-~--L-~~L~~L~L-~~N--~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~  104 (175)
T PF14580_consen   45 EVLDLSNNQITKLEGLP-G--L-PRLKTLDL-SNN--RISSISEGLDKNLPNLQELYLSNNKISDLN  104 (175)
T ss_dssp             -EEE-TTS--S--TT--------TT--EEE---SS-----S-CHHHHHH-TT--EEE-TTS---SCC
T ss_pred             CEEECCCCCCccccCcc-C--h-hhhhhccc-CCC--CCCccccchHHhCCcCCEEECcCCcCCChH
Confidence            45666666666665321 1  2 2344 666 666  677765544 2466677777766 555543

>PLN03210 Resistant to P

Probab=94.91  E-value=0.031  Score=51.89  Aligned_cols=66  Identities=17%  Similarity=0.155  Sum_probs=29.6

Q ss_pred             eEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc--eeeccCchhhhhhhh
Q psy18121         34 LNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY--FNITYPGLSMAIRKA  104 (109)
Q Consensus        34 L~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~--~l~~~P~~~g~l~K~  104 (109)
                      |.|++++++.+|...  ..+..-..+|| +.|. .+.++|. ++.+..|++|++++  .+..+|..++-+.+-
T Consensus       616 L~L~~s~l~~L~~~~--~~l~~Lk~L~L-s~~~-~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L  683 (1153)
T PLN03210        616 LQMQGSKLEKLWDGV--HSLTGLRNIDL-RGSK-NLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKL  683 (1153)
T ss_pred             EECcCcccccccccc--ccCCCCCEEEC-CCCC-CcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCC
Confidence            444444444444433  22332222555 3331 2444442 44555555555555  355555555555443

syringae 6; Provisional

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=94.80  E-value=0.016  Score=45.98  Aligned_cols=68  Identities=18%  Similarity=0.118  Sum_probs=47.6

Q ss_pred             hhceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhh
Q psy18121         30 LSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIR  102 (109)
Q Consensus        30 kTGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~  102 (109)
                      .-..|.+++++++++|.....  +..-..+|+ +.|  +++++|..++....|+.|++++ .+..+|..++...
T Consensus       141 nL~~L~l~~N~i~~l~~~~~~--l~~L~~L~l-~~N--~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~  209 (394)
T COG4886         141 NLKELDLSDNKIESLPSPLRN--LPNLKNLDL-SFN--DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLS  209 (394)
T ss_pred             hcccccccccchhhhhhhhhc--ccccccccc-CCc--hhhhhhhhhhhhhhhhheeccCCccccCchhhhhhh
Confidence            345677888888888654421  333333888 777  8888888888888888888888 8888887765443

>KOG4237|consensus

Probab=94.77  E-value=0.025  Score=49.93  Aligned_cols=56  Identities=11%  Similarity=0.125  Sum_probs=46.7

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc-eeecc
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITY   94 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~   94 (109)
                      +..-=++++|+|+|..+    -.+|+.++| -.|  .|++||+. ++.|..|+-|++|. .++++
T Consensus        49 ~~VdCr~~GL~eVP~~L----P~~tveirL-dqN--~I~~iP~~aF~~l~~LRrLdLS~N~Is~I  106 (498)
T KOG4237|consen   49 GIVDCRGKGLTEVPANL----PPETVEIRL-DQN--QISSIPPGAFKTLHRLRRLDLSKNNISFI  106 (498)
T ss_pred             ceEEccCCCcccCcccC----CCcceEEEe-ccC--CcccCChhhccchhhhceecccccchhhc
Confidence            56667899999999987    446777888 889  99999995 68999999999999 55544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=94.42  E-value=0.03  Score=42.46  Aligned_cols=62  Identities=16%  Similarity=0.101  Sum_probs=17.8

Q ss_pred             hhceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecc-eeeccCchh
Q psy18121         30 LSGELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLS   98 (109)
Q Consensus        30 kTGvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~   98 (109)
                      +--+|.|.|+++..+..-.  ..| +.++ +|| |.|  .++.++. +..+..|+.|++++ ++.++++.+
T Consensus        20 ~~~~L~L~~n~I~~Ie~L~--~~l-~~L~~L~L-s~N--~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l   83 (175)
T PF14580_consen   20 KLRELNLRGNQISTIENLG--ATL-DKLEVLDL-SNN--QITKLEG-LPGLPRLKTLDLSNNRISSISEGL   83 (175)
T ss_dssp             ----------------S----TT--TT--EEE--TTS----S--TT-----TT--EEE--SS---S-CHHH
T ss_pred             ccccccccccccccccchh--hhh-cCCCEEEC-CCC--CCccccC-ccChhhhhhcccCCCCCCccccch
Confidence            3467999999999875422  123 4556 999 999  9999984 77899999999999 998887543

>KOG1259|consensus

Probab=90.34  E-value=0.14  Score=44.82  Aligned_cols=64  Identities=17%  Similarity=0.043  Sum_probs=42.8

Q ss_pred             HhhhhceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCc
Q psy18121         27 EAHLSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPG   96 (109)
Q Consensus        27 ~A~kTGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~   96 (109)
                      -+-+-.+|.+|.+++.++-. +  ..|..-+.+|| |.|  +++++--+=.++.+.|+|++++ .++++-+
T Consensus       305 L~Pkir~L~lS~N~i~~v~n-L--a~L~~L~~LDL-S~N--~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSG  369 (490)
T KOG1259|consen  305 LAPKLRRLILSQNRIRTVQN-L--AELPQLQLLDL-SGN--LLAECVGWHLKLGNIKTLKLAQNKIETLSG  369 (490)
T ss_pred             hccceeEEeccccceeeehh-h--hhcccceEeec-ccc--hhHhhhhhHhhhcCEeeeehhhhhHhhhhh
Confidence            34455677777777777766 3  23554455777 777  7777777777777777777777 6666544

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=89.58  E-value=0.13  Score=25.73  Aligned_cols=12  Identities=25%  Similarity=0.534  Sum_probs=6.4

Q ss_pred             EeeecCccccccccc
Q psy18121         59 VVYFSRSGRKLKDFP   73 (109)
Q Consensus        59 lDL~S~N~~rl~elP   73 (109)
                      +|+ |.|  +|++||
T Consensus         6 L~l-~~n--~L~~lP   17 (17)
T PF13504_consen    6 LDL-SNN--RLTSLP   17 (17)
T ss_dssp             EEE-TSS----SSE-
T ss_pred             EEC-CCC--CCCCCc
Confidence            677 666  677776

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=86.28  E-value=0.79  Score=39.91  Aligned_cols=55  Identities=18%  Similarity=0.231  Sum_probs=33.7

Q ss_pred             eeEecCC-CCCCCCCCCCCcccCCcEEEeeecCc-ccccccccccccccc------------------ccceEEecc-ee
Q psy18121         33 ELNLSGR-KLKDFPNSGGKYDLSDSVIVVYFSRS-GRKLKDFPNSGGKYD------------------LSDSVIVVY-FN   91 (109)
Q Consensus        33 vL~Ls~r-kLkeFP~~~~~~dLsdtlrlDL~S~N-~~rl~elP~~I~~F~------------------~LksL~~~~-~l   91 (109)
                      .|.++++ .|+++|..+..        +++ +.| -..+.+||+.+..+.                  +|+.|.+++ .+
T Consensus        98 ~L~Ls~Cs~L~sLP~sLe~--------L~L-~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~  168 (426)
T PRK15386         98 KLTVCHCPEISGLPESVRS--------LEI-KGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSN  168 (426)
T ss_pred             heEccCcccccccccccce--------EEe-CCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCc
Confidence            5677776 77777776633        334 222 124777887776553                  578888887 44


Q ss_pred             eccCc
Q psy18121         92 ITYPG   96 (109)
Q Consensus        92 ~~~P~   96 (109)
                      ..+|+
T Consensus       169 i~LP~  173 (426)
T PRK15386        169 IILPE  173 (426)
T ss_pred             ccCcc
Confidence            44444

>KOG1259|consensus

Probab=85.81  E-value=0.33  Score=42.46  Aligned_cols=61  Identities=16%  Similarity=0.191  Sum_probs=50.1

Q ss_pred             hhhceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecc-eeeccCc
Q psy18121         29 HLSGELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPG   96 (109)
Q Consensus        29 ~kTGvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~   96 (109)
                      |.--++-||++-.++|.++.   .|..-+| +|+ |.|  ++.++-. +..+.+|.+|.+|| .+..+-+
T Consensus       284 q~LtelDLS~N~I~~iDESv---KL~Pkir~L~l-S~N--~i~~v~n-La~L~~L~~LDLS~N~Ls~~~G  346 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESV---KLAPKLRRLIL-SQN--RIRTVQN-LAELPQLQLLDLSGNLLAECVG  346 (490)
T ss_pred             hhhhhccccccchhhhhhhh---hhccceeEEec-ccc--ceeeehh-hhhcccceEeecccchhHhhhh
Confidence            33456889999999999986   3666677 999 999  9999988 88999999999999 6655543

>KOG4194|consensus

Probab=82.72  E-value=0.86  Score=42.62  Aligned_cols=56  Identities=20%  Similarity=0.197  Sum_probs=40.2

Q ss_pred             hhceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc
Q psy18121         30 LSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY   89 (109)
Q Consensus        30 kTGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~   89 (109)
                      .|..|.||++||.+...+.- |+|..-..+-+ -+|  +++++|..++.-..|++|.+..
T Consensus        79 ~t~~LdlsnNkl~~id~~~f-~nl~nLq~v~l-~~N--~Lt~IP~f~~~sghl~~L~L~~  134 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFF-YNLPNLQEVNL-NKN--ELTRIPRFGHESGHLEKLDLRH  134 (873)
T ss_pred             ceeeeeccccccccCcHHHH-hcCCcceeeee-ccc--hhhhcccccccccceeEEeeec
Confidence            34568888888888876521 55554333778 445  8999998888888888888766

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	109
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.47
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.22
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.18
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.15
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.15
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.13
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.1
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.03
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.01
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.99
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	97.96
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.92
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.81
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.79
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.78
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.77
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.77
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.76
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.76
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.75
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.75
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.75
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.74
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.74
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.74
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.73
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	97.73
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.73
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.7
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.68
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.67
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.67
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.64
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.62
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.59
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.59
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.59
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.58
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.57
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.57
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.57
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.57
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.53
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.52
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.52
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.5
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	97.5
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.49
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	97.49
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.49
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.49
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.47
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.46
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.46
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.46
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.45
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.45
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.44
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.44
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.43
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.42
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.42
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.41
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.41
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.39
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.37
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.36
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.34
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.34
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.33
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.31
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.3
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.3
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.29
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.29
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	97.28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.24
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	97.24
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.23
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.2
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.2
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.2
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	97.19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	97.13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.1
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	97.08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	97.04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.02
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	96.97
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	96.94
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	96.92
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	96.89
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	96.86
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	96.85
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	96.83
1o6v_A	466	Internalin A; bacterial infection, extracellular r	96.77
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	96.76
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	96.75
1o6v_A	466	Internalin A; bacterial infection, extracellular r	96.72
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	96.71
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	96.57
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	96.5
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	96.5
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	96.45
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	96.34
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	95.92
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	95.4
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	94.98
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	93.33
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	93.3
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	92.82
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	92.65
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	92.42
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	92.15
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	90.33
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	85.59
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	84.25
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	83.1

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.47  E-value=3.5e-07  Score=69.48  Aligned_cols=84  Identities=18%  Similarity=0.314  Sum_probs=69.3

Q ss_pred             HHHHHHHHHhhhhc--eeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccC
Q psy18121         19 RSLERILEEAHLSG--ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYP   95 (109)
Q Consensus        19 rslerhLE~A~kTG--vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P   95 (109)
                      +.+...++.+..++  +|.|+++++.++|..+  ..+..-..+|| +.|  +|+++|..++++..|+.|++++ .+..+|
T Consensus        69 ~~~~~~l~~~~~~~l~~L~L~~n~l~~lp~~l--~~l~~L~~L~L-~~n--~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp  143 (328)
T 4fcg_A           69 KATADLLEDATQPGRVALELRSVPLPQFPDQA--FRLSHLQHMTI-DAA--GLMELPDTMQQFAGLETLTLARNPLRALP  143 (328)
T ss_dssp             HHHHHHHHHHTSTTCCEEEEESSCCSSCCSCG--GGGTTCSEEEE-ESS--CCCCCCSCGGGGTTCSEEEEESCCCCCCC
T ss_pred             hhhHHHHhcccccceeEEEccCCCchhcChhh--hhCCCCCEEEC-CCC--CccchhHHHhccCCCCEEECCCCccccCc
Confidence            45556677775555  6899999999999988  55765555999 888  9999999999999999999999 888999


Q ss_pred             chhhhhhhhhhc
Q psy18121         96 GLSMAIRKAQWL  107 (109)
Q Consensus        96 ~~~g~l~K~~~~  107 (109)
                      +.++.+.+-+.|
T Consensus       144 ~~l~~l~~L~~L  155 (328)
T 4fcg_A          144 ASIASLNRLREL  155 (328)
T ss_dssp             GGGGGCTTCCEE
T ss_pred             HHHhcCcCCCEE
Confidence            999888765543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.22  E-value=6.4e-07  Score=76.14  Aligned_cols=69  Identities=9%  Similarity=0.047  Sum_probs=45.6

Q ss_pred             eeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhhhhh
Q psy18121         33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRKAQW  106 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K~~~  106 (109)
                      +|.|+++++.++|..+  +.+..-..+|| |.|  +|+++|..|+.+..|+.|++++ .+.++|+.++.|.+-+.
T Consensus       228 ~L~Ls~n~l~~l~~~~--~~l~~L~~L~L-s~N--~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~  297 (727)
T 4b8c_D          228 ALDLSNLQIFNISANI--FKYDFLTRLYL-NGN--SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY  297 (727)
T ss_dssp             EEECTTSCCSCCCGGG--GGCCSCSCCBC-TTS--CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred             EEECCCCCCCCCChhh--cCCCCCCEEEe-eCC--cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence            5777777777777766  34543333777 666  6777777777777777777777 66677776666655443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.18  E-value=1.8e-06  Score=60.55  Aligned_cols=66  Identities=12%  Similarity=0.097  Sum_probs=36.1

Q ss_pred             ceeEecCCCCCCCCCC-CCCcccCCcEEEeeecCcccccccccccc-ccccccceEEecc-eeeccCch-hhhhh
Q psy18121         32 GELNLSGRKLKDFPNS-GGKYDLSDSVIVVYFSRSGRKLKDFPNSG-GKYDLSDSVIVVY-FNITYPGL-SMAIR  102 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~-~~~~dLsdtlrlDL~S~N~~rl~elP~~I-~~F~~LksL~~~~-~l~~~P~~-~g~l~  102 (109)
                      -+|.|+++++.++|.. +.  .+..-..+|| |.|  +|+.+|+.+ +.+..|+.|++++ .+..+|.. ++.+.
T Consensus        36 ~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L-s~N--~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~  105 (174)
T 2r9u_A           36 QRLWLNNNQITKLEPGVFD--HLVNLQQLYF-NSN--KLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLK  105 (174)
T ss_dssp             SEEECCSSCCCCCCTTTTT--TCTTCCEEEC-CSS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             cEEEeCCCCccccCHHHhc--CCcCCCEEEC-CCC--CCCccChhHhCCcchhhEEECCCCccceeCHHHhcccc
Confidence            3566666666666442 21  2333233666 666  666666653 5666666666666 66666653 44443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.15  E-value=1.1e-06  Score=74.64  Aligned_cols=71  Identities=21%  Similarity=0.225  Sum_probs=59.8

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhhhhhc
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRKAQWL  107 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K~~~~  107 (109)
                      -.|.|++++|.++|..+  ..|..-..+|| |.|  +|++||..|+.+..|+.|++++ .+.++|+.++.+.+-+.|
T Consensus       250 ~~L~Ls~N~l~~lp~~~--~~l~~L~~L~L-s~N--~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L  321 (727)
T 4b8c_D          250 TRLYLNGNSLTELPAEI--KNLSNLRVLDL-SHN--RLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFL  321 (727)
T ss_dssp             SCCBCTTSCCSCCCGGG--GGGTTCCEEEC-TTS--CCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCE
T ss_pred             CEEEeeCCcCcccChhh--hCCCCCCEEeC-cCC--cCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEE
Confidence            47889999999999887  44665455999 888  9999999999999999999999 888999998888765544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.15  E-value=2.4e-06  Score=61.61  Aligned_cols=68  Identities=13%  Similarity=0.111  Sum_probs=36.2

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc-eeeccCchhhhhhh
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYPGLSMAIRK  103 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P~~~g~l~K  103 (109)
                      -+|.|+++++.++|...- ..+..-..+|| |.|  +|+.+|+. ++.+..|+.|++++ .+.++|+.++.+.+
T Consensus        67 ~~L~L~~N~l~~i~~~~~-~~l~~L~~L~L-s~N--~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~  136 (229)
T 3e6j_A           67 KELYLGSNQLGALPVGVF-DSLTQLTVLDL-GTN--QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTH  136 (229)
T ss_dssp             CEEECCSSCCCCCCTTTT-TTCTTCCEEEC-CSS--CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTT
T ss_pred             cEEECCCCCCCCcChhhc-ccCCCcCEEEC-CCC--cCCccChhHhCcchhhCeEeccCCcccccCcccccCCC
Confidence            456666666666665430 11222222666 555  66666654 35566666666666 55566655554444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.13  E-value=3.1e-06  Score=58.82  Aligned_cols=70  Identities=10%  Similarity=0.031  Sum_probs=47.9

Q ss_pred             hceeEecCCCCCCCCCC-CCCcccCCcEEEeeecCcccccccccccc-ccccccceEEecc-eeeccCch-hhhhhhhh
Q psy18121         31 SGELNLSGRKLKDFPNS-GGKYDLSDSVIVVYFSRSGRKLKDFPNSG-GKYDLSDSVIVVY-FNITYPGL-SMAIRKAQ  105 (109)
Q Consensus        31 TGvL~Ls~rkLkeFP~~-~~~~dLsdtlrlDL~S~N~~rl~elP~~I-~~F~~LksL~~~~-~l~~~P~~-~g~l~K~~  105 (109)
                      .-+|.|++++++++|.. +.  .+..-..+|| |.|  +|+.+|+.+ ..+..|+.|++++ .+..+|.. ++.+.+-+
T Consensus        32 l~~L~L~~N~i~~~~~~~~~--~l~~L~~L~L-s~N--~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  105 (170)
T 3g39_A           32 TQVLYLYDNQITKLEPGVFD--RLTQLTRLDL-DNN--QLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLT  105 (170)
T ss_dssp             CSEEECCSSCCCCCCTTTTT--TCTTCSEEEC-CSS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CcEEEcCCCcCCccChhhhc--CcccCCEEEC-CCC--CcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCC
Confidence            35678888888888554 42  2444444888 777  888888864 7888888888888 77777764 55555433

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.10  E-value=3.6e-06  Score=58.98  Aligned_cols=68  Identities=7%  Similarity=-0.038  Sum_probs=54.8

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeeccCchh-hhhhhhhh
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYPGLS-MAIRKAQW  106 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P~~~-g~l~K~~~  106 (109)
                      .++.+++++|.++|..+.    .....+|| +.|  +|+.+|+ .++.+..|+.|++++ .+..+|..+ +.+.+-+.
T Consensus        15 ~~l~~~~n~l~~iP~~~~----~~L~~L~L-s~N--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~   85 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP----TDKQRLWL-NNN--QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ   85 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC----TTCSEEEC-CSS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cEEEeCCCCCCccCCCcC----CCCcEEEe-CCC--CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhE
Confidence            478999999999999762    33334999 999  9999955 689999999999999 999999864 55555443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.09  E-value=4e-06  Score=58.96  Aligned_cols=65  Identities=12%  Similarity=0.122  Sum_probs=35.9

Q ss_pred             eeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccc--cccccccceEEecc-eeecc-Cchhhhhhhh
Q psy18121         33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNS--GGKYDLSDSVIVVY-FNITY-PGLSMAIRKA  104 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~--I~~F~~LksL~~~~-~l~~~-P~~~g~l~K~  104 (109)
                      ++.+++++|+++|..+..    ....+|+ +.|  +|+.+|+.  ++.+..|+.|++++ .+..+ |+.++.+.+-
T Consensus        12 ~l~~s~~~l~~ip~~~~~----~l~~L~l-~~n--~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   80 (192)
T 1w8a_A           12 TVDCTGRGLKEIPRDIPL----HTTELLL-NDN--ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI   80 (192)
T ss_dssp             EEECTTSCCSSCCSCCCT----TCSEEEC-CSC--CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             EEEcCCCCcCcCccCCCC----CCCEEEC-CCC--cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC
Confidence            456666666666665411    2223666 555  66666653  56666666666666 55544 4555544443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.06  E-value=4e-06  Score=60.45  Aligned_cols=68  Identities=13%  Similarity=0.066  Sum_probs=53.0

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCc-hhhhhhh
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPG-LSMAIRK  103 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~-~~g~l~K  103 (109)
                      -+|.|+++++..+|...- ..+..-..+|| +.|  +|+++|..+..+..|+.|++++ .+..+|. .+..+.+
T Consensus        91 ~~L~Ls~N~l~~l~~~~~-~~l~~L~~L~L-s~N--~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  160 (229)
T 3e6j_A           91 TVLDLGTNQLTVLPSAVF-DRLVHLKELFM-CCN--KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS  160 (229)
T ss_dssp             CEEECCSSCCCCCCTTTT-TTCTTCCEEEC-CSS--CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CEEECCCCcCCccChhHh-CcchhhCeEec-cCC--cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCC
Confidence            579999999999998651 12443333999 888  9999999999999999999999 8888885 3444443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.03  E-value=6.5e-06  Score=57.18  Aligned_cols=58  Identities=9%  Similarity=0.089  Sum_probs=28.4

Q ss_pred             eeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeeccCch
Q psy18121         33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYPGL   97 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P~~   97 (109)
                      ++.+++++|+++|..+    ......+|| +.|  +|+.+|+ .++.+..|+.|++++ .+..+|..
T Consensus        13 ~l~~s~n~l~~ip~~~----~~~l~~L~L-~~N--~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~   72 (170)
T 3g39_A           13 TVDCSGKSLASVPTGI----PTTTQVLYL-YDN--QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG   72 (170)
T ss_dssp             EEECTTSCCSSCCSCC----CTTCSEEEC-CSS--CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred             EEEeCCCCcCccCccC----CCCCcEEEc-CCC--cCCccChhhhcCcccCCEEECCCCCcCccChh
Confidence            4555555555555443    112222555 555  5555533 355555555555555 55555543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.01  E-value=7.2e-06  Score=58.16  Aligned_cols=59  Identities=19%  Similarity=0.235  Sum_probs=29.8

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeeccC
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYP   95 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P   95 (109)
                      -+|.|+++++.++|..+  ..+..-..+|| |.|  +|+.+|+ .++.+..|+.|++++ .+..+|
T Consensus        34 ~~L~L~~n~i~~ip~~~--~~l~~L~~L~L-s~N--~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~   94 (193)
T 2wfh_A           34 TELYLDGNQFTLVPKEL--SNYKHLTLIDL-SNN--RISTLSNQSFSNMTQLLTLILSYNRLRCIP   94 (193)
T ss_dssp             CEEECCSSCCCSCCGGG--GGCTTCCEEEC-CSS--CCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             CEEECCCCcCchhHHHh--hcccCCCEEEC-CCC--cCCEeCHhHccCCCCCCEEECCCCccCEeC
Confidence            34555555555555433  22333223555 555  5555554 255555566666655 555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.99  E-value=5.8e-06  Score=68.65  Aligned_cols=65  Identities=11%  Similarity=-0.003  Sum_probs=46.9

Q ss_pred             eeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhhh
Q psy18121         33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRKA  104 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K~  104 (109)
                      +|.|++++|.++|. +  ..+..-..+|| |.|  +|+++|..++.+..|+.|++++ .+..+| .++.+.+-
T Consensus       445 ~L~Ls~n~l~~lp~-~--~~l~~L~~L~L-s~N--~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L  510 (567)
T 1dce_A          445 VLHLAHKDLTVLCH-L--EQLLLVTHLDL-SHN--RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRL  510 (567)
T ss_dssp             EEECTTSCCSSCCC-G--GGGTTCCEEEC-CSS--CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSC
T ss_pred             EEEecCCCCCCCcC-c--cccccCcEeec-Ccc--cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCC
Confidence            68888888888886 5  33554444888 777  7888888888888888888877 777777 55555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.96  E-value=6.2e-06  Score=68.50  Aligned_cols=71  Identities=13%  Similarity=0.069  Sum_probs=60.6

Q ss_pred             hceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeecc--Cchhhhhhhhhhc
Q psy18121         31 SGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITY--PGLSMAIRKAQWL  107 (109)
Q Consensus        31 TGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~--P~~~g~l~K~~~~  107 (109)
                      =-.|.|++++|.++|..+  ..+..-..+|| |.|  +|+.+| .++.+..|+.|++++ .+..+  |+.++.+.+-+.|
T Consensus       465 L~~L~Ls~N~l~~lp~~~--~~l~~L~~L~L-s~N--~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L  538 (567)
T 1dce_A          465 VTHLDLSHNRLRALPPAL--AALRCLEVLQA-SDN--ALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL  538 (567)
T ss_dssp             CCEEECCSSCCCCCCGGG--GGCTTCCEEEC-CSS--CCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred             CcEeecCcccccccchhh--hcCCCCCEEEC-CCC--CCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence            357999999999999987  44765555999 999  999999 899999999999999 88888  8999888765543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=97.96  E-value=7e-06  Score=62.30  Aligned_cols=64  Identities=11%  Similarity=0.166  Sum_probs=50.1

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc--eeeccCchhhh
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY--FNITYPGLSMA  100 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~--~l~~~P~~~g~  100 (109)
                      -+|.|+++++.++|..+  ..+..-..+|+ +.|  +|+.+|..++.+..|+.|++++  .+..+|+.++.
T Consensus       107 ~~L~L~~n~l~~lp~~~--~~l~~L~~L~L-s~n--~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~  172 (328)
T 4fcg_A          107 QHMTIDAAGLMELPDTM--QQFAGLETLTL-ARN--PLRALPASIASLNRLRELSIRACPELTELPEPLAS  172 (328)
T ss_dssp             SEEEEESSCCCCCCSCG--GGGTTCSEEEE-ESC--CCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE
T ss_pred             CEEECCCCCccchhHHH--hccCCCCEEEC-CCC--ccccCcHHHhcCcCCCEEECCCCCCccccChhHhh
Confidence            57889999999999877  44665445899 888  8889998888888888888887  56677776543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.92  E-value=3.9e-06  Score=57.75  Aligned_cols=59  Identities=5%  Similarity=0.042  Sum_probs=28.3

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccccc-ccccccceEEecc-eeeccCc
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSG-GKYDLSDSVIVVY-FNITYPG   96 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I-~~F~~LksL~~~~-~l~~~P~   96 (109)
                      -.|.|+++++.++ ..+.  .+..-..+|+ |.|  +|+.+|+.+ +.+..|+.|++++ .+..+|+
T Consensus        45 ~~L~Ls~N~l~~~-~~l~--~l~~L~~L~L-s~N--~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~  105 (176)
T 1a9n_A           45 DAIDFSDNEIRKL-DGFP--LLRRLKTLLV-NNN--RICRIGEGLDQALPDLTELILTNNSLVELGD  105 (176)
T ss_dssp             SEEECCSSCCCEE-CCCC--CCSSCCEEEC-CSS--CCCEECSCHHHHCTTCCEEECCSCCCCCGGG
T ss_pred             CEEECCCCCCCcc-cccc--cCCCCCEEEC-CCC--cccccCcchhhcCCCCCEEECCCCcCCcchh
Confidence            3455555555555 2221  1222222555 555  555555444 5555555555555 4444554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.88  E-value=1.5e-05  Score=54.57  Aligned_cols=62  Identities=19%  Similarity=0.217  Sum_probs=30.9

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc-eeeccCch
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYPGL   97 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P~~   97 (109)
                      -+|.|+++++.++|...- ..+..-..+|+ +.|  +|+.+|+. ++.+..|+.|++++ .+..+|..
T Consensus        55 ~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l-~~N--~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  118 (177)
T 2o6r_A           55 TKLSLSQNQIQSLPDGVF-DKLTKLTILYL-HEN--KLQSLPNGVFDKLTQLKELALDTNQLKSVPDG  118 (177)
T ss_dssp             SEEECCSSCCCCCCTTTT-TTCTTCCEEEC-CSS--CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             cEEECCCCcceEeChhHc-cCCCccCEEEC-CCC--CccccCHHHhhCCcccCEEECcCCcceEeCHH
Confidence            345555555555554430 11222222555 555  56655554 35555666666655 55555543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.81  E-value=2e-05  Score=56.82  Aligned_cols=60  Identities=18%  Similarity=0.195  Sum_probs=27.1

Q ss_pred             eeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeeccCc
Q psy18121         33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYPG   96 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P~   96 (109)
                      +|.|+++++.++|...- ..+..-..+|| +.|  +|+.+|+ .++.+..|++|++++ .+..+|.
T Consensus       111 ~L~L~~N~l~~~~~~~~-~~l~~L~~L~L-s~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  172 (251)
T 3m19_A          111 KLYLGGNQLKSLPSGVF-DRLTKLKELRL-NTN--QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH  172 (251)
T ss_dssp             EEECCSSCCCCCCTTTT-TTCTTCCEEEC-CSS--CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             EEEcCCCcCCCcChhHh-ccCCcccEEEC-cCC--cCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence            44444444444444320 01222222555 555  5555555 345555555555555 4444443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.79  E-value=2.4e-05  Score=56.42  Aligned_cols=67  Identities=15%  Similarity=0.153  Sum_probs=39.7

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccc-cccccccceEEecc-eeeccCc-hhhhhhh
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYPG-LSMAIRK  103 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P~-~~g~l~K  103 (109)
                      .+|.|+++++.++|...- ..+ ..++ +|| +.|  +|+.+|+. ++.+..|+.|++++ .+..+|. .++.+.+
T Consensus        86 ~~L~L~~n~l~~~~~~~~-~~l-~~L~~L~L-~~N--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  156 (251)
T 3m19_A           86 GTLGLANNQLASLPLGVF-DHL-TQLDKLYL-GGN--QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN  156 (251)
T ss_dssp             CEEECTTSCCCCCCTTTT-TTC-TTCCEEEC-CSS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CEEECCCCcccccChhHh-ccc-CCCCEEEc-CCC--cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence            456666666666665430 113 2344 777 666  77777765 36677777777777 6666665 3444443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.78  E-value=1.9e-05  Score=65.16  Aligned_cols=69  Identities=13%  Similarity=0.203  Sum_probs=45.9

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCC-------cEE-EeeecCccccccccccccc--cccccceEEecc-eeeccCchhhh
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSD-------SVI-VVYFSRSGRKLKDFPNSGG--KYDLSDSVIVVY-FNITYPGLSMA  100 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsd-------tlr-lDL~S~N~~rl~elP~~I~--~F~~LksL~~~~-~l~~~P~~~g~  100 (109)
                      -.|.|+++++.++|...  +....       .++ +|+ |.|  +|+++|..++  .+..|+.|++++ .+..+|..++.
T Consensus       460 ~~L~Ls~N~l~~i~~~~--~~~~~~~~~~l~~L~~L~L-s~N--~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~  534 (636)
T 4eco_A          460 SSINLMGNMLTEIPKNS--LKDENENFKNTYLLTSIDL-RFN--KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLN  534 (636)
T ss_dssp             SEEECCSSCCSBCCSSS--SEETTEECTTGGGCCEEEC-CSS--CCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGG
T ss_pred             CEEECCCCCCCCcCHHH--hccccccccccCCccEEEC-cCC--cCCccChhhhhccCCCcCEEECCCCCCCCcChhhhc
Confidence            46777777777777765  22221       344 777 777  7777777776  777777777777 66667777766


Q ss_pred             hhhhh
Q psy18121        101 IRKAQ  105 (109)
Q Consensus       101 l~K~~  105 (109)
                      +.+-+
T Consensus       535 l~~L~  539 (636)
T 4eco_A          535 SSTLK  539 (636)
T ss_dssp             CSSCC
T ss_pred             CCCCC
Confidence            65444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.78  E-value=2.5e-05  Score=56.07  Aligned_cols=62  Identities=13%  Similarity=0.124  Sum_probs=35.2

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccc-ccccccccccceEEecc-eeeccCch
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDF-PNSGGKYDLSDSVIVVY-FNITYPGL   97 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~el-P~~I~~F~~LksL~~~~-~l~~~P~~   97 (109)
                      -+|.|++++++++|...- ..+..-..+|| +.|  +|+.+ |..++.+..|+.|++++ .+..+|..
T Consensus        35 ~~L~l~~n~i~~i~~~~~-~~l~~L~~L~L-s~N--~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~   98 (220)
T 2v9t_B           35 TEIRLEQNTIKVIPPGAF-SPYKKLRRIDL-SNN--QISELAPDAFQGLRSLNSLVLYGNKITELPKS   98 (220)
T ss_dssp             CEEECCSSCCCEECTTSS-TTCTTCCEEEC-CSS--CCCEECTTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred             CEEECCCCcCCCcCHhHh-hCCCCCCEEEC-CCC--cCCCcCHHHhhCCcCCCEEECCCCcCCccCHh
Confidence            355666666666655320 11332222666 666  66666 44566677777777776 66666654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.78  E-value=8.9e-06  Score=60.77  Aligned_cols=67  Identities=10%  Similarity=-0.128  Sum_probs=47.1

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhhh
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRKA  104 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K~  104 (109)
                      -+|.|+++++.++|....   +..-..+|+ |.|  +++.+|+.++.+..|+.|++++ .+.++|+.++.+.+-
T Consensus       172 ~~L~L~~N~l~~~~~~~~---l~~L~~L~L-s~N--~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L  239 (317)
T 3o53_A          172 EHLNLQYNFIYDVKGQVV---FAKLKTLDL-SSN--KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL  239 (317)
T ss_dssp             CEEECTTSCCCEEECCCC---CTTCCEEEC-CSS--CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTC
T ss_pred             CEEECCCCcCcccccccc---cccCCEEEC-CCC--cCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCC
Confidence            567777777777765541   333233888 777  8888888888888888888888 777788776655443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.78  E-value=2e-05  Score=56.56  Aligned_cols=66  Identities=12%  Similarity=0.045  Sum_probs=31.1

Q ss_pred             eeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccc-cccccccccceEEecc-eeecc-Cchhhhhh
Q psy18121         33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFP-NSGGKYDLSDSVIVVY-FNITY-PGLSMAIR  102 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP-~~I~~F~~LksL~~~~-~l~~~-P~~~g~l~  102 (109)
                      +|.|+++++..+|...- ..+..-..+|| |.|  +|+.+| ..++.+..|+.|++++ .+..+ |+.++.+.
T Consensus        85 ~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L-s~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  153 (220)
T 2v70_A           85 EILLTSNRLENVQHKMF-KGLESLKTLML-RSN--RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH  153 (220)
T ss_dssp             EEECCSSCCCCCCGGGG-TTCSSCCEEEC-TTS--CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCT
T ss_pred             EEECCCCccCccCHhHh-cCCcCCCEEEC-CCC--cCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCC
Confidence            44555555555554320 11222222555 555  555552 3455555566666655 55544 44444443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.77  E-value=2.7e-05  Score=54.35  Aligned_cols=35  Identities=11%  Similarity=0.168  Sum_probs=16.4

Q ss_pred             EeeecCccccccccccc-cccccccceEEecc-eeeccCc
Q psy18121         59 VVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYPG   96 (109)
Q Consensus        59 lDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P~   96 (109)
                      +|+ +.|  +|+.+|+. ++.+..|++|++++ .+..+|.
T Consensus       105 L~L-~~N--~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  141 (208)
T 2o6s_A          105 LAL-NTN--QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD  141 (208)
T ss_dssp             EEC-CSS--CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             EEc-CCC--cCcccCHhHhccCCcCCEEECCCCccceeCH
Confidence            444 444  45444443 34445555555544 4444443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.77  E-value=2.9e-05  Score=54.99  Aligned_cols=61  Identities=11%  Similarity=0.120  Sum_probs=31.9

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeeccCc
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYPG   96 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P~   96 (109)
                      -.|.|+++++.++|...- ..+..-..+|| |.|  +|+.+|+ .++.+..|+.|++++ .+..+|.
T Consensus        57 ~~L~Ls~N~i~~i~~~~f-~~l~~L~~L~L-s~N--~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~  119 (193)
T 2wfh_A           57 TLIDLSNNRISTLSNQSF-SNMTQLLTLIL-SYN--RLRCIPPRTFDGLKSLRLLSLHGNDISVVPE  119 (193)
T ss_dssp             CEEECCSSCCCCCCTTTT-TTCTTCCEEEC-CSS--CCCBCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred             CEEECCCCcCCEeCHhHc-cCCCCCCEEEC-CCC--ccCEeCHHHhCCCCCCCEEECCCCCCCeeCh
Confidence            355666666666654320 11332222666 555  5666655 355566666666665 5555554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.76  E-value=2.5e-05  Score=51.83  Aligned_cols=66  Identities=9%  Similarity=-0.007  Sum_probs=37.6

Q ss_pred             ceeEecCCCCC--CCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeec-cCchhhhhhh
Q psy18121         32 GELNLSGRKLK--DFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNIT-YPGLSMAIRK  103 (109)
Q Consensus        32 GvL~Ls~rkLk--eFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~-~P~~~g~l~K  103 (109)
                      -.|.++++++.  ++|....  .+..-..+|+ +.|  +++.+ ..++.+..|+.|++++ .+.. +|+.++.+.+
T Consensus        20 ~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~l-~~n--~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~   89 (149)
T 2je0_A           20 KELVLDNSRSNEGKLEGLTD--EFEELEFLST-INV--GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN   89 (149)
T ss_dssp             SEEECTTCBCBTTBCCSCCT--TCTTCCEEEC-TTS--CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred             eEEEccCCcCChhHHHHHHh--hcCCCcEEEC-cCC--CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence            45677777776  6666542  2433333666 655  66666 5566666666666666 4444 5555444443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.76  E-value=1.6e-05  Score=62.01  Aligned_cols=59  Identities=12%  Similarity=0.075  Sum_probs=26.7

Q ss_pred             ceeEecCCCCCCCCCC-CCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc-eeeccC
Q psy18121         32 GELNLSGRKLKDFPNS-GGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYP   95 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~-~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P   95 (109)
                      -+|.|++++++++|.. +.  .++.-..+|| |.|  +|+.+|+. ++.+..|++|++++ .+..+|
T Consensus        55 ~~LdLs~N~i~~l~~~~f~--~l~~L~~L~L-s~N--~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~  116 (635)
T 4g8a_A           55 KNLDLSFNPLRHLGSYSFF--SFPELQVLDL-SRC--EIQTIEDGAYQSLSHLSTLILTGNPIQSLA  116 (635)
T ss_dssp             CEEECTTSCCCEECTTTTT--TCTTCCEEEC-TTC--CCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred             CEEEeeCCCCCCCCHHHHh--CCCCCCEEEC-CCC--cCCCcChhHhcCCCCCCEEEccCCcCCCCC
Confidence            3455555555555442 21  1322222555 444  55555442 44455555555555 444444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.75  E-value=3.1e-05  Score=52.31  Aligned_cols=68  Identities=10%  Similarity=-0.035  Sum_probs=43.0

Q ss_pred             hceeEecCCCCC--CCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeec-cCchhhhhhhh
Q psy18121         31 SGELNLSGRKLK--DFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNIT-YPGLSMAIRKA  104 (109)
Q Consensus        31 TGvL~Ls~rkLk--eFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~-~P~~~g~l~K~  104 (109)
                      --+|.|+++++.  ++|..+  ..+..-..+|+ +.|  +++.+ ..++.+..|+.|++++ .+.. +|+.++.+.+-
T Consensus        26 L~~L~l~~n~l~~~~i~~~~--~~l~~L~~L~l-~~n--~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   97 (168)
T 2ell_A           26 VRELVLDNCKSNDGKIEGLT--AEFVNLEFLSL-INV--GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL   97 (168)
T ss_dssp             CSEEECCSCBCBTTBCSSCC--GGGGGCCEEEE-ESS--CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred             CCEEECCCCCCChhhHHHHH--HhCCCCCEEeC-cCC--CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence            356778888887  777765  22433333777 666  67777 6666777777777777 5555 56555544443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.75  E-value=1.9e-05  Score=54.30  Aligned_cols=61  Identities=5%  Similarity=0.035  Sum_probs=34.8

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCcccccccccc--ccccccccceEEecc-eeeccCch
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPN--SGGKYDLSDSVIVVY-FNITYPGL   97 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~--~I~~F~~LksL~~~~-~l~~~P~~   97 (109)
                      -+|.|+++++.++|...- ..+. .++ +|+ +.|  +|.++|.  .++.+..|++|.+++ .+..+|+.
T Consensus        67 ~~L~Ls~N~l~~~~~~~~-~~l~-~L~~L~L-~~N--~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~  131 (176)
T 1a9n_A           67 KTLLVNNNRICRIGEGLD-QALP-DLTELIL-TNN--SLVELGDLDPLASLKSLTYLCILRNPVTNKKHY  131 (176)
T ss_dssp             CEEECCSSCCCEECSCHH-HHCT-TCCEEEC-CSC--CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTH
T ss_pred             CEEECCCCcccccCcchh-hcCC-CCCEEEC-CCC--cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhH
Confidence            356666666666665430 0122 233 666 666  6666665  566666666666666 55566653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.75  E-value=2.7e-05  Score=58.27  Aligned_cols=64  Identities=19%  Similarity=0.210  Sum_probs=36.8

Q ss_pred             eeEecCCCCCCCCCCCCCcc-cCCcEEEeeecCcccccccccccc-ccccccceEEecc-eeeccCchhhhh
Q psy18121         33 ELNLSGRKLKDFPNSGGKYD-LSDSVIVVYFSRSGRKLKDFPNSG-GKYDLSDSVIVVY-FNITYPGLSMAI  101 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~~~~~d-LsdtlrlDL~S~N~~rl~elP~~I-~~F~~LksL~~~~-~l~~~P~~~g~l  101 (109)
                      .|.|+++++.++|...  +. +..-..+|| +.|  +|+.+|+.+ ..+..|+.|++++ .+.++|+.+...
T Consensus       128 ~L~L~~N~l~~~~~~~--~~~l~~L~~L~L-~~N--~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~  194 (290)
T 1p9a_G          128 ELYLKGNELKTLPPGL--LTPTPKLEKLSL-ANN--NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS  194 (290)
T ss_dssp             EEECTTSCCCCCCTTT--TTTCTTCCEEEC-TTS--CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             EEECCCCCCCccChhh--cccccCCCEEEC-CCC--cCCccCHHHhcCcCCCCEEECCCCcCCccChhhccc
Confidence            4556666666666543  21 222222666 666  666666653 5566777777766 666666655443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.74  E-value=2.3e-05  Score=61.16  Aligned_cols=67  Identities=7%  Similarity=-0.098  Sum_probs=53.0

Q ss_pred             eeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeeccCc-hhhhhhhhhh
Q psy18121         33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYPG-LSMAIRKAQW  106 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P~-~~g~l~K~~~  106 (109)
                      +..=++++|.++|..+.    +++..+|| |.|  +|+++|+ .++.+..|+.|++++ .+..+|+ .++-+++-+.
T Consensus        35 ~~~c~~~~l~~vP~~lp----~~~~~LdL-s~N--~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~  104 (635)
T 4g8a_A           35 TYQCMELNFYKIPDNLP----FSTKNLDL-SFN--PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST  104 (635)
T ss_dssp             EEECTTSCCSSCCSSSC----TTCCEEEC-TTS--CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             EEECCCCCcCccCCCCC----cCCCEEEe-eCC--CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCE
Confidence            45568899999998752    24455999 999  9999997 689999999999999 8888865 4666655443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.74  E-value=2.9e-05  Score=54.48  Aligned_cols=65  Identities=14%  Similarity=0.055  Sum_probs=31.5

Q ss_pred             eeEecCCCCCCCCC-CCCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc-eeecc-Cchhhhhh
Q psy18121         33 ELNLSGRKLKDFPN-SGGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITY-PGLSMAIR  102 (109)
Q Consensus        33 vL~Ls~rkLkeFP~-~~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~-P~~~g~l~  102 (109)
                      .|.|+++++..++. .+.  .+..-..+|| |.|  +|+.+|+. ++.+..|++|++++ .+..+ |+.++.+.
T Consensus        58 ~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L-s~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  126 (192)
T 1w8a_A           58 KLELKRNQLTGIEPNAFE--GASHIQELQL-GEN--KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN  126 (192)
T ss_dssp             EEECCSSCCCCBCTTTTT--TCTTCCEEEC-CSC--CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT
T ss_pred             EEECCCCCCCCcCHhHcC--CcccCCEEEC-CCC--cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCC
Confidence            45555555555532 221  1332222555 555  56555554 55556666666665 44433 44444443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.74  E-value=2e-05  Score=56.59  Aligned_cols=60  Identities=13%  Similarity=0.113  Sum_probs=27.0

Q ss_pred             eeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeeccC
Q psy18121         33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYP   95 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P   95 (109)
                      +|.|+++++.++|....-..+..-..+|| +.|  +|+.+|+ .++.+..|+.|++++ .+..+|
T Consensus        36 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L-~~N--~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~   97 (220)
T 2v70_A           36 ELRLNNNEFTVLEATGIFKKLPQLRKINF-SNN--KITDIEEGAFEGASGVNEILLTSNRLENVQ   97 (220)
T ss_dssp             EEECCSSCCCEECCCCCGGGCTTCCEEEC-CSS--CCCEECTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             EEEcCCCcCCccCchhhhccCCCCCEEEC-CCC--cCCEECHHHhCCCCCCCEEECCCCccCccC
Confidence            55566666655533210012322222555 444  5555554 344555555555554 444443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.74  E-value=4.2e-05  Score=52.27  Aligned_cols=69  Identities=14%  Similarity=0.152  Sum_probs=47.4

Q ss_pred             hceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc-eeeccCch-hhhhhh
Q psy18121         31 SGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYPGL-SMAIRK  103 (109)
Q Consensus        31 TGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P~~-~g~l~K  103 (109)
                      -..|.|+++++.++|...- ..+..-..+|+ +.|  +|+.+|+. ++.+..|+.|++++ .+..+|.. ++.+.+
T Consensus        30 l~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l-~~n--~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~  101 (177)
T 2o6r_A           30 ATRLELESNKLQSLPHGVF-DKLTQLTKLSL-SQN--QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQ  101 (177)
T ss_dssp             CSEEECCSSCCCCCCTTTT-TTCTTCSEEEC-CSS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CcEEEeCCCcccEeCHHHh-cCcccccEEEC-CCC--cceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcc
Confidence            3578888888888887541 12333333888 777  88888876 47888888888888 77777764 344433

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.73  E-value=3.5e-05  Score=53.76  Aligned_cols=60  Identities=25%  Similarity=0.314  Sum_probs=31.3

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccc-cccccccceEEecc-eeeccCc
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYPG   96 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P~   96 (109)
                      -+|.|++++++++|...- ..+. .++ +|+ +.|  +|+.+|+. ++.+..|+.|++++ .+..+|.
T Consensus        55 ~~L~l~~n~l~~~~~~~~-~~l~-~L~~L~L-s~n--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  117 (208)
T 2o6s_A           55 TQLYLGGNKLQSLPNGVF-NKLT-SLTYLNL-STN--QLQSLPNGVFDKLTQLKELALNTNQLQSLPD  117 (208)
T ss_dssp             SEEECCSSCCCCCCTTTT-TTCT-TCCEEEC-CSS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cEEECCCCccCccChhhc-CCCC-CcCEEEC-CCC--cCCccCHhHhcCccCCCEEEcCCCcCcccCH
Confidence            345555555555555430 0122 233 666 555  56666654 35666666666665 5555554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=97.73  E-value=3.4e-05  Score=57.94  Aligned_cols=66  Identities=12%  Similarity=0.041  Sum_probs=45.7

Q ss_pred             hhceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCcccccccccc-ccccccccceEEecc-eeeccC-chhhhhhh
Q psy18121         30 LSGELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYP-GLSMAIRK  103 (109)
Q Consensus        30 kTGvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P-~~~g~l~K  103 (109)
                      ..|++.+++++|+++|....     ..++ +|+ +.|  +++++|+ .++.+..|++|++++ .+..+| +.++.+.+
T Consensus        32 ~~~~c~~~~~~l~~iP~~~~-----~~L~~L~l-~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  101 (353)
T 2z80_A           32 RNGICKGSSGSLNSIPSGLT-----EAVKSLDL-SNN--RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS  101 (353)
T ss_dssp             TTSEEECCSTTCSSCCTTCC-----TTCCEEEC-TTS--CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             CCeEeeCCCCCccccccccc-----ccCcEEEC-CCC--cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC
Confidence            45788889999999988652     2344 788 777  7777777 677777777777777 555553 44554444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.73  E-value=4.1e-05  Score=56.80  Aligned_cols=64  Identities=14%  Similarity=0.184  Sum_probs=31.7

Q ss_pred             eeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeecc-Cchhhhhhh
Q psy18121         33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITY-PGLSMAIRK  103 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~-P~~~g~l~K  103 (109)
                      ++.++++++.++|....    .....+|+ +.|  +++++|+ .++.+..|+.|++++ .+..+ |+.++.+++
T Consensus        35 ~l~~~~~~l~~lp~~~~----~~l~~L~L-~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  101 (330)
T 1xku_A           35 VVQCSDLGLEKVPKDLP----PDTALLDL-QNN--KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK  101 (330)
T ss_dssp             EEECTTSCCCSCCCSCC----TTCCEEEC-CSS--CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred             EEEecCCCccccCccCC----CCCeEEEC-CCC--cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCC
Confidence            45555556666655431    11222555 555  5555555 455555555555555 44444 444444443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.70  E-value=3.8e-05  Score=55.14  Aligned_cols=61  Identities=15%  Similarity=0.059  Sum_probs=34.9

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeeccCc
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYPG   96 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P~   96 (109)
                      -+|.|+++++.++|...- ..+..-..+|| +.|  +|+.+|+ .++.+..|+.|++++ .+..+|.
T Consensus        83 ~~L~Ls~N~l~~l~~~~f-~~l~~L~~L~L-~~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  145 (220)
T 2v9t_B           83 NSLVLYGNKITELPKSLF-EGLFSLQLLLL-NAN--KINCLRVDAFQDLHNLNLLSLYDNKLQTIAK  145 (220)
T ss_dssp             CEEECCSSCCCCCCTTTT-TTCTTCCEEEC-CSS--CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CEEECCCCcCCccCHhHc-cCCCCCCEEEC-CCC--CCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence            356666666666666530 11332222666 666  6666644 456666777777766 6666654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.68  E-value=2.1e-05  Score=53.13  Aligned_cols=28  Identities=21%  Similarity=0.106  Sum_probs=11.9

Q ss_pred             cccccc--cccccccccceEEecc-eeeccC
Q psy18121         68 KLKDFP--NSGGKYDLSDSVIVVY-FNITYP   95 (109)
Q Consensus        68 rl~elP--~~I~~F~~LksL~~~~-~l~~~P   95 (109)
                      +|+.+|  ..++.+..|++|++++ .+..+|
T Consensus       106 ~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~  136 (168)
T 2ell_A          106 KLKDISTLEPLKKLECLKSLDLFNCEVTNLN  136 (168)
T ss_dssp             SCCSSGGGGGGSSCSCCCEEECCSSGGGTST
T ss_pred             ccCcchhHHHHhcCCCCCEEEeeCCcCcchH
Confidence            444443  3344444444444444 333443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.67  E-value=2.3e-05  Score=58.56  Aligned_cols=62  Identities=10%  Similarity=-0.037  Sum_probs=35.5

Q ss_pred             ceeEecC-CCCCCCCCC-CCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc-eeeccCchh
Q psy18121         32 GELNLSG-RKLKDFPNS-GGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYPGLS   98 (109)
Q Consensus        32 GvL~Ls~-rkLkeFP~~-~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P~~~   98 (109)
                      -.|.|++ ++|..+|.. +  ..|..-..+|| |.|  +|+.+|+. ++.+..|+.|++++ .+..+|..+
T Consensus        34 ~~L~l~~~n~l~~~~~~~~--~~l~~L~~L~l-~~N--~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~   99 (347)
T 2ifg_A           34 TELYIENQQHLQHLELRDL--RGLGELRNLTI-VKS--GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT   99 (347)
T ss_dssp             SEEECCSCSSCCEECGGGS--CSCCCCSEEEC-CSS--CCCEECTTGGGSCSCCCEEECCSSCCSCCCSTT
T ss_pred             eEEEccCCCCCCCcChhHh--ccccCCCEEEC-CCC--ccceeCHHHhcCCcCCCEEeCCCCccceeCHHH
Confidence            3566664 666666643 3  12433233666 666  66666653 46666666666666 666666543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.67  E-value=4e-05  Score=57.22  Aligned_cols=68  Identities=6%  Similarity=-0.113  Sum_probs=54.6

Q ss_pred             eeEecCC-CCCCCCCCCCCcccCCcEEEeeecC-cccccccccc-ccccccccceEEecc-eeeccCc-hhhhhhhhhh
Q psy18121         33 ELNLSGR-KLKDFPNSGGKYDLSDSVIVVYFSR-SGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYPG-LSMAIRKAQW  106 (109)
Q Consensus        33 vL~Ls~r-kLkeFP~~~~~~dLsdtlrlDL~S~-N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P~-~~g~l~K~~~  106 (109)
                      .+.++++ +|.++|. +.  .++....+|| |. |  +|+.+|+ .++.+..|+.|++++ .+..+|. .++.+.+-+.
T Consensus        12 ~v~~~~~n~l~~ip~-l~--~~~~L~~L~l-~~~n--~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~   84 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LP--GAENLTELYI-ENQQ--HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (347)
T ss_dssp             CEECCSSCCCTTTTT-SC--SCSCCSEEEC-CSCS--SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             EEEcCCCCCCCccCC-CC--CCCCeeEEEc-cCCC--CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCE
Confidence            5688999 9999999 74  3665566999 85 8  9999996 689999999999999 8888765 5566665443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.64  E-value=3.4e-05  Score=60.38  Aligned_cols=67  Identities=9%  Similarity=-0.060  Sum_probs=42.6

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeecc-Cchhhhhhhhh
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITY-PGLSMAIRKAQ  105 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~-P~~~g~l~K~~  105 (109)
                      .++.+++++|+++|..+.    .....+|+ |.|  +++.+|+ .++.+..|+.|++++ .+..+ |+.++-+++-+
T Consensus         3 ~~l~ls~n~l~~ip~~~~----~~L~~L~L-s~n--~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~   72 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS----QKTTILNI-SQN--YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE   72 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC----TTCSEEEC-CSS--CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCC
T ss_pred             ceEecCCCCccccccccc----ccccEEEC-CCC--cccccChhhccccccccEEecCCCccCCcChHHhhcccCCC
Confidence            567777777777776552    22233777 766  6777764 567777777777777 55555 55666555443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.62  E-value=1.6e-05  Score=52.75  Aligned_cols=35  Identities=17%  Similarity=0.086  Sum_probs=16.8

Q ss_pred             EeeecCccccccccc--cccccccccceEEecc-eeeccCc
Q psy18121         59 VVYFSRSGRKLKDFP--NSGGKYDLSDSVIVVY-FNITYPG   96 (109)
Q Consensus        59 lDL~S~N~~rl~elP--~~I~~F~~LksL~~~~-~l~~~P~   96 (109)
                      +|+ |.|  +++++|  ..++.+..|++|++++ .+..+|.
T Consensus        93 L~l-s~N--~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A           93 LNL-SGN--KIKDLSTIEPLKKLENLKSLDLFNCEVTNLND  130 (149)
T ss_dssp             EEC-TTS--CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred             EEC-CCC--cCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence            555 444  455443  4445555555555554 4444443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.59  E-value=2.7e-05  Score=58.12  Aligned_cols=69  Identities=13%  Similarity=-0.075  Sum_probs=56.7

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eee--ccCchhhhhhhhh
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNI--TYPGLSMAIRKAQ  105 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~--~~P~~~g~l~K~~  105 (109)
                      -+|.|+++++.++|..+  ..+..-..+|+ +.|  +|+++|..++.+..|+.|++++ .+.  .+|+.++.+.+-+
T Consensus       194 ~~L~Ls~N~l~~l~~~~--~~l~~L~~L~L-~~N--~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~  265 (317)
T 3o53_A          194 KTLDLSSNKLAFMGPEF--QSAAGVTWISL-RNN--KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ  265 (317)
T ss_dssp             CEEECCSSCCCEECGGG--GGGTTCSEEEC-TTS--CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHH
T ss_pred             CEEECCCCcCCcchhhh--cccCcccEEEC-cCC--cccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccce
Confidence            57999999999999987  44665555999 999  9999999999999999999999 555  6777776665443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.59  E-value=8.5e-05  Score=55.52  Aligned_cols=59  Identities=20%  Similarity=0.185  Sum_probs=29.3

Q ss_pred             eeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeeccCc
Q psy18121         33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYPG   96 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P~   96 (109)
                      +|.|+++++.++|..+  ..+..-..+|+ +.|  +|+.+|+ .++.+..|+.|++++ .+..+|.
T Consensus        81 ~L~Ls~N~l~~l~~~~--~~l~~L~~L~l-~~N--~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~  141 (290)
T 1p9a_G           81 TLDLSHNQLQSLPLLG--QTLPALTVLDV-SFN--RLTSLPLGALRGLGELQELYLKGNELKTLPP  141 (290)
T ss_dssp             EEECCSSCCSSCCCCT--TTCTTCCEEEC-CSS--CCCCCCSSTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             EEECCCCcCCcCchhh--ccCCCCCEEEC-CCC--cCcccCHHHHcCCCCCCEEECCCCCCCccCh
Confidence            4555555555555544  22333223555 555  5555553 345555555555555 4444443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.59  E-value=7.9e-05  Score=54.24  Aligned_cols=61  Identities=18%  Similarity=0.215  Sum_probs=30.9

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccccc-ccccccceEEecc-eeeccCc
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSG-GKYDLSDSVIVVY-FNITYPG   96 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I-~~F~~LksL~~~~-~l~~~P~   96 (109)
                      ..|.|+++++.++|...- ..+..-..+|+ +.|  +++++|+.+ +.+..|+.|++++ .+..+|.
T Consensus        40 ~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l-~~n--~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~  102 (270)
T 2o6q_A           40 KKLDLQSNKLSSLPSKAF-HRLTKLRLLYL-NDN--KLQTLPAGIFKELKNLETLWVTDNKLQALPI  102 (270)
T ss_dssp             SEEECCSSCCSCCCTTSS-SSCTTCCEEEC-CSS--CCSCCCTTTTSSCTTCCEEECCSSCCCCCCT
T ss_pred             CEEECcCCCCCeeCHHHh-cCCCCCCEEEC-CCC--ccCeeChhhhcCCCCCCEEECCCCcCCcCCH
Confidence            345555555555554220 11332222666 555  566666543 5566666666665 5555553

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.58  E-value=6.9e-05  Score=57.21  Aligned_cols=56  Identities=14%  Similarity=0.087  Sum_probs=25.6

Q ss_pred             eeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccccc-c-cccccceEEecc-eeeccC
Q psy18121         33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSG-G-KYDLSDSVIVVY-FNITYP   95 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I-~-~F~~LksL~~~~-~l~~~P   95 (109)
                      ++.+++++|+++|..+..    ....+|| |.|  +|+++|+.+ . .+..|+.|++++ .+..+|
T Consensus        22 ~l~c~~~~l~~iP~~~~~----~l~~L~L-s~N--~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~   80 (361)
T 2xot_A           22 ILSCSKQQLPNVPQSLPS----YTALLDL-SHN--NLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS   80 (361)
T ss_dssp             EEECCSSCCSSCCSSCCT----TCSEEEC-CSS--CCCEECTTSSSSCCTTCCEEECCSSCCCEEC
T ss_pred             EEEeCCCCcCccCccCCC----CCCEEEC-CCC--CCCccChhhhhhcccccCEEECCCCcCCccC
Confidence            455566666666654311    1122555 444  455554432 2 444444444444 444433

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.57  E-value=7.1e-05  Score=55.73  Aligned_cols=65  Identities=12%  Similarity=0.098  Sum_probs=35.9

Q ss_pred             eeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeecc-Cchhhhhhhh
Q psy18121         33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITY-PGLSMAIRKA  104 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~-P~~~g~l~K~  104 (109)
                      ++.+++++++++|....    .....+|+ +.|  +++++|+ .++.+..|+.|++++ .+..+ |+.++.+.+-
T Consensus        37 ~l~~~~~~l~~ip~~~~----~~l~~L~l-~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  104 (332)
T 2ft3_A           37 VVQCSDLGLKAVPKEIS----PDTTLLDL-QNN--DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL  104 (332)
T ss_dssp             EEECCSSCCSSCCSCCC----TTCCEEEC-CSS--CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred             EEECCCCCccccCCCCC----CCCeEEEC-CCC--cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence            46666666776666541    12222666 555  6666644 466666666666665 44444 4455544443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.57  E-value=7.2e-05  Score=59.72  Aligned_cols=68  Identities=7%  Similarity=0.021  Sum_probs=51.6

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeecc-Cchhhhhhhhhh
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITY-PGLSMAIRKAQW  106 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~-P~~~g~l~K~~~  106 (109)
                      .++.+++++|+++|..+.    .....+|+ |.|  +++++|+ .++.+..|+.|++++ .+..+ |+.++.+++-+.
T Consensus        34 ~~l~ls~~~L~~ip~~~~----~~L~~L~L-s~N--~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  104 (562)
T 3a79_B           34 SMVDYSNRNLTHVPKDLP----PRTKALSL-SQN--SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY  104 (562)
T ss_dssp             CEEECTTSCCCSCCTTSC----TTCCEEEC-CSS--CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred             cEEEcCCCCCccCCCCCC----CCcCEEEC-CCC--CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence            689999999999998652    33334899 888  8888885 788888999999988 77766 666766655443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.57  E-value=6.6e-05  Score=66.31  Aligned_cols=71  Identities=13%  Similarity=0.169  Sum_probs=54.4

Q ss_pred             hceeEecCCCCCCCCCCCCCcccCC-------cEE-EeeecCccccccccccccc--cccccceEEecc-eeeccCchhh
Q psy18121         31 SGELNLSGRKLKDFPNSGGKYDLSD-------SVI-VVYFSRSGRKLKDFPNSGG--KYDLSDSVIVVY-FNITYPGLSM   99 (109)
Q Consensus        31 TGvL~Ls~rkLkeFP~~~~~~dLsd-------tlr-lDL~S~N~~rl~elP~~I~--~F~~LksL~~~~-~l~~~P~~~g   99 (109)
                      =-.|.|+++++.++|...  +....       .++ +|| |.|  +|+++|..++  .+..|+.|++++ .+..+|..++
T Consensus       699 L~~L~Ls~N~L~~ip~~~--~~~~~~~l~nl~~L~~L~L-s~N--~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~  773 (876)
T 4ecn_A          699 ISTIILSNNLMTSIPENS--LKPKDGNYKNTYLLTTIDL-RFN--KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL  773 (876)
T ss_dssp             CSEEECCSCCCSCCCTTS--SSCTTSCCTTGGGCCEEEC-CSS--CCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGG
T ss_pred             CCEEECCCCcCCccChHH--hccccccccccCCccEEEC-CCC--CCccchHHhhhccCCCcCEEEeCCCCCCccchhhh
Confidence            357888888888888876  22321       455 888 888  8889998887  888999999988 7888888888


Q ss_pred             hhhhhhh
Q psy18121        100 AIRKAQW  106 (109)
Q Consensus       100 ~l~K~~~  106 (109)
                      .+.+-+.
T Consensus       774 ~L~~L~~  780 (876)
T 4ecn_A          774 NSSQLKA  780 (876)
T ss_dssp             GCTTCCE
T ss_pred             cCCCCCE
Confidence            7765543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.57  E-value=2.7e-05  Score=62.56  Aligned_cols=67  Identities=10%  Similarity=-0.126  Sum_probs=49.1

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhhh
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRKA  104 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K~  104 (109)
                      -.|.|+++++..+|...   .++.-..+|| |.|  +|+.+|+.++.+..|+.|++++ .+..+|+.++.+.+-
T Consensus       172 ~~L~Ls~N~l~~~~~~~---~l~~L~~L~L-s~N--~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L  239 (487)
T 3oja_A          172 EHLNLQYNFIYDVKGQV---VFAKLKTLDL-SSN--KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL  239 (487)
T ss_dssp             CEEECTTSCCCEEECCC---CCTTCCEEEC-CSS--CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTC
T ss_pred             cEEecCCCccccccccc---cCCCCCEEEC-CCC--CCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCC
Confidence            46777777777776544   1333333888 888  8888888888888888888888 888888877655443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.53  E-value=9.3e-05  Score=57.92  Aligned_cols=65  Identities=12%  Similarity=-0.013  Sum_probs=33.2

Q ss_pred             hceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccc-cccccccccceEEecc-eeeccC-chhhhhh
Q psy18121         31 SGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFP-NSGGKYDLSDSVIVVY-FNITYP-GLSMAIR  102 (109)
Q Consensus        31 TGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP-~~I~~F~~LksL~~~~-~l~~~P-~~~g~l~  102 (109)
                      .|++.++++++.++|..+.    .....+|+ |.|  +++.+| ..++.+..|+.|++++ .+..+| +.++.+.
T Consensus         7 ~~~c~~~~~~l~~ip~~~~----~~L~~L~L-s~n--~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~   74 (549)
T 2z81_A            7 SGVCDGRSRSFTSIPSGLT----AAMKSLDL-SFN--KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG   74 (549)
T ss_dssp             TSEEECTTSCCSSCCSCCC----TTCCEEEC-CSS--CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             CceEECCCCccccccccCC----CCccEEEC-cCC--ccCccChhhhhcCCcccEEECCCCCcCccChhhccccc
Confidence            3556666666666666441    12222666 555  555553 3455555555555555 444443 3344433

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.52  E-value=5.4e-05  Score=56.35  Aligned_cols=41  Identities=7%  Similarity=-0.066  Sum_probs=20.0

Q ss_pred             EeeecCcccccccccc-ccccccccceEEecc-eeeccCchhhhhh
Q psy18121         59 VVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYPGLSMAIR  102 (109)
Q Consensus        59 lDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P~~~g~l~  102 (109)
                      +|+ +.|  +++.+|+ .++.+..|+.|++++ .+..+|+.++.+.
T Consensus       222 L~L-~~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~  264 (332)
T 2ft3_A          222 LGL-GHN--QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLK  264 (332)
T ss_dssp             CBC-CSS--CCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCT
T ss_pred             EEC-CCC--cCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCc
Confidence            455 444  4555544 344555555555554 4445555444433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.52  E-value=2e-05  Score=55.15  Aligned_cols=58  Identities=17%  Similarity=0.209  Sum_probs=27.9

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccC
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYP   95 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P   95 (109)
                      -+|.|+++++.++| .+  ..+..-..+|+ +.|  +++++|..++.+..|+.|++++ .+..+|
T Consensus        51 ~~L~ls~n~l~~l~-~~--~~l~~L~~L~l-~~n--~l~~l~~~~~~~~~L~~L~L~~N~l~~l~  109 (198)
T 1ds9_A           51 KHLALSTNNIEKIS-SL--SGMENLRILSL-GRN--LIKKIENLDAVADTLEELWISYNQIASLS  109 (198)
T ss_dssp             SEEECSEEEESCCC-CH--HHHTTCCEEEE-EEE--EECSCSSHHHHHHHCSEEEEEEEECCCHH
T ss_pred             CEEECCCCCCcccc-cc--ccCCCCCEEEC-CCC--CcccccchhhcCCcCCEEECcCCcCCcCC
Confidence            44555555555555 32  22322222555 444  5555555555555555555555 444444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.50  E-value=9.5e-05  Score=54.81  Aligned_cols=64  Identities=11%  Similarity=0.125  Sum_probs=51.2

Q ss_pred             hceeEecCCCCCCCCCC-CCCcccCCcEEEeeecCcccccccc-ccccccccccceEEecc-eeeccCchhh
Q psy18121         31 SGELNLSGRKLKDFPNS-GGKYDLSDSVIVVYFSRSGRKLKDF-PNSGGKYDLSDSVIVVY-FNITYPGLSM   99 (109)
Q Consensus        31 TGvL~Ls~rkLkeFP~~-~~~~dLsdtlrlDL~S~N~~rl~el-P~~I~~F~~LksL~~~~-~l~~~P~~~g   99 (109)
                      ..+|.|+++++.++|.. +.  .+..-..+|+ +.|  +++.+ |..++.+..|++|++++ .+..+|..+.
T Consensus        54 l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L-~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~  120 (330)
T 1xku_A           54 TALLDLQNNKITEIKDGDFK--NLKNLHTLIL-INN--KISKISPGAFAPLVKLERLYLSKNQLKELPEKMP  120 (330)
T ss_dssp             CCEEECCSSCCCCBCTTTTT--TCTTCCEEEC-CSS--CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC
T ss_pred             CeEEECCCCcCCEeChhhhc--cCCCCCEEEC-CCC--cCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc
Confidence            45799999999999984 42  3554444999 888  89998 67899999999999998 8888887654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=97.50  E-value=4.6e-05  Score=57.20  Aligned_cols=14  Identities=29%  Similarity=0.508  Sum_probs=6.8

Q ss_pred             eeEecCCCCCCCCC
Q psy18121         33 ELNLSGRKLKDFPN   46 (109)
Q Consensus        33 vL~Ls~rkLkeFP~   46 (109)
                      +|.|+++++.++|.
T Consensus        56 ~L~l~~n~i~~~~~   69 (353)
T 2z80_A           56 SLDLSNNRITYISN   69 (353)
T ss_dssp             EEECTTSCCCEECT
T ss_pred             EEECCCCcCcccCH
Confidence            44445555544444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.49  E-value=0.00011  Score=53.44  Aligned_cols=60  Identities=17%  Similarity=0.093  Sum_probs=29.5

Q ss_pred             eeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc-eeeccCc
Q psy18121         33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYPG   96 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P~   96 (109)
                      .|.|+++++.++|...- ..+..-..+|+ +.|  +++.+|+. +..+..|++|++++ .+..+|.
T Consensus       137 ~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L-~~n--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (270)
T 2o6q_A          137 YLSLGYNELQSLPKGVF-DKLTSLKELRL-YNN--QLKRVPEGAFDKLTELKTLKLDNNQLKRVPE  198 (270)
T ss_dssp             EEECCSSCCCCCCTTTT-TTCTTCCEEEC-CSS--CCSCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             EEECCCCcCCccCHhHc-cCCcccceeEe-cCC--cCcEeChhHhccCCCcCEEECCCCcCCcCCH
Confidence            45555555555554320 11222222555 555  56655553 45556666666655 5555554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=97.49  E-value=9.7e-05  Score=61.97  Aligned_cols=67  Identities=13%  Similarity=0.063  Sum_probs=45.6

Q ss_pred             eeEecCCCCC-CCCCCCCCcccCCcEEEeeecCcccccc-ccccccccccccceEEecc-eee-ccCchhhhhhhh
Q psy18121         33 ELNLSGRKLK-DFPNSGGKYDLSDSVIVVYFSRSGRKLK-DFPNSGGKYDLSDSVIVVY-FNI-TYPGLSMAIRKA  104 (109)
Q Consensus        33 vL~Ls~rkLk-eFP~~~~~~dLsdtlrlDL~S~N~~rl~-elP~~I~~F~~LksL~~~~-~l~-~~P~~~g~l~K~  104 (109)
                      .|.|+++++. ++|.++  ..+..-..+|| |.|  +|+ .+|..++.+..|++|++++ .+. .+|+.++.++.-
T Consensus       636 ~LdLs~N~l~g~ip~~l--~~l~~L~~L~L-s~N--~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L  706 (768)
T 3rgz_A          636 FLDMSYNMLSGYIPKEI--GSMPYLFILNL-GHN--DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML  706 (768)
T ss_dssp             EEECCSSCCBSCCCGGG--GGCTTCCEEEC-CSS--CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCC
T ss_pred             EEECcCCcccccCCHHH--hccccCCEEeC-cCC--ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCC
Confidence            5777777777 666666  33554444777 777  777 7777777777777777777 444 677777666543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.49  E-value=0.00011  Score=54.97  Aligned_cols=68  Identities=19%  Similarity=0.184  Sum_probs=39.9

Q ss_pred             eeEecCCCCC---CCCCCCCCcccCCcEEEeeecC-cccccc-ccccccccccccceEEecc-eee-ccCchhhhhhhhh
Q psy18121         33 ELNLSGRKLK---DFPNSGGKYDLSDSVIVVYFSR-SGRKLK-DFPNSGGKYDLSDSVIVVY-FNI-TYPGLSMAIRKAQ  105 (109)
Q Consensus        33 vL~Ls~rkLk---eFP~~~~~~dLsdtlrlDL~S~-N~~rl~-elP~~I~~F~~LksL~~~~-~l~-~~P~~~g~l~K~~  105 (109)
                      +|.|+++++.   ++|..+  ..+..-..+|+ +. |  .+. .+|..++++..|+.|++++ .+. .+|+.++.+++-+
T Consensus        54 ~L~L~~~~l~~~~~~~~~l--~~l~~L~~L~L-~~~n--~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           54 NLDLSGLNLPKPYPIPSSL--ANLPYLNFLYI-GGIN--NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             EEEEECCCCSSCEECCGGG--GGCTTCSEEEE-EEET--TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEECCCCCccCCcccChhH--hCCCCCCeeeC-CCCC--cccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            4667777776   466665  33444333666 52 4  454 5666666666666666666 443 5666665555443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.49  E-value=0.00013  Score=55.31  Aligned_cols=58  Identities=7%  Similarity=0.044  Sum_probs=44.9

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc-ee-eccCc
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FN-ITYPG   96 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l-~~~P~   96 (109)
                      .++..++++|.++|..+    ..++..+|| +.|  +|++||+. ++.+..|+.|++++ .+ ..+|.
T Consensus        12 ~~v~C~~~~Lt~iP~~l----~~~l~~L~L-s~N--~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~   72 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL----PRNAIELRF-VLT--KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA   72 (350)
T ss_dssp             TEEEEESTTCCSCCTTC----CTTCSEEEE-ESC--CCSEECTTSSTTCTTCCEEEEECCTTCCEECT
T ss_pred             CEEEecCCCCCccCcCc----CCCCCEEEc-cCC--cCCCcCHHHHcCCCCCCEEECcCCCCCCccCh
Confidence            45677889999999876    234556999 888  89999974 68899999999988 53 55664

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.47  E-value=0.00012  Score=53.43  Aligned_cols=59  Identities=20%  Similarity=0.223  Sum_probs=25.5

Q ss_pred             eeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc-eeeccC
Q psy18121         33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYP   95 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P   95 (109)
                      +|.|+++++.++|...- ..+..-..+|+ +.|  +++.+|+. ++.+..|+.|++++ .+..+|
T Consensus        89 ~L~L~~n~l~~~~~~~~-~~l~~L~~L~L-~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  149 (272)
T 3rfs_A           89 YLILTGNQLQSLPNGVF-DKLTNLKELVL-VEN--QLQSLPDGVFDKLTNLTYLNLAHNQLQSLP  149 (272)
T ss_dssp             EEECTTSCCCCCCTTTT-TTCTTCCEEEC-TTS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             EEECCCCccCccChhHh-cCCcCCCEEEC-CCC--cCCccCHHHhccCCCCCEEECCCCccCccC
Confidence            45555555555554320 01222112555 444  45554443 34444555555544 444443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.46  E-value=0.00011  Score=53.38  Aligned_cols=22  Identities=9%  Similarity=0.163  Sum_probs=8.9

Q ss_pred             cccccccc-cccccccceEEecc
Q psy18121         68 KLKDFPNS-GGKYDLSDSVIVVY   89 (109)
Q Consensus        68 rl~elP~~-I~~F~~LksL~~~~   89 (109)
                      +|+.+|+. ++.+..|+.|++++
T Consensus       164 ~l~~~~~~~~~~l~~L~~L~l~~  186 (285)
T 1ozn_A          164 RISSVPERAFRGLHSLDRLLLHQ  186 (285)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCS
T ss_pred             cccccCHHHhcCccccCEEECCC
Confidence            44444432 33444444444444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.46  E-value=6.7e-05  Score=56.20  Aligned_cols=64  Identities=13%  Similarity=0.049  Sum_probs=29.0

Q ss_pred             eeEecCCCCC-CCCCCCCCcccCCcEEEeeecCcccccc-ccccccccccccceEEecc-eee-ccCchhhhh
Q psy18121         33 ELNLSGRKLK-DFPNSGGKYDLSDSVIVVYFSRSGRKLK-DFPNSGGKYDLSDSVIVVY-FNI-TYPGLSMAI  101 (109)
Q Consensus        33 vL~Ls~rkLk-eFP~~~~~~dLsdtlrlDL~S~N~~rl~-elP~~I~~F~~LksL~~~~-~l~-~~P~~~g~l  101 (109)
                      .|.|+++++. .+|..+  ..+..-..+|+ +.|  +|+ .+|..++.+..|+.|++++ .+. .+|+.++.+
T Consensus       105 ~L~Ls~n~l~~~~p~~~--~~l~~L~~L~L-s~N--~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l  172 (313)
T 1ogq_A          105 YLYITHTNVSGAIPDFL--SQIKTLVTLDF-SYN--ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF  172 (313)
T ss_dssp             EEEEEEECCEEECCGGG--GGCTTCCEEEC-CSS--EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCC
T ss_pred             EEECcCCeeCCcCCHHH--hCCCCCCEEeC-CCC--ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhh
Confidence            4444444444 444443  22332222555 444  454 4444555555555555555 333 445444443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.46  E-value=1.2e-05  Score=56.33  Aligned_cols=62  Identities=8%  Similarity=0.001  Sum_probs=44.5

Q ss_pred             CCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhhhhhc
Q psy18121         40 KLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRKAQWL  107 (109)
Q Consensus        40 kLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K~~~~  107 (109)
                      .++++|..+  ..+..-..+|+ |.|  +++.+| .++.+..|+.|++++ .+..+|+.++.+.+-++|
T Consensus        36 ~l~~l~~~~--~~l~~L~~L~l-s~n--~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L   98 (198)
T 1ds9_A           36 PIEKMDATL--STLKACKHLAL-STN--NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEEL   98 (198)
T ss_dssp             TCCCCHHHH--HHTTTCSEEEC-SEE--EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEE
T ss_pred             cHhhhhHHH--hcCCCCCEEEC-CCC--CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEE
Confidence            444555454  33554445888 877  888888 888888999999988 888888887776665543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.46  E-value=0.0001  Score=57.62  Aligned_cols=69  Identities=16%  Similarity=0.151  Sum_probs=33.4

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeec--cCchhhhhhhh
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNIT--YPGLSMAIRKA  104 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~--~P~~~g~l~K~  104 (109)
                      -+|.|+++++.++|...- ..+..-..+|+ +.|  +++.+|. .++.+..|++|++++ .+..  +|+.++.+++-
T Consensus        79 ~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L-~~n--~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L  151 (570)
T 2z63_A           79 STLILTGNPIQSLALGAF-SGLSSLQKLVA-VET--NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL  151 (570)
T ss_dssp             CEEECTTCCCCEECTTTT-TTCTTCCEEEC-TTS--CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred             CEEeCcCCcCCccCHhhh-cCccccccccc-ccc--ccccCCCccccccccccEEecCCCccceecChhhhcccCCC
Confidence            345555555555553220 11222122555 555  5555554 355666666666665 3333  45555555443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.45  E-value=9.1e-05  Score=56.16  Aligned_cols=62  Identities=10%  Similarity=-0.008  Sum_probs=28.2

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc-eeeccCch
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYPGL   97 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P~~   97 (109)
                      -+|.|+++++.++|...- ..+..-..+|+ +.|  +++.+|+. ++.+..|+.|++++ .+..+|..
T Consensus        72 ~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L-~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~  135 (390)
T 3o6n_A           72 ELLNLNDLQIEEIDTYAF-AYAHTIQKLYM-GFN--AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG  135 (390)
T ss_dssp             SEEECTTSCCCEECTTTT-TTCTTCCEEEC-CSS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             cEEECCCCcccccChhhc-cCCCCcCEEEC-CCC--CCCcCCHHHhcCCCCCCEEECCCCccCcCCHH
Confidence            455555555555554220 11222122555 444  55555443 45555555555555 44445443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.45  E-value=0.00011  Score=60.54  Aligned_cols=72  Identities=13%  Similarity=-0.005  Sum_probs=52.7

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEec------c--eeeccCchhhhhhh
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVV------Y--FNITYPGLSMAIRK  103 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~------~--~l~~~P~~~g~l~K  103 (109)
                      -.|.|+++++.++|.......+..-..+|| |.|  +|+.+|..++.+..|+.|+++      +  ....+|+.++.+.+
T Consensus       491 ~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~L-s~N--~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~  567 (636)
T 4eco_A          491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDL-SYN--SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS  567 (636)
T ss_dssp             CEEECCSSCCCBCCGGGSTTTCTTCCEEEC-CSS--CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSS
T ss_pred             cEEECcCCcCCccChhhhhccCCCcCEEEC-CCC--CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCC
Confidence            468888999998888762114555445888 888  888888888888888888884      2  35678888777665


Q ss_pred             hhh
Q psy18121        104 AQW  106 (109)
Q Consensus       104 ~~~  106 (109)
                      -+.
T Consensus       568 L~~  570 (636)
T 4eco_A          568 LTQ  570 (636)
T ss_dssp             CCE
T ss_pred             CCE
Confidence            443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.44  E-value=0.00011  Score=54.51  Aligned_cols=62  Identities=16%  Similarity=0.044  Sum_probs=48.0

Q ss_pred             hhceeEecCCCCCCC-CCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecc-eeeccCc
Q psy18121         30 LSGELNLSGRKLKDF-PNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPG   96 (109)
Q Consensus        30 kTGvL~Ls~rkLkeF-P~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~   96 (109)
                      .=-+|.|+++++.++ |.....+.-...++ +|+ |.|  +|+++|..+.  ..|+.|++++ .+..+|.
T Consensus       225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~L-s~N--~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~  289 (310)
T 4glp_A          225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNL-SFA--GLEQVPKGLP--AKLRVLDLSSNRLNRAPQ  289 (310)
T ss_dssp             CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEEC-CSS--CCCSCCSCCC--SCCSCEECCSCCCCSCCC
T ss_pred             CCCEEECCCCCCCccchhhHHhccCcCcCCEEEC-CCC--CCCchhhhhc--CCCCEEECCCCcCCCCch
Confidence            336789999999998 77764322125666 999 888  8999999885  7999999999 8887776

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.44  E-value=9.5e-05  Score=56.44  Aligned_cols=61  Identities=13%  Similarity=0.046  Sum_probs=26.6

Q ss_pred             eeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccc-cccccccccceEEecc-eeeccCch
Q psy18121         33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFP-NSGGKYDLSDSVIVVY-FNITYPGL   97 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP-~~I~~F~~LksL~~~~-~l~~~P~~   97 (109)
                      .|.|++++|..+|...- ..+..-..+|| +.|  +|..++ ..++.+..|+.|++++ .+..+|..
T Consensus        92 ~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L-~~N--~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~  154 (361)
T 2xot_A           92 YLDLSSNHLHTLDEFLF-SDLQALEVLLL-YNN--HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE  154 (361)
T ss_dssp             EEECCSSCCCEECTTTT-TTCTTCCEEEC-CSS--CCCEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred             EEECCCCcCCcCCHHHh-CCCcCCCEEEC-CCC--cccEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence            44555555555544320 01222122555 444  455442 2344555555555555 45455443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.43  E-value=0.00013  Score=52.78  Aligned_cols=22  Identities=18%  Similarity=0.175  Sum_probs=9.2

Q ss_pred             ccccccc-ccccccccceEEecc
Q psy18121         68 KLKDFPN-SGGKYDLSDSVIVVY   89 (109)
Q Consensus        68 rl~elP~-~I~~F~~LksL~~~~   89 (109)
                      ++..+|+ .++.+..|++|++++
T Consensus       111 ~l~~~~~~~~~~l~~L~~L~l~~  133 (276)
T 2z62_A          111 NLASLENFPIGHLKTLKELNVAH  133 (276)
T ss_dssp             CCCCSTTCCCTTCTTCCEEECCS
T ss_pred             CccccCchhcccCCCCCEEECcC
Confidence            3333333 244444444444444

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.42  E-value=0.00016  Score=52.86  Aligned_cols=59  Identities=19%  Similarity=0.248  Sum_probs=25.2

Q ss_pred             eeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc-eeeccC
Q psy18121         33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYP   95 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P   95 (109)
                      +|.|+++++.++|...- ..+..-..+|+ +.|  +++.+|+. ++.+..|+.|++++ .+..+|
T Consensus       113 ~L~L~~n~l~~~~~~~~-~~l~~L~~L~L-~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  173 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVF-DKLTNLTYLNL-AHN--QLQSLPKGVFDKLTNLTELDLSYNQLQSLP  173 (272)
T ss_dssp             EEECTTSCCCCCCTTTT-TTCTTCCEEEC-CSS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             EEECCCCcCCccCHHHh-ccCCCCCEEEC-CCC--ccCccCHHHhccCccCCEEECCCCCcCccC
Confidence            45555555555554320 11222122555 444  45554443 24444555555544 344443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.42  E-value=0.00015  Score=57.69  Aligned_cols=64  Identities=9%  Similarity=-0.024  Sum_probs=33.3

Q ss_pred             eeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeecc-Cchhhhhhh
Q psy18121         33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITY-PGLSMAIRK  103 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~-P~~~g~l~K  103 (109)
                      .+..++++|+++|..+..    .+..+|+ |.|  +++.+|+ .++.+..|++|++++ .+..+ |+.++-+++
T Consensus        16 ~~~c~~~~l~~iP~~l~~----~l~~L~L-s~n--~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~   82 (606)
T 3t6q_A           16 TYNCENLGLNEIPGTLPN----STECLEF-SFN--VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHR   82 (606)
T ss_dssp             EEECTTSCCSSCCTTSCT----TCCEEEC-TTC--CCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTT
T ss_pred             eEECCCCCcccCcCCCCC----cCcEEEc-cCC--ccCcCChhHhccCccceEEECCCCccceeChhhccCccc
Confidence            455666666666654411    2222666 555  5666633 456666666666665 44333 444444443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.42  E-value=0.00011  Score=55.72  Aligned_cols=68  Identities=10%  Similarity=-0.028  Sum_probs=41.7

Q ss_pred             ceeEecCCCCCCCCC-CCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhhh
Q psy18121         32 GELNLSGRKLKDFPN-SGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRKA  104 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~-~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K~  104 (109)
                      -.|.|+++++.+++. .+.  .+..-..+|+ +.|  +++.+|..++.+..|+.|++++ .+..+|..++.+.+-
T Consensus       251 ~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L-~~n--~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L  320 (390)
T 3o6n_A          251 VEVDLSYNELEKIMYHPFV--KMQRLERLYI-SNN--RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRL  320 (390)
T ss_dssp             SEEECCSSCCCEEESGGGT--TCSSCCEEEC-CSS--CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTC
T ss_pred             cEEECCCCcCCCcChhHcc--ccccCCEEEC-CCC--cCcccCcccCCCCCCCEEECCCCcceecCccccccCcC
Confidence            356666666666633 332  2333233777 666  7777777777777777777777 666777666655443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.41  E-value=0.00014  Score=53.63  Aligned_cols=62  Identities=8%  Similarity=0.033  Sum_probs=46.3

Q ss_pred             hceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhh
Q psy18121         31 SGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSM   99 (109)
Q Consensus        31 TGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g   99 (109)
                      =-+|.|++++++++| .+  ..+..-..+|+ +.|  +++++|+ ++.+..|+.|++++ .+..+|+..+
T Consensus        43 L~~L~l~~n~i~~l~-~l--~~l~~L~~L~L-~~N--~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~  105 (263)
T 1xeu_A           43 VQNFNGDNSNIQSLA-GM--QFFTNLKELHL-SHN--QISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS  105 (263)
T ss_dssp             CSEEECTTSCCCCCT-TG--GGCTTCCEEEC-CSS--CCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC
T ss_pred             CcEEECcCCCcccch-HH--hhCCCCCEEEC-CCC--ccCCChh-hccCCCCCEEECCCCccCCcCcccc
Confidence            346888999999888 33  23444344888 888  8888888 88888888888888 7777776543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.41  E-value=0.00015  Score=52.69  Aligned_cols=67  Identities=10%  Similarity=0.023  Sum_probs=40.4

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc-eeeccCch-hhhhh
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYPGL-SMAIR  102 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P~~-~g~l~  102 (109)
                      -+|.|+++++.++|...- ..+..-..+|+ +.|  +++.+|+. ++.+..|+.|++++ .+..+|.. ++.+.
T Consensus       108 ~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l-~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  177 (285)
T 1ozn_A          108 HTLHLDRCGLQELGPGLF-RGLAALQYLYL-QDN--ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH  177 (285)
T ss_dssp             CEEECTTSCCCCCCTTTT-TTCTTCCEEEC-CSS--CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             CEEECCCCcCCEECHhHh-hCCcCCCEEEC-CCC--cccccCHhHhccCCCccEEECCCCcccccCHHHhcCcc
Confidence            456677777777654320 12333233777 766  77777764 67777777777777 66666653 44333

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.39  E-value=0.00012  Score=58.49  Aligned_cols=40  Identities=10%  Similarity=0.012  Sum_probs=17.8

Q ss_pred             EeeecCccccccccccccccccccceEEecc-eeeccC--chhhhhhh
Q psy18121         59 VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYP--GLSMAIRK  103 (109)
Q Consensus        59 lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P--~~~g~l~K  103 (109)
                      +|| |.|  +|+++|..  .+..|++|++++ .+..+|  +.++-+++
T Consensus       105 L~L-s~N--~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~  147 (562)
T 3a79_B          105 LDV-SHN--RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTK  147 (562)
T ss_dssp             EEC-TTS--CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTT
T ss_pred             EEC-CCC--cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCc
Confidence            444 444  44444444  444444444444 333332  44444443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.37  E-value=0.00018  Score=57.21  Aligned_cols=68  Identities=15%  Similarity=0.118  Sum_probs=38.3

Q ss_pred             ceeEecCCCCCCCCCC-CCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeecc-Cchhhhhhhh
Q psy18121         32 GELNLSGRKLKDFPNS-GGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITY-PGLSMAIRKA  104 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~-~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~-P~~~g~l~K~  104 (109)
                      -+|.|++++++++|.. +  ..+..-..+|+ |.|  +++.+|+ .++.+..|++|++++ .+..+ |+.++-+.+-
T Consensus        35 ~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L-s~n--~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  106 (606)
T 3vq2_A           35 KNIDLSFNPLKILKSYSF--SNFSELQWLDL-SRC--EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL  106 (606)
T ss_dssp             CEEECTTSCCCEECTTTT--TTCTTCCEEEC-TTC--CCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred             CEEECCCCCcCEeChhhc--cCCccCcEEeC-CCC--cccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccC
Confidence            4556666666666552 2  12333333666 666  6666643 466666777777766 55555 5666555443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.36  E-value=0.0002  Score=53.33  Aligned_cols=69  Identities=16%  Similarity=0.051  Sum_probs=49.7

Q ss_pred             hhceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhhhh
Q psy18121         30 LSGELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRKAQ  105 (109)
Q Consensus        30 kTGvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K~~  105 (109)
                      .=-+|.|+++++.+.+....-..+ ..++ +|+ |.|  +|+++|..+.  ..|+.|++++ .+..+|+ ++.+.+-+
T Consensus       229 ~L~~L~Ls~N~l~~~~~~~~~~~l-~~L~~L~L-s~N--~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~  299 (312)
T 1wwl_A          229 QLQGLDLSHNSLRDAAGAPSCDWP-SQLNSLNL-SFT--GLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVG  299 (312)
T ss_dssp             CCSEEECTTSCCCSSCCCSCCCCC-TTCCEEEC-TTS--CCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEE
T ss_pred             CCCEEECCCCcCCcccchhhhhhc-CCCCEEEC-CCC--ccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCC
Confidence            345788999999887632111123 3455 999 888  8999999887  8899999999 8888887 66555433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.35  E-value=0.00024  Score=52.81  Aligned_cols=49  Identities=20%  Similarity=0.171  Sum_probs=44.1

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecc
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY   89 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~   89 (109)
                      -+|.|+++++.++|..+.     ..++ +|+ |.|  +|+.+|. ++.+..|+.|++++
T Consensus       256 ~~L~Ls~N~l~~ip~~~~-----~~L~~L~L-s~N--~l~~~p~-~~~l~~L~~L~L~~  305 (312)
T 1wwl_A          256 NSLNLSFTGLKQVPKGLP-----AKLSVLDL-SYN--RLDRNPS-PDELPQVGNLSLKG  305 (312)
T ss_dssp             CEEECTTSCCSSCCSSCC-----SEEEEEEC-CSS--CCCSCCC-TTTSCEEEEEECTT
T ss_pred             CEEECCCCccChhhhhcc-----CCceEEEC-CCC--CCCCChh-HhhCCCCCEEeccC
Confidence            579999999999999872     5677 999 999  9999988 99999999999998

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.34  E-value=9.2e-05  Score=57.95  Aligned_cols=28  Identities=14%  Similarity=0.080  Sum_probs=14.6

Q ss_pred             EeeecCccccccccccc-cccccccceEEecc
Q psy18121         59 VVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY   89 (109)
Q Consensus        59 lDL~S~N~~rl~elP~~-I~~F~~LksL~~~~   89 (109)
                      +|+ |.|  +++.+|+. ++.+..|++|++++
T Consensus        79 L~L-s~n--~l~~~~~~~~~~l~~L~~L~Ls~  107 (549)
T 2z81_A           79 LDL-SDN--HLSSLSSSWFGPLSSLKYLNLMG  107 (549)
T ss_dssp             EEC-TTS--CCCSCCHHHHTTCTTCCEEECTT
T ss_pred             EEC-CCC--ccCccCHHHhccCCCCcEEECCC
Confidence            555 444  55555543 55555555555555

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.34  E-value=0.00025  Score=50.35  Aligned_cols=59  Identities=14%  Similarity=0.089  Sum_probs=43.9

Q ss_pred             eeEecCCCCCCCCCCCCCcccCCcEE-EeeecCcccc-ccccccc-cccc-cccceEEecc-eeeccCch
Q psy18121         33 ELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRK-LKDFPNS-GGKY-DLSDSVIVVY-FNITYPGL   97 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~r-l~elP~~-I~~F-~~LksL~~~~-~l~~~P~~   97 (109)
                      .|.|+++++.++|..+  +.. ..++ +|+ +.|  + ++.+|+. ++.+ ..|+.|++++ .+..+|..
T Consensus       160 ~L~l~~n~l~~i~~~~--~~~-~~L~~L~L-~~n--~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~  223 (239)
T 2xwt_C          160 TLKLYNNGFTSVQGYA--FNG-TKLDAVYL-NKN--KYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK  223 (239)
T ss_dssp             EEECCSCCCCEECTTT--TTT-CEEEEEEC-TTC--TTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred             EEEcCCCCCcccCHhh--cCC-CCCCEEEc-CCC--CCcccCCHHHhhccccCCcEEECCCCccccCChh
Confidence            6778888888888766  334 3566 888 777  6 8888764 5677 8888888888 77788765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.33  E-value=6.9e-05  Score=54.84  Aligned_cols=16  Identities=31%  Similarity=0.615  Sum_probs=10.2

Q ss_pred             ceeEecCCCCCCCCCC
Q psy18121         32 GELNLSGRKLKDFPNS   47 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~   47 (109)
                      -+|.|++++++++|..
T Consensus        31 ~~L~L~~n~l~~i~~~   46 (306)
T 2z66_A           31 TRLELESNKLQSLPHG   46 (306)
T ss_dssp             CEEECCSSCCCCCCTT
T ss_pred             CEEECCCCccCccCHh
Confidence            4566666666666654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.31  E-value=0.00021  Score=56.79  Aligned_cols=68  Identities=7%  Similarity=-0.026  Sum_probs=43.8

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeecc-Cchhhhhhh
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITY-PGLSMAIRK  103 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~-P~~~g~l~K  103 (109)
                      -.|.|+++++.++|...- ..+..-..+|+ +.|  +++++|..++.+..|+.|++++ .+..+ |..++.+.+
T Consensus       257 ~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l-~~n--~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  326 (606)
T 3t6q_A          257 ESINLQKHYFFNISSNTF-HCFSGLQELDL-TAT--HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS  326 (606)
T ss_dssp             EEEECTTCCCSSCCTTTT-TTCTTCSEEEC-TTS--CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTT
T ss_pred             eEEEeecCccCccCHHHh-ccccCCCEEec-cCC--ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCc
Confidence            357777888888777531 22443334888 777  7888888887888888888877 55544 444444433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.30  E-value=0.00014  Score=56.88  Aligned_cols=70  Identities=7%  Similarity=-0.123  Sum_probs=43.1

Q ss_pred             hhceeEecCCCCCCCC-CCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeec--cCchhhhhhhhh
Q psy18121         30 LSGELNLSGRKLKDFP-NSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNIT--YPGLSMAIRKAQ  105 (109)
Q Consensus        30 kTGvL~Ls~rkLkeFP-~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~--~P~~~g~l~K~~  105 (109)
                      .=-+|.|+++++.+++ ..+.  .+..-..+|| |.|  +|+++|..  .+..|++|++++ .+..  +|+.++.+++-+
T Consensus        46 ~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L-s~N--~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~  118 (520)
T 2z7x_B           46 KLRILIISHNRIQYLDISVFK--FNQELEYLDL-SHN--KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLK  118 (520)
T ss_dssp             TCCEEECCSSCCCEEEGGGGT--TCTTCCEEEC-CSS--CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCC
T ss_pred             cccEEecCCCccCCcChHHhh--cccCCCEEec-CCC--ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcce
Confidence            3356777777777763 3442  2433233777 777  77777776  677777777777 5543  567777666544


Q ss_pred             h
Q psy18121        106 W  106 (109)
Q Consensus       106 ~  106 (109)
                      .
T Consensus       119 ~  119 (520)
T 2z7x_B          119 F  119 (520)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.30  E-value=0.00024  Score=52.37  Aligned_cols=61  Identities=11%  Similarity=0.065  Sum_probs=34.9

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecc-eeeccCchhhhhh
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIR  102 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~  102 (109)
                      -.|.|+++++.++|....     ..++ +|+ +.|  +++.+| .++.+..|+.|++++ .+..+| .++.+.
T Consensus        88 ~~L~L~~N~l~~l~~~~~-----~~L~~L~L-~~N--~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~  150 (263)
T 1xeu_A           88 EELSVNRNRLKNLNGIPS-----ACLSRLFL-DNN--ELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLS  150 (263)
T ss_dssp             CEEECCSSCCSCCTTCCC-----SSCCEEEC-CSS--CCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCT
T ss_pred             CEEECCCCccCCcCcccc-----CcccEEEc-cCC--ccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCC
Confidence            356666666666665331     3344 666 656  666665 366666777777766 666555 344333

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.29  E-value=0.0002  Score=51.75  Aligned_cols=58  Identities=12%  Similarity=0.087  Sum_probs=29.2

Q ss_pred             eeEecCCCCCCCCCC-CCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeeccC
Q psy18121         33 ELNLSGRKLKDFPNS-GGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYP   95 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~-~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P   95 (109)
                      +|.|+++++.++|.. +.  .+..-..+|+ +.|  ++.++|+ .++.+..|++|++++ .+..+|
T Consensus        32 ~L~ls~n~l~~~~~~~~~--~l~~L~~L~l-~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~   92 (276)
T 2z62_A           32 NLDLSFNPLRHLGSYSFF--SFPELQVLDL-SRC--EIQTIEDGAYQSLSHLSTLILTGNPIQSLA   92 (276)
T ss_dssp             EEECTTCCCCEECTTTTT--TCTTCSEEEC-TTC--CCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred             EEECCCCcccccCHhHhc--cccCCcEEEC-CCC--cCCccCHHHccCCcCCCEEECCCCccCccC
Confidence            455566666555552 21  2332222555 555  5555554 355555555555555 444443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.29  E-value=0.00019  Score=60.38  Aligned_cols=40  Identities=8%  Similarity=-0.049  Sum_probs=20.7

Q ss_pred             EeeecCccccccccccccccccccceEEecc-ee-eccCchhhhh
Q psy18121         59 VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FN-ITYPGLSMAI  101 (109)
Q Consensus        59 lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l-~~~P~~~g~l  101 (109)
                      +|| +.|  +|+.+|..++++..|+.|++++ .+ ..+|+.++.+
T Consensus       212 L~L-s~N--~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          212 FRC-REN--RITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             EEC-CSS--CCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             Eec-CCC--cceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            555 555  5555555555555555555555 22 3344444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=97.28  E-value=0.00014  Score=55.51  Aligned_cols=35  Identities=9%  Similarity=-0.066  Sum_probs=16.9

Q ss_pred             EeeecCcccccccc-ccccccccccceEEecc-eeeccCc
Q psy18121         59 VVYFSRSGRKLKDF-PNSGGKYDLSDSVIVVY-FNITYPG   96 (109)
Q Consensus        59 lDL~S~N~~rl~el-P~~I~~F~~LksL~~~~-~l~~~P~   96 (109)
                      +|+ |.|  +++.+ |..++.+..|+.|++++ .+..+|.
T Consensus       352 L~L-s~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  388 (455)
T 3v47_A          352 LDL-SYN--HIRALGDQSFLGLPNLKELALDTNQLKSVPD  388 (455)
T ss_dssp             EEC-CSS--CCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             EEC-CCC--cccccChhhccccccccEEECCCCccccCCH
Confidence            455 444  45444 23445555555555555 4444444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.26  E-value=0.0004  Score=55.17  Aligned_cols=67  Identities=21%  Similarity=0.237  Sum_probs=32.9

Q ss_pred             ceeEecCCCCCCC-CCCCCCcccCCcEEEeeecCccccccccc-cccccccccceEEecc-eee--ccCchhhhhhh
Q psy18121         32 GELNLSGRKLKDF-PNSGGKYDLSDSVIVVYFSRSGRKLKDFP-NSGGKYDLSDSVIVVY-FNI--TYPGLSMAIRK  103 (109)
Q Consensus        32 GvL~Ls~rkLkeF-P~~~~~~dLsdtlrlDL~S~N~~rl~elP-~~I~~F~~LksL~~~~-~l~--~~P~~~g~l~K  103 (109)
                      -+|.|+++++.++ |..+.  .+..-..+|+ +.|  ++..+| ..++++..|++|++++ .+.  .+|+.++.+++
T Consensus        83 ~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~L-~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~  154 (606)
T 3vq2_A           83 SNLILTGNPIQSFSPGSFS--GLTSLENLVA-VET--KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN  154 (606)
T ss_dssp             CEEECTTCCCCCCCTTSST--TCTTCCEEEC-TTS--CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTT
T ss_pred             CEeECCCCcccccChhhcC--CcccCCEEEc-cCC--ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCC
Confidence            3555666666655 33332  2332222555 555  555555 3455555555555555 333  24555555444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.25  E-value=0.00024  Score=51.97  Aligned_cols=55  Identities=15%  Similarity=0.105  Sum_probs=44.6

Q ss_pred             eeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc-eeecc
Q psy18121         33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITY   94 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~   94 (109)
                      .+..++++|+++|....    ....++|+ +.|  +++++|.. ++++..|+.|++++ .+..+
T Consensus        11 ~l~c~~~~l~~ip~~~~----~~l~~L~L-~~n--~l~~i~~~~~~~l~~L~~L~L~~n~l~~~   67 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGIP----SSATRLEL-ESN--KLQSLPHGVFDKLTQLTKLSLSSNGLSFK   67 (306)
T ss_dssp             EEECCSSCCSSCCSCCC----TTCCEEEC-CSS--CCCCCCTTTTTTCTTCSEEECCSSCCCEE
T ss_pred             EEEcCCCCcccCCCCCC----CCCCEEEC-CCC--ccCccCHhHhhccccCCEEECCCCccCcc
Confidence            57889999999998762    33444999 888  99999997 58999999999998 55544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.24  E-value=0.00012  Score=58.72  Aligned_cols=68  Identities=12%  Similarity=-0.089  Sum_probs=55.8

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eee--ccCchhhhhhhh
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNI--TYPGLSMAIRKA  104 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~--~~P~~~g~l~K~  104 (109)
                      -.|.|+++++..+|..+  ..+..-..+|+ |.|  +|+.+|..++.+..|+.|++++ .+.  .+|+.++.+.+-
T Consensus       194 ~~L~Ls~N~l~~~~~~~--~~l~~L~~L~L-s~N--~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L  264 (487)
T 3oja_A          194 KTLDLSSNKLAFMGPEF--QSAAGVTWISL-RNN--KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV  264 (487)
T ss_dssp             CEEECCSSCCCEECGGG--GGGTTCSEEEC-TTS--CCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHH
T ss_pred             CEEECCCCCCCCCCHhH--cCCCCccEEEe-cCC--cCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCC
Confidence            47999999999999987  44655455999 998  9999999999999999999999 555  677766665543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.24  E-value=0.00039  Score=48.44  Aligned_cols=67  Identities=3%  Similarity=-0.102  Sum_probs=41.8

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeec-cCchhhhhhhhh
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNIT-YPGLSMAIRKAQ  105 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~-~P~~~g~l~K~~  105 (109)
                      -.|.|+++++.++| .+  ..+..-..+|+ +.|  +++.+| .++.+..|+.|++++ .+.. .|+.++.+.+-+
T Consensus        47 ~~L~l~~n~i~~l~-~l--~~l~~L~~L~l-~~n--~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           47 TYITLANINVTDLT-GI--EYAHNIKDLTI-NNI--HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             CEEEEESSCCSCCT-TG--GGCTTCSEEEE-ESC--CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             cEEeccCCCccChH-HH--hcCCCCCEEEc-cCC--CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            47888899998888 44  23443333777 666  666655 566677777777777 4433 455555554433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.23  E-value=0.00017  Score=51.26  Aligned_cols=52  Identities=15%  Similarity=0.132  Sum_probs=24.3

Q ss_pred             eeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccc-cccccc-ccccccccceEEec
Q psy18121         33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRK-LKDFPN-SGGKYDLSDSVIVV   88 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~r-l~elP~-~I~~F~~LksL~~~   88 (109)
                      .|.|++++++++|...- ..+..-..+|+ +.|  + ++.+|+ .++.+..|++|+++
T Consensus        35 ~L~l~~n~l~~i~~~~~-~~l~~L~~L~l-~~n--~~l~~i~~~~f~~l~~L~~L~l~   88 (239)
T 2xwt_C           35 TLKLIETHLRTIPSHAF-SNLPNISRIYV-SID--VTLQQLESHSFYNLSKVTHIEIR   88 (239)
T ss_dssp             EEEEESCCCSEECTTTT-TTCTTCCEEEE-ECC--SSCCEECTTTEESCTTCCEEEEE
T ss_pred             EEEEeCCcceEECHHHc-cCCCCCcEEeC-CCC--CCcceeCHhHcCCCcCCcEEECC
Confidence            55555555555555220 11332222555 444  4 555554 34455555555554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.23  E-value=0.00032  Score=54.37  Aligned_cols=60  Identities=8%  Similarity=-0.023  Sum_probs=31.2

Q ss_pred             ceeEecCCCCCCCCCC-CCCcccCCcEEEeeecCcccccccc-ccccccccccceEEecc-eeeccCc
Q psy18121         32 GELNLSGRKLKDFPNS-GGKYDLSDSVIVVYFSRSGRKLKDF-PNSGGKYDLSDSVIVVY-FNITYPG   96 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~-~~~~dLsdtlrlDL~S~N~~rl~el-P~~I~~F~~LksL~~~~-~l~~~P~   96 (109)
                      -+|.|++++++++|.. +.  .+..-..+|| +.|  +++.+ |..++.+..|+.|++++ .+..+|.
T Consensus        35 ~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L-~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   97 (477)
T 2id5_A           35 RLLDLGKNRIKTLNQDEFA--SFPHLEELEL-NEN--IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL   97 (477)
T ss_dssp             SEEECCSSCCCEECTTTTT--TCTTCCEEEC-TTS--CCCEECTTTTTTCTTCCEEECCSSCCCSCCT
T ss_pred             cEEECCCCccceECHhHcc--CCCCCCEEEC-CCC--ccCEeChhhhhCCccCCEEECCCCcCCccCc
Confidence            3555555555555432 21  1322222666 555  56655 34556666666666666 5555554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.20  E-value=0.00027  Score=53.54  Aligned_cols=62  Identities=16%  Similarity=0.094  Sum_probs=48.6

Q ss_pred             hceeEecCCCCCCCCCCCCCcccCCcEEEeeecC-ccccccccccc-cccccccceEEecc-eeeccCch
Q psy18121         31 SGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSR-SGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYPGL   97 (109)
Q Consensus        31 TGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~-N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P~~   97 (109)
                      .-+|.|++++++++|..+  +....-.++|+ +. |  +++++|++ +..+..|+.|++++ .+.++|..
T Consensus       156 l~~L~L~~N~i~~i~~~~--f~~~~L~~l~l-~~~n--~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~  220 (350)
T 4ay9_X          156 SVILWLNKNGIQEIHNSA--FNGTQLDELNL-SDNN--NLEELPNDVFHGASGPVILDISRTRIHSLPSY  220 (350)
T ss_dssp             CEEEECCSSCCCEECTTS--STTEEEEEEEC-TTCT--TCCCCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred             hhhhccccccccCCChhh--ccccchhHHhh-ccCC--cccCCCHHHhccCcccchhhcCCCCcCccChh
Confidence            456889999999999887  44554445888 54 5  89999986 48889999999998 88888864

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.20  E-value=0.00024  Score=57.77  Aligned_cols=69  Identities=10%  Similarity=-0.019  Sum_probs=45.1

Q ss_pred             ceeEecCCCCCCCCC-CCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhhhh
Q psy18121         32 GELNLSGRKLKDFPN-SGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRKAQ  105 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~-~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K~~  105 (109)
                      -.|.|+++++..++. .+.  .+..-..+|| |.|  +++.+|..++.+..|+.|++++ .+..+|..++.+.+-+
T Consensus       257 ~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L-s~N--~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~  327 (597)
T 3oja_B          257 VEVDLSYNELEKIMYHPFV--KMQRLERLYI-SNN--RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE  327 (597)
T ss_dssp             SEEECCSSCCCEEESGGGT--TCSSCCEEEC-TTS--CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCS
T ss_pred             CEEECCCCccCCCCHHHhc--CccCCCEEEC-CCC--CCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCC
Confidence            456777777776643 332  2433333777 777  7777777777777788888777 7777777766665443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.20  E-value=0.00024  Score=57.70  Aligned_cols=61  Identities=10%  Similarity=0.036  Sum_probs=27.8

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccc-cccccccceEEecc-eeeccCch
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYPGL   97 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P~~   97 (109)
                      -+|.|+++++.++|...- ..+. .++ +|| +.|  +|+.+|+. ++.+..|++|++++ .+..+|..
T Consensus        78 ~~L~L~~n~l~~~~~~~~-~~l~-~L~~L~L-~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~  141 (597)
T 3oja_B           78 ELLNLNDLQIEEIDTYAF-AYAH-TIQKLYM-GFN--AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG  141 (597)
T ss_dssp             SEEECTTSCCCEECTTTT-TTCT-TCCEEEC-CSS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             cEEECCCCCCCCCChHHh-cCCC-CCCEEEC-CCC--cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHH
Confidence            345555555555554220 1122 222 555 444  45555443 34555555555555 44444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=97.19  E-value=0.00039  Score=52.07  Aligned_cols=57  Identities=7%  Similarity=-0.038  Sum_probs=39.4

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccC
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYP   95 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P   95 (109)
                      -.|.+++++++++|. +  ..+..-..+|+ |.|  +++++|+ ++.+..|+.|++++ .+..+|
T Consensus        44 ~~L~l~~~~i~~l~~-~--~~l~~L~~L~L-~~n--~i~~~~~-~~~l~~L~~L~L~~n~l~~~~  101 (308)
T 1h6u_A           44 TTLSAFGTGVTTIEG-V--QYLNNLIGLEL-KDN--QITDLAP-LKNLTKITELELSGNPLKNVS  101 (308)
T ss_dssp             CEEECTTSCCCCCTT-G--GGCTTCCEEEC-CSS--CCCCCGG-GTTCCSCCEEECCSCCCSCCG
T ss_pred             CEEEeeCCCccCchh-h--hccCCCCEEEc-cCC--cCCCChh-HccCCCCCEEEccCCcCCCch
Confidence            367788888888873 3  23444334888 777  7888887 77777888888877 655554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.16  E-value=0.00043  Score=51.56  Aligned_cols=64  Identities=9%  Similarity=0.023  Sum_probs=41.4

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhh
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRK  103 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K  103 (109)
                      -.|.+++++++++|. +  ..+..-..+|+ +.|  +++.+|+ ++.+..|+.|++++ .+..+|+ ++.+++
T Consensus        49 ~~L~l~~~~i~~~~~-~--~~l~~L~~L~L-~~n--~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~  113 (291)
T 1h6t_A           49 DQIIANNSDIKSVQG-I--QYLPNVTKLFL-NGN--KLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKK  113 (291)
T ss_dssp             CEEECTTSCCCCCTT-G--GGCTTCCEEEC-CSS--CCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTT
T ss_pred             cEEEccCCCcccChh-H--hcCCCCCEEEc-cCC--ccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCC
Confidence            457778888888764 3  22444334777 777  7777777 77777777777777 6555554 444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.14  E-value=0.0003  Score=54.78  Aligned_cols=13  Identities=23%  Similarity=0.261  Sum_probs=6.2

Q ss_pred             eeEecCCCCCCCC
Q psy18121         33 ELNLSGRKLKDFP   45 (109)
Q Consensus        33 vL~Ls~rkLkeFP   45 (109)
                      .|.|+++++.++|
T Consensus        79 ~L~L~~n~i~~~~   91 (452)
T 3zyi_A           79 YLNLMENNIQMIQ   91 (452)
T ss_dssp             EEECCSSCCCEEC
T ss_pred             EEECcCCcCceEC
Confidence            4444444444443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.14  E-value=0.00051  Score=55.49  Aligned_cols=50  Identities=18%  Similarity=0.274  Sum_probs=26.2

Q ss_pred             eeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc
Q psy18121         33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY   89 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~   89 (109)
                      ++..++++|.++|..+.    .....+|+ |.|  .++.+|+ .++++..|++|++++
T Consensus         8 ~~~cs~~~L~~ip~~~~----~~l~~L~L-s~n--~l~~~~~~~~~~l~~L~~L~Ls~   58 (680)
T 1ziw_A            8 VADCSHLKLTQVPDDLP----TNITVLNL-THN--QLRRLPAANFTRYSQLTSLDVGF   58 (680)
T ss_dssp             EEECCSSCCSSCCSCSC----TTCSEEEC-CSS--CCCCCCGGGGGGGTTCSEEECCS
T ss_pred             eeECCCCCccccccccC----CCCcEEEC-CCC--CCCCcCHHHHhCCCcCcEEECCC
Confidence            45566666666665431    12222566 555  5555555 355555555555555

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=97.13  E-value=0.00048  Score=57.78  Aligned_cols=67  Identities=15%  Similarity=0.123  Sum_probs=32.1

Q ss_pred             eeEecCCCCC-CCCCCCCCcccCCcEEEeeecCcccccc-ccccccccccccceEEecc-eee-ccCchhhhhhhh
Q psy18121         33 ELNLSGRKLK-DFPNSGGKYDLSDSVIVVYFSRSGRKLK-DFPNSGGKYDLSDSVIVVY-FNI-TYPGLSMAIRKA  104 (109)
Q Consensus        33 vL~Ls~rkLk-eFP~~~~~~dLsdtlrlDL~S~N~~rl~-elP~~I~~F~~LksL~~~~-~l~-~~P~~~g~l~K~  104 (109)
                      +|.|+++++. .+|..+  ..+..-..+|+ +.|  ++. .+|.+++.+..|+.|++++ .+. .+|+.++.+++-
T Consensus       470 ~L~L~~N~l~~~~p~~l--~~l~~L~~L~L-~~N--~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  540 (768)
T 3rgz_A          470 TLILDFNDLTGEIPSGL--SNCTNLNWISL-SNN--RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL  540 (768)
T ss_dssp             EEECCSSCCCSCCCGGG--GGCTTCCEEEC-CSS--CCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC
T ss_pred             EEEecCCcccCcCCHHH--hcCCCCCEEEc-cCC--ccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC
Confidence            3445555554 334333  22332222555 555  555 4555555555555555555 222 455555554443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.12  E-value=0.0003  Score=54.52  Aligned_cols=64  Identities=6%  Similarity=0.126  Sum_probs=31.7

Q ss_pred             eeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeecc-Cchhhhhhh
Q psy18121         33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITY-PGLSMAIRK  103 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~-P~~~g~l~K  103 (109)
                      .+..++++|.++|..+.    .....+|| +.|  +++.+|+ .++.+..|+.|++++ .+..+ |+.++.+.+
T Consensus        15 ~v~c~~~~l~~ip~~~~----~~l~~L~L-~~n--~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~   81 (477)
T 2id5_A           15 AVLCHRKRFVAVPEGIP----TETRLLDL-GKN--RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN   81 (477)
T ss_dssp             EEECCSCCCSSCCSCCC----TTCSEEEC-CSS--CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             EEEeCCCCcCcCCCCCC----CCCcEEEC-CCC--ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCcc
Confidence            34555555666555431    12222555 555  5555543 455556666666655 44444 444444433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.12  E-value=0.0003  Score=59.14  Aligned_cols=63  Identities=13%  Similarity=0.008  Sum_probs=49.4

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCcccccccccccccccccc-------ceEEecc-eeeccCchhhhhh
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLS-------DSVIVVY-FNITYPGLSMAIR  102 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~L-------ksL~~~~-~l~~~P~~~g~l~  102 (109)
                      -+|.|++++|..+|. +.     ..++ +|| |.|  +|+.+|. ++.  .|       +.|++++ .+..+|+.++.+.
T Consensus       163 ~~L~Ls~N~L~~lp~-l~-----~~L~~L~L-s~N--~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~  230 (571)
T 3cvr_A          163 EVLSVRNNQLTFLPE-LP-----ESLEALDV-STN--LLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLD  230 (571)
T ss_dssp             CEEECCSSCCSCCCC-CC-----TTCCEEEC-CSS--CCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSC
T ss_pred             CEEECCCCCCCCcch-hh-----CCCCEEEC-cCC--CCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCC
Confidence            468888888888887 42     4566 999 999  9999999 776  78       9999999 9999999888776


Q ss_pred             hhhh
Q psy18121        103 KAQW  106 (109)
Q Consensus       103 K~~~  106 (109)
                      +-+.
T Consensus       231 ~L~~  234 (571)
T 3cvr_A          231 PTCT  234 (571)
T ss_dssp             TTEE
T ss_pred             CCCE
Confidence            6543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.12  E-value=0.00026  Score=54.96  Aligned_cols=15  Identities=20%  Similarity=0.169  Sum_probs=8.0

Q ss_pred             ceeEecCCCCCCCCC
Q psy18121         32 GELNLSGRKLKDFPN   46 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~   46 (109)
                      -+|.|++++++.+|.
T Consensus        67 ~~L~L~~n~i~~~~~   81 (440)
T 3zyj_A           67 RLLNLHENQIQIIKV   81 (440)
T ss_dssp             SEEECCSCCCCEECT
T ss_pred             cEEEccCCcCCeeCH
Confidence            345555555555553

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.10  E-value=0.00033  Score=54.77  Aligned_cols=59  Identities=12%  Similarity=0.137  Sum_probs=28.4

Q ss_pred             ceeEecCCCCCCCCCC-CCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeeccC
Q psy18121         32 GELNLSGRKLKDFPNS-GGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYP   95 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~-~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P   95 (109)
                      -.|.|+++++..+|.. +  ..+..-..+|+ |.|  ++..+|+ .++.+..|+.|++++ .+..+|
T Consensus        31 ~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L-s~n--~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~   92 (570)
T 2z63_A           31 KNLDLSFNPLRHLGSYSF--FSFPELQVLDL-SRC--EIQTIEDGAYQSLSHLSTLILTGNPIQSLA   92 (570)
T ss_dssp             CEEECCSCCCCEECTTTT--TTCSSCCEEEC-TTC--CCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred             cEEEccCCccCccChhHh--hCCCCceEEEC-CCC--cCCccCcccccCchhCCEEeCcCCcCCccC
Confidence            3455556555555542 2  12332222555 555  5555543 345555555555555 444443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.08  E-value=0.00025  Score=62.60  Aligned_cols=68  Identities=13%  Similarity=0.080  Sum_probs=43.9

Q ss_pred             hhceeEecCCCCCCCCC--CCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhh
Q psy18121         30 LSGELNLSGRKLKDFPN--SGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRK  103 (109)
Q Consensus        30 kTGvL~Ls~rkLkeFP~--~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K  103 (109)
                      .=-.|.|+++++.++|.  .+.  .+..-..+|| |.|  +|+.+| .++.+..|+.|++++ .+..+|+.++.+.+
T Consensus       549 ~L~~L~Ls~N~L~~ip~~~~l~--~L~~L~~L~L-s~N--~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~  619 (876)
T 4ecn_A          549 KIQIFYMGYNNLEEFPASASLQ--KMVKLGLLDC-VHN--KVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTD  619 (876)
T ss_dssp             TCCEEECCSSCCCBCCCHHHHT--TCTTCCEEEC-TTS--CCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECT
T ss_pred             CccEEEeeCCcCCccCChhhhh--cCCCCCEEEC-CCC--Ccccch-hhcCCCcceEEECcCCccccchHHHhhccc
Confidence            34577888888888887  552  2443333777 666  677777 666777777777776 66666666655544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=97.08  E-value=0.00033  Score=53.53  Aligned_cols=41  Identities=10%  Similarity=0.015  Sum_probs=20.0

Q ss_pred             EeeecCcccccccccc-ccccccccceEEecc-eeecc-Cchhhhhh
Q psy18121         59 VVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITY-PGLSMAIR  102 (109)
Q Consensus        59 lDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~-P~~~g~l~  102 (109)
                      +|+ |.|  ++.++|+ .++.+..|+.|++++ .+..+ |+.++.+.
T Consensus       328 L~L-s~N--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  371 (455)
T 3v47_A          328 LNL-SQN--FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP  371 (455)
T ss_dssp             EEC-CSS--CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             EEC-CCC--ccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence            555 555  5555532 345555555555555 44443 44444433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.04  E-value=0.00063  Score=52.96  Aligned_cols=65  Identities=8%  Similarity=0.019  Sum_probs=45.6

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeeccC-chhhhhhh
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYP-GLSMAIRK  103 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P-~~~g~l~K  103 (109)
                      +.+..++++|.++|..+.    .....+|| +.|  +|+.+|+ .++.+..|+.|++++ .+..+| +.++-+.+
T Consensus        57 ~~v~c~~~~l~~iP~~~~----~~l~~L~L-~~n--~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  124 (452)
T 3zyi_A           57 SKVVCTRRGLSEVPQGIP----SNTRYLNL-MEN--NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS  124 (452)
T ss_dssp             CEEECCSSCCSSCCSCCC----TTCSEEEC-CSS--CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             cEEEECCCCcCccCCCCC----CCccEEEC-cCC--cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCccc
Confidence            578899999999998652    23334888 777  7888754 577888888888887 555554 44444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=97.04  E-value=0.00053  Score=51.33  Aligned_cols=57  Identities=12%  Similarity=0.055  Sum_probs=30.1

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccC
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYP   95 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P   95 (109)
                      -+|.|+++++.++|. +  ..+..-..+|+ +.|  +++.+| .++.+..|++|++++ .+..+|
T Consensus        66 ~~L~L~~n~i~~~~~-~--~~l~~L~~L~L-~~n--~l~~~~-~~~~l~~L~~L~l~~n~l~~~~  123 (308)
T 1h6u_A           66 IGLELKDNQITDLAP-L--KNLTKITELEL-SGN--PLKNVS-AIAGLQSIKTLDLTSTQITDVT  123 (308)
T ss_dssp             CEEECCSSCCCCCGG-G--TTCCSCCEEEC-CSC--CCSCCG-GGTTCTTCCEEECTTSCCCCCG
T ss_pred             CEEEccCCcCCCChh-H--ccCCCCCEEEc-cCC--cCCCch-hhcCCCCCCEEECCCCCCCCch
Confidence            456666666666665 3  22332222566 555  555554 355555555555555 444444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.02  E-value=0.00052  Score=54.71  Aligned_cols=40  Identities=15%  Similarity=0.066  Sum_probs=29.5

Q ss_pred             cEE-EeeecCccccccccccccccccccceEEecc-eeeccCchhh
Q psy18121         56 SVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSM   99 (109)
Q Consensus        56 tlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g   99 (109)
                      .++ +|+ +.|  +++.+| +++.+..|+.|++++ .+..+|+.+.
T Consensus       132 ~L~~L~L-~~n--~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~~  173 (454)
T 1jl5_A          132 LLEYLGV-SNN--QLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLPP  173 (454)
T ss_dssp             TCCEEEC-CSS--CCSSCC-CCTTCTTCCEEECCSSCCSCCCCCCT
T ss_pred             CCCEEEC-cCC--CCCCCc-ccCCCCCCCEEECCCCcCcccCCCcc
Confidence            455 777 777  788887 578888888888887 7777776654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=96.97  E-value=0.00064  Score=57.49  Aligned_cols=39  Identities=15%  Similarity=0.064  Sum_probs=22.6

Q ss_pred             EeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhh
Q psy18121         59 VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRK  103 (109)
Q Consensus        59 lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K  103 (109)
                      +|+ |.|  +|+.+|.   .+..|+.|++++ .+..+|+.++.+.+
T Consensus       246 L~L-s~N--~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~  285 (622)
T 3g06_A          246 LMV-SGN--RLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSS  285 (622)
T ss_dssp             EEC-CSS--CCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCT
T ss_pred             EEC-CCC--CCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccc
Confidence            555 555  5666655   445566666666 55566665555443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.95  E-value=0.0011  Score=45.58  Aligned_cols=51  Identities=14%  Similarity=0.133  Sum_probs=42.0

Q ss_pred             ceeEecCCCCC--CCCCCCCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc
Q psy18121         32 GELNLSGRKLK--DFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY   89 (109)
Q Consensus        32 GvL~Ls~rkLk--eFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~   89 (109)
                      .++..++++|+  ++|..+.    .+...+|| +.|  +|+.||.. +..+..|+.|.+++
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp----~~l~~L~L-s~N--~l~~l~~~~f~~l~~L~~L~L~~   64 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP----VDTTELVL-TGN--NLTALPPGLLDALPALRTAHLGA   64 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC----TTCSEEEC-TTS--CCSSCCTTTGGGCTTCCEEECCS
T ss_pred             CEEEeCCCCCccccCCCCCC----cCCCEEEC-CCC--cCCccChhhhhhccccCEEEecC
Confidence            47889999999  9997652    23445999 999  99999996 46788999999987

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=96.94  E-value=0.00091  Score=51.88  Aligned_cols=64  Identities=8%  Similarity=0.076  Sum_probs=43.4

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeeccC-chhhhhh
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYP-GLSMAIR  102 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P-~~~g~l~  102 (109)
                      ..+..++++|+++|..+.    .+...+|| +.|  +|+.+|+ .++.+..|+.|++++ .+..+| +.+.-+.
T Consensus        46 ~~v~c~~~~l~~iP~~~~----~~l~~L~L-~~n--~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~  112 (440)
T 3zyj_A           46 SKVICVRKNLREVPDGIS----TNTRLLNL-HEN--QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA  112 (440)
T ss_dssp             CEEECCSCCCSSCCSCCC----TTCSEEEC-CSC--CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCS
T ss_pred             CEEEeCCCCcCcCCCCCC----CCCcEEEc-cCC--cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCc
Confidence            467889999999998762    23333888 777  7877774 567777777777777 555554 3344333

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=96.92  E-value=0.0005  Score=55.55  Aligned_cols=66  Identities=11%  Similarity=-0.019  Sum_probs=35.1

Q ss_pred             ceeEecCCCCCCCCCC-CCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeecc-Cchhhhhh
Q psy18121         32 GELNLSGRKLKDFPNS-GGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITY-PGLSMAIR  102 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~-~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~-P~~~g~l~  102 (109)
                      -+|.|+++++.++|.. +.  .+..-..+|+ +.|  ++..+|+ .++.+..|++|++++ .+... |+.++.++
T Consensus        76 ~~L~L~~n~l~~l~~~~~~--~l~~L~~L~L-~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  145 (680)
T 1ziw_A           76 KVLNLQHNELSQLSDKTFA--FCTNLTELHL-MSN--SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE  145 (680)
T ss_dssp             CEEECCSSCCCCCCTTTTT--TCTTCSEEEC-CSS--CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCT
T ss_pred             CEEECCCCccCccChhhhc--cCCCCCEEEC-CCC--ccCccChhHccccCCCCEEECCCCcccccCchhhcccc
Confidence            4566666666666653 32  1332222666 666  6666664 466666666666666 33332 34444333

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=96.89  E-value=0.00074  Score=47.01  Aligned_cols=28  Identities=18%  Similarity=0.120  Sum_probs=13.4

Q ss_pred             EeeecCccccccc-cccccccccccceEEecc
Q psy18121         59 VVYFSRSGRKLKD-FPNSGGKYDLSDSVIVVY   89 (109)
Q Consensus        59 lDL~S~N~~rl~e-lP~~I~~F~~LksL~~~~   89 (109)
                      +|+ +.|  +++. .|..++.+..|+.|++++
T Consensus       117 L~L-s~n--~i~~~~~~~l~~l~~L~~L~L~~  145 (197)
T 4ezg_A          117 LDI-SHS--AHDDSILTKINTLPKVNSIDLSY  145 (197)
T ss_dssp             EEC-CSS--BCBGGGHHHHTTCSSCCEEECCS
T ss_pred             EEe-cCC--ccCcHhHHHHhhCCCCCEEEccC
Confidence            555 444  4443 344444555555555554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=96.86  E-value=0.00099  Score=49.59  Aligned_cols=34  Identities=3%  Similarity=-0.034  Sum_probs=18.8

Q ss_pred             EeeecCccccccccccccccccccceEEecc-eeeccCc
Q psy18121         59 VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPG   96 (109)
Q Consensus        59 lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~   96 (109)
                      +|+ +.|  +++.+|+ ++.+..|+.|++++ .+..+|.
T Consensus       161 L~L-~~N--~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~  195 (291)
T 1h6t_A          161 LSL-EDN--QISDIVP-LAGLTKLQNLYLSKNHISDLRA  195 (291)
T ss_dssp             EEC-CSS--CCCCCGG-GTTCTTCCEEECCSSCCCBCGG
T ss_pred             EEc-cCC--ccccchh-hcCCCccCEEECCCCcCCCChh
Confidence            555 555  5555555 55555555565555 5555443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=96.85  E-value=0.00097  Score=49.24  Aligned_cols=57  Identities=9%  Similarity=0.024  Sum_probs=38.0

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccC
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYP   95 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P   95 (109)
                      .+|.++++++.++|. +  ..+..-..+|+ +.|  +++++|+ ++.+..|++|++++ .+..+|
T Consensus        47 ~~L~l~~~~i~~~~~-~--~~~~~L~~L~l-~~n--~i~~~~~-~~~l~~L~~L~L~~n~i~~~~  104 (347)
T 4fmz_A           47 TKLVVAGEKVASIQG-I--EYLTNLEYLNL-NGN--QITDISP-LSNLVKLTNLYIGTNKITDIS  104 (347)
T ss_dssp             SEEECCSSCCCCCTT-G--GGCTTCCEEEC-CSS--CCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred             cEEEEeCCccccchh-h--hhcCCccEEEc-cCC--ccccchh-hhcCCcCCEEEccCCcccCch
Confidence            467788888888775 2  22433333777 777  7777777 77777777777777 555554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=96.83  E-value=0.0013  Score=48.53  Aligned_cols=68  Identities=13%  Similarity=0.048  Sum_probs=52.8

Q ss_pred             hhhhceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhh
Q psy18121         28 AHLSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRK  103 (109)
Q Consensus        28 A~kTGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K  103 (109)
                      ...=-+|.|+++++.++|. +  ..+..-..+|+ +.|  +++++| .++.+..|++|++++ .+..+|. +..+.+
T Consensus        65 ~~~L~~L~l~~n~i~~~~~-~--~~l~~L~~L~L-~~n--~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~  133 (347)
T 4fmz_A           65 LTNLEYLNLNGNQITDISP-L--SNLVKLTNLYI-GTN--KITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTK  133 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGG-G--TTCTTCCEEEC-CSS--CCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTT
T ss_pred             cCCccEEEccCCccccchh-h--hcCCcCCEEEc-cCC--cccCch-HHcCCCcCCEEECcCCcccCchh-hccCCc
Confidence            3444689999999999998 4  23544444999 888  999987 589999999999999 8877776 544444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=96.77  E-value=0.0014  Score=51.22  Aligned_cols=64  Identities=9%  Similarity=0.025  Sum_probs=42.3

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhh
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRK  103 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K  103 (109)
                      -.|.+++++++++|. .  ..+..-..+|+ |.|  +++.+|+ ++.+..|+.|++++ .+..+|. ++.+.+
T Consensus        49 ~~L~l~~~~i~~l~~-~--~~l~~L~~L~L-s~n--~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~  113 (466)
T 1o6v_A           49 TTLQADRLGIKSIDG-V--EYLNNLTQINF-SNN--QLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTN  113 (466)
T ss_dssp             CEEECCSSCCCCCTT-G--GGCTTCCEEEC-CSS--CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTT
T ss_pred             cEEecCCCCCccCcc-h--hhhcCCCEEEC-CCC--ccCCchh-hhccccCCEEECCCCccccChh-hcCCCC
Confidence            467788888888875 2  22443333888 777  7888877 77777777777777 6666655 444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=96.76  E-value=0.0011  Score=52.85  Aligned_cols=34  Identities=9%  Similarity=0.155  Sum_probs=16.9

Q ss_pred             EeeecCccccccccccccccccccceEEecc-eeeccCc
Q psy18121         59 VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPG   96 (109)
Q Consensus        59 lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~   96 (109)
                      +|+ +.|  +++.+| +++.+..|+.|++++ .+..+|+
T Consensus       178 L~L-~~n--~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~  212 (454)
T 1jl5_A          178 IAA-GNN--QLEELP-ELQNLPFLTAIYADNNSLKKLPD  212 (454)
T ss_dssp             EEC-CSS--CCSSCC-CCTTCTTCCEEECCSSCCSSCCC
T ss_pred             EEC-cCC--cCCcCc-cccCCCCCCEEECCCCcCCcCCC
Confidence            444 444  455554 345555555555555 4444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=96.75  E-value=0.001  Score=49.25  Aligned_cols=49  Identities=20%  Similarity=0.191  Sum_probs=43.1

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecc
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY   89 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~   89 (109)
                      -.|.|+++++.++|..+.     ..++ +|| |.|  +|+.+|. ...+..|+.|++++
T Consensus       254 ~~L~Ls~N~l~~lp~~~~-----~~L~~L~L-s~N--~l~~~~~-~~~l~~L~~L~L~~  303 (310)
T 4glp_A          254 NSLNLSFAGLEQVPKGLP-----AKLRVLDL-SSN--RLNRAPQ-PDELPEVDNLTLDG  303 (310)
T ss_dssp             CCEECCSSCCCSCCSCCC-----SCCSCEEC-CSC--CCCSCCC-TTSCCCCSCEECSS
T ss_pred             CEEECCCCCCCchhhhhc-----CCCCEEEC-CCC--cCCCCch-hhhCCCccEEECcC
Confidence            478999999999998762     4666 999 999  9999987 68999999999998

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=96.72  E-value=0.0013  Score=51.37  Aligned_cols=58  Identities=12%  Similarity=0.133  Sum_probs=30.2

Q ss_pred             hceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccC
Q psy18121         31 SGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYP   95 (109)
Q Consensus        31 TGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P   95 (109)
                      =-+|.|+++++.++|. +.  .+..-..+|+ +.|  ++..+|+ ++.+..|++|++++ .+..+|
T Consensus        70 L~~L~Ls~n~l~~~~~-~~--~l~~L~~L~l-~~n--~l~~~~~-~~~l~~L~~L~L~~n~l~~~~  128 (466)
T 1o6v_A           70 LTQINFSNNQLTDITP-LK--NLTKLVDILM-NNN--QIADITP-LANLTNLTGLTLFNNQITDID  128 (466)
T ss_dssp             CCEEECCSSCCCCCGG-GT--TCTTCCEEEC-CSS--CCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred             CCEEECCCCccCCchh-hh--ccccCCEEEC-CCC--ccccChh-hcCCCCCCEEECCCCCCCCCh
Confidence            3567777777777765 31  2332222555 544  5555555 55555555555555 444443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=96.71  E-value=0.0014  Score=52.22  Aligned_cols=56  Identities=5%  Similarity=-0.009  Sum_probs=32.0

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccC
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYP   95 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P   95 (109)
                      -+|.|+++++.++| .+  ..+..-..+|+ +.|  +|+.+|  ++.+..|+.|++++ .+..+|
T Consensus        45 ~~L~Ls~n~l~~~~-~l--~~l~~L~~L~L-s~n--~l~~~~--~~~l~~L~~L~Ls~N~l~~~~  101 (457)
T 3bz5_A           45 TSLDCHNSSITDMT-GI--EKLTGLTKLIC-TSN--NITTLD--LSQNTNLTYLACDSNKLTNLD  101 (457)
T ss_dssp             CEEECCSSCCCCCT-TG--GGCTTCSEEEC-CSS--CCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred             CEEEccCCCcccCh-hh--cccCCCCEEEc-cCC--cCCeEc--cccCCCCCEEECcCCCCceee
Confidence            35677777777776 33  22333333666 666  666665  56666666666666 554443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=96.57  E-value=0.0026  Score=53.98  Aligned_cols=49  Identities=10%  Similarity=-0.050  Sum_probs=25.1

Q ss_pred             eeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccc-ccccccccccceEEecc
Q psy18121         33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDF-PNSGGKYDLSDSVIVVY   89 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~el-P~~I~~F~~LksL~~~~   89 (109)
                      ++..++++|.++|. .    .+....+|| |.|  +++.+ |..++.+..|+.|++++
T Consensus         8 ~~dcs~~~L~~vP~-l----p~~l~~LdL-s~N--~i~~i~~~~~~~l~~L~~LdLs~   57 (844)
T 3j0a_A            8 IAFYRFCNLTQVPQ-V----LNTTERLLL-SFN--YIRTVTASSFPFLEQLQLLELGS   57 (844)
T ss_dssp             EEEESCCCSSCCCS-S----CTTCCEEEE-ESC--CCCEECSSSCSSCCSCSEEEECT
T ss_pred             EEEccCCCCCCCCC-C----CCCcCEEEC-CCC--cCCccChhHCcccccCeEEeCCC
Confidence            45556666666665 2    222223666 555  56555 23445555555555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=96.50  E-value=0.0018  Score=54.33  Aligned_cols=56  Identities=9%  Similarity=-0.019  Sum_probs=31.3

Q ss_pred             eeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccC
Q psy18121         33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYP   95 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P   95 (109)
                      .|.|+++++.++|. +  ..+..-..+|| |.|  +|+.+|+ ++.+..|+.|++++ .+..+|
T Consensus        47 ~L~l~~n~i~~l~~-l--~~l~~L~~L~L-s~N--~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~  103 (605)
T 1m9s_A           47 QIIANNSDIKSVQG-I--QYLPNVTKLFL-NGN--KLTDIKP-LTNLKNLGWLFLDENKIKDLS  103 (605)
T ss_dssp             CCBCTTCCCCCCTT-G--GGCTTCCEEEC-TTS--CCCCCGG-GGGCTTCCEEECCSSCCCCCT
T ss_pred             EEECcCCCCCCChH-H--ccCCCCCEEEe-eCC--CCCCChh-hccCCCCCEEECcCCCCCCCh
Confidence            45666666666663 2  22333333666 666  6666665 56666666666666 444444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=96.50  E-value=0.0026  Score=53.78  Aligned_cols=54  Identities=17%  Similarity=0.164  Sum_probs=39.4

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecc-eeeccCc
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPG   96 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~   96 (109)
                      -+|.+++++|+++|..+.     ..++ +|+ +.|  +|+.||.   .+..|++|++++ .+.++|.
T Consensus        43 ~~L~ls~n~L~~lp~~l~-----~~L~~L~L-~~N--~l~~lp~---~l~~L~~L~Ls~N~l~~lp~   98 (622)
T 3g06_A           43 AVLNVGESGLTTLPDCLP-----AHITTLVI-PDN--NLTSLPA---LPPELRTLEVSGNQLTSLPV   98 (622)
T ss_dssp             CEEECCSSCCSCCCSCCC-----TTCSEEEE-CSC--CCSCCCC---CCTTCCEEEECSCCCSCCCC
T ss_pred             cEEEecCCCcCccChhhC-----CCCcEEEe-cCC--CCCCCCC---cCCCCCEEEcCCCcCCcCCC
Confidence            579999999999998762     2344 777 777  7777777   466777777777 6666665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=96.45  E-value=0.0028  Score=50.57  Aligned_cols=63  Identities=5%  Similarity=-0.137  Sum_probs=37.3

Q ss_pred             hhceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhh
Q psy18121         30 LSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRK  103 (109)
Q Consensus        30 kTGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K  103 (109)
                      .=-+|.|+++++.++|  +  ..+..-..+|+ +.|  +|+.+|  ++.+..|+.|++++ .+..+|  ++.+.+
T Consensus        65 ~L~~L~Ls~n~l~~~~--~--~~l~~L~~L~L-s~N--~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~  128 (457)
T 3bz5_A           65 GLTKLICTSNNITTLD--L--SQNTNLTYLAC-DSN--KLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPL  128 (457)
T ss_dssp             TCSEEECCSSCCSCCC--C--TTCTTCSEEEC-CSS--CCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTT
T ss_pred             CCCEEEccCCcCCeEc--c--ccCCCCCEEEC-cCC--CCceee--cCCCCcCCEEECCCCcCCeec--CCCCCc
Confidence            3356777777777776  3  12333233777 666  676665  66666677776666 555554  444443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=96.34  E-value=0.0033  Score=52.77  Aligned_cols=56  Identities=21%  Similarity=0.137  Sum_probs=28.0

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeecc
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITY   94 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~   94 (109)
                      -.|.|+++++.++|. +  ..+..-..+|| +.|  +|+.+| .++.+..|+.|++++ .+..+
T Consensus        68 ~~L~Ls~N~l~~~~~-l--~~l~~L~~L~L-s~N--~l~~l~-~l~~l~~L~~L~Ls~N~l~~l  124 (605)
T 1m9s_A           68 TKLFLNGNKLTDIKP-L--TNLKNLGWLFL-DEN--KIKDLS-SLKDLKKLKSLSLEHNGISDI  124 (605)
T ss_dssp             CEEECTTSCCCCCGG-G--GGCTTCCEEEC-CSS--CCCCCT-TSTTCTTCCEEECTTSCCCCC
T ss_pred             CEEEeeCCCCCCChh-h--ccCCCCCEEEC-cCC--CCCCCh-hhccCCCCCEEEecCCCCCCC
Confidence            356666666666655 2  12332222555 555  555544 455555555555555 44443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=95.92  E-value=0.0064  Score=51.54  Aligned_cols=12  Identities=25%  Similarity=0.265  Sum_probs=6.5

Q ss_pred             eeEecCCCCCCC
Q psy18121         33 ELNLSGRKLKDF   44 (109)
Q Consensus        33 vL~Ls~rkLkeF   44 (109)
                      +|.|+++++..+
T Consensus        77 ~L~Ls~N~l~~~   88 (844)
T 3j0a_A           77 ILDLGSSKIYFL   88 (844)
T ss_dssp             EEECTTCCCCEE
T ss_pred             EEECCCCcCccc
Confidence            455555555555

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=95.40  E-value=0.0046  Score=45.23  Aligned_cols=69  Identities=3%  Similarity=-0.210  Sum_probs=47.1

Q ss_pred             hhhceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccc--cccccccccccceEEecc-eee-ccCchhhhhh
Q psy18121         29 HLSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKD--FPNSGGKYDLSDSVIVVY-FNI-TYPGLSMAIR  102 (109)
Q Consensus        29 ~kTGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~e--lP~~I~~F~~LksL~~~~-~l~-~~P~~~g~l~  102 (109)
                      ..--.|.++++++.+.+...  ..+..-..+|+ +.|  ++..  +|..++.+..|++|++++ .+. ..|+.++.+.
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~--~~~~~L~~L~L-~~~--~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~  142 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEH--FSPFRVQHMDL-SNS--VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS  142 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSC--CCCBCCCEEEC-TTC--EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCT
T ss_pred             ccceEEEcCCccccccchhh--ccCCCCCEEEc-cCC--CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCC
Confidence            34467888888888887776  44554444888 877  7764  788888888888888888 332 3444444433

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=94.98  E-value=0.057  Score=41.66  Aligned_cols=63  Identities=17%  Similarity=0.017  Sum_probs=46.4

Q ss_pred             hhhceeEecCCCCCCCCC---CCCCcccCCcEEEeeecCcccccccccccccccc--ccceEEecc-ee-eccCch
Q psy18121         29 HLSGELNLSGRKLKDFPN---SGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYD--LSDSVIVVY-FN-ITYPGL   97 (109)
Q Consensus        29 ~kTGvL~Ls~rkLkeFP~---~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~--~LksL~~~~-~l-~~~P~~   97 (109)
                      ..=-.|.|++++|..++.   .+  ..+..-..+|| |.|  +|+.+ .++..+.  .|+.|.+++ .+ .++|+.
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~--~~l~~L~~L~L-s~N--~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~  239 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIV--QKAPNLKILNL-SGN--ELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQ  239 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHH--HHSTTCCEEEC-TTS--CCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSH
T ss_pred             CCCCEEECCCCCCCCCccchhHH--hhCCCCCEEEC-CCC--ccCCc-hhhhhcccCCcceEEccCCcCccccCcc
Confidence            345789999999998764   22  23444444999 999  99999 5577777  999999999 43 457754

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=93.33  E-value=0.012  Score=44.57  Aligned_cols=28  Identities=4%  Similarity=-0.235  Sum_probs=17.5

Q ss_pred             EeeecCccccccc-----ccccc-ccccccceEEecc
Q psy18121         59 VVYFSRSGRKLKD-----FPNSG-GKYDLSDSVIVVY   89 (109)
Q Consensus        59 lDL~S~N~~rl~e-----lP~~I-~~F~~LksL~~~~   89 (109)
                      +|| +.|  +|+.     +|..+ +++..|++|++++
T Consensus       279 L~L-~~n--~i~~~g~~~l~~~l~~~l~~L~~L~l~~  312 (386)
T 2ca6_A          279 LRL-QYN--EIELDAVRTLKTVIDEKMPDLLFLELNG  312 (386)
T ss_dssp             EEC-CSS--CCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             EEC-cCC--cCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence            666 555  6665     66665 4566666666666

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=93.30  E-value=0.012  Score=43.09  Aligned_cols=29  Identities=14%  Similarity=-0.030  Sum_probs=16.0

Q ss_pred             EeeecCcccc-c-cccccccccccccceEEecce
Q psy18121         59 VVYFSRSGRK-L-KDFPNSGGKYDLSDSVIVVYF   90 (109)
Q Consensus        59 lDL~S~N~~r-l-~elP~~I~~F~~LksL~~~~~   90 (109)
                      +|+ +.|  . + .+.|..++++..|++|+++++
T Consensus       227 L~l-~~~--~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          227 LDL-SDS--VMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             EEC-TTC--TTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             EeC-CCC--CcCCHHHHHHHhCCCCCCEeeCCCC
Confidence            555 555  4 3 244555566666666666653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=92.82  E-value=0.023  Score=42.99  Aligned_cols=33  Identities=6%  Similarity=-0.247  Sum_probs=16.8

Q ss_pred             EeeecCccccccccccc-c----ccc-cccceEEecc-eeecc
Q psy18121         59 VVYFSRSGRKLKDFPNS-G----GKY-DLSDSVIVVY-FNITY   94 (109)
Q Consensus        59 lDL~S~N~~rl~elP~~-I----~~F-~~LksL~~~~-~l~~~   94 (109)
                      +|| |.|  +++..+.. +    ..+ ..|+.|++++ .+...
T Consensus        85 L~L-s~n--~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  124 (362)
T 3goz_A           85 LNL-SGN--FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK  124 (362)
T ss_dssp             EEC-CSS--CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred             EEC-cCC--cCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence            666 555  56554443 2    222 5666666666 44333

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=92.65  E-value=0.012  Score=44.49  Aligned_cols=60  Identities=2%  Similarity=-0.055  Sum_probs=34.5

Q ss_pred             HHHhhhhceeEecCCCCC------CCCCCCCCcccCCcEEEeeecCccccc-----cccccccccccccceEEecc
Q psy18121         25 LEEAHLSGELNLSGRKLK------DFPNSGGKYDLSDSVIVVYFSRSGRKL-----KDFPNSGGKYDLSDSVIVVY   89 (109)
Q Consensus        25 LE~A~kTGvL~Ls~rkLk------eFP~~~~~~dLsdtlrlDL~S~N~~rl-----~elP~~I~~F~~LksL~~~~   89 (109)
                      +.....=-.|.|+++++.      -+|..+  ..+..-..+|| |.|  +|     ..+|..+..+..|+.|++++
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l--~~~~~L~~L~L-s~n--~l~~~g~~~l~~~l~~~~~L~~L~L~~  253 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGL--AYCQELKVLDL-QDN--TFTHLGSSALAIALKSWPNLRELGLND  253 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTG--GGCTTCCEEEC-CSS--CCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHh--hcCCCccEEEC-cCC--CCCcHHHHHHHHHHccCCCcCEEECCC
Confidence            333334456777777776      233233  11322223777 666  66     56677777777777777776

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=92.42  E-value=0.06  Score=41.53  Aligned_cols=42  Identities=10%  Similarity=-0.153  Sum_probs=33.7

Q ss_pred             EEEeeecCccccccccc---cccccccccceEEecc-eeeccCchhhhhh
Q psy18121         57 VIVVYFSRSGRKLKDFP---NSGGKYDLSDSVIVVY-FNITYPGLSMAIR  102 (109)
Q Consensus        57 lrlDL~S~N~~rl~elP---~~I~~F~~LksL~~~~-~l~~~P~~~g~l~  102 (109)
                      ..+|| |.|  +|+.++   ..++.|..|++|++++ .+..+ ++++.++
T Consensus       173 ~~L~L-s~N--~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~  218 (267)
T 3rw6_A          173 LSLNL-SNN--RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIK  218 (267)
T ss_dssp             CEEEC-TTS--CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGT
T ss_pred             CEEEC-CCC--CCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcc
Confidence            34999 999  999876   5678999999999999 77777 4456555

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=92.15  E-value=0.023  Score=42.99  Aligned_cols=59  Identities=17%  Similarity=-0.021  Sum_probs=44.1

Q ss_pred             hceeEecCCCCCCCCC-----CCCCcccCCcEE-EeeecCcccccccc-ccccccc-----cccceEEecc-eeecc
Q psy18121         31 SGELNLSGRKLKDFPN-----SGGKYDLSDSVI-VVYFSRSGRKLKDF-PNSGGKY-----DLSDSVIVVY-FNITY   94 (109)
Q Consensus        31 TGvL~Ls~rkLkeFP~-----~~~~~dLsdtlr-lDL~S~N~~rl~el-P~~I~~F-----~~LksL~~~~-~l~~~   94 (109)
                      =-.|.|+++++.+.+.     .+  ..+...++ +|| |.|  +|... |..++.+     ..|+.|++++ .+...
T Consensus        24 L~~L~Ls~n~l~~~~~~~l~~~l--~~~~~~L~~L~L-s~N--~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~   95 (362)
T 3goz_A           24 VTSLDLSLNNLYSISTVELIQAF--ANTPASVTSLNL-SGN--SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK   95 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHH--HTCCTTCCEEEC-CSS--CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred             ceEEEccCCCCChHHHHHHHHHH--HhCCCceeEEEC-cCC--CCCHHHHHHHHHHHhccCCCccEEECcCCcCChH
Confidence            4579999999999985     22  22443566 999 888  99988 4467775     9999999999 55433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=90.33  E-value=0.22  Score=37.02  Aligned_cols=61  Identities=8%  Similarity=0.042  Sum_probs=43.5

Q ss_pred             hhhceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccc-cccccccc-eEEecceeeccC
Q psy18121         29 HLSGELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNS-GGKYDLSD-SVIVVYFNITYP   95 (109)
Q Consensus        29 ~kTGvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~-I~~F~~Lk-sL~~~~~l~~~P   95 (109)
                      ..=-.+.|++++++++|..+  +.=...++ +++ ++|   ++.+|.. +..+..|+ .+.+.+.+.+++
T Consensus       226 ~~L~~l~L~~n~i~~I~~~a--F~~~~~L~~l~l-~~n---i~~I~~~aF~~~~~L~~~l~l~~~l~~I~  289 (329)
T 3sb4_A          226 PNLVSLDISKTNATTIPDFT--FAQKKYLLKIKL-PHN---LKTIGQRVFSNCGRLAGTLELPASVTAIE  289 (329)
T ss_dssp             TTCCEEECTTBCCCEECTTT--TTTCTTCCEEEC-CTT---CCEECTTTTTTCTTCCEEEEECTTCCEEC
T ss_pred             CCCeEEECCCCCcceecHhh--hhCCCCCCEEEC-Ccc---cceehHHHhhCChhccEEEEEcccceEEc
Confidence            34457889988999999875  33233344 888 777   8888874 57777788 888877666665

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=85.59  E-value=0.095  Score=39.81  Aligned_cols=11  Identities=18%  Similarity=0.259  Sum_probs=5.3

Q ss_pred             eeEecCCCCCC
Q psy18121         33 ELNLSGRKLKD   43 (109)
Q Consensus        33 vL~Ls~rkLke   43 (109)
                      .|.|+++++.+
T Consensus       203 ~L~L~~n~l~~  213 (461)
T 1z7x_W          203 ALKLESCGVTS  213 (461)
T ss_dssp             EEECTTSCCBT
T ss_pred             EEEccCCCCcH
Confidence            44455554444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=84.25  E-value=0.17  Score=38.38  Aligned_cols=57  Identities=14%  Similarity=0.045  Sum_probs=34.6

Q ss_pred             hhhceeEecCCCCCCCCC-CCCCcccCC---cEE-EeeecCcccccc-----ccccccccccccceEEecc
Q psy18121         29 HLSGELNLSGRKLKDFPN-SGGKYDLSD---SVI-VVYFSRSGRKLK-----DFPNSGGKYDLSDSVIVVY   89 (109)
Q Consensus        29 ~kTGvL~Ls~rkLkeFP~-~~~~~dLsd---tlr-lDL~S~N~~rl~-----elP~~I~~F~~LksL~~~~   89 (109)
                      ..=-+|.|+++++.+... .+. ..+..   .++ +|+ +.|  ++.     .+|..+..+..|++|++++
T Consensus        56 ~~L~~L~Ls~n~l~~~~~~~l~-~~l~~~~~~L~~L~L-~~n--~i~~~~~~~l~~~l~~~~~L~~L~Ls~  122 (461)
T 1z7x_W           56 PALAELNLRSNELGDVGVHCVL-QGLQTPSCKIQKLSL-QNC--CLTGAGCGVLSSTLRTLPTLQELHLSD  122 (461)
T ss_dssp             TTCCEEECTTCCCHHHHHHHHH-HTTCSTTCCCCEEEC-TTS--CCBGGGHHHHHHHTTSCTTCCEEECCS
T ss_pred             CCcCEEeCCCCcCChHHHHHHH-HHHhhCCCceeEEEc-cCC--CCCHHHHHHHHHHHccCCceeEEECCC
Confidence            444567777776655211 110 01221   355 888 777  777     5677788888888888887

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=83.10  E-value=0.063  Score=42.19  Aligned_cols=26  Identities=15%  Similarity=-0.046  Sum_probs=11.8

Q ss_pred             cccccccccccceEEecc-eeeccCch
Q psy18121         72 FPNSGGKYDLSDSVIVVY-FNITYPGL   97 (109)
Q Consensus        72 lP~~I~~F~~LksL~~~~-~l~~~P~~   97 (109)
                      +|..+..+..|++|++++ .+..+|+.
T Consensus       212 l~~~~~~~~~L~~L~L~~~~~~~l~~~  238 (592)
T 3ogk_B          212 LETIARNCRSLVSVKVGDFEILELVGF  238 (592)
T ss_dssp             HHHHHHHCTTCCEEECSSCBGGGGHHH
T ss_pred             HHHHHhhCCCCcEEeccCccHHHHHHH
Confidence            333344445555555555 33334433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	109
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.08
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.91
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.83
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.74
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.71
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.68
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.66
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.61
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.57
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.47
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.46
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.44
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.41
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.35
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.32
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.23
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.15
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	96.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	96.95
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	96.93
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	96.84
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	96.83
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	96.82
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.78
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	96.71
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	96.52
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	96.37
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	96.37
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	94.23
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	92.46

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.45  E-value=8.1e-08  Score=63.72  Aligned_cols=59  Identities=14%  Similarity=0.115  Sum_probs=30.3

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCc
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPG   96 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~   96 (109)
                      -.|.|++++++++|..+  ..+..-..+|+ +.|  +|+++|. ++.+..|++|++++ ++..+|+
T Consensus        23 ~~L~ls~N~l~~lp~~~--~~l~~L~~L~l-~~N--~i~~l~~-~~~l~~L~~L~l~~N~i~~~~~   82 (124)
T d1dcea3          23 THLDLSHNRLRALPPAL--AALRCLEVLQA-SDN--ALENVDG-VANLPRLQELLLCNNRLQQSAA   82 (124)
T ss_dssp             CEEECCSSCCCCCCGGG--GGCTTCCEEEC-CSS--CCCCCGG-GTTCSSCCEEECCSSCCCSSST
T ss_pred             CEEECCCCccCcchhhh--hhhhccccccc-ccc--cccccCc-cccccccCeEECCCCccCCCCC
Confidence            34555555555555544  22333222555 555  5555553 55555555555555 5555543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.08  E-value=2.2e-06  Score=56.58  Aligned_cols=67  Identities=13%  Similarity=0.044  Sum_probs=53.5

Q ss_pred             eeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhhhhh
Q psy18121         33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRKAQW  106 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K~~~  106 (109)
                      +|.|+++++.++|. +  -.+..-..+|+ |.|  +|+++|+.++.+.+|+.|++++ .+..+|+ ++.+.+-++
T Consensus         2 ~L~Ls~n~l~~l~~-l--~~l~~L~~L~l-s~N--~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~   69 (124)
T d1dcea3           2 VLHLAHKDLTVLCH-L--EQLLLVTHLDL-SHN--RLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQE   69 (124)
T ss_dssp             EEECTTSCCSSCCC-G--GGGTTCCEEEC-CSS--CCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCE
T ss_pred             EEEcCCCCCCCCcc-c--ccCCCCCEEEC-CCC--ccCcchhhhhhhhcccccccccccccccCc-cccccccCe
Confidence            78899999999985 4  23555445999 888  9999999999999999999999 8888886 555555444

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=4.8e-06  Score=59.34  Aligned_cols=71  Identities=17%  Similarity=0.156  Sum_probs=48.2

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc-eeeccCchhhhhhhhhh
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYPGLSMAIRKAQW  106 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P~~~g~l~K~~~  106 (109)
                      -+|.++++++..+|...- ..+.....+|+ +.|  +++.+|++ ++.+..|++|++++ .+.++|+.+..+++-++
T Consensus       127 ~~L~l~~n~l~~l~~~~~-~~l~~l~~l~l-~~N--~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~  199 (266)
T d1p9ag_         127 QELYLKGNELKTLPPGLL-TPTPKLEKLSL-ANN--NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPF  199 (266)
T ss_dssp             CEEECTTSCCCCCCTTTT-TTCTTCCEEEC-TTS--CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSE
T ss_pred             ccccccccccceeccccc-cccccchhccc-ccc--cccccCccccccccccceeecccCCCcccChhHCCCCCCCE
Confidence            467777777777777651 12333333788 777  78888765 57788888888887 78888877766655443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.83  E-value=6.1e-06  Score=57.79  Aligned_cols=60  Identities=22%  Similarity=0.302  Sum_probs=49.2

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhh
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRK  103 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K  103 (109)
                      .+|.|++++++++|....      .++ +|+ +.|  +|+++|..   ..+|++|++++ .+.++|+....|.+
T Consensus       287 ~~L~Ls~N~l~~lp~~~~------~L~~L~L-~~N--~L~~l~~~---~~~L~~L~L~~N~L~~lp~~~~~L~~  348 (353)
T d1jl5a_         287 EELNVSNNKLIELPALPP------RLERLIA-SFN--HLAEVPEL---PQNLKQLHVEYNPLREFPDIPESVED  348 (353)
T ss_dssp             CEEECCSSCCSCCCCCCT------TCCEEEC-CSS--CCSCCCCC---CTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred             CEEECCCCccCccccccC------CCCEEEC-CCC--cCCccccc---cCCCCEEECcCCcCCCCCccccccCe
Confidence            489999999999997542      354 999 888  99999975   35799999999 99999987766654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.75  E-value=1.4e-05  Score=56.98  Aligned_cols=60  Identities=10%  Similarity=0.096  Sum_probs=30.2

Q ss_pred             eeEecCCCCCCCCCC-CCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeeccCch
Q psy18121         33 ELNLSGRKLKDFPNS-GGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYPGL   97 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~-~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P~~   97 (109)
                      +|.|++++++++|+. +.  .+..-..+|+ +.|  ++..+|+ .+..+..|++|++++ .+.++|..
T Consensus        35 ~L~Ls~N~i~~l~~~~f~--~l~~L~~L~l-~~n--~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~   97 (305)
T d1xkua_          35 LLDLQNNKITEIKDGDFK--NLKNLHTLIL-INN--KISKISPGAFAPLVKLERLYLSKNQLKELPEK   97 (305)
T ss_dssp             EEECCSSCCCCBCTTTTT--TCTTCCEEEC-CSS--CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS
T ss_pred             EEECcCCcCCCcChhHhh--cccccccccc-ccc--cccccchhhhhCCCccCEecccCCccCcCccc
Confidence            455555555555543 21  2332222555 555  5555533 355555555555555 55555544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.74  E-value=1.3e-05  Score=54.86  Aligned_cols=62  Identities=11%  Similarity=-0.065  Sum_probs=38.3

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc-eeeccCch
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYPGL   97 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P~~   97 (109)
                      -.|.|+++++..+|...- ..+..-..+|| |.|  +|+.+|+. +..+..|+.|++++ .+.++|..
T Consensus        57 ~~L~L~~N~i~~~~~~~~-~~~~~L~~L~L-s~N--~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~  120 (192)
T d1w8aa_          57 VKLELKRNQLTGIEPNAF-EGASHIQELQL-GEN--KIKEISNKMFLGLHQLKTLNLYDNQISCVMPG  120 (192)
T ss_dssp             CEEECCSSCCCCBCTTTT-TTCTTCCEEEC-CSC--CCCEECSSSSTTCTTCCEEECCSSCCCEECTT
T ss_pred             eeeecccccccccccccc-ccccccceeee-ccc--cccccCHHHHhCCCcccccccCCccccccCHH
Confidence            356666777766666441 11332223777 777  77777764 56777777777777 77776543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.71  E-value=1.2e-05  Score=56.25  Aligned_cols=57  Identities=21%  Similarity=0.193  Sum_probs=42.0

Q ss_pred             hceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchh
Q psy18121         31 SGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLS   98 (109)
Q Consensus        31 TGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~   98 (109)
                      .-+|.|++++|.++|...     .....+|| |.|  +|+++|..++   .|+.|++++ .+..+|+..
T Consensus        40 l~~LdLs~~~L~~lp~~~-----~~L~~L~L-s~N--~l~~lp~~~~---~L~~L~l~~n~l~~l~~lp   97 (353)
T d1jl5a_          40 AHELELNNLGLSSLPELP-----PHLESLVA-SCN--SLTELPELPQ---SLKSLLVDNNNLKALSDLP   97 (353)
T ss_dssp             CSEEECTTSCCSCCCSCC-----TTCSEEEC-CSS--CCSSCCCCCT---TCCEEECCSSCCSCCCSCC
T ss_pred             CCEEEeCCCCCCCCCCCC-----CCCCEEEC-CCC--CCcccccchh---hhhhhhhhhcccchhhhhc
Confidence            469999999999999654     22233999 888  9999998764   566777776 666665543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=2.1e-05  Score=53.69  Aligned_cols=61  Identities=16%  Similarity=0.103  Sum_probs=39.4

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchh
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLS   98 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~   98 (109)
                      .+|.|+++++..+|...  ..+..-..+|| |.|  +|+++| .++.+..|++|++++ .+..+|+.+
T Consensus        21 r~L~L~~n~I~~i~~~~--~~l~~L~~L~L-s~N--~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~   82 (162)
T d1a9na_          21 RELDLRGYKIPVIENLG--ATLDQFDAIDF-SDN--EIRKLD-GFPLLRRLKTLLVNNNRICRIGEGL   82 (162)
T ss_dssp             EEEECTTSCCCSCCCGG--GGTTCCSEEEC-CSS--CCCEEC-CCCCCSSCCEEECCSSCCCEECSCH
T ss_pred             cEEECCCCCCCccCccc--cccccCCEEEC-CCC--CCCccC-CcccCcchhhhhcccccccCCCccc
Confidence            46777777777776543  22433333777 777  777775 366777777777777 666666543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=7.8e-06  Score=58.23  Aligned_cols=65  Identities=15%  Similarity=0.107  Sum_probs=31.5

Q ss_pred             eeEecCCCCCCCCCC-CCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhh
Q psy18121         33 ELNLSGRKLKDFPNS-GGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRK  103 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~-~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K  103 (109)
                      +|.|++++++++|.. +.  .+..-..+|| +.|  +|+++|.+ +.+..|+.|++++ .+..+|+.+..+.+
T Consensus        35 ~L~Ls~N~i~~l~~~~f~--~l~~L~~L~L-~~N--~l~~l~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~l~~  101 (266)
T d1p9ag_          35 ILHLSENLLYTFSLATLM--PYTRLTQLNL-DRA--ELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPA  101 (266)
T ss_dssp             EEECTTSCCSEEEGGGGT--TCTTCCEEEC-TTS--CCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTT
T ss_pred             EEECcCCcCCCcCHHHhh--cccccccccc-ccc--cccccccc-cccccccccccccccccccccccccccc
Confidence            455555555555543 21  1332222555 555  55555542 4555555555555 55555554444443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.61  E-value=2.2e-05  Score=55.87  Aligned_cols=63  Identities=13%  Similarity=-0.004  Sum_probs=48.6

Q ss_pred             hceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCch
Q psy18121         31 SGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGL   97 (109)
Q Consensus        31 TGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~   97 (109)
                      -.+|.++++++.++|...- ..+..-..+|| +.|  +|+++|.++.++..|+.|++++ .+.++|..
T Consensus       197 l~~L~~s~n~l~~~~~~~~-~~l~~L~~L~L-~~N--~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~  260 (305)
T d1xkua_         197 LAKLGLSFNSISAVDNGSL-ANTPHLRELHL-NNN--KLVKVPGGLADHKYIQVVYLHNNNISAIGSN  260 (305)
T ss_dssp             CCEEECCSSCCCEECTTTG-GGSTTCCEEEC-CSS--CCSSCCTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred             ccccccccccccccccccc-cccccceeeec-ccc--cccccccccccccCCCEEECCCCccCccChh
Confidence            4578889999999876541 22444344999 888  8999999999999999999998 88887653

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.57  E-value=2.9e-05  Score=55.63  Aligned_cols=67  Identities=10%  Similarity=0.078  Sum_probs=50.2

Q ss_pred             hceeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccc-ccccccccccccceEEecc-eee-ccCchhhhhhh
Q psy18121         31 SGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLK-DFPNSGGKYDLSDSVIVVY-FNI-TYPGLSMAIRK  103 (109)
Q Consensus        31 TGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~-elP~~I~~F~~LksL~~~~-~l~-~~P~~~g~l~K  103 (109)
                      --.+.++++.+...|....  .+.....+|| |.|  +|+ .+|.+|+++..|+.|++++ .+. .+|+ ++.+++
T Consensus       223 l~~l~~~~~~l~~~~~~~~--~~~~L~~L~L-s~N--~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~  292 (313)
T d1ogqa_         223 TQKIHLAKNSLAFDLGKVG--LSKNLNGLDL-RNN--RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQR  292 (313)
T ss_dssp             CSEEECCSSEECCBGGGCC--CCTTCCEEEC-CSS--CCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGG
T ss_pred             ccccccccccccccccccc--cccccccccC-ccC--eecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCC
Confidence            3467788888876666552  2444445999 888  998 8999999999999999999 776 7885 455544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=3.8e-05  Score=52.04  Aligned_cols=63  Identities=10%  Similarity=-0.021  Sum_probs=38.4

Q ss_pred             eeEecCC-CCCCCCCCCCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc-eeeccCchhh
Q psy18121         33 ELNLSGR-KLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYPGLSM   99 (109)
Q Consensus        33 vL~Ls~r-kLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P~~~g   99 (109)
                      .|.|+++ .|+.+|...- ..+..-..+|+ +.|  +|+.+|+. +..+..|+.|++++ .+.++|..+.
T Consensus        35 ~L~l~~n~~l~~i~~~~f-~~l~~L~~L~L-s~N--~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~  100 (156)
T d2ifga3          35 ELYIENQQHLQHLELRDL-RGLGELRNLTI-VKS--GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV  100 (156)
T ss_dssp             EEECCSCSSCCEECGGGS-CSCCCCSEEEC-CSS--CCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT
T ss_pred             eeecCCCccccccCchhh-ccccccCccee-ecc--ccCCcccccccccccccceeccCCCCcccChhhh
Confidence            4666544 4777776430 12444333777 777  77777554 56677777777777 7777776543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=6.6e-05  Score=53.27  Aligned_cols=58  Identities=9%  Similarity=-0.013  Sum_probs=43.2

Q ss_pred             eeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeeccCch
Q psy18121         33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYPGL   97 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P~~   97 (109)
                      ++..++++|+++|..+    .+.+..+|| |.|  +|+++|+ .+..+..|++|++++ .+..+|..
T Consensus        15 ~v~c~~~~L~~iP~~i----p~~~~~L~L-s~N--~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~   74 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGI----PAASQRIFL-HGN--RISHVPAASFRACRNLTILWLHSNVLARIDAA   74 (284)
T ss_dssp             EEECCSSCCSSCCTTC----CTTCSEEEC-TTS--CCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             EEEcCCCCCCccCCCC----CCCCCEEEC-cCC--cCCCCCHHHhhccccccccccccccccccccc
Confidence            3567888899998765    233334899 888  8999987 478888899999988 66665543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.44  E-value=9.1e-05  Score=50.39  Aligned_cols=55  Identities=13%  Similarity=0.101  Sum_probs=29.0

Q ss_pred             eeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccc-ccc-ccccccccceEEecc-eeecc
Q psy18121         33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKD-FPN-SGGKYDLSDSVIVVY-FNITY   94 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~e-lP~-~I~~F~~LksL~~~~-~l~~~   94 (109)
                      ++..++++|.++|..+    -+++.++|| |.|  +|+. +|. .++.+..|++|++++ .+..+
T Consensus        12 ~v~Cs~~~L~~iP~~l----p~~l~~L~L-s~N--~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~   69 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDI----PLHTTELLL-NDN--ELGRISSDGLFGRLPHLVKLELKRNQLTGI   69 (192)
T ss_dssp             EEECTTSCCSSCCSCC----CTTCSEEEC-CSC--CCCSBCCSCSGGGCTTCCEEECCSSCCCCB
T ss_pred             EEEEeCCCcCccCCCC----CCCCCEEEe-CCC--CCcccccccccCCCceEeeeeccccccccc
Confidence            3556666666666554    123344666 655  6654 322 335566666666655 44433

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.41  E-value=8.5e-05  Score=53.09  Aligned_cols=57  Identities=19%  Similarity=0.121  Sum_probs=42.8

Q ss_pred             eEecCCCCC---CCCCCCCCcccCCcEEEeeecC-cccccc-ccccccccccccceEEecc-eeeccC
Q psy18121         34 LNLSGRKLK---DFPNSGGKYDLSDSVIVVYFSR-SGRKLK-DFPNSGGKYDLSDSVIVVY-FNITYP   95 (109)
Q Consensus        34 L~Ls~rkLk---eFP~~~~~~dLsdtlrlDL~S~-N~~rl~-elP~~I~~F~~LksL~~~~-~l~~~P   95 (109)
                      |.|+++.+.   ++|.++  ..|+.-..+|| |. |  .|. ++|++|+++..|++|++++ .+..+|
T Consensus        55 L~L~~~~l~g~~~lp~~l--~~L~~L~~L~L-s~~N--~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~  117 (313)
T d1ogqa_          55 LDLSGLNLPKPYPIPSSL--ANLPYLNFLYI-GGIN--NLVGPIPPAIAKLTQLHYLYITHTNVSGAI  117 (313)
T ss_dssp             EEEECCCCSSCEECCGGG--GGCTTCSEEEE-EEET--TEESCCCGGGGGCTTCSEEEEEEECCEEEC
T ss_pred             EECCCCCCCCCCCCChHH--hcCcccccccc-cccc--ccccccccccccccccchhhhccccccccc
Confidence            678888877   578887  44766555888 65 6  676 7899999999999999888 555543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=4.3e-05  Score=51.75  Aligned_cols=54  Identities=7%  Similarity=-0.125  Sum_probs=33.7

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY   89 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~   89 (109)
                      ..|.|++++|+.+|..+- ..+.....+|| |.|  +|+++|..+-....|.+|++++
T Consensus        59 ~~L~Ls~N~l~~i~~~~f-~~l~~L~~L~L-s~N--~l~~l~~~~~~~~~l~~L~L~~  112 (156)
T d2ifga3          59 RNLTIVKSGLRFVAPDAF-HFTPRLSRLNL-SFN--ALESLSWKTVQGLSLQELVLSG  112 (156)
T ss_dssp             SEEECCSSCCCEECTTGG-GSCSCCCEEEC-CSS--CCSCCCSTTTCSCCCCEEECCS
T ss_pred             CcceeeccccCCcccccc-cccccccceec-cCC--CCcccChhhhccccccccccCC
Confidence            467777777777766540 12333333777 666  7777777666555677777776

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=4.4e-05  Score=52.02  Aligned_cols=59  Identities=5%  Similarity=0.026  Sum_probs=40.1

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccccc-ccccccceEEecc-eeeccCc
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSG-GKYDLSDSVIVVY-FNITYPG   96 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I-~~F~~LksL~~~~-~l~~~P~   96 (109)
                      -+|.|++++++++|. +.  .+..-..+|+ |.|  +++++|+.+ ..+..|++|++++ .+..+|+
T Consensus        44 ~~L~Ls~N~i~~l~~-~~--~l~~L~~L~l-s~N--~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~  104 (162)
T d1a9na_          44 DAIDFSDNEIRKLDG-FP--LLRRLKTLLV-NNN--RICRIGEGLDQALPDLTELILTNNSLVELGD  104 (162)
T ss_dssp             SEEECCSSCCCEECC-CC--CCSSCCEEEC-CSS--CCCEECSCHHHHCTTCCEEECCSCCCCCGGG
T ss_pred             CEEECCCCCCCccCC-cc--cCcchhhhhc-ccc--cccCCCccccccccccccceecccccccccc
Confidence            478888888888753 21  1333233888 777  788887765 4677888888887 6666665

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00021  Score=48.82  Aligned_cols=51  Identities=8%  Similarity=0.116  Sum_probs=43.0

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY   89 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~   89 (109)
                      .++..++++|+++|..+    .++...+|+ |.|  +|+.+|.. +..+..|+.|++++
T Consensus        11 ~~i~c~~~~l~~iP~~l----~~~l~~L~L-s~n--~i~~l~~~~f~~l~~L~~L~ls~   62 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDL----PRNAIELRF-VLT--KLRVIQKGAFSGFGDLEKIEISQ   62 (242)
T ss_dssp             SEEEEESCSCSSCCSCS----CSCCSEEEE-ESC--CCCEECTTTTTTCTTCCEEEEES
T ss_pred             CEEEEeCCCCCCcCCCC----CCCCCEEEC-cCC--cCCccChhHhhccchhhhhhhcc
Confidence            36788899999999877    234556999 888  99999984 78899999999998

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.15  E-value=0.00021  Score=50.73  Aligned_cols=63  Identities=10%  Similarity=0.046  Sum_probs=48.4

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhh
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRK  103 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K  103 (109)
                      -+|.++++++++++. +  ..|. .++ +|| |.|  +|+++|+ ++.+..|+.|++++ .+..+|+ ++.+++
T Consensus        47 ~~L~l~~~~I~~l~g-l--~~L~-nL~~L~L-s~N--~l~~l~~-l~~L~~L~~L~L~~n~i~~i~~-l~~l~~  111 (384)
T d2omza2          47 TTLQADRLGIKSIDG-V--EYLN-NLTQINF-SNN--QLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTN  111 (384)
T ss_dssp             CEEECCSSCCCCCTT-G--GGCT-TCCEEEC-CSS--CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTT
T ss_pred             CEEECCCCCCCCccc-c--ccCC-CCCEEeC-cCC--cCCCCcc-ccCCcccccccccccccccccc-cccccc
Confidence            468999999998852 2  1244 455 999 999  9999986 89999999999999 7777775 444444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.95  E-value=0.00037  Score=47.88  Aligned_cols=64  Identities=11%  Similarity=-0.003  Sum_probs=47.7

Q ss_pred             hceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhh
Q psy18121         31 SGELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRK  103 (109)
Q Consensus        31 TGvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K  103 (109)
                      --.|.++++++.+++. +  ..+. .++ +|+ |.|  +++++|+ ++.+..|+.|++++ ++..+|+ ++.+++
T Consensus       153 L~~L~l~~n~~~~~~~-l--~~l~-~L~~L~L-s~n--~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~  218 (227)
T d1h6ua2         153 LQYLSIGNAQVSDLTP-L--ANLS-KLTTLKA-DDN--KISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSN  218 (227)
T ss_dssp             CCEEECCSSCCCCCGG-G--TTCT-TCCEEEC-CSS--CCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTT
T ss_pred             cccccccccccccchh-h--cccc-cceeccc-CCC--ccCCChh-hcCCCCCCEEECcCCcCCCCcc-cccCCC
Confidence            3578888888887765 3  2244 355 999 888  9999876 78999999999999 8888875 344433

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.95  E-value=0.00036  Score=49.51  Aligned_cols=71  Identities=10%  Similarity=0.008  Sum_probs=50.5

Q ss_pred             HHHhhhhceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhh
Q psy18121         25 LEEAHLSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRK  103 (109)
Q Consensus        25 LE~A~kTGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K  103 (109)
                      ++....--.|.|+++++.++|. +  ..+..--++|+ +.|  +|+.+| .++.+..|+.|++++ .+..+|. ++.+.+
T Consensus       303 ~~~~~~l~~L~ls~n~l~~l~~-l--~~l~~L~~L~L-~~n--~l~~l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~  374 (384)
T d2omza2         303 ISNLKNLTYLTLYFNNISDISP-V--SSLTKLQRLFF-ANN--KVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTR  374 (384)
T ss_dssp             GGGCTTCSEEECCSSCCSCCGG-G--GGCTTCCEEEC-CSS--CCCCCG-GGGGCTTCCEEECCSSCCCBCGG-GTTCTT
T ss_pred             cchhcccCeEECCCCCCCCCcc-c--ccCCCCCEEEC-CCC--CCCCCh-hHcCCCCCCEEECCCCcCCCChh-hccCCC
Confidence            3444445678899999998874 3  22443333999 888  899987 588899999999998 8887775 444443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.93  E-value=0.00049  Score=46.85  Aligned_cols=64  Identities=9%  Similarity=0.025  Sum_probs=48.1

Q ss_pred             ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhh
Q psy18121         32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRK  103 (109)
Q Consensus        32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K  103 (109)
                      -.|.++++++++++. +  ..+..-..+|+ |.|  +++++|+ ++.+..|+.|++++ ....+|. ++.+.+
T Consensus        43 ~~L~l~~~~i~~l~~-l--~~l~nL~~L~L-s~N--~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~-l~~l~~  107 (199)
T d2omxa2          43 TTLQADRLGIKSIDG-V--EYLNNLTQINF-SNN--QLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTN  107 (199)
T ss_dssp             CEEECTTSCCCCCTT-G--GGCTTCCEEEC-CSS--CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTT
T ss_pred             CEEECCCCCCCCccc-c--ccCCCcCcCcc-ccc--cccCccc-ccCCcccccccccccccccccc-cccccc
Confidence            469999999999864 2  22444344999 888  9999987 88999999999999 7777775 444443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.84  E-value=0.00055  Score=46.60  Aligned_cols=68  Identities=10%  Similarity=0.080  Sum_probs=49.5

Q ss_pred             hhceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhhhh
Q psy18121         30 LSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRKAQ  105 (109)
Q Consensus        30 kTGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K~~  105 (109)
                      +=..|.++++++..+|. +  ..+.....+|+ +.|  +++++|+ ++.+..|++|++++ .+..+| .++.+++-+
T Consensus       129 ~L~~L~l~~n~l~~~~~-l--~~~~~L~~L~l-~~n--~l~~l~~-l~~l~~L~~L~ls~N~i~~i~-~l~~L~~L~  197 (199)
T d2omxa2         129 NLNRLELSSNTISDISA-L--SGLTSLQQLNF-SSN--QVTDLKP-LANLTTLERLDISSNKVSDIS-VLAKLTNLE  197 (199)
T ss_dssp             TCSEEECCSSCCCCCGG-G--TTCTTCSEEEC-CSS--CCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGGGCTTCS
T ss_pred             hhHHhhhhhhhhccccc-c--ccccccccccc-ccc--cccCCcc-ccCCCCCCEEECCCCCCCCCc-cccCCCCCC
Confidence            34688899999988774 3  12333344999 778  9999985 78999999999999 777766 355555433

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=96.83  E-value=0.00011  Score=51.22  Aligned_cols=44  Identities=7%  Similarity=-0.011  Sum_probs=25.7

Q ss_pred             EEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhhhh
Q psy18121         58 IVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRKAQ  105 (109)
Q Consensus        58 rlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K~~  105 (109)
                      .+|| |.|  +|+++| .++.+..|++|++++ .+..+|+....+.+-+
T Consensus        52 ~L~L-s~n--~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~   96 (198)
T d1m9la_          52 HLAL-STN--NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLE   96 (198)
T ss_dssp             EEEC-SEE--EESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCC
T ss_pred             eeEC-ccc--CCCCcc-cccCCccccChhhccccccccccccccccccc
Confidence            3666 656  666665 356666666666666 5666665555444333

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.82  E-value=0.00064  Score=46.76  Aligned_cols=63  Identities=10%  Similarity=0.022  Sum_probs=43.0

Q ss_pred             eeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhh
Q psy18121         33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRK  103 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K  103 (109)
                      .|.+++++++.++. +  ..+..-..+|+ +.|  +|+++|+ ++.+..|+.|++++ ++..+|+ ++-+.+
T Consensus        50 ~L~l~~~~i~~l~~-l--~~l~~L~~L~L-~~n--~i~~l~~-~~~l~~L~~L~l~~n~i~~l~~-l~~l~~  113 (210)
T d1h6ta2          50 QIIANNSDIKSVQG-I--QYLPNVTKLFL-NGN--KLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKK  113 (210)
T ss_dssp             EEECTTSCCCCCTT-G--GGCTTCCEEEC-CSS--CCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTT
T ss_pred             EEECcCCCCCCchh-H--hhCCCCCEEeC-CCc--cccCccc-cccCcccccccccccccccccc-cccccc
Confidence            47888888888764 3  22444344888 777  8888875 57788888888887 7777764 333443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00073  Score=46.05  Aligned_cols=60  Identities=12%  Similarity=0.075  Sum_probs=41.1

Q ss_pred             eeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccc-cccccccceEEecc-eeeccCch
Q psy18121         33 ELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYPGL   97 (109)
Q Consensus        33 vL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P~~   97 (109)
                      .|.++++++.++|..+  +......+ .++ +.|  .++++|+. +..+..|+.|++++ ++.++|..
T Consensus       157 ~L~l~~n~l~~i~~~~--~~~~~l~~~~~l-~~n--~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~  219 (242)
T d1xwdc1         157 ILWLNKNGIQEIHNCA--FNGTQLDELNLS-DNN--NLEELPNDVFHGASGPVILDISRTRIHSLPSY  219 (242)
T ss_dssp             EEECCSSCCCEECTTT--TTTCCEEEEECT-TCT--TCCCCCTTTTTTSCCCSEEECTTSCCCCCCSS
T ss_pred             eeeccccccccccccc--ccchhhhccccc-ccc--ccccccHHHhcCCCCCCEEECCCCcCCccCHH
Confidence            4667777777777766  44555555 445 555  78888775 46778888888877 77777653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.00074  Score=47.65  Aligned_cols=10  Identities=0%  Similarity=-0.217  Sum_probs=3.7

Q ss_pred             cccceEEecc
Q psy18121         80 DLSDSVIVVY   89 (109)
Q Consensus        80 ~~LksL~~~~   89 (109)
                      ..|++|++++
T Consensus       153 ~~L~~L~l~~  162 (284)
T d1ozna_         153 GNLTHLFLHG  162 (284)
T ss_dssp             TTCCEEECCS
T ss_pred             cchhhccccc
Confidence            3333333333

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.52  E-value=0.0012  Score=45.16  Aligned_cols=51  Identities=16%  Similarity=0.108  Sum_probs=42.1

Q ss_pred             hceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecc
Q psy18121         31 SGELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY   89 (109)
Q Consensus        31 TGvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~   89 (109)
                      =..|.|++++++++|. +  ..+. .++ +|+ |.|  +++++|+ ++.+..|+.|.+++
T Consensus       175 L~~L~Ls~n~l~~l~~-l--~~l~-~L~~L~L-s~N--~lt~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         175 LTTLKADDNKISDISP-L--ASLP-NLIEVHL-KNN--QISDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             CCEEECCSSCCCCCGG-G--GGCT-TCCEEEC-TTS--CCCBCGG-GTTCTTCCEEEEEE
T ss_pred             ceecccCCCccCCChh-h--cCCC-CCCEEEC-cCC--cCCCCcc-cccCCCCCEEEeeC
Confidence            3789999999999986 3  2244 355 999 999  9999996 88999999999986

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=96.37  E-value=0.00014  Score=50.67  Aligned_cols=61  Identities=15%  Similarity=0.189  Sum_probs=38.6

Q ss_pred             hhhceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccC
Q psy18121         29 HLSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYP   95 (109)
Q Consensus        29 ~kTGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P   95 (109)
                      ..=-.|.|++++++++|. +  ..+..--.+|+ |.|  +|+++|..++.+..|+.|++++ .+..+|
T Consensus        48 ~~L~~L~Ls~n~I~~i~~-l--~~l~~L~~L~L-s~N--~i~~i~~~~~~~~~L~~L~l~~N~i~~l~  109 (198)
T d1m9la_          48 KACKHLALSTNNIEKISS-L--SGMENLRILSL-GRN--LIKKIENLDAVADTLEELWISYNQIASLS  109 (198)
T ss_dssp             TTCCEEECSEEEESCCCC-H--HHHTTCCEEEC-CEE--EECSCSSHHHHHHHCCEEECSEEECCCHH
T ss_pred             cccceeECcccCCCCccc-c--cCCccccChhh-ccc--ccccccccccccccccccccccccccccc
Confidence            334567777777777753 3  22433233777 666  7777777666666777777777 555554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.37  E-value=0.002  Score=44.20  Aligned_cols=64  Identities=20%  Similarity=0.131  Sum_probs=49.1

Q ss_pred             HHhhhhceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCc
Q psy18121         26 EEAHLSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPG   96 (109)
Q Consensus        26 E~A~kTGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~   96 (109)
                      +....=.+|.|+++++.++|...   .+..-..+|+ +.|  +++++| .++.+..|+.|.+++ ....+|+
T Consensus        65 ~~l~~L~~L~L~~n~i~~l~~~~---~l~~L~~L~l-~~n--~i~~l~-~l~~l~~L~~L~l~~~~~~~~~~  129 (210)
T d1h6ta2          65 QYLPNVTKLFLNGNKLTDIKPLA---NLKNLGWLFL-DEN--KVKDLS-SLKDLKKLKSLSLEHNGISDING  129 (210)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGT---TCTTCCEEEC-CSS--CCCCGG-GGTTCTTCCEEECTTSCCCCCGG
T ss_pred             hhCCCCCEEeCCCccccCccccc---cCcccccccc-ccc--cccccc-ccccccccccccccccccccccc
Confidence            44445578999999999998632   2544344999 888  999999 488999999999999 5555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.23  E-value=0.0025  Score=42.72  Aligned_cols=68  Identities=18%  Similarity=0.002  Sum_probs=44.2

Q ss_pred             HHHHHHHhhhhceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCcccccccccc-ccccccccceEEecc-ee
Q psy18121         21 LERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FN   91 (109)
Q Consensus        21 lerhLE~A~kTGvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l   91 (109)
                      +....+.-..=-+|.|+++++..++.-.....-...++ +|| |.|  +++++|+ ...++..|+.|++++ .+
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~L-s~N--~i~~l~~l~~l~~~~L~~L~L~~Npl  127 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNL-SGN--ELKSERELDKIKGLKLEELWLDGNSL  127 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCC-TTS--CCCCGGGHHHHTTCCCSSCCCTTSTT
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCccccccc-ccC--ccccchhhhhhhccccceeecCCCCc
Confidence            33333333445678999999998864321111123466 999 888  9999987 223456789999998 44

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.46  E-value=0.008  Score=40.09  Aligned_cols=39  Identities=10%  Similarity=-0.068  Sum_probs=32.6

Q ss_pred             cEE-EeeecCccccccccccc---cccccccceEEecc-eeeccCch
Q psy18121         56 SVI-VVYFSRSGRKLKDFPNS---GGKYDLSDSVIVVY-FNITYPGL   97 (109)
Q Consensus        56 tlr-lDL~S~N~~rl~elP~~---I~~F~~LksL~~~~-~l~~~P~~   97 (109)
                      .++ +|| |.|  +|+.++..   +..+..|+.|++++ .+.++++.
T Consensus        66 ~L~~L~L-s~N--~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l  109 (162)
T d1koha1          66 ELLSLNL-SNN--RLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL  109 (162)
T ss_dssp             TCCCCCC-CSS--CCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGH
T ss_pred             CCCEeeC-CCc--cccCCchhHHHHhhCCcccccccccCccccchhh
Confidence            466 999 999  99988653   56889999999999 88888873