Psyllid ID: psy1863

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-----
Protein Sequence
MERPEEKFERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLTVLQYT
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHcccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHHHHHHHHHccccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHcHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MERPEEKFERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEqfghadshnielTFSNINRKKNARAVRNDALSQLHREMKHEAEKCILTSAkliapsiednfsngynWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEActadtynsaaFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEItgdveqasDVNENLLLEAVRNDALSQLHREMKHEAEKCILTSAkliapsiednfsngynWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSefqylptsevpiYLENLLTVLQYT
Flexible Loop (DISEMBL)
MERPEEKFERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEqfghadshnieltfsninrkknaRAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLTVLQYT
Low Complexity Region (SEG)
MERPEEKFERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLTVLQYT
Disordered region (IsUnstruct)
*************EIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNI************************AEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLTVLQ**
Disordered Region (DISOPRED)
*ERPEEKFERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLTV*Q**
Disordered Region (DISEMBL)
**********MEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLTVLQYT
Disordered Region (DISPRO)
**RPEEKFERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLTVLQYT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MERPEEKFERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLTVLQYT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	425	2.2.26 [Sep-21-2011]
Q61371	824	Intraflagellar transport	yes	N/A	0.750	0.387	0.390	3e-53
Q13099	833	Intraflagellar transport	yes	N/A	0.494	0.252	0.495	6e-53
O67178	761	Uncharacterized protein a	no	N/A	0.247	0.137	0.247	6e-05
P49525	179	Photosystem I assembly pr	N/A	N/A	0.303	0.720	0.297	6e-05
Q03560	1150	TPR repeat-containing pro	no	N/A	0.261	0.096	0.269	0.0001
Q96301	914	Probable UDP-N-acetylgluc	yes	N/A	0.418	0.194	0.244	0.0002
O77033	1390	General transcriptional c	yes	N/A	0.192	0.058	0.25	0.0003
O60184	1102	General transcriptional c	yes	N/A	0.2	0.077	0.270	0.0003
P19737	387	TPR repeat-containing pro	no	N/A	0.287	0.315	0.28	0.0005
Q8RVB2	931	Probable UDP-N-acetylgluc	N/A	N/A	0.392	0.179	0.247	0.0006

>sp|Q61371|IFT88_MOUSE Intraflagellar transport protein 88 homolog OS=Mus musculus GN=Ift88 PE=1 SV=2

 Score =  209 bits (532), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 133/341 (39%), Positives = 192/341 (56%), Gaps = 22/341 (6%)

Query: 78  AVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDL 137
           A++ND L Q+ RE K  AEK I+T+AKLIAP IE +F+ GYNWCV+ ++ S +  LA DL
Sbjct: 358 AIKNDHLRQMERERKAMAEKYIMTAAKLIAPVIEASFAVGYNWCVEVVKASQYVELANDL 417

Query: 138 EINKAVTFLRMNDVSQAVDVLKSCDE----MTSSAATNLSFIYFLQGEVEQAEKMAEEAC 193
           EINKA+T+LR  D +QAVD LK  ++    + S+AATNLSF+Y+L+ E  QA   A+ A 
Sbjct: 418 EINKAITYLRQKDFNQAVDTLKMFEKKDSRVKSAAATNLSFLYYLENEFAQASSYADLAV 477

Query: 194 TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDS 253
            +D YN +A  N GN   A  DY K  E Y  AL ND++C EALYN+GL +K LN   ++
Sbjct: 478 NSDRYNPSALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEA 537

Query: 254 LECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLL-LEAVRNDALSQLHREMK 312
           L+ F KL AI+ +  +VL QIA++YE+  D  QA +    L+ +    + ALS+L     
Sbjct: 538 LDSFLKLHAILRNSAQVLCQIANIYELMEDPNQAIEWLMQLISVVPTDSQALSKLGELYD 597

Query: 313 HEAEKC-----ILTSAKLIAPSIE-----DNFSNGYNWCVQSIRNSAHSSLAQDLEINK- 361
            E +K         S +    +IE       +     +C ++I+    +SL Q  ++   
Sbjct: 598 SEGDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIQYFERASLIQPTQVKWQ 657

Query: 362 ---AVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLV 399
              A  F R  +  +A+D  K   E+      N+  + FLV
Sbjct: 658 LMVASCFRRSGNYQKALDTYK---EIHRKFPENVECLRFLV 695

Involved in primary cilium biogenesis.
Mus musculus (taxid: 10090)

>sp|Q13099|IFT88_HUMAN Intraflagellar transport protein 88 homolog OS=Homo sapiens GN=IFT88 PE=2 SV=2

 Score =  208 bits (530), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 106/214 (49%), Positives = 145/214 (67%), Gaps = 4/214 (1%)

Query: 78  AVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDL 137
           A++ND L Q+ RE K  AEK I+TSAKLIAP IE +F+ GY+WCV+ ++ S +  LA DL
Sbjct: 367 AIKNDHLRQMERERKAMAEKYIMTSAKLIAPVIETSFAAGYDWCVEVVKASQYVELANDL 426

Query: 138 EINKAVTFLRMNDVSQAVDVLKSCDE----MTSSAATNLSFIYFLQGEVEQAEKMAEEAC 193
           EINKAVT+LR  D +QAV++LK  ++    + S+AATNLS +Y++  +  QA   A+ A 
Sbjct: 427 EINKAVTYLRQKDYNQAVEILKVLEKKDSRVKSAAATNLSALYYMGKDFAQASSYADIAV 486

Query: 194 TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDS 253
            +D YN AA  N GN   A  DY K  E Y  AL ND++C EALYN+GL ++ LN   ++
Sbjct: 487 NSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEA 546

Query: 254 LECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
           L+CF KL AI+ +  EVLYQIA++YE+  +  QA
Sbjct: 547 LDCFLKLHAILRNSAEVLYQIANIYELMENPSQA 580

Involved in primary cilium biogenesis.

Homo sapiens (taxid: 9606)

>sp|O67178|Y1088_AQUAE Uncharacterized protein aq_1088 OS=Aquifex aeolicus (strain VF5) GN=aq_1088 PE=3 SV=1

 Score = 49.3 bits (116), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 50/105 (47%)

Query: 165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYV 224
           ++   ++L  +YF  G VE AE++ ++A      + A +  LG    ++    + +  + 
Sbjct: 68  SAQGLSDLGLLYFFLGRVEDAERVLKKALKFSDVDDALYARLGALYYSQGKLEEAQHYWE 127

Query: 225 HALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPE 269
            AL  +   +E LYNLG+ H +  E   +L+ F +   + P   E
Sbjct: 128 RALSLNPNKVEILYNLGVLHLNKGELEKALDLFERALRLKPDFRE 172

Aquifex aeolicus (strain VF5) (taxid: 224324)

>sp|P49525|YCF3_ODOSI Photosystem I assembly protein ycf3 OS=Odontella sinensis GN=ycf3 PE=3 SV=1

 Score = 49.3 bits (116), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 12/141 (8%)

Query: 207 GNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266
           G  A A E+Y +  +L     D   T    LYN+GL + +   YS +LE +H+   +  +
Sbjct: 43  GKYAEALENYYEALQLEEDPYDRSYT----LYNIGLIYGNNGNYSQALEYYHQALELNSN 98

Query: 267 MPEVLYQIASLYEITG-DVEQASDVNENLLLEAVRNDALSQLHREMKHEAEKCILTSAKL 325
           +P+ L  IA +Y   G +  Q  + ++NL    +RND   +L +E   +A +    + KL
Sbjct: 99  LPQALNNIAVIYHSQGLNALQMQNQDKNL---EIRNDEYLELAKEFFDKAAEYWRQALKL 155

Query: 326 IAPSIEDNFSNGYNWCVQSIR 346
            AP   DN+    NW   + R
Sbjct: 156 -AP---DNYPGAQNWLKVTGR 172

Seems to be required for the assembly of the photosystem I complex.

Odontella sinensis (taxid: 2839)

>sp|Q03560|YKD1_CAEEL TPR repeat-containing protein B0464.2 OS=Caenorhabditis elegans GN=B0464.2 PE=2 SV=3

 Score = 48.5 bits (114), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 4/115 (3%)

Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACT---ADTYNSAAFVNLGNCAMAREDYVKGKELYV 224
           A  +L+  +F + E+E+A  +A  A T    D+  + AF  +G C  A+  +    + Y 
Sbjct: 285 ALIHLANHFFFKKEIERAWTLAWHAATYNDCDSIKAEAFYQMGRCRHAQGQFDGAYKYYY 344

Query: 225 HALD-NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLY 278
            A   N+     A Y LG  + H NE  ++++CF  +   +P+  + +  + SLY
Sbjct: 345 QARQANNGEHTLAHYGLGQMYIHRNEIEEAIKCFDTVHKRLPNNTDTMKILGSLY 399

Caenorhabditis elegans (taxid: 6239)

>sp|Q96301|SPY_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Arabidopsis thaliana GN=SPY PE=1 SV=1

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 18/196 (9%)

Query: 139 INKAVTFLRMNDVSQAVDVLKSC---DEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA 195
           I K +     N  + A D        D   + A T+   ++  +G + +A +  ++A  A
Sbjct: 81  IGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHCGILHKEEGRLVEAAESYQKALMA 140

Query: 196 D-TYNSAA------FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLN 248
           D +Y  AA        +LG       +  +G + Y  AL  D     A YNLG+ +  + 
Sbjct: 141 DASYKPAAECLAIVLTDLGTSLKLAGNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSEMM 200

Query: 249 EYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLL-----LEAVRND- 302
           +Y ++L C+ K     P   E    +  +Y+  GD+E A    E  L      E  +N+ 
Sbjct: 201 QYDNALSCYEKAALERPMYAEAYCNMGVIYKNRGDLEMAITCYERCLAVSPNFEIAKNNM 260

Query: 303 --ALSQLHREMKHEAE 316
             AL+ L  ++K E +
Sbjct: 261 AIALTDLGTKVKLEGD 276

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway and circadian clock. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Acts as a repressor of GA signaling pathway to inhibit hypocotyl elongation. Functions with GIGANTEA (GI) in pathways controlling flowering, circadian cotyledon movements and hypocotyl elongation. Acts as a light-regulated promoter of elongation via its interaction with GI. Acts as an activator of cytokinin signaling. Required with SEC for gamete and seed development. Its OGT activity has been proved in vitro but not in vivo.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|O77033|CYC8_DICDI General transcriptional corepressor trfA OS=Dictyostelium discoideum GN=trfA PE=2 SV=1

 Score = 47.0 bits (110), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 46/88 (52%)

Query: 192 ACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYS 251
           +  +D+ ++  +  LG C M ++ Y K  + Y  A+  D        ++G+ +  +N+Y 
Sbjct: 412 SIDSDSSDAQTWYLLGRCYMTQQKYKKAYDAYQQAVYRDGRNPTFWCSIGVLYYQINQYR 471

Query: 252 DSLECFHKLQAIVPSMPEVLYQIASLYE 279
           D+L+ + +   + P + EV Y + +LYE
Sbjct: 472 DALDAYTRAIRLNPFLSEVWYDLGTLYE 499

Acts as component of the trfA-tupA corepressor complex which is involved in the repression of many genes in a wide variety of physiological processes. May also be involved in the derepression of at least some target genes. The complex is recruited to target genes by interaction with DNA-bound transcriptional repressors. The complex recruits histone deacetylases to produce a repressive chromatin structure, interacts with hypoacetylated N-terminal tails of histones H3 and H4 that have been programmed for repression by the action of histone deacetylases and interferes directly with the transcriptional machinery by associating with the RNA polymerase II mediator complex (By similarity). Required for normal growth and for aggregation in early development. Required for a proper chemotactic response to cAMP.

Dictyostelium discoideum (taxid: 44689)

>sp|O60184|CYC8_SCHPO General transcriptional corepressor ssn6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssn6 PE=1 SV=1

 Score = 46.6 bits (109), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 46/85 (54%)

Query: 195 ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSL 254
           AD  ++ ++  +G C +A++ Y K  E Y  A+  D        ++G+ +  +N+Y D+L
Sbjct: 579 ADDTDAQSWYLIGRCYVAQQKYNKAYEAYQQAVYRDGRNPTFWCSIGVLYYQINQYQDAL 638

Query: 255 ECFHKLQAIVPSMPEVLYQIASLYE 279
           + + +   + P + EV Y + +LYE
Sbjct: 639 DAYSRAIRLNPYISEVWYDLGTLYE 663

Acts as component of the ssn6-tup corepressor complexes, which are involved in the repression of many genes in a wide variety of physiological processes. May also be involved in the derepression of at least some target genes. The complex is recruited to target genes by interaction with DNA-bound transcriptional repressors. The complex recruits histone deacetylases to produce a repressive chromatin structure, interacts with hypoacetylated N-terminal tails of histones H3 and H4 that have been programmed for repression by the action of histone deacetylases and interferes directly with the transcriptional machinery by associating with the RNA polymerase II mediator complex.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P19737|Y425_SYNP2 TPR repeat-containing protein SYNPCC7002_A0425 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=SYNPCC7002_A0425 PE=4 SV=2

 Score = 46.2 bits (108), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 3/125 (2%)

Query: 136 DLEINKAVTFLRMNDVSQAVDVLKSCDEMT---SSAATNLSFIYFLQGEVEQAEKMAEEA 192
           +L I  AVT+  +ND  QA+  L+    ++   S+    +  IY  Q  + QA    E+A
Sbjct: 234 ELRIKAAVTWFGLNDRDQAIAFLEEARRLSTRDSAMQIRVGKIYETQNLLPQAIAAYEQA 293

Query: 193 CTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSD 252
              D  +  AF   G+ AM  EDY+     Y    +   T   A YN  +A +      +
Sbjct: 294 SFVDPQSREAFALYGSAAMKTEDYINAIIAYRALTELSPTDPAAFYNFAVALQGRRRSRE 353

Query: 253 SLECF 257
           +LE  
Sbjct: 354 ALEAL 358

Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (taxid: 32049)

>sp|Q8RVB2|SPY_SOLLC Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Solanum lycopersicum GN=SPY PE=2 SV=1

 Score = 45.8 bits (107), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 19/186 (10%)

Query: 146 LRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD-TYNSAA-- 202
           L     S+A+ V    D   + A T+   +Y  +G + +A +  E+A  AD +Y  AA  
Sbjct: 100 LAFESFSEAIKV----DPQNACALTHCGILYKDEGRLVEAAESYEKALKADPSYTPAAEC 155

Query: 203 ----FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFH 258
                 ++G       +  +G + Y  A+  D+    A YNLG+ +  + +Y  +L C+ 
Sbjct: 156 LAIVLTDIGTSLKLAGNTQEGIQKYYEAIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYE 215

Query: 259 KLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLL-----LEAVRND---ALSQLHRE 310
           K     P   E    +  +++  GD+E A    E  L      E  +N+   AL+ L  +
Sbjct: 216 KAALERPMYAEAYCNMGVIFKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275

Query: 311 MKHEAE 316
           +K E +
Sbjct: 276 VKLEGD 281

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	425
256075180	704	tetratricopeptide repeat protein 10 tpr1	0.670	0.404	0.439	6e-62
321451357	802	hypothetical protein DAPPUDRAFT_308631 [	0.494	0.261	0.542	4e-59
260823344	819	hypothetical protein BRAFLDRAFT_208090 [	0.496	0.257	0.5	2e-55
432931295	840	PREDICTED: LOW QUALITY PROTEIN: intrafla	0.494	0.25	0.5	1e-54
380011006	794	PREDICTED: LOW QUALITY PROTEIN: intrafla	0.571	0.306	0.466	2e-54
77021665	824	polaris [Danio rerio]	0.494	0.254	0.504	2e-54
190338004	824	Intraflagellar transport 88 homolog [Dan	0.494	0.254	0.504	2e-54
291190309	845	intraflagellar transport protein 88 homo	0.494	0.248	0.5	2e-54
51783969	824	intraflagellar transport protein 88 homo	0.494	0.254	0.504	2e-54
348538306	824	PREDICTED: intraflagellar transport prot	0.494	0.254	0.490	3e-54

>gi|256075180|ref|XP_002573898.1| tetratricopeptide repeat protein 10 tpr10 [Schistosoma mansoni]

 Score =  244 bits (623), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 130/296 (43%), Positives = 189/296 (63%), Gaps = 11/296 (3%)

Query: 5   EEKFERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIE 64
           EE+ + ME+ +  L++ESC+ A   +   ALEKAK AS KERVL + +EQ G AD  N++
Sbjct: 139 EERIKNMEKRVNHLVEESCVAACQGEITLALEKAKEASRKERVLARQREQLGVADQINLD 198

Query: 65  LTFS---NINRKKNARAVRNDALSQ----LHREMKHEAEKCILTSAKLIAPSIEDNFSNG 117
           LT+S   N+  +  A  +  +AL+     +  +MK +AE  I  +AK+IAP IE NFS G
Sbjct: 199 LTYSVLFNLANRYTANGMYQEALNTYQTIVRNKMKVQAENFIKMAAKIIAPVIESNFSTG 258

Query: 118 YNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTS----SAATNLS 173
           Y+WC+  ++ S++  +A DLEI+KAV FL+  D  QA+D LKS +   +    SAATNLS
Sbjct: 259 YDWCIDHVKMSSYHEIAHDLEIDKAVMFLKQRDFHQAIDTLKSFERKDTRVACSAATNLS 318

Query: 174 FIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC 233
           F+YFL+G++ QAEK A++A + D YN AA VN GN    ++ Y + ++ Y  AL +D  C
Sbjct: 319 FLYFLEGDLLQAEKYADQALSVDRYNPAALVNKGNVLYQQQQYERARDCYAEALQDDTRC 378

Query: 234 IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASD 289
           +EALYNLGL  K L  Y ++LE F KL +++ +   V+YQ+  +YE  GD  QA +
Sbjct: 379 VEALYNLGLVCKQLERYEEALEAFFKLYSVLRNSAPVVYQLMDIYEKLGDSTQAQE 434

Source: Schistosoma mansoni

Species: Schistosoma mansoni

Genus: Schistosoma

Family: Schistosomatidae

Order: Strigeidida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|321451357|gb|EFX63038.1| hypothetical protein DAPPUDRAFT_308631 [Daphnia pulex]

 Score =  234 bits (598), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 116/214 (54%), Positives = 154/214 (71%), Gaps = 4/214 (1%)

Query: 78  AVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDL 137
           A+ ND+L +L R+ K E E+CIL +AKLI+P IED FS GY WCV++I+ S H+ LA DL
Sbjct: 344 ALNNDSLHRLERQAKFEGERCILMAAKLISPVIEDTFSVGYQWCVEAIKESTHNHLADDL 403

Query: 138 EINKAVTFLRMNDVSQAVDVLKSCDE----MTSSAATNLSFIYFLQGEVEQAEKMAEEAC 193
           EINKAV FLR  DV+ A + L+S ++    M ++AA NLS IY+LQG++  AEK AE A 
Sbjct: 404 EINKAVLFLRQKDVALATETLRSFEKRSSRMATNAAVNLSTIYYLQGDIASAEKYAEVAR 463

Query: 194 TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDS 253
            +D YN+AAFV LGNC++ R DY K ++ ++ ALDNDA C+EALYNLGL ++  N+   S
Sbjct: 464 DSDPYNAAAFVCLGNCSLRRADYNKARDFFLFALDNDAACVEALYNLGLTYRSTNQLEKS 523

Query: 254 LECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
           LE F KLQ ++   PEVL+Q+ASL E  G+ EQA
Sbjct: 524 LEQFVKLQMVLRHQPEVLFQVASLNEELGNDEQA 557

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260823344|ref|XP_002604143.1| hypothetical protein BRAFLDRAFT_208090 [Branchiostoma floridae] gi|229289468|gb|EEN60154.1| hypothetical protein BRAFLDRAFT_208090 [Branchiostoma floridae]

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 108/216 (50%), Positives = 153/216 (70%), Gaps = 5/216 (2%)

Query: 79  VRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNS-AHSSLAQDL 137
           +RND L Q+ RE K  AEKCI+ +AK+IAP+IE +F+ GY+WCV+ ++ S +   +A DL
Sbjct: 359 IRNDTLRQMEREKKTYAEKCIMAAAKVIAPAIESSFAAGYDWCVEQVKTSPSFLEMANDL 418

Query: 138 EINKAVTFLRMNDVSQAVDVLKSCDE----MTSSAATNLSFIYFLQGEVEQAEKMAEEAC 193
           EINKA+ +L+  D +QAV+ LKS ++    + S+AATNLSF+YFL+ E+ QA+K AE A 
Sbjct: 419 EINKAIMYLKQKDFNQAVETLKSFEKKDSKVASTAATNLSFLYFLENEIGQADKYAEVAM 478

Query: 194 TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDS 253
           TAD YN +A VN GNC   + ++ + +E Y  AL ND+TC EALYNLGL +K +    DS
Sbjct: 479 TADRYNPSALVNKGNCVFMQGEHERAREFYQEALRNDSTCTEALYNLGLTYKKIGRLEDS 538

Query: 254 LECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASD 289
           L+CF KL AI+ +  +V+YQIA LY++  D  QA++
Sbjct: 539 LDCFLKLHAILRNSAQVIYQIADLYDLLEDTAQATE 574

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432931295|ref|XP_004081644.1| PREDICTED: LOW QUALITY PROTEIN: intraflagellar transport protein 88 homolog [Oryzias latipes]

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 107/214 (50%), Positives = 152/214 (71%), Gaps = 4/214 (1%)

Query: 78  AVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDL 137
           A++ND L Q+ R+ K +AEK I+T+AKLIAP+IE +F++G++WCV  ++ S +  LA DL
Sbjct: 357 AIKNDKLYQMERDKKAQAEKYIMTAAKLIAPAIETSFASGFDWCVDMVKASQYVELANDL 416

Query: 138 EINKAVTFLRMNDVSQAVDVLKSCDE----MTSSAATNLSFIYFLQGEVEQAEKMAEEAC 193
           EINKA+T+LR  D +QAV+ LK+ ++    + S AATNLSFIYFL+ + +QA++ A+ A 
Sbjct: 417 EINKAITYLRQKDFNQAVETLKTFEKKDSRVKSVAATNLSFIYFLEKDYDQADRYADLAM 476

Query: 194 TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDS 253
            A+ YN AA VN GN    ++DY K  E +  AL ND++C E LYNLGL +K LN   D+
Sbjct: 477 NANRYNPAALVNKGNTVFVKQDYEKAAEFFKEALKNDSSCTEGLYNLGLTYKRLNRLEDA 536

Query: 254 LECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
           L+CF KL AI+ +  +V+ QIA LYE  GD++QA
Sbjct: 537 LDCFLKLNAILRNSDQVMCQIADLYEQLGDLQQA 570

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|380011006|ref|XP_003689605.1| PREDICTED: LOW QUALITY PROTEIN: intraflagellar transport protein 88 homolog [Apis florea]

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 119/255 (46%), Positives = 168/255 (65%), Gaps = 12/255 (4%)

Query: 48  LIKLQEQFGHADSHNI---ELTFSNINRKKNARAVRNDALSQLHREMKHEAEKCILTSAK 104
           L+++Q      D +NI   ++ F+ +N       ++ND LS+L +E+K EAE+ IL +AK
Sbjct: 319 LLEVQLNIDQEDRYNISTDDVAFNILNE-----XLKNDDLSKLEKELKSEAERTILCAAK 373

Query: 105 LIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD-- 162
           LIAP IED  + G+ WCV +I++SA+  LA DLEINKA+ FL   D   A+D LK  +  
Sbjct: 374 LIAPVIEDTLTAGFAWCVDTIKSSAYGLLAADLEINKAMVFLHNRDTQLAIDTLKIFENR 433

Query: 163 --EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGK 220
             +  SSAAT LSFIYFLQG+ +QAEK  E A  AD+YN+AA+VNL  CA+ + +    +
Sbjct: 434 ESKANSSAATMLSFIYFLQGDFDQAEKCGEIARNADSYNAAAYVNLSACAIKKGELNIAR 493

Query: 221 ELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI 280
           EL + ALD DA+ I+ALYNLGL +K  N Y ++LECF K++ IV   P+ +YQI  LY++
Sbjct: 494 ELLLCALDTDASHIQALYNLGLVYKKQNMYEEALECFWKVRNIVRHDPQTVYQIGQLYQL 553

Query: 281 TGDVEQASDVNENLL 295
             D++QA+D    LL
Sbjct: 554 MDDIDQATDWYNQLL 568

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|77021665|gb|ABA60691.1| polaris [Danio rerio]

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 108/214 (50%), Positives = 150/214 (70%), Gaps = 4/214 (1%)

Query: 78  AVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDL 137
           A++ND L Q+ RE K  AEK I+TSAKLIAP+IE +F+ G++WCV  ++ S +  LA DL
Sbjct: 359 AIKNDKLHQMERERKALAEKYIMTSAKLIAPAIEMSFAAGFDWCVDMVKGSQYVELANDL 418

Query: 138 EINKAVTFLRMNDVSQAVDVLKSCDE----MTSSAATNLSFIYFLQGEVEQAEKMAEEAC 193
           EINKA+T+LR  D  QAV+ LK  ++    + S+AATNLSF+YFL+ + +QA++ AE A 
Sbjct: 419 EINKAITYLRQRDFKQAVETLKMFEKKDSRVKSAAATNLSFLYFLEKDFDQADRYAELAM 478

Query: 194 TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDS 253
           +AD YN AA +N GN    +EDY K  E Y  +L ND++C EALYNLGL +K L    ++
Sbjct: 479 SADRYNPAALINKGNTLFVKEDYEKAAEFYKESLRNDSSCTEALYNLGLTYKRLGRLEEA 538

Query: 254 LECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
           L+CF KL AI+ +  +V+YQ+A+LYE+  D  QA
Sbjct: 539 LDCFLKLHAILRNSAQVMYQLANLYEMLEDPHQA 572

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|190338004|gb|AAI62512.1| Intraflagellar transport 88 homolog [Danio rerio]

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 108/214 (50%), Positives = 150/214 (70%), Gaps = 4/214 (1%)

Query: 78  AVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDL 137
           A++ND L Q+ RE K  AEK I+TSAKLIAP+IE +F+ G++WCV  ++ S +  LA DL
Sbjct: 359 AIKNDKLHQMERERKALAEKYIMTSAKLIAPAIEMSFAAGFDWCVDMVKGSQYVELANDL 418

Query: 138 EINKAVTFLRMNDVSQAVDVLKSCDE----MTSSAATNLSFIYFLQGEVEQAEKMAEEAC 193
           EINKA+T+LR  D  QAV+ LK  ++    + S+AATNLSF+YFL+ + +QA++ AE A 
Sbjct: 419 EINKAITYLRQRDFKQAVETLKMFEKKDSRVKSAAATNLSFLYFLEKDFDQADRYAELAM 478

Query: 194 TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDS 253
           +AD YN AA +N GN    +EDY K  E Y  +L ND++C EALYNLGL +K L    ++
Sbjct: 479 SADRYNPAALINKGNTLFVKEDYEKAAEFYKESLRNDSSCTEALYNLGLTYKRLGRLEEA 538

Query: 254 LECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
           L+CF KL AI+ +  +V+YQ+A+LYE+  D  QA
Sbjct: 539 LDCFLKLHAILRNSAQVMYQLANLYEMLEDPHQA 572

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291190309|ref|NP_001167232.1| intraflagellar transport protein 88 homolog [Salmo salar] gi|223648786|gb|ACN11151.1| Intraflagellar transport protein 88 homolog [Salmo salar]

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 107/214 (50%), Positives = 151/214 (70%), Gaps = 4/214 (1%)

Query: 78  AVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDL 137
           A++ND L Q+ RE K  AEK I+TSAKLIAP+IE  F+ G++WCV  +++S +  LA DL
Sbjct: 357 AIKNDKLHQMERERKALAEKFIMTSAKLIAPAIEATFAAGFDWCVDMVKSSQYVELANDL 416

Query: 138 EINKAVTFLRMNDVSQAVDVLKSCDE----MTSSAATNLSFIYFLQGEVEQAEKMAEEAC 193
           EINKA+T+LR  D  QAV+ LK+ ++    + S+AATNLSF+YFL+ + +QA++ A+ A 
Sbjct: 417 EINKAITYLRQRDFKQAVETLKTFEKKDSRVKSAAATNLSFLYFLEKDYDQADRYADLAM 476

Query: 194 TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDS 253
           TAD YN AA +N GN    ++DY K  E Y  AL ND++C EALYNLGL +K L    +S
Sbjct: 477 TADRYNPAALINKGNTVFVKKDYEKAAEFYKEALRNDSSCTEALYNLGLTYKRLGRLEES 536

Query: 254 LECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
           L+CF KL AI+ +  +V++Q+A+L+E+  D  QA
Sbjct: 537 LDCFLKLHAILRNSAQVMWQLANLFEMLEDPHQA 570

Source: Salmo salar

Species: Salmo salar

Genus: Salmo

Family: Salmonidae

Order: Salmoniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|51783969|ref|NP_001001725.1| intraflagellar transport protein 88 homolog [Danio rerio] gi|45479854|gb|AAS66768.1| Ift88 [Danio rerio]

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 108/214 (50%), Positives = 150/214 (70%), Gaps = 4/214 (1%)

Query: 78  AVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDL 137
           A++ND L Q+ RE K  AEK I+TSAKLIAP+IE +F+ G++WCV  ++ S +  LA DL
Sbjct: 359 AIKNDKLHQMERERKALAEKYIMTSAKLIAPAIEMSFAAGFDWCVDMVKGSQYVELANDL 418

Query: 138 EINKAVTFLRMNDVSQAVDVLKSCDE----MTSSAATNLSFIYFLQGEVEQAEKMAEEAC 193
           EINKA+T+LR  D  QAV+ LK  ++    + S+AATNLSF+YFL+ + +QA++ AE A 
Sbjct: 419 EINKAITYLRQRDFKQAVETLKMFEKKDSRVKSAAATNLSFLYFLEKDFDQADRYAELAM 478

Query: 194 TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDS 253
           +AD YN AA +N GN    +EDY K  E Y  +L ND++C EALYNLGL +K L    ++
Sbjct: 479 SADRYNPAALINKGNTLFVKEDYEKAAEFYKESLRNDSSCTEALYNLGLTYKRLGRLEEA 538

Query: 254 LECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
           L+CF KL AI+ +  +V+YQ+A+LYE+  D  QA
Sbjct: 539 LDCFLKLHAILRNSAQVMYQLANLYEMLEDPHQA 572

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348538306|ref|XP_003456633.1| PREDICTED: intraflagellar transport protein 88 homolog isoform 1 [Oreochromis niloticus]

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 105/214 (49%), Positives = 153/214 (71%), Gaps = 4/214 (1%)

Query: 78  AVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDL 137
           A++ND L Q+ R++K  AEK I+T+AKLIAP+IE  F+ G++WCV  +++S +  LA DL
Sbjct: 357 AIKNDKLHQMERDLKTLAEKYIMTAAKLIAPAIETLFATGFDWCVDMVKSSQYVELANDL 416

Query: 138 EINKAVTFLRMNDVSQAVDVLKSCDE----MTSSAATNLSFIYFLQGEVEQAEKMAEEAC 193
           EINKA+T+LR  D +QAV+ LK+ ++    + S+AATNLSF+YFL+ + +QA++ A+ A 
Sbjct: 417 EINKAITYLRQKDFNQAVETLKAFEKKDSRVKSAAATNLSFLYFLEKDYDQADRYADLAM 476

Query: 194 TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDS 253
            AD YN AA +N GN    +++Y K  E Y  AL ND++C E LYNLGL +K LN   ++
Sbjct: 477 NADRYNPAALINKGNTVFVKQEYEKAAEFYKEALRNDSSCTEGLYNLGLTYKRLNRLEEA 536

Query: 254 LECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
           L+CF KL AI+ +  +V+YQ+ASLYE+  + EQA
Sbjct: 537 LDCFLKLHAILRNSSQVMYQLASLYELLENPEQA 570

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	425
ZFIN|ZDB-GENE-030131-574	855	ift88 "intraflagellar transpor	0.494	0.245	0.504	1.6e-52
UNIPROTKB|E1BLX1	825	IFT88 "Uncharacterized protein	0.748	0.385	0.394	4.3e-52
RGD|1309717	815	Ift88 "intraflagellar transpor	0.748	0.390	0.397	1.4e-51
MGI|MGI:98715	824	Ift88 "intraflagellar transpor	0.748	0.385	0.397	1.6e-51
UNIPROTKB|E1C168	816	IFT88 "Uncharacterized protein	0.562	0.292	0.463	4e-51
UNIPROTKB|Q13099	833	IFT88 "Intraflagellar transpor	0.494	0.252	0.495	1.7e-49
UNIPROTKB|Q9FPW0	782	IFT88 "Intraflagellar transpor	0.552	0.300	0.348	8.1e-42
WB|WBGene00003885	820	osm-5 [Caenorhabditis elegans	0.564	0.292	0.373	2.4e-35
FB|FBgn0016919	852	nompB "no mechanoreceptor pote	0.491	0.245	0.333	2.4e-23
UNIPROTKB|F1RVB0	356	LOC100519382 "Uncharacterized	0.430	0.514	0.277	4.9e-11

ZFIN|ZDB-GENE-030131-574 ift88 "intraflagellar transport 88 homolog" [Danio rerio (taxid:7955)]

 Score = 549 (198.3 bits), Expect = 1.6e-52, P = 1.6e-52
 Identities = 108/214 (50%), Positives = 150/214 (70%)

Query:    78 AVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDL 137
             A++ND L Q+ RE K  AEK I+TSAKLIAP+IE +F+ G++WCV  ++ S +  LA DL
Sbjct:   359 AIKNDKLHQMERERKALAEKYIMTSAKLIAPAIEMSFAAGFDWCVDMVKGSQYVELANDL 418

Query:   138 EINKAVTFLRMNDVSQAVDVLKSCDE----MTSSAATNLSFIYFLQGEVEQAEKMAEEAC 193
             EINKA+T+LR  D  QAV+ LK  ++    + S+AATNLSF+YFL+ + +QA++ AE A 
Sbjct:   419 EINKAITYLRQRDFKQAVETLKMFEKKDSRVKSAAATNLSFLYFLEKDFDQADRYAELAM 478

Query:   194 TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDS 253
             +AD YN AA +N GN    +EDY K  E Y  +L ND++C EALYNLGL +K L    ++
Sbjct:   479 SADRYNPAALINKGNTLFVKEDYEKAAEFYKESLRNDSSCTEALYNLGLTYKRLGRLEEA 538

Query:   254 LECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
             L+CF KL AI+ +  +V+YQ+A+LYE+  D  QA
Sbjct:   539 LDCFLKLHAILRNSAQVMYQLANLYEMLEDPHQA 572

GO:0042462 "eye photoreceptor cell development" evidence=IMP

GO:0045494 "photoreceptor cell maintenance" evidence=IMP

GO:0035058 "nonmotile primary cilium assembly" evidence=IMP

GO:0005932 "microtubule basal body" evidence=IDA

GO:0005930 "axoneme" evidence=IDA

GO:0042384 "cilium assembly" evidence=IMP

GO:0001539 "ciliary or flagellar motility" evidence=IMP

GO:0060271 "cilium morphogenesis" evidence=IMP

GO:0072019 "proximal convoluted tubule development" evidence=IMP

GO:0045880 "positive regulation of smoothened signaling pathway" evidence=IMP

GO:0071482 "cellular response to light stimulus" evidence=IMP

GO:0060785 "regulation of apoptosis involved in tissue homeostasis" evidence=IMP

GO:0007368 "determination of left/right symmetry" evidence=IGI;IMP

GO:0007369 "gastrulation" evidence=IMP

GO:0005929 "cilium" evidence=IDA

GO:0005622 "intracellular" evidence=IMP

GO:0042073 "intraflagellar transport" evidence=IMP

UNIPROTKB|E1BLX1 IFT88 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 544 (196.6 bits), Expect = 4.3e-52, P = 4.3e-52
 Identities = 135/342 (39%), Positives = 194/342 (56%)

Query:    78 AVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDL 137
             A++ND L Q+ RE K  AEK I+T+AKLIAP IE +F+ GY+WCV+ ++ S +  LA DL
Sbjct:   359 AIKNDHLRQMERERKAMAEKYIMTAAKLIAPVIETSFAVGYDWCVEVVKASQYVELANDL 418

Query:   138 EINKAVTFLRMNDVSQAVDVLKSCDE----MTSSAATNLSFIYFLQGEVEQAEKMAEEAC 193
             EINKA+T+LR  D +QAV+ LK  ++    + S+AATNLSF+Y+L+ E  QA   A+ A 
Sbjct:   419 EINKAITYLRQKDFNQAVETLKMFEKKDSRVKSAAATNLSFLYYLENEFAQASSYADLAV 478

Query:   194 TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDS 253
              +D YN +A  N GN   A  DY K  E Y  AL ND +C EALYN+GL +K LN   ++
Sbjct:   479 NSDRYNPSALTNKGNTVFANGDYEKAAEFYKEALRNDCSCTEALYNIGLTYKKLNRLDEA 538

Query:   254 LECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRND--ALSQLHREM 311
             L+CF KL AI+ +  +VLYQIA++YE+  D  QA +    L+   V  D  ALS+L    
Sbjct:   539 LDCFLKLHAILRNSAQVLYQIANVYELMEDPSQAMEWLMQLI-SVVPTDSRALSKLGGLY 597

Query:   312 KHEAEKC-----ILTSAKLIAPSIED-NFSNGY----NWCVQSIRNSAHSSLAQDLEIN- 360
               E +K         S +    +IE   +   Y     +C ++I+    +SL Q  ++  
Sbjct:   598 DSEGDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIQYFERASLIQPTQVKW 657

Query:   361 ---KAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLV 399
                 A  F R  +  +A+D  K   ++      N+  + FLV
Sbjct:   658 QLMVASCFRRSGNYQKALDTYK---DIHRKFPENVECLRFLV 696

GO:0060426 "lung vasculature development" evidence=IEA

GO:0060411 "cardiac septum morphogenesis" evidence=IEA

GO:0060271 "cilium morphogenesis" evidence=IEA

GO:0048853 "forebrain morphogenesis" evidence=IEA

GO:0048568 "embryonic organ development" evidence=IEA

GO:0045862 "positive regulation of proteolysis" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0042733 "embryonic digit morphogenesis" evidence=IEA

GO:0042487 "regulation of odontogenesis of dentin-containing tooth" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0031512 "motile primary cilium" evidence=IEA

GO:0021537 "telencephalon development" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0005814 "centriole" evidence=IEA

GO:0003382 "epithelial cell morphogenesis" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

RGD|1309717 Ift88 "intraflagellar transport 88 homolog (Chlamydomonas)" [Rattus norvegicus (taxid:10116)]

 Score = 539 (194.8 bits), Expect = 1.4e-51, P = 1.4e-51
 Identities = 136/342 (39%), Positives = 194/342 (56%)

Query:    78 AVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDL 137
             A++ND L Q+ RE K  AEK I+T+AKLIAP IE +F+ GYNWCV+ ++ S +  LA DL
Sbjct:   359 AIKNDHLRQMERERKAMAEKYIMTAAKLIAPVIEASFAVGYNWCVEVVKASQYVELANDL 418

Query:   138 EINKAVTFLRMNDVSQAVDVLKSCDE----MTSSAATNLSFIYFLQGEVEQAEKMAEEAC 193
             EINKA+T+LR  D +QAVD LK  ++    + S+AATNLSF+Y+L+ E  QA   A+ A 
Sbjct:   419 EINKAITYLRQKDFNQAVDTLKMFEKKDSRVKSAAATNLSFLYYLENEFAQASSYADLAV 478

Query:   194 TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDS 253
             ++D YN +A  N GN   A  DY K  E Y  AL ND++C EALYN+GL +K LN   ++
Sbjct:   479 SSDRYNPSALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEA 538

Query:   254 LECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRND--ALSQLHREM 311
             L+ F KL AI+ +  +VL QIA++YE+  D  QA +    L+   V  D  ALS+L    
Sbjct:   539 LDSFLKLHAILRNSAQVLCQIANVYELMEDPNQAIEWLMQLI-SVVPTDSQALSKLGELY 597

Query:   312 KHEAEKC-----ILTSAKLIAPSIED-NFSNGY----NWCVQSIRNSAHSSLAQDLEIN- 360
               E +K         S +    +IE   +   Y     +C ++I+    +SL Q  ++  
Sbjct:   598 DSEGDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIQYFERASLIQPTQVKW 657

Query:   361 ---KAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLV 399
                 A  F R  +  +A+D  K   E+      N+  + FLV
Sbjct:   658 QLMVASCFRRSGNYQKALDTYK---EIHRKFPENVECLRFLV 696

GO:0001654 "eye development" evidence=ISO

GO:0001701 "in utero embryonic development" evidence=IEA;ISO

GO:0003382 "epithelial cell morphogenesis" evidence=IEA;ISO

GO:0005814 "centriole" evidence=IEA;ISO

GO:0005929 "cilium" evidence=ISO

GO:0005930 "axoneme" evidence=ISO

GO:0005932 "microtubule basal body" evidence=IEA;ISO

GO:0007224 "smoothened signaling pathway" evidence=IEA;ISO

GO:0007368 "determination of left/right symmetry" evidence=IEA;ISO

GO:0007399 "nervous system development" evidence=ISO

GO:0007420 "brain development" evidence=ISO

GO:0007507 "heart development" evidence=ISO

GO:0008104 "protein localization" evidence=ISO

GO:0009887 "organ morphogenesis" evidence=ISO

GO:0009952 "anterior/posterior pattern specification" evidence=IEA;ISO

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA;ISO

GO:0016485 "protein processing" evidence=IEA;ISO

GO:0021513 "spinal cord dorsal/ventral patterning" evidence=ISO

GO:0021537 "telencephalon development" evidence=IEA;ISO

GO:0030324 "lung development" evidence=ISO

GO:0031512 "motile primary cilium" evidence=IEA;ISO

GO:0032391 "photoreceptor connecting cilium" evidence=IEA;ISO

GO:0035085 "cilium axoneme" evidence=IEA;ISO

GO:0042487 "regulation of odontogenesis of dentin-containing tooth" evidence=IEA;ISO

GO:0042733 "embryonic digit morphogenesis" evidence=IEA;ISO

GO:0045177 "apical part of cell" evidence=IEA;ISO

GO:0045862 "positive regulation of proteolysis" evidence=IEA;ISO

GO:0048568 "embryonic organ development" evidence=IEA;ISO

GO:0048598 "embryonic morphogenesis" evidence=ISO

GO:0048853 "forebrain morphogenesis" evidence=IEA;ISO

GO:0060021 "palate development" evidence=ISO

GO:0060173 "limb development" evidence=ISO

GO:0060271 "cilium morphogenesis" evidence=IEA;ISO

GO:0060411 "cardiac septum morphogenesis" evidence=IEA;ISO

GO:0060426 "lung vasculature development" evidence=IEA;ISO

MGI|MGI:98715 Ift88 "intraflagellar transport 88" [Mus musculus (taxid:10090)]

 Score = 539 (194.8 bits), Expect = 1.6e-51, P = 1.6e-51
 Identities = 136/342 (39%), Positives = 193/342 (56%)

Query:    78 AVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDL 137
             A++ND L Q+ RE K  AEK I+T+AKLIAP IE +F+ GYNWCV+ ++ S +  LA DL
Sbjct:   358 AIKNDHLRQMERERKAMAEKYIMTAAKLIAPVIEASFAVGYNWCVEVVKASQYVELANDL 417

Query:   138 EINKAVTFLRMNDVSQAVDVLKSCDE----MTSSAATNLSFIYFLQGEVEQAEKMAEEAC 193
             EINKA+T+LR  D +QAVD LK  ++    + S+AATNLSF+Y+L+ E  QA   A+ A 
Sbjct:   418 EINKAITYLRQKDFNQAVDTLKMFEKKDSRVKSAAATNLSFLYYLENEFAQASSYADLAV 477

Query:   194 TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDS 253
              +D YN +A  N GN   A  DY K  E Y  AL ND++C EALYN+GL +K LN   ++
Sbjct:   478 NSDRYNPSALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEA 537

Query:   254 LECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRND--ALSQLHREM 311
             L+ F KL AI+ +  +VL QIA++YE+  D  QA +    L+   V  D  ALS+L    
Sbjct:   538 LDSFLKLHAILRNSAQVLCQIANIYELMEDPNQAIEWLMQLI-SVVPTDSQALSKLGELY 596

Query:   312 KHEAEKC-----ILTSAKLIAPSIED-NFSNGY----NWCVQSIRNSAHSSLAQDLEIN- 360
               E +K         S +    +IE   +   Y     +C ++I+    +SL Q  ++  
Sbjct:   597 DSEGDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIQYFERASLIQPTQVKW 656

Query:   361 ---KAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLV 399
                 A  F R  +  +A+D  K   E+      N+  + FLV
Sbjct:   657 QLMVASCFRRSGNYQKALDTYK---EIHRKFPENVECLRFLV 695

GO:0001654 "eye development" evidence=IGI

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0003382 "epithelial cell morphogenesis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005814 "centriole" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005929 "cilium" evidence=IDA

GO:0005930 "axoneme" evidence=IDA

GO:0005932 "microtubule basal body" evidence=IDA

GO:0007224 "smoothened signaling pathway" evidence=IGI;IMP

GO:0007368 "determination of left/right symmetry" evidence=IMP

GO:0007399 "nervous system development" evidence=IMP

GO:0007420 "brain development" evidence=IGI;IMP

GO:0007507 "heart development" evidence=IGI

GO:0008104 "protein localization" evidence=IMP

GO:0009887 "organ morphogenesis" evidence=IMP

GO:0009952 "anterior/posterior pattern specification" evidence=IMP

GO:0009953 "dorsal/ventral pattern formation" evidence=IMP

GO:0016485 "protein processing" evidence=IMP

GO:0021513 "spinal cord dorsal/ventral patterning" evidence=IMP

GO:0021537 "telencephalon development" evidence=IMP

GO:0030030 "cell projection organization" evidence=IEA

GO:0030324 "lung development" evidence=IMP

GO:0031512 "motile primary cilium" evidence=IDA

GO:0032391 "photoreceptor connecting cilium" evidence=IDA

GO:0035085 "cilium axoneme" evidence=IDA

GO:0042487 "regulation of odontogenesis of dentin-containing tooth" evidence=IMP

GO:0042733 "embryonic digit morphogenesis" evidence=IGI;IMP

GO:0042995 "cell projection" evidence=IEA

GO:0045177 "apical part of cell" evidence=IDA

GO:0045862 "positive regulation of proteolysis" evidence=IMP

GO:0048568 "embryonic organ development" evidence=IMP

GO:0048598 "embryonic morphogenesis" evidence=IGI

GO:0048853 "forebrain morphogenesis" evidence=IMP

GO:0060021 "palate development" evidence=IGI

GO:0060173 "limb development" evidence=IGI

GO:0060271 "cilium morphogenesis" evidence=IMP

GO:0060411 "cardiac septum morphogenesis" evidence=IMP

GO:0060426 "lung vasculature development" evidence=IMP

UNIPROTKB|E1C168 IFT88 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 535 (193.4 bits), Expect = 4.0e-51, P = 4.0e-51
 Identities = 114/246 (46%), Positives = 160/246 (65%)

Query:    78 AVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDL 137
             A++ND+L Q+ RE K  AE  I+T+AKLIAP IE +F+ GY+WCV++++ S +  LA DL
Sbjct:   358 AIKNDSLRQIERERKSMAEDYIMTAAKLIAPVIETSFAVGYDWCVEAVKASHYVELANDL 417

Query:   138 EINKAVTFLRMNDVSQAVDVLKSCDE----MTSSAATNLSFIYFLQGEVEQAEKMAEEAC 193
             EINKA T+LR  D +QA++ LK  ++    + S+AATNLSF+Y+L+ E+ QA   A+ A 
Sbjct:   418 EINKATTYLRQRDFNQALETLKMFEKKDSRVKSAAATNLSFLYYLENELAQATNYADLAV 477

Query:   194 TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDS 253
             ++D YN AA  N GN   A  DY K  E Y  AL ND +C EALYNLGL +K LN   ++
Sbjct:   478 SSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDCSCTEALYNLGLTYKKLNRIDEA 537

Query:   254 LECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRND--ALSQLHREM 311
             L+CF KL AI+ +  +VL+QIA +YEI  D  QA +    L+   V  D   L++L +  
Sbjct:   538 LDCFLKLHAILGNSAQVLHQIADIYEIMEDPNQAIEWLMQLI-SVVPTDPHVLTKLGKLY 596

Query:   312 KHEAEK 317
              +E +K
Sbjct:   597 DNEGDK 602

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0003382 "epithelial cell morphogenesis" evidence=IEA

GO:0005814 "centriole" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0021537 "telencephalon development" evidence=IEA

GO:0031512 "motile primary cilium" evidence=IEA

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0042487 "regulation of odontogenesis of dentin-containing tooth" evidence=IEA

GO:0042733 "embryonic digit morphogenesis" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0045862 "positive regulation of proteolysis" evidence=IEA

GO:0048568 "embryonic organ development" evidence=IEA

GO:0048853 "forebrain morphogenesis" evidence=IEA

GO:0060271 "cilium morphogenesis" evidence=IEA

GO:0060411 "cardiac septum morphogenesis" evidence=IEA

GO:0060426 "lung vasculature development" evidence=IEA

UNIPROTKB|Q13099 IFT88 "Intraflagellar transport protein 88 homolog" [Homo sapiens (taxid:9606)]

 Score = 521 (188.5 bits), Expect = 1.7e-49, P = 1.7e-49
 Identities = 106/214 (49%), Positives = 145/214 (67%)

Query:    78 AVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDL 137
             A++ND L Q+ RE K  AEK I+TSAKLIAP IE +F+ GY+WCV+ ++ S +  LA DL
Sbjct:   367 AIKNDHLRQMERERKAMAEKYIMTSAKLIAPVIETSFAAGYDWCVEVVKASQYVELANDL 426

Query:   138 EINKAVTFLRMNDVSQAVDVLKSCDE----MTSSAATNLSFIYFLQGEVEQAEKMAEEAC 193
             EINKAVT+LR  D +QAV++LK  ++    + S+AATNLS +Y++  +  QA   A+ A 
Sbjct:   427 EINKAVTYLRQKDYNQAVEILKVLEKKDSRVKSAAATNLSALYYMGKDFAQASSYADIAV 486

Query:   194 TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDS 253
              +D YN AA  N GN   A  DY K  E Y  AL ND++C EALYN+GL ++ LN   ++
Sbjct:   487 NSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEA 546

Query:   254 LECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
             L+CF KL AI+ +  EVLYQIA++YE+  +  QA
Sbjct:   547 LDCFLKLHAILRNSAEVLYQIANIYELMENPSQA 580

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0003382 "epithelial cell morphogenesis" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0021537 "telencephalon development" evidence=IEA

GO:0031512 "motile primary cilium" evidence=IEA

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0042487 "regulation of odontogenesis of dentin-containing tooth" evidence=IEA

GO:0042733 "embryonic digit morphogenesis" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0045862 "positive regulation of proteolysis" evidence=IEA

GO:0048568 "embryonic organ development" evidence=IEA

GO:0048853 "forebrain morphogenesis" evidence=IEA

GO:0060411 "cardiac septum morphogenesis" evidence=IEA

GO:0060426 "lung vasculature development" evidence=IEA

GO:0005932 "microtubule basal body" evidence=ISS

GO:0005814 "centriole" evidence=ISS

GO:0005929 "cilium" evidence=ISS

GO:0060271 "cilium morphogenesis" evidence=ISS

GO:0031514 "motile cilium" evidence=ISS

GO:0030992 "intraflagellar transport particle B" evidence=ISS

UNIPROTKB|Q9FPW0 IFT88 "Intraflagellar transport particle protein IFT88" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 373 (136.4 bits), Expect = 8.1e-42, Sum P(2) = 8.1e-42
 Identities = 86/247 (34%), Positives = 137/247 (55%)

Query:    81 NDALSQLHREMKHEAEKCILTSAKLIAPSIE--DNFSNGYNWCVQSIRNSAHSSLAQDLE 138
             +D L    R+      + I+ +A+LI+  ++  + F  G+ WC + +R++ ++ LA ++E
Sbjct:   348 DDGLKDEMRKRNTIITRLIVKAAQLISEKVDRANGFEGGFMWCCEQLRDAGYTKLANEVE 407

Query:   139 INKAVTFLRMNDVSQAVDVLKSCDE----MTSSAATNLSFIYFLQGEVEQAEKMAEEACT 194
             + KA  F+      +AV V K  ++    + + AATNL+F+YFL+GE +QA+K +E A  
Sbjct:   408 LAKATRFMGQKQFDKAVGVFKDFEKKEPRVKARAATNLAFLYFLEGETDQADKYSEMALK 467

Query:   195 ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSL 254
             +D YN+ A+VN G   + R D    + L+  A   D  C+EA+YNLGL  + LNE   +L
Sbjct:   468 SDRYNARAYVNKGCVLVERGDLEGARSLFNEAAGIDPYCVEAIYNLGLVSQRLNELPYAL 527

Query:   255 ECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA-----LSQLHR 309
               F KL  +VP   EV++QIA+ Y++ GD + A    E LL   V ND      L  +H 
Sbjct:   528 AAFKKLHNMVPDNVEVIHQIATTYDMMGDFKNAVKWFE-LLTSLVSNDPGVLARLGAIHA 586

Query:   310 EMKHEAE 316
                 EA+
Sbjct:   587 RFDDEAK 593

GO:0005515 "protein binding" evidence=IPI

GO:0030992 "intraflagellar transport particle B" evidence=IDA

GO:0031514 "motile cilium" evidence=IDA

WB|WBGene00003885 osm-5 [Caenorhabditis elegans (taxid:6239)]

 Score = 391 (142.7 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 93/249 (37%), Positives = 143/249 (57%)

Query:    77 RAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQD 136
             + + +D L    +  K +AEK I+T+ K+I+P I  +++ GY WC++S++ S H+ LA +
Sbjct:   344 QTLNSDMLKNWEKRNKSDAEKAIITAVKIISPVIAPDYAIGYEWCLESLKQSVHAPLAIE 403

Query:   137 LEINKAVTFLRMNDVSQAVDVLK---SCDEMTSSAATN-LSFIYFLQG--EVEQAEKMAE 190
             LE+ KA   ++  D+  A++VLK   S D  T+SAA N L  + FLQG   +  A++ A+
Sbjct:   404 LEMTKAGELMKNGDIEGAIEVLKVFNSQDSKTASAAANNLCMLRFLQGGRRLVDAQQYAD 463

Query:   191 EACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEY 250
             +A + D YN+ A VN GN A    D  K    Y  AL+NDA+C++AL+N+GL  K     
Sbjct:   464 QALSIDRYNAHAQVNQGNIAYMNGDLDKALNNYREALNNDASCVQALFNIGLTAKAQGNL 523

Query:   251 SDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLH 308
               +LE F+KL  I+ +  +VL Q+AS+YE   D  QA ++        V ND   LS+L 
Sbjct:   524 EQALEFFYKLHGILLNNVQVLVQLASIYESLEDSAQAIELYSQAN-SLVPNDPAILSKLA 582

Query:   309 REMKHEAEK 317
                  E +K
Sbjct:   583 DLYDQEGDK 591

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0035058 "nonmotile primary cilium assembly" evidence=IMP

GO:0031513 "nonmotile primary cilium" evidence=IDA

FB|FBgn0016919 nompB "no mechanoreceptor potential B" [Drosophila melanogaster (taxid:7227)]

 Score = 293 (108.2 bits), Expect = 2.4e-23, P = 2.4e-23
 Identities = 74/222 (33%), Positives = 116/222 (52%)

Query:    68 SNINRKKNARAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRN 127
             + +  +   +A++ D L+    E ++  ++ I     LI+P IEDN+++GYNWC++ I+ 
Sbjct:   376 ATVKHRYVVQALKKDELAVYRNERRNAVKRSITMIVDLISPFIEDNYNDGYNWCIEIIKT 435

Query:   128 SAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDE-----MTSSAATNLSFIYFLQGEV 182
             S  + LA +LE+NKA+ +LR NDV QA++ L+  D      MT+SA TNLSFIY      
Sbjct:   436 SNLAWLANELELNKALVYLRQNDVHQAIETLQMYDRKSEGSMTASALTNLSFIYIKMAS- 494

Query:   183 EQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL 242
                 ++ E     +  N+   +N G   +   + +   E +  AL       EA YNLGL
Sbjct:   495 HCVNQLHEIGSLKN--NAPGLINAGIVELGSHNLILASERFEGALQLQPMNFEARYNLGL 552

Query:   243 AHKHLNEYSDSLECFHKL--QAIVPSMPE---VLYQIASLYE 279
                  N+Y  + E F  L  Q ++PS  +   V YQ+A L E
Sbjct:   553 VALAQNDYELAEERFELLKEQLMLPSSVQHSHVFYQLAKLQE 594

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0042073 "intraflagellar transport" evidence=NAS

GO:0035058 "nonmotile primary cilium assembly" evidence=IMP

GO:0009296 "flagellum assembly" evidence=IMP

GO:0042384 "cilium assembly" evidence=ISM

UNIPROTKB|F1RVB0 LOC100519382 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 179 (68.1 bits), Expect = 4.9e-11, P = 4.9e-11
 Identities = 55/198 (27%), Positives = 97/198 (48%)

Query:     2 ERPEEKFERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSH 61
             + PEEK  ++E+++  L++ESC+ +   D K ALEKAK A  KERVL++ +EQ    ++ 
Sbjct:   132 DSPEEKIRQLEKKVNELVEESCVASSCGDLKLALEKAKDAGRKERVLVRQREQVASPENI 191

Query:    62 NIELTFS---NINRKKNARAVRNDALSQ----LHREMKHEAEKCILTSAKLIAPSIEDNF 114
             N++LT+S    +  + +A  +  +AL+     +  +M   A +  +    +     + N+
Sbjct:   192 NLDLTYSVLFTLASQYSANEMYAEALNTYQVIVKNKMFSNAGRLKVNMGNIYLK--QRNY 249

Query:   115 SNG---YNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSS--AA 169
             S     Y   +  I  S H  +   +  N  VTF++    S AV+  +       +  A 
Sbjct:   250 SKAIKFYRMALDQIP-SVHKEMRIKIMQNIGVTFIKTGQYSDAVNSFEHIMSTAPNLKAG 308

Query:   170 TNLSFIYFLQGEVEQAEK 187
              NL   YF  G+ E+ +K
Sbjct:   309 FNLILSYFALGDREKMKK 326

GO:0060426 "lung vasculature development" evidence=IEA

GO:0060411 "cardiac septum morphogenesis" evidence=IEA

GO:0060271 "cilium morphogenesis" evidence=IEA

GO:0048853 "forebrain morphogenesis" evidence=IEA

GO:0048568 "embryonic organ development" evidence=IEA

GO:0045862 "positive regulation of proteolysis" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0042733 "embryonic digit morphogenesis" evidence=IEA

GO:0042487 "regulation of odontogenesis of dentin-containing tooth" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0031512 "motile primary cilium" evidence=IEA

GO:0021537 "telencephalon development" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0005814 "centriole" evidence=IEA

GO:0003382 "epithelial cell morphogenesis" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	425
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-11
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-09
pfam13414	69	pfam13414, TPR_11, TPR repeat	6e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	5e-04
COG0790	292	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily	5e-04
CHL00033	168	CHL00033, ycf3, photosystem I assembly protein Ycf	7e-04
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	0.001
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.002
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	0.002
PRK02603	172	PRK02603, PRK02603, photosystem I assembly protein	0.003

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 60.5 bits (147), Expect = 1e-11
 Identities = 28/86 (32%), Positives = 41/86 (47%)

Query: 202 AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQ 261
           A +NLGN      DY +  E Y  AL+ D    +A YNL  A+  L +Y ++LE + K  
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 262 AIVPSMPEVLYQIASLYEITGDVEQA 287
            + P   +  Y +   Y   G  E+A
Sbjct: 62  ELDPDNAKAYYNLGLAYYKLGKYEEA 87

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 32/99 (32%), Positives = 51/99 (51%)

Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
           A  NL  +Y+  G+ ++A +  E+A   D  N+ A+ NL         Y +  E Y  AL
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266
           + D    +A YNLGLA+  L +Y ++LE + K   + P+
Sbjct: 62  ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNE-YSDSLECF 257
           N+ A  NLGN      DY +  E Y  AL+ D    EA YNL LA+  L + Y ++LE  
Sbjct: 2   NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61

Query: 258 HKLQAIVP 265
            K   + P
Sbjct: 62  EKALELDP 69

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 6/97 (6%)

Query: 235 EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENL 294
           EAL NLG  +  L +Y ++LE + K   + P   +  Y +A+ Y   G  E+A +  E  
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 295 L------LEAVRNDALSQLHREMKHEAEKCILTSAKL 325
           L       +A  N  L+        EA +    + +L
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 139 INKAVTFLRMNDVSQAVDVLKSC---DEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA 195
           +N    + ++ D  +A++  +     D   + A  NL+  Y+  G+ E+A +  E+A   
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63

Query: 196 DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
           D  N+ A+ NLG        Y +  E Y  AL+ D
Sbjct: 64  DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 26/120 (21%), Positives = 44/120 (36%)

Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
           A   L+ +Y   G  E+A    E+A   +       + L    + +    K   +   A 
Sbjct: 535 AILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAA 594

Query: 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
           D      EA   LG A     + + ++  F KL A+ P     L  +A  Y +  +  +A
Sbjct: 595 DAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKA 654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]

 Score = 41.2 bits (96), Expect = 5e-04
 Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 9/153 (5%)

Query: 100 LTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVD-VL 158
           L+   L A + E+  S       +   +   +++A    +          D ++A+    
Sbjct: 7   LSGKSLFAAAEENAVSTLGKLLSEG-GDPLMAAVALKSALLNGAGSAYPPDYAKALKSYE 65

Query: 159 KSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEE--ACTADTYNSAAFVNLGNCAMARE-- 214
           K+ +   ++A   L  +Y     V + +  A +   C A    + A  NLG         
Sbjct: 66  KAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGV 125

Query: 215 --DYVKGKELYVHALD-NDATCIEALYNLGLAH 244
             D VK  + Y  A    +     A+Y LGLA+
Sbjct: 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAY 158

Length = 292

>gnl|CDD|176974 CHL00033, ycf3, photosystem I assembly protein Ycf3

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 12/86 (13%)

Query: 223 YVHALDN--DATCIEA--------LYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLY 272
           Y  AL N  +A  +E         LYN+GL H    E++ +LE + +     P +P+ L 
Sbjct: 51  YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALN 110

Query: 273 QIASLYEITGDVEQASDVNENLLLEA 298
            +A +    G  EQA +  ++ + EA
Sbjct: 111 NMAVICHYRG--EQAIEQGDSEIAEA 134

Length = 168

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 30/116 (25%), Positives = 44/116 (37%), Gaps = 4/116 (3%)

Query: 177 FL--QGEVEQAEKMAEEACTADTY--NSAAFVNLGNCAMAREDYVKGKELYVHALDNDAT 232
           FL  QG  E+A +  E A     Y   S    NLG CA+    + + +E    AL+ D  
Sbjct: 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ 171

Query: 233 CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQAS 288
              AL  L   H    +Y+ +     + Q    +  E L     + +  GD   A 
Sbjct: 172 FPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQ 227

Length = 250

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 7/78 (8%)

Query: 196 DTYNSAAFVNLGNCAMAREDYVKGKELYVHAL-------DNDATCIEALYNLGLAHKHLN 248
               +AA  NL        DY +  EL   AL       ++      AL NL   +  L 
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60

Query: 249 EYSDSLECFHKLQAIVPS 266
           +Y ++LE   K  A+  +
Sbjct: 61  DYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 8/117 (6%)

Query: 177 FL--QGEVEQAEKMAEEACTADTYN--SAAFVNLGNCAMAREDYVKGKELYVHALDNDAT 232
           FL  QG+ EQA +  E+A     Y   + +  N G CA+   D+ K ++    AL  D  
Sbjct: 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ 167

Query: 233 CIEALYNLGLAHKHLN--EYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
             E+L  L LA  +    +Y D+     + Q       E L+    +    GDV  A
Sbjct: 168 RPESL--LELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAA 222

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 4/90 (4%)

Query: 207 GNCAMAREDYVKGKELYVHAL---DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI 263
           G  A A  +Y +  E Y  AL   ++       LYN+G+ +    E+  +LE +H+   +
Sbjct: 42  GMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101

Query: 264 VPSMPEVLYQIASLYEITGD-VEQASDVNE 292
            P  P  L  IA +Y   G+  E+A D +E
Sbjct: 102 NPKQPSALNNIAVIYHKRGEKAEEAGDQDE 131

Length = 172

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	425
KOG2003|consensus	840		100.0
KOG4626|consensus	966		100.0
KOG4626|consensus	966		100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.96
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.94
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.94
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.94
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.94
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.93
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.93
KOG0547|consensus	606		99.93
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.92
KOG1126|consensus	638		99.92
KOG2002|consensus	1018		99.91
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.91
KOG1126|consensus	638		99.89
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.88
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.87
KOG1155|consensus	559		99.87
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.86
KOG2002|consensus	1018		99.85
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.85
KOG1173|consensus	611		99.84
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.84
PRK11189	296	lipoprotein NlpI; Provisional	99.84
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.84
PRK12370	553	invasion protein regulator; Provisional	99.83
KOG0547|consensus	606		99.82
KOG1173|consensus	611		99.82
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.82
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.81
KOG1155|consensus	559		99.81
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.81
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.8
KOG1129|consensus	478		99.8
PRK12370	553	invasion protein regulator; Provisional	99.79
KOG1125|consensus	579		99.78
KOG1840|consensus	508		99.78
PRK11189	296	lipoprotein NlpI; Provisional	99.76
KOG1174|consensus	564		99.76
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.76
KOG0624|consensus	504		99.76
KOG0550|consensus	486		99.75
KOG2003|consensus	840		99.74
KOG0624|consensus	504		99.73
KOG0495|consensus	913		99.73
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.73
KOG0548|consensus	539		99.73
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.73
KOG2076|consensus	895		99.73
PRK15359	144	type III secretion system chaperone protein SscB;	99.72
KOG1129|consensus	478		99.71
KOG2076|consensus	895		99.71
PLN02789	320	farnesyltranstransferase	99.71
KOG1174|consensus	564		99.71
KOG1840|consensus	508		99.71
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.71
PRK15359	144	type III secretion system chaperone protein SscB;	99.7
KOG1125|consensus	579		99.69
PRK14574	822	hmsH outer membrane protein; Provisional	99.69
PLN02789	320	farnesyltranstransferase	99.68
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.68
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.67
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.66
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.66
KOG0548|consensus	539		99.66
KOG4162|consensus	799		99.65
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.65
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.63
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.63
PRK14574	822	hmsH outer membrane protein; Provisional	99.63
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.62
PLN03218	1060	maturation of RBCL 1; Provisional	99.58
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.58
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.58
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.58
KOG3060|consensus	289		99.57
KOG0495|consensus	913		99.57
KOG0550|consensus	486		99.56
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.55
KOG3060|consensus	289		99.55
KOG0553|consensus	304		99.53
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.53
KOG4162|consensus	799		99.52
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.52
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.52
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.51
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.51
KOG1156|consensus	700		99.51
KOG0553|consensus	304		99.5
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.5
PLN03077	857	Protein ECB2; Provisional	99.49
PLN03077	857	Protein ECB2; Provisional	99.49
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.47
PLN03218	1060	maturation of RBCL 1; Provisional	99.46
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.46
KOG1127|consensus	1238		99.46
KOG1156|consensus	700		99.44
KOG1130|consensus	639		99.42
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.42
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.42
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.41
KOG1128|consensus	777		99.36
KOG3785|consensus	557		99.36
KOG1130|consensus	639		99.36
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.35
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.35
KOG1127|consensus	1238		99.33
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.31
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.31
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.31
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.28
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.28
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.26
KOG2376|consensus	652		99.26
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.26
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.25
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.25
KOG1128|consensus	777		99.25
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.25
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.24
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.24
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.23
KOG1915|consensus	677		99.22
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.22
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.22
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.22
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.19
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.18
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.18
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.18
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.17
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.16
KOG3785|consensus	557		99.16
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.15
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.15
PRK15331	165	chaperone protein SicA; Provisional	99.14
KOG2376|consensus	652		99.14
KOG1941|consensus	518		99.14
KOG0543|consensus	397		99.13
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.13
KOG0543|consensus	397		99.13
PRK15331	165	chaperone protein SicA; Provisional	99.13
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.12
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.12
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.12
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.11
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.1
KOG2047|consensus	835		99.09
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.09
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.08
PRK10803	263	tol-pal system protein YbgF; Provisional	99.06
PRK04841	903	transcriptional regulator MalT; Provisional	99.06
PRK10803	263	tol-pal system protein YbgF; Provisional	99.03
PF12688	120	TPR_5: Tetratrico peptide repeat	99.03
PRK11906	458	transcriptional regulator; Provisional	99.02
PRK11906	458	transcriptional regulator; Provisional	99.01
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.01
KOG4340|consensus	459		99.0
PRK04841	903	transcriptional regulator MalT; Provisional	98.98
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.96
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.95
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.91
KOG4340|consensus	459		98.9
PF12688	120	TPR_5: Tetratrico peptide repeat	98.9
KOG1915|consensus	677		98.88
KOG4234|consensus	271		98.88
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.86
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.85
PF13512	142	TPR_18: Tetratricopeptide repeat	98.83
PF13371	73	TPR_9: Tetratricopeptide repeat	98.82
PF13512	142	TPR_18: Tetratricopeptide repeat	98.81
KOG4234|consensus	271		98.8
PF13371	73	TPR_9: Tetratricopeptide repeat	98.79
KOG2047|consensus	835		98.79
KOG4648|consensus	536		98.76
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.76
KOG1941|consensus	518		98.75
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.75
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.74
KOG4648|consensus	536		98.73
KOG4555|consensus	175		98.72
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.71
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.7
KOG3081|consensus	299		98.68
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.68
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.67
KOG3081|consensus	299		98.66
KOG2796|consensus	366		98.66
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.64
KOG4555|consensus	175		98.62
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.62
KOG1586|consensus	288		98.58
KOG3617|consensus	1416		98.58
KOG1586|consensus	288		98.56
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.55
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.54
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.54
KOG2053|consensus	932		98.54
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.53
KOG1070|consensus	1710		98.46
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.41
KOG2796|consensus	366		98.38
KOG3617|consensus	1416		98.38
KOG2471|consensus	696		98.38
KOG4642|consensus	284		98.38
KOG4642|consensus	284		98.36
KOG1070|consensus	1710		98.27
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.21
KOG1585|consensus	308		98.21
PF13428	44	TPR_14: Tetratricopeptide repeat	98.18
PF13428	44	TPR_14: Tetratricopeptide repeat	98.17
KOG2053|consensus	932		98.15
KOG0545|consensus	329		98.13
KOG0376|consensus	476		98.13
KOG2610|consensus	491		98.12
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.1
KOG0545|consensus	329		98.09
PF13431	34	TPR_17: Tetratricopeptide repeat	98.09
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.09
KOG0376|consensus	476		98.05
KOG1585|consensus	308		98.03
PF13431	34	TPR_17: Tetratricopeptide repeat	98.01
KOG2471|consensus	696		97.93
KOG2610|consensus	491		97.91
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.9
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.88
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.88
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.85
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.85
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.85
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.84
KOG0551|consensus	390		97.83
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.82
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.8
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.8
KOG0551|consensus	390		97.73
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.71
KOG1550|consensus	552		97.7
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.67
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.62
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.6
KOG3616|consensus	1636		97.58
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.56
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.56
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.52
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.48
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.47
KOG1308|consensus	377		97.46
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.4
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.35
KOG1914|consensus	656		97.32
KOG1308|consensus	377		97.32
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.3
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	97.14
KOG1258|consensus	577		97.1
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.07
KOG4507|consensus	886		96.99
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.98
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.97
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.95
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.94
KOG0985|consensus	1666		96.93
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.92
KOG0985|consensus	1666		96.9
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	96.87
KOG0530|consensus	318		96.87
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	96.83
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.82
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.8
KOG2300|consensus	629		96.79
KOG1839|consensus	1236		96.78
KOG2300|consensus	629		96.74
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.74
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.72
KOG1550|consensus	552		96.71
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.7
KOG3824|consensus	472		96.66
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.66
PRK10941	269	hypothetical protein; Provisional	96.63
KOG3824|consensus	472		96.62
KOG4507|consensus	886		96.61
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.6
KOG2396|consensus	568		96.54
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.48
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	96.39
PRK10941	269	hypothetical protein; Provisional	96.37
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.35
KOG2396|consensus	568		96.3
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.25
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.23
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.19
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.16
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.15
KOG3364|consensus	149		96.13
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.99
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.93
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.89
COG5159	421	RPN6 26S proteasome regulatory complex component [	95.85
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.85
KOG4814|consensus	872		95.84
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.8
KOG1258|consensus	577		95.79
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.79
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.73
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.72
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.62
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	95.61
KOG1310|consensus	758		95.55
KOG3364|consensus	149		95.49
KOG0530|consensus	318		95.43
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	95.24
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.22
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.19
KOG1310|consensus	758		95.12
KOG2422|consensus	665		95.12
COG5191	435	Uncharacterized conserved protein, contains HAT (H	94.97
KOG1464|consensus	440		94.96
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.96
KOG4014|consensus	248		94.92
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	94.87
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.85
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	94.8
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	94.71
KOG4814|consensus	872		94.65
KOG3807|consensus	556		94.53
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	94.44
KOG2581|consensus	493		94.39
KOG2041|consensus	1189		94.37
KOG2041|consensus	1189		94.17
KOG1463|consensus	411		94.13
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	94.1
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.99
KOG2422|consensus	665		93.95
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.72
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	93.67
KOG0890|consensus	2382		93.35
KOG1839|consensus	1236		93.32
COG5191	435	Uncharacterized conserved protein, contains HAT (H	93.22
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	93.17
KOG1914|consensus	656		93.17
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.16
KOG3783|consensus	546		93.15
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.11
COG2912	269	Uncharacterized conserved protein [Function unknow	93.05
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.0
COG5159	421	RPN6 26S proteasome regulatory complex component [	92.93
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	92.89
KOG3616|consensus	1636		92.74
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	92.71
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	92.68
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	92.6
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	92.13
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	91.88
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	91.48
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	91.4
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.37
COG2912	269	Uncharacterized conserved protein [Function unknow	91.35
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	91.15
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	90.98
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	90.72
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	90.71
KOG1538|consensus	1081		90.67
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	90.61
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	90.6
KOG1464|consensus	440		90.36
KOG4014|consensus	248		90.22
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	90.15
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	90.12
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	90.07
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	89.8
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	89.6
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	88.88
KOG2581|consensus	493		88.47
KOG0890|consensus	2382		88.46
KOG0529|consensus	421		88.45
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	88.07
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	87.91
COG3947	361	Response regulator containing CheY-like receiver a	87.9
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	87.66
KOG0529|consensus	421		86.96
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	86.91
PF04212	69	MIT: MIT (microtubule interacting and transport) d	86.33
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	86.3
COG3947	361	Response regulator containing CheY-like receiver a	86.28
PF12854	34	PPR_1: PPR repeat	85.84
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	85.63
KOG1538|consensus	1081		85.59
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	85.23
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	85.13
PF13041	50	PPR_2: PPR repeat family	85.1
KOG0546|consensus	372		85.07
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	84.84
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	84.56
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	84.41
COG1747	711	Uncharacterized N-terminal domain of the transcrip	84.09
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	83.88
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	83.83
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	83.78
PF12854	34	PPR_1: PPR repeat	83.6
PF13041	50	PPR_2: PPR repeat family	82.96
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	82.84
COG4455	273	ImpE Protein of avirulence locus involved in tempe	82.79
KOG0546|consensus	372		82.35
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	82.25
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	80.98
cd02656	75	MIT MIT: domain contained within Microtubule Inter	80.67
KOG0686|consensus	466		80.43
COG4455	273	ImpE Protein of avirulence locus involved in tempe	80.1

>KOG2003|consensus

Probab=100.00  E-value=6.5e-45  Score=321.45  Aligned_cols=414  Identities=38%  Similarity=0.552  Sum_probs=366.0

Q ss_pred             CCChHHHHHHHHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcc------------
Q psy1863           1 MERPEEKFERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFS------------   68 (425)
Q Consensus         1 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~------------   68 (425)
                      |++|++|+++||.+|++|++.++.....|+|++|++++++|...+|.+.++|++.+++...|+++||.            
T Consensus       135 ed~peek~kqle~ev~ell~es~ian~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~n  214 (840)
T KOG2003|consen  135 EDGPEEKCKQLEKEVMELLEESCIANECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEAN  214 (840)
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhh
Confidence            68999999999999999999999999999999999999999999999999999999999999999988            


Q ss_pred             --------------------hhhhhc-c----------------------------------------------------
Q psy1863          69 --------------------NINRKK-N----------------------------------------------------   75 (425)
Q Consensus        69 --------------------~~~~~~-~----------------------------------------------------   75 (425)
                                          +.|.++ |                                                    
T Consensus       215 dm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~d  294 (840)
T KOG2003|consen  215 DMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDD  294 (840)
T ss_pred             HHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchh
Confidence                                222222 0                                                    


Q ss_pred             -----------------------------------------------------------------hhhcccchhHHHHHH
Q psy1863          76 -----------------------------------------------------------------ARAVRNDALSQLHRE   90 (425)
Q Consensus        76 -----------------------------------------------------------------~~~~~~d~l~~~~~~   90 (425)
                                                                                       .+++.+|-|++++++
T Consensus       295 ainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~  374 (840)
T KOG2003|consen  295 AINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKE  374 (840)
T ss_pred             hHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHh
Confidence                                                                             677889999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc----cchH
Q psy1863          91 MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD----EMTS  166 (425)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~----~~~~  166 (425)
                      +...++++|.+++++|+|.|.++|..|++||.+.++.+.+.+++.++.++++..++++|+++.|+++++-+-    ....
T Consensus       375 ~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~s  454 (840)
T KOG2003|consen  375 NKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTAS  454 (840)
T ss_pred             hhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhH
Confidence            999999999999999999999999999999999999999999999999999999999999999999988776    2334


Q ss_pred             HHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q psy1863         167 SAATNLSFIYFLQG--EVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAH  244 (425)
Q Consensus       167 ~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~  244 (425)
                      .+-.+|..+++.+|  ++.+|..+...++.++..++.++.+.|++.+..|++++|...|+.++..+.++.++++++|..+
T Consensus       455 aaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~  534 (840)
T KOG2003|consen  455 AAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTA  534 (840)
T ss_pred             HHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccH
Confidence            55677888887754  7899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHH
Q psy1863         245 KHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEK  317 (425)
Q Consensus       245 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~  317 (425)
                      ..+|+.++|+++|-+...+--++..+++.++.+|..+.+..+|++++.+ +..+-|++|  +..|+.+     +..+|.+
T Consensus       535 e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q-~~slip~dp~ilskl~dlydqegdksqafq  613 (840)
T KOG2003|consen  535 EALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ-ANSLIPNDPAILSKLADLYDQEGDKSQAFQ  613 (840)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH-hcccCCCCHHHHHHHHHHhhcccchhhhhh
Confidence            9999999999999999888889999999999999999999999999999 999999999  8999998     8899999


Q ss_pred             HHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhh---------hcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCC
Q psy1863         318 CILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSL---------AQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSA  388 (425)
Q Consensus       318 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  388 (425)
                      ++-...+.+|.+++...+++..++.......+...+         .....+.++.|+.+.|+|++|.+.|+..   ....
T Consensus       614 ~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~---hrkf  690 (840)
T KOG2003|consen  614 CHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI---HRKF  690 (840)
T ss_pred             hhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHH---HHhC
Confidence            999999999999999888875555544444444433         2234456899999999999999999998   6677


Q ss_pred             ccchhHHHHHhhhccCcCCCCcHHHHHHhHh
Q psy1863         389 ATNLSFIYFLVSSEFQYLPTSEVPIYLENLL  419 (425)
Q Consensus       389 ~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l  419 (425)
                      |+++.++.||++- -+.+--.++.+|..++-
T Consensus       691 pedldclkflvri-~~dlgl~d~key~~kle  720 (840)
T KOG2003|consen  691 PEDLDCLKFLVRI-AGDLGLKDAKEYADKLE  720 (840)
T ss_pred             ccchHHHHHHHHH-hccccchhHHHHHHHHH
Confidence            8888888887542 22233556667766553

>KOG4626|consensus

Probab=100.00  E-value=2.5e-33  Score=256.50  Aligned_cols=350  Identities=14%  Similarity=0.120  Sum_probs=240.9

Q ss_pred             HHHHHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcc-----hhhcccc
Q psy1863           8 FERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKN-----ARAVRND   82 (425)
Q Consensus         8 ~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~d   82 (425)
                      +|+-.+-.+.+.+.|-.+..+|+++.|+..++.++++.        |....++.+++..+...|++..     .+++..+
T Consensus       109 ~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~--------p~fida~inla~al~~~~~~~~a~~~~~~alqln  180 (966)
T KOG4626|consen  109 IRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELK--------PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN  180 (966)
T ss_pred             hhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--------chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC
Confidence            33444445667778888999999999999999999988        7777788888888888887661     1111100


Q ss_pred             --------hhHHH--HHHHHHHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHH
Q psy1863          83 --------ALSQL--HREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVS  152 (425)
Q Consensus        83 --------~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~  152 (425)
                              .+..+  ...+..++..+.+.+...                      .+   .-+-.+-++|-++..+|+..
T Consensus       181 P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~----------------------qp---~fAiawsnLg~~f~~~Gei~  235 (966)
T KOG4626|consen  181 PDLYCARSDLGNLLKAEGRLEEAKACYLKAIET----------------------QP---CFAIAWSNLGCVFNAQGEIW  235 (966)
T ss_pred             cchhhhhcchhHHHHhhcccchhHHHHHHHHhh----------------------CC---ceeeeehhcchHHhhcchHH
Confidence                    01111  112222333333322211                      00   11122356677777777777


Q ss_pred             HHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q psy1863         153 QAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN  229 (425)
Q Consensus       153 ~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  229 (425)
                      .|+..|++++   |..+++|.+||.+|-..+.|+.|+.+|.+|+...|+++.++-++|.+|..+|..+-|+.+|++++++
T Consensus       236 ~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~  315 (966)
T KOG4626|consen  236 LAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL  315 (966)
T ss_pred             HHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc
Confidence            7777777776   7777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHH
Q psy1863         230 DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQL  307 (425)
Q Consensus       230 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l  307 (425)
                      .|+.+.++.|+|.++...|+..+|..+|.+++.+.|+.+++.++||.+|..+|.++.|..+|.+ +++..|+..  ..+|
T Consensus       316 ~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~-al~v~p~~aaa~nNL  394 (966)
T KOG4626|consen  316 QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLK-ALEVFPEFAAAHNNL  394 (966)
T ss_pred             CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHH-HHhhChhhhhhhhhH
Confidence            7777777777777777777777777777777777777777777777777777777777777777 777777766  6666


Q ss_pred             HHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHH---------hhchhhhcHHHHHHHHHHHhcCCHHH
Q psy1863         308 HRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRN---------SAHSSLAQDLEINKAVTFLRMNDVSQ  373 (425)
Q Consensus       308 ~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~la~~~~~~g~~~~  373 (425)
                      +.+     ++++|+.+|++++++.|...+...+.|-.+-..+.-.         ....|-..+++.++|.+|...|+..+
T Consensus       395 a~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~  474 (966)
T KOG4626|consen  395 ASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPE  474 (966)
T ss_pred             HHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHH
Confidence            666     6777777777777777777766666663332222211         22233345778889999999999999


Q ss_pred             HHHHHHHHHhhccCCccc
Q psy1863         374 AVDVLKSCDEMTSSAATN  391 (425)
Q Consensus       374 A~~~~~~~~~~~~~~~~~  391 (425)
                      ||..|+.+.++.|+.|+.
T Consensus       475 AI~sY~~aLklkPDfpdA  492 (966)
T KOG4626|consen  475 AIQSYRTALKLKPDFPDA  492 (966)
T ss_pred             HHHHHHHHHccCCCCchh
Confidence            999999999999998873

>KOG4626|consensus

Probab=100.00  E-value=4.3e-32  Score=248.49  Aligned_cols=387  Identities=17%  Similarity=0.155  Sum_probs=298.8

Q ss_pred             HHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhc-----chhhc-----ccchhHH
Q psy1863          17 GLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKK-----NARAV-----RNDALSQ   86 (425)
Q Consensus        17 ~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~-----~~d~l~~   86 (425)
                      ..++-|...++.|+|++|++.+......+        |.+.+...-++-.+.+..++.     +..++     ..|.+..
T Consensus        50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d--------~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn  121 (966)
T KOG4626|consen   50 DRLELAHRLYQGGDYKQAEKHCNMVGQED--------PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSN  121 (966)
T ss_pred             hHHHHHHHHHhccCHHHHHHHHhHhhccC--------CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHH
Confidence            37788999999999999999987655433        666666667777777666654     11111     1122221


Q ss_pred             H-----HHHHHHHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcch--------------hhHHHHHHHHHHHH
Q psy1863          87 L-----HREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSL--------------AQDLEINKAVTFLR  147 (425)
Q Consensus        87 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~a~~~~~  147 (425)
                      +     +++....+......+     ..+.++|..+|--+...+...+..+.              .....-.+|..+-.
T Consensus       122 ~aN~~kerg~~~~al~~y~~a-----iel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka  196 (966)
T KOG4626|consen  122 LANILKERGQLQDALALYRAA-----IELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKA  196 (966)
T ss_pred             HHHHHHHhchHHHHHHHHHHH-----HhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHh
Confidence            1     111112222222211     13344555544433333333222222              22334467888889


Q ss_pred             cCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q psy1863         148 MNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYV  224 (425)
Q Consensus       148 ~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  224 (425)
                      .|+..+|..+|.+++   |..+.+|.+||.++..+|+...|+.+|++|++++|...++|++||++|-..+.+++|+.+|.
T Consensus       197 ~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~  276 (966)
T KOG4626|consen  197 EGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYL  276 (966)
T ss_pred             hcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHH
Confidence            999999999999999   88899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH-
Q psy1863         225 HALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA-  303 (425)
Q Consensus       225 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~-  303 (425)
                      +++.+.|+++.++.|+|.+|..+|..+-|+.+|+++++..|+.++++.++|.++...|+..+|..+|.+ ++.+.|+++ 
T Consensus       277 rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnk-aL~l~p~had  355 (966)
T KOG4626|consen  277 RALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNK-ALRLCPNHAD  355 (966)
T ss_pred             HHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHH-HHHhCCccHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999 999999999 


Q ss_pred             -HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHH---------hhchhhhcHHHHHHHHHHHhc
Q psy1863         304 -LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRN---------SAHSSLAQDLEINKAVTFLRM  368 (425)
Q Consensus       304 -~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~la~~~~~~  368 (425)
                       +.+||.+     ..++|...|.+++..+|.......+++..+-.++...         ....|...+.+.++|..|..+
T Consensus       356 am~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~  435 (966)
T KOG4626|consen  356 AMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEM  435 (966)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHh
Confidence             8999988     8899999999999999998888777764333222222         334455678888999999999


Q ss_pred             CCHHHHHHHHHHHHhhccCCcc---chhHHHHHhhhccCcCCCCcHHHHHHhHhHHhh
Q psy1863         369 NDVSQAVDVLKSCDEMTSSAAT---NLSFIYFLVSSEFQYLPTSEVPIYLENLLTVLQ  423 (425)
Q Consensus       369 g~~~~A~~~~~~~~~~~~~~~~---~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~  423 (425)
                      |+.+.|+..|.++....|...+   |+..+|-    +.|  -..+|+.-++++|++=|
T Consensus       436 g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k----DsG--ni~~AI~sY~~aLklkP  487 (966)
T KOG4626|consen  436 GDVSAAIQCYTRAIQINPTFAEAHSNLASIYK----DSG--NIPEAIQSYRTALKLKP  487 (966)
T ss_pred             hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh----ccC--CcHHHHHHHHHHHccCC
Confidence            9999999999999887776543   4554444    445  57788888888887644

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.96  E-value=9.3e-27  Score=232.96  Aligned_cols=245  Identities=12%  Similarity=0.056  Sum_probs=200.8

Q ss_pred             cCCHHHHHHHHHhcc------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHH
Q psy1863         148 MNDVSQAVDVLKSCD------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKE  221 (425)
Q Consensus       148 ~g~~~~A~~~~~~~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  221 (425)
                      .+++++|+..|++++      |..+.++..+|.++..+|++++|+..|++++..+|.+..+++.+|.++...|++++|+.
T Consensus       307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~  386 (615)
T TIGR00990       307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE  386 (615)
T ss_pred             hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            468999999999887      45677889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcc
Q psy1863         222 LYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRN  301 (425)
Q Consensus       222 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~  301 (425)
                      +|+++++.+|+++.+++++|.++...|++++|+.+|++++.++|++..++.++|.++..+|++++|+..|++ ++...|+
T Consensus       387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~-al~~~P~  465 (615)
T TIGR00990       387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRR-CKKNFPE  465 (615)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999 9999998


Q ss_pred             hH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhc------hHHHH---------HHHhHH-hhchhhhcHHH
Q psy1863         302 DA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSN------GYNWC---------VQSIRN-SAHSSLAQDLE  358 (425)
Q Consensus       302 ~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~------~~~~~---------~~~~~~-~~~~~~~~~~~  358 (425)
                      ++  +..+|.+     ++++|+..|++++.+.|.........      +....         ...+.. ....+.....+
T Consensus       466 ~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~  545 (615)
T TIGR00990       466 APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAV  545 (615)
T ss_pred             ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence            88  6677777     88999999999999988653322211      10000         011111 11223334567


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchh
Q psy1863         359 INKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLS  393 (425)
Q Consensus       359 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~  393 (425)
                      ..+|.++...|++++|+..|+++.++.+...+...
T Consensus       546 ~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~~  580 (615)
T TIGR00990       546 ATMAQLLLQQGDVDEALKLFERAAELARTEGELVQ  580 (615)
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHHH
Confidence            78999999999999999999999877665444333

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.94  E-value=1.6e-23  Score=220.00  Aligned_cols=382  Identities=14%  Similarity=0.094  Sum_probs=258.1

Q ss_pred             HHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHH--
Q psy1863          15 IIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMK--   92 (425)
Q Consensus        15 ~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~--   92 (425)
                      +..++..|..+..+|++++|+..+++++++.        |........++..|...|++..       ++..+..-..  
T Consensus        22 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~g~~~~-------A~~~~~~~~~~~   86 (899)
T TIGR02917        22 PESLIEAAKSYLQKNKYKAAIIQLKNALQKD--------PNDAEARFLLGKIYLALGDYAA-------AEKELRKALSLG   86 (899)
T ss_pred             HHHHHHHHHHHHHcCChHhHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHH-------HHHHHHHHHHcC
Confidence            3568899999999999999999999999877        6666677778888888887662       1111111000  


Q ss_pred             HHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhc--CCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHH
Q psy1863          93 HEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNS--AHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSS  167 (425)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~  167 (425)
                      +.........++..  ...+++    ...++.+...  ...+.....+..+|..+...|++++|+..|++++   |..+.
T Consensus        87 ~~~~~~~~~~a~~~--~~~g~~----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  160 (899)
T TIGR02917        87 YPKNQVLPLLARAY--LLQGKF----QQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLY  160 (899)
T ss_pred             CChhhhHHHHHHHH--HHCCCH----HHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Confidence            00000000000000  001112    2222222211  1233445667788888888888888888888887   77788


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHc
Q psy1863         168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHL  247 (425)
Q Consensus       168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  247 (425)
                      ++..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..|++++..+|+++.++..++.++...
T Consensus       161 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~  240 (899)
T TIGR02917       161 AKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEA  240 (899)
T ss_pred             hHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHH
Q psy1863         248 NEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCIL  320 (425)
Q Consensus       248 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~  320 (425)
                      |++++|...++++++..|+++.+++..|.++...|++++|+..+++ +++..|++.  +..++.+     ++++|...+.
T Consensus       241 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~  319 (899)
T TIGR02917       241 GEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQD-ALKSAPEYLPALLLAGASEYQLGNLEQAYQYLN  319 (899)
T ss_pred             CCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHH-HHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHH
Confidence            8888888888888888888888888888888888888888888888 888888766  4444444     7888888888


Q ss_pred             HHHhhcCCchhhHhhchHHHHHHHhHHh---------hchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccc
Q psy1863         321 TSAKLIAPSIEDNFSNGYNWCVQSIRNS---------AHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATN  391 (425)
Q Consensus       321 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  391 (425)
                      ++++..|.+.......+......+....         ...+....++..++.++...|++++|+..|+++.+..|..   
T Consensus       320 ~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---  396 (899)
T TIGR02917       320 QILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPEN---  396 (899)
T ss_pred             HHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---
Confidence            8888888776555444432222211111         1122234556667777788888888888777775554332   


Q ss_pred             hhHHHHHhhhccCcCCCCcHHHHHHhHhHH
Q psy1863         392 LSFIYFLVSSEFQYLPTSEVPIYLENLLTV  421 (425)
Q Consensus       392 l~~~~~l~~~~~~~~~~~ea~~~~~~~l~~  421 (425)
                      ......+...........++...++++++.
T Consensus       397 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  426 (899)
T TIGR02917       397 AAARTQLGISKLSQGDPSEAIADLETAAQL  426 (899)
T ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHhh
Confidence            222222222222333455566666655543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.94  E-value=1.9e-23  Score=219.38  Aligned_cols=202  Identities=18%  Similarity=0.154  Sum_probs=154.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM  211 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  211 (425)
                      ...+..+|.++...|++++|+.+|++++   |..+.++..+|.++...|++++|+..|++++..+|.+..++..++.++.
T Consensus       465 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  544 (899)
T TIGR02917       465 ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYL  544 (899)
T ss_pred             cHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            3456677888888888888888888776   7777777888888888888888888888888888888778888888887


Q ss_pred             HhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy1863         212 AREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVN  291 (425)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  291 (425)
                      ..|++++|+..+++++..+|.+...+..++.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..|
T Consensus       545 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  624 (899)
T TIGR02917       545 RTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSF  624 (899)
T ss_pred             HcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            78888888888888877777777777777777777778888888777777777777777777777777778888888777


Q ss_pred             HHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhch
Q psy1863         292 ENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNG  337 (425)
Q Consensus       292 ~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~  337 (425)
                      ++ +++..|+++  +..++.+     ++++|...++++++..|.+...+...+
T Consensus       625 ~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  676 (899)
T TIGR02917       625 KK-LLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLA  676 (899)
T ss_pred             HH-HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            77 777777766  5555555     777777777777777777665554443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.94  E-value=1.5e-23  Score=209.55  Aligned_cols=319  Identities=10%  Similarity=-0.013  Sum_probs=239.8

Q ss_pred             HHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHHHH
Q psy1863          16 IGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEA   95 (425)
Q Consensus        16 ~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~   95 (425)
                      ..+.--+..++.+|++++|+..++..+...        |.+....+.+++.....|++.                   .+
T Consensus        43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--------p~~~~~l~~l~~~~l~~g~~~-------------------~A   95 (656)
T PRK15174         43 QNIILFAIACLRKDETDVGLTLLSDRVLTA--------KNGRDLLRRWVISPLASSQPD-------------------AV   95 (656)
T ss_pred             cCHHHHHHHHHhcCCcchhHHHhHHHHHhC--------CCchhHHHHHhhhHhhcCCHH-------------------HH
Confidence            346666778899999999999998887766        667677777777776666544                   22


Q ss_pred             HHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHH
Q psy1863          96 EKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNL  172 (425)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l  172 (425)
                      ...+..+...                         .+...+.+..+|.++...|++++|+..|++++   |.++.++..+
T Consensus        96 ~~~l~~~l~~-------------------------~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~l  150 (656)
T PRK15174         96 LQVVNKLLAV-------------------------NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALH  150 (656)
T ss_pred             HHHHHHHHHh-------------------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            2222222111                         11123445788889999999999999999988   8888899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-CcHHHHHHHHHHHHHcCCHH
Q psy1863         173 SFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDA-TCIEALYNLGLAHKHLNEYS  251 (425)
Q Consensus       173 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~  251 (425)
                      |.++...|++++|+..+++++...|+++.++..++ .+...|++++|+..+++++..+| ........++.++...|+++
T Consensus       151 a~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~  229 (656)
T PRK15174        151 LRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQ  229 (656)
T ss_pred             HHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHH
Confidence            99999999999999999988888898888877664 47888999999999999888875 33445566688888999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHH
Q psy1863         252 DSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQ----ASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCIL  320 (425)
Q Consensus       252 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~----A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~  320 (425)
                      +|+..+.+++...|+++.++..+|.++...|++++    |+..|++ ++..+|+++  +..+|.+     ++++|+..++
T Consensus       230 eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~-Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~  308 (656)
T PRK15174        230 EAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH-ALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQ  308 (656)
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH-HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            99999999999999999999999999999999885    7899999 999999888  6777776     8889999999


Q ss_pred             HHHhhcCCchhhHhhchHHHHHHHhHHhhc---------hhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCC
Q psy1863         321 TSAKLIAPSIEDNFSNGYNWCVQSIRNSAH---------SSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSA  388 (425)
Q Consensus       321 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  388 (425)
                      +++...|.+......+|..+...+....+.         .+........+|.++...|++++|+..|+++.+..|..
T Consensus       309 ~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~  385 (656)
T PRK15174        309 QSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH  385 (656)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence            999998888766665553333222222211         11122334456777888888888888888886666554

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.94  E-value=2.1e-23  Score=221.98  Aligned_cols=360  Identities=13%  Similarity=0.064  Sum_probs=253.3

Q ss_pred             hhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHHHHHHHHHH
Q psy1863          22 SCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEAEKCILT  101 (425)
Q Consensus        22 ~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~~~~  101 (425)
                      +..+...|++++|+..+++++...        |........++..|...|++.                   ++...+..
T Consensus       276 G~~~~~~g~~~~A~~~l~~aL~~~--------P~~~~a~~~Lg~~~~~~g~~~-------------------eA~~~l~~  328 (1157)
T PRK11447        276 GLAAVDSGQGGKAIPELQQAVRAN--------PKDSEALGALGQAYSQQGDRA-------------------RAVAQFEK  328 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHH-------------------HHHHHHHH
Confidence            667788999999999999999877        655556667777777666654                   33333333


Q ss_pred             hhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHH
Q psy1863         102 SAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFL  178 (425)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~  178 (425)
                      +.+.- |....    ...| ...+..     ......+..|..+...|++++|+..|++++   |.++.++..+|.++..
T Consensus       329 Al~~~-p~~~~----~~~~-~~ll~~-----~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~  397 (1157)
T PRK11447        329 ALALD-PHSSN----RDKW-ESLLKV-----NRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMA  397 (1157)
T ss_pred             HHHhC-CCccc----hhHH-HHHHHh-----hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            32221 11000    0000 000000     001122456778888888888888888888   7778888888888888


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHH------------------------------------------HHHHhcCH
Q psy1863         179 QGEVEQAEKMAEEACTADTYNSAAFVNLGN------------------------------------------CAMAREDY  216 (425)
Q Consensus       179 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~------------------------------------------~~~~~g~~  216 (425)
                      .|++++|+..|+++++.+|++..++..++.                                          ++...|++
T Consensus       398 ~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~  477 (1157)
T PRK11447        398 RKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKW  477 (1157)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCH
Confidence            888888888888888888888766555444                                          44467899


Q ss_pred             HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy1863         217 VKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLL  296 (425)
Q Consensus       217 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~  296 (425)
                      ++|+..|+++++.+|+++.+++.+|.+|...|++++|+..+++++...|+++.+++.++..+...|++++|+..+++ +.
T Consensus       478 ~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~-l~  556 (1157)
T PRK11447        478 AQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNT-LP  556 (1157)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHh-CC
Confidence            99999999999999999999999999999999999999999999999999998888888887788888888777654 31


Q ss_pred             ----------------------------------------hcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCc
Q psy1863         297 ----------------------------------------EAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPS  329 (425)
Q Consensus       297 ----------------------------------------~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~  329 (425)
                                                              +..|.++  +..++.+     ++++|+..|+++++..|.+
T Consensus       557 ~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~  636 (1157)
T PRK11447        557 RAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGN  636 (1157)
T ss_pred             chhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence                                                    2245555  5556655     8999999999999999999


Q ss_pred             hhhHhhchHHHHHHHhHHhhc---------hhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccch---hHHHH
Q psy1863         330 IEDNFSNGYNWCVQSIRNSAH---------SSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNL---SFIYF  397 (425)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---~~~~~  397 (425)
                      ......++..+...+....+.         .+.....+..+|.++...|++++|++.++++....+..+...   .....
T Consensus       637 ~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~  716 (1157)
T PRK11447        637 ADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRD  716 (1157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHH
Confidence            888777765443332222222         223445677789999999999999999999977665544311   11111


Q ss_pred             HhhhccCcCCCCcHHHHHHhHhH
Q psy1863         398 LVSSEFQYLPTSEVPIYLENLLT  420 (425)
Q Consensus       398 l~~~~~~~~~~~ea~~~~~~~l~  420 (425)
                      +...........+|+.++++++.
T Consensus       717 ~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        717 AARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHh
Confidence            11223333467788888888864

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.93  E-value=5e-23  Score=206.16  Aligned_cols=284  Identities=15%  Similarity=0.049  Sum_probs=208.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHH-----------------------
Q psy1863         136 DLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMA-----------------------  189 (425)
Q Consensus       136 ~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~-----------------------  189 (425)
                      ..+.++|.++...|++++|+..+.+++   |....+++.+|.+|..+|++++|+..|                       
T Consensus       161 ~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~  240 (615)
T TIGR00990       161 VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK  240 (615)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence            456777888888888888888888877   777777777777777777777775433                       


Q ss_pred             -----------------------------------------------------------------------------HHH
Q psy1863         190 -----------------------------------------------------------------------------EEA  192 (425)
Q Consensus       190 -----------------------------------------------------------------------------~~a  192 (425)
                                                                                                   +++
T Consensus       241 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~a  320 (615)
T TIGR00990       241 KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKA  320 (615)
T ss_pred             HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence                                                                                         233


Q ss_pred             Hhc---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy1863         193 CTA---DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPE  269 (425)
Q Consensus       193 l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  269 (425)
                      +..   .|....++..+|.++..+|++++|+..|++++.++|++..++..+|.++...|++++|+..|+++++.+|+++.
T Consensus       321 l~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~  400 (615)
T TIGR00990       321 LDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD  400 (615)
T ss_pred             HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            322   24455667888888888999999999999999999998889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHH
Q psy1863         270 VLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCV  342 (425)
Q Consensus       270 ~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  342 (425)
                      +++.+|.++...|++++|+.+|++ +++++|++.  +..+|.+     ++++|+..++++++..|.+...+...|..+..
T Consensus       401 ~~~~lg~~~~~~g~~~~A~~~~~k-al~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~  479 (615)
T TIGR00990       401 IYYHRAQLHFIKGEFAQAGKDYQK-SIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLD  479 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHH-HHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            999999999999999999999999 999999887  6677776     78899999999999888888777777655444


Q ss_pred             HHhHHhhchhhh---------c------HHHHHHHH-HHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcC
Q psy1863         343 QSIRNSAHSSLA---------Q------DLEINKAV-TFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYL  406 (425)
Q Consensus       343 ~~~~~~~~~~~~---------~------~~~~~la~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~  406 (425)
                      .+....+...+.         .      ..++..+. ++...|++++|+..++++.+..|...   .....+....+...
T Consensus       480 ~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~---~a~~~la~~~~~~g  556 (615)
T TIGR00990       480 QNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD---IAVATMAQLLLQQG  556 (615)
T ss_pred             ccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcc
Confidence            333322222111         1      11222233 33446899999999988876654433   22333333344445


Q ss_pred             CCCcHHHHHHhHhHHhh
Q psy1863         407 PTSEVPIYLENLLTVLQ  423 (425)
Q Consensus       407 ~~~ea~~~~~~~l~~~~  423 (425)
                      ..++|+.++++++++..
T Consensus       557 ~~~eAi~~~e~A~~l~~  573 (615)
T TIGR00990       557 DVDEALKLFERAAELAR  573 (615)
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            78888899988877643

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.93  E-value=7.6e-23  Score=217.64  Aligned_cols=278  Identities=16%  Similarity=0.159  Sum_probs=217.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH--------------H
Q psy1863         140 NKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSA--------------A  202 (425)
Q Consensus       140 ~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~  202 (425)
                      .+|..+...|++++|+..|++++   |.++.++..+|.++...|++++|+.+|+++++.+|++..              .
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~  353 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL  353 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence            45889999999999999999999   889999999999999999999999999999999997653              1


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-----
Q psy1863         203 FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASL-----  277 (425)
Q Consensus       203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-----  277 (425)
                      ...+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+.+|+++++.+|++..++..++.+     
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~  433 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS  433 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence            245688899999999999999999999999999999999999999999999999999999999988776655544     


Q ss_pred             -------------------------------------HHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHH
Q psy1863         278 -------------------------------------YEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKH  313 (425)
Q Consensus       278 -------------------------------------~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~  313 (425)
                                                           +...|++++|+..|++ +++.+|+++  +..++.+     +++
T Consensus       434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~-Al~~~P~~~~~~~~LA~~~~~~G~~~  512 (1157)
T PRK11447        434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQ-RLALDPGSVWLTYRLAQDLRQAGQRS  512 (1157)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence                                                 4467999999999999 999999998  6677766     999


Q ss_pred             HHHHHHHHHHhhcCCchhhHhhchHHHHH--------HHhH------------------------------------H--
Q psy1863         314 EAEKCILTSAKLIAPSIEDNFSNGYNWCV--------QSIR------------------------------------N--  347 (425)
Q Consensus       314 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~--------~~~~------------------------------------~--  347 (425)
                      +|+..++++++..|.+....+..+.....        ..+.                                    .  
T Consensus       513 ~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA  592 (1157)
T PRK11447        513 QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA  592 (1157)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence            99999999999999887765544321100        0000                                    0  


Q ss_pred             ---hhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcCCCCcHHHHHHhHhHH
Q psy1863         348 ---SAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLTV  421 (425)
Q Consensus       348 ---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~~  421 (425)
                         ....+.....++.+|.++...|++++|+..|+++....|.++.   ....+...........+|..+++++++.
T Consensus       593 ~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~---a~~~la~~~~~~g~~~eA~~~l~~ll~~  666 (1157)
T PRK11447        593 EALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNAD---ARLGLIEVDIAQGDLAAARAQLAKLPAT  666 (1157)
T ss_pred             HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence               0011223446677888888888888888888888766554433   2222222233333566666666666544

>KOG0547|consensus

Probab=99.93  E-value=1e-23  Score=189.00  Aligned_cols=237  Identities=14%  Similarity=0.122  Sum_probs=190.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM  211 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  211 (425)
                      .+.+...|..++-.|+.-.|...|+.++   |.....|..+|.+|....+.++....|.+|.+++|.++++|+..|.+++
T Consensus       326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f  405 (606)
T KOG0547|consen  326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF  405 (606)
T ss_pred             HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH
Confidence            3445566777888888888888888888   5555668888888888888888888888888888888888888888888


Q ss_pred             HhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy1863         212 AREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVN  291 (425)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  291 (425)
                      -++++++|+.-|++++.++|++..++..++.+.++++++++++..|+.+.+..|+.++++...|.++..++++++|++.|
T Consensus       406 lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~Y  485 (606)
T KOG0547|consen  406 LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQY  485 (606)
T ss_pred             HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHhcCcc------hH--HHHHHHh------hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHH
Q psy1863         292 ENLLLEAVRN------DA--LSQLHRE------MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDL  357 (425)
Q Consensus       292 ~~~a~~~~p~------~~--~~~l~~~------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (425)
                      .+ ++++.|.      ++  +.+-+.+      +...|+..+.++++++|....                         .
T Consensus       486 D~-ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~-------------------------A  539 (606)
T KOG0547|consen  486 DK-AIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQ-------------------------A  539 (606)
T ss_pred             HH-HHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHH-------------------------H
Confidence            88 8888887      33  3333333      778888888888888886543                         4


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHH
Q psy1863         358 EINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYF  397 (425)
Q Consensus       358 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~  397 (425)
                      +..+|.+-+.+|+.++|+++|++...+.....+.+....+
T Consensus       540 ~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~~~a~s~  579 (606)
T KOG0547|consen  540 YETLAQFELQRGKIDEAIELFEKSAQLARTESEMVHAYSL  579 (606)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            4557888999999999999999998777666665555554

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.92  E-value=1.8e-22  Score=201.72  Aligned_cols=319  Identities=12%  Similarity=0.021  Sum_probs=183.5

Q ss_pred             HHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHH
Q psy1863          11 MEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHRE   90 (425)
Q Consensus        11 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~   90 (425)
                      ...+.+.|...++.....|++++|++.+++++...        |.....+..++..+...|++.                
T Consensus        72 ~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--------P~~~~a~~~la~~l~~~g~~~----------------  127 (656)
T PRK15174         72 AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--------VCQPEDVLLVASVLLKSKQYA----------------  127 (656)
T ss_pred             CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCCHH----------------
Confidence            34456667777888889999999999999999887        776666777777777766654                


Q ss_pred             HHHHHHHHHHHhhhhhh------------hchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHH
Q psy1863          91 MKHEAEKCILTSAKLIA------------PSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVL  158 (425)
Q Consensus        91 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~  158 (425)
                         ++...+..+..+-+            -...+++..+...+...+...+..   ...+... ..+...|++++|+..+
T Consensus       128 ---~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~---~~a~~~~-~~l~~~g~~~eA~~~~  200 (656)
T PRK15174        128 ---TVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR---GDMIATC-LSFLNKSRLPEDHDLA  200 (656)
T ss_pred             ---HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC---HHHHHHH-HHHHHcCCHHHHHHHH
Confidence               12121111111100            000011111211111222211111   1122222 2355666666666666


Q ss_pred             Hhcc---c-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHH----HHHHHHHHHhcC
Q psy1863         159 KSCD---E-MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVK----GKELYVHALDND  230 (425)
Q Consensus       159 ~~~~---~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~  230 (425)
                      ++++   | ........++.++...|++++|+..+++++..+|+++.++..+|.++...|++++    |+..|++++..+
T Consensus       201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~  280 (656)
T PRK15174        201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN  280 (656)
T ss_pred             HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence            6655   1 2223334455666666666666666666666666666666666666666666664    566666666666


Q ss_pred             cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHH
Q psy1863         231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLH  308 (425)
Q Consensus       231 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~  308 (425)
                      |+++.++.++|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++ ++..+|+++  ...++
T Consensus       281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~-al~~~P~~~~~~~~~a  359 (656)
T PRK15174        281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQ-LAREKGVTSKWNRYAA  359 (656)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCccchHHHHHHH
Confidence            666666666666666666666666666666666666666666666666666666666666666 666666654  22222


Q ss_pred             Hh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy1863         309 RE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDE  383 (425)
Q Consensus       309 ~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  383 (425)
                      .+     ++++|+..|+++++..|...                                     ...|++|+..|.++..
T Consensus       360 ~al~~~G~~deA~~~l~~al~~~P~~~-------------------------------------~~~~~ea~~~~~~~~~  402 (656)
T PRK15174        360 AALLQAGKTSEAESVFEHYIQARASHL-------------------------------------PQSFEEGLLALDGQIS  402 (656)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhChhhc-------------------------------------hhhHHHHHHHHHHHHH
Confidence            22     66666666666666666542                                     2455677777777766


Q ss_pred             hccCCccchhHHHHH
Q psy1863         384 MTSSAATNLSFIYFL  398 (425)
Q Consensus       384 ~~~~~~~~l~~~~~l  398 (425)
                      ..+.......+..-+
T Consensus       403 ~~~~~~~~~~W~~~~  417 (656)
T PRK15174        403 AVNLPPERLDWAWEV  417 (656)
T ss_pred             hcCCccchhhHHHHH
Confidence            555544443454444

>KOG1126|consensus

Probab=99.92  E-value=9.6e-24  Score=196.41  Aligned_cols=229  Identities=16%  Similarity=0.132  Sum_probs=181.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcc-------------------------------------cchHHHHHHHHHHHHH
Q psy1863         136 DLEINKAVTFLRMNDVSQAVDVLKSCD-------------------------------------EMTSSAATNLSFIYFL  178 (425)
Q Consensus       136 ~~~~~~a~~~~~~g~~~~A~~~~~~~~-------------------------------------~~~~~~~~~lg~~~~~  178 (425)
                      .+...+|..|+..++|++|..+|+.+.                                     |..|.+|..+|.||..
T Consensus       354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL  433 (638)
T KOG1126|consen  354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSL  433 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh
Confidence            556789999999999999999998875                                     6667777778888877


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy1863         179 QGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFH  258 (425)
Q Consensus       179 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  258 (425)
                      +++++.|+++|++|+.++|....++..+|.-+....++|.|..+|++++..+|.+..+|+.+|.+|.++++++.|.-.|+
T Consensus       434 Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fq  513 (638)
T KOG1126|consen  434 QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQ  513 (638)
T ss_pred             hhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHH
Confidence            78888888888888888887777777777777777778888888888887777777788888888888888888888888


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchh
Q psy1863         259 KLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIE  331 (425)
Q Consensus       259 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~  331 (425)
                      +|+.++|.+......+|.++.++|+.++|+.+|++ |+.++|.++  .+..+.+     ++++|...+++.-.+.|+.. 
T Consensus       514 kA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~-A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es-  591 (638)
T KOG1126|consen  514 KAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEK-AIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQES-  591 (638)
T ss_pred             hhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHH-HHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchH-
Confidence            88888887777777777777778888888888887 777777777  3333443     77777777777777766654 


Q ss_pred             hHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcc
Q psy1863         332 DNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT  390 (425)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~  390 (425)
                                              .++..+|.+|.++|+.+.|+..|--+..+.|...+
T Consensus       592 ------------------------~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  592 ------------------------SVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             ------------------------HHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence                                    45556789999999999999999998888877665

>KOG2002|consensus

Probab=99.91  E-value=1.1e-21  Score=189.38  Aligned_cols=403  Identities=15%  Similarity=0.151  Sum_probs=250.9

Q ss_pred             HHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCC-Ccccccchhcchhhhhcc-------hhhcccc
Q psy1863          11 MEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGH-ADSHNIELTFSNINRKKN-------ARAVRND   82 (425)
Q Consensus        11 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~-~~~~~l~~~~~~~~~~~~-------~~~~~~d   82 (425)
                      -...|=.|+..|+..+..|+|.+|+..|+.|+.+.        |... .....+|..+.++|+..-       +.-+...
T Consensus       160 sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~in--------p~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~  231 (1018)
T KOG2002|consen  160 SPDNILALLGKARIAYNKKDYRGALKYYKKALRIN--------PACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPT  231 (1018)
T ss_pred             CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcC--------cccCCCccchhhhHHHhccchhhHHHHHHHHHhcChh
Confidence            34457789999999999999999999999998877        4433 334455555555554330       1111111


Q ss_pred             h------hHHHHHHHH--HHHHHHHHHhhhhhh-----hc----hhhh-h-hhhHHHHHH----HHHhcCCcchhhHHHH
Q psy1863          83 A------LSQLHREMK--HEAEKCILTSAKLIA-----PS----IEDN-F-SNGYNWCVQ----SIRNSAHSSLAQDLEI  139 (425)
Q Consensus        83 ~------l~~~~~~~~--~~~~~~~~~~~~~~~-----~~----~~~~-~-~~~~~~~~~----~~~~~~~~~~~~~~~~  139 (425)
                      .      |..+.....  ......+....+.+.     |.    +... | ...|..+..    .+.......+.++.++
T Consensus       232 ~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y  311 (1018)
T KOG2002|consen  232 CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFY  311 (1018)
T ss_pred             hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            1      111111100  000000111111110     10    1111 1 112332222    2333444456677889


Q ss_pred             HHHHHHHHcCCHHHHHHHHHhcc---cch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-
Q psy1863         140 NKAVTFLRMNDVSQAVDVLKSCD---EMT-SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE-  214 (425)
Q Consensus       140 ~~a~~~~~~g~~~~A~~~~~~~~---~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-  214 (425)
                      .+|..+..+|+|++|..+|.+++   +++ .-.++.+|.+|...|+++.|+.+|+++++..|++..+...+|.+|...+ 
T Consensus       312 ~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~  391 (1018)
T KOG2002|consen  312 QLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAK  391 (1018)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhh
Confidence            99999999999999999999998   444 6778899999999999999999999999998888777777777776654 


Q ss_pred             ---CHHHHHHHHHHHHhcCcCc--------------------------------------HHHHHHHHHHHHHcCCHHHH
Q psy1863         215 ---DYVKGKELYVHALDNDATC--------------------------------------IEALYNLGLAHKHLNEYSDS  253 (425)
Q Consensus       215 ---~~~~A~~~~~~al~~~~~~--------------------------------------~~~~~~la~~~~~~g~~~~A  253 (425)
                         ..+.|..+..+++...|.+                                      +..++++|..++..|++++|
T Consensus       392 ~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A  471 (1018)
T KOG2002|consen  392 KQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKA  471 (1018)
T ss_pred             hhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHH
Confidence               4555666666655554333                                      34556788888888888888


Q ss_pred             HHHHHHHHhh-----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHH
Q psy1863         254 LECFHKLQAI-----VPSM-----PEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAE  316 (425)
Q Consensus       254 ~~~~~~al~~-----~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~  316 (425)
                      ...|..++..     +++.     ....+++|.++..+++++.|.+.|.. .++.+|+..  +..++.+     ...+|.
T Consensus       472 ~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~-Ilkehp~YId~ylRl~~ma~~k~~~~ea~  550 (1018)
T KOG2002|consen  472 LEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKS-ILKEHPGYIDAYLRLGCMARDKNNLYEAS  550 (1018)
T ss_pred             HHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHH-HHHHCchhHHHHHHhhHHHHhccCcHHHH
Confidence            8888777765     1221     23567777777777777777777777 776666554  3333311     444444


Q ss_pred             HHHHHHHhhcCCchh-----------------------------------------------------------------
Q psy1863         317 KCILTSAKLIAPSIE-----------------------------------------------------------------  331 (425)
Q Consensus       317 ~~~~~a~~~~~~~~~-----------------------------------------------------------------  331 (425)
                      ..+..++..+..++.                                                                 
T Consensus       551 ~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~K  630 (1018)
T KOG2002|consen  551 LLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEK  630 (1018)
T ss_pred             HHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHH
Confidence            455555444444444                                                                 


Q ss_pred             -----------------hHhhchHHHHHHHhHHhhchhh---------hcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy1863         332 -----------------DNFSNGYNWCVQSIRNSAHSSL---------AQDLEINKAVTFLRMNDVSQAVDVLKSCDEMT  385 (425)
Q Consensus       332 -----------------~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  385 (425)
                                       .....|......+....+...+         ..++|+++|.||+.+|+|..|++.|+.+.+..
T Consensus       631 Alq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf  710 (1018)
T KOG2002|consen  631 ALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKF  710 (1018)
T ss_pred             HHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                             3333332222111111111111         34788999999999999999999999997655


Q ss_pred             cCCccchhHHHHHhhhccCcCCCCcHHHHHHhHhHHhh
Q psy1863         386 SSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLTVLQ  423 (425)
Q Consensus       386 ~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~  423 (425)
                      . ..++..++.+|....+......++.+++.+++.+.|
T Consensus       711 ~-~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p  747 (1018)
T KOG2002|consen  711 Y-KKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP  747 (1018)
T ss_pred             c-ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence            5 345566777777777777777788888877776654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.91  E-value=1.1e-20  Score=179.53  Aligned_cols=220  Identities=14%  Similarity=0.081  Sum_probs=136.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcc--cc-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCD--EM-----TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM  211 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~--~~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  211 (425)
                      ..+|..+...|++++|+..+++++  +.     ...++..+|.+|...|++++|+..|+++++.+|.+..++..++.++.
T Consensus        73 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~  152 (389)
T PRK11788         73 LALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQ  152 (389)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence            455666666666666666666655  11     12455666666666666666666666666666666666666666666


Q ss_pred             HhcCHHHHHHHHHHHHhcCcCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy1863         212 AREDYVKGKELYVHALDNDATC-----IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQ  286 (425)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  286 (425)
                      ..|++++|+..++++++..|.+     ...+..+|.++...|++++|+..|+++++..|+...++..+|.++...|++++
T Consensus       153 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  232 (389)
T PRK11788        153 QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAA  232 (389)
T ss_pred             HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHH
Confidence            6666666666666666665543     22345566666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHhcCcchH---HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHH
Q psy1863         287 ASDVNENLLLEAVRNDA---LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLE  358 (425)
Q Consensus       287 A~~~~~~~a~~~~p~~~---~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (425)
                      |+..+++ +...+|.+.   +..++.+     +.++|...++++++..|+..                          ..
T Consensus       233 A~~~~~~-~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~--------------------------~~  285 (389)
T PRK11788        233 AIEALER-VEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD--------------------------LL  285 (389)
T ss_pred             HHHHHHH-HHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch--------------------------HH
Confidence            6666666 666666543   3334333     66666666666666555321                          11


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy1863         359 INKAVTFLRMNDVSQAVDVLKSCDEMT  385 (425)
Q Consensus       359 ~~la~~~~~~g~~~~A~~~~~~~~~~~  385 (425)
                      ..++.++...|++++|+..++++.+..
T Consensus       286 ~~la~~~~~~g~~~~A~~~l~~~l~~~  312 (389)
T PRK11788        286 LALAQLLEEQEGPEAAQALLREQLRRH  312 (389)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            334566666677777777666664443

>KOG1126|consensus

Probab=99.89  E-value=1.4e-21  Score=182.16  Aligned_cols=288  Identities=16%  Similarity=0.115  Sum_probs=230.5

Q ss_pred             HHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHH
Q psy1863          13 QEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMK   92 (425)
Q Consensus        13 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~   92 (425)
                      ..+...+..+.+...+=+.++|+..|.+ +              ...+.|.+++..++|+.+            ++....
T Consensus       317 ~~llr~~~~~~~~~s~y~~~~A~~~~~k-l--------------p~h~~nt~wvl~q~Gray------------FEl~~Y  369 (638)
T KOG1126|consen  317 MELLRGLGEGYRSLSQYNCREALNLFEK-L--------------PSHHYNTGWVLSQLGRAY------------FELIEY  369 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--------------HHhcCCchHHHHHHHHHH------------HHHHHH
Confidence            3456667778888888888888888755 2              123445556666666543            222333


Q ss_pred             HHHHHHHHHhhhhhhhchhh-hhhhhHH-----------HHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy1863          93 HEAEKCILTSAKLIAPSIED-NFSNGYN-----------WCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKS  160 (425)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~  160 (425)
                      .+++.++..+-+.-.-.+.+ ++...--           -+.+.+..   .+...+.|-.+|+++..+++++.|+++|++
T Consensus       370 ~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~---~~~sPesWca~GNcfSLQkdh~~Aik~f~R  446 (638)
T KOG1126|consen  370 DQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDT---DPNSPESWCALGNCFSLQKDHDTAIKCFKR  446 (638)
T ss_pred             HHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhh---CCCCcHHHHHhcchhhhhhHHHHHHHHHHH
Confidence            34444443332221111111 1111000           11222222   233456778899999999999999999999


Q ss_pred             cc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHH
Q psy1863         161 CD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEAL  237 (425)
Q Consensus       161 ~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  237 (425)
                      ++   |..+.+|..+|--+....++|.|..+|++|+..+|.+..+|+.+|.+|.++++++.|.-+|++|+.++|.+....
T Consensus       447 AiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~  526 (638)
T KOG1126|consen  447 AIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVIL  526 (638)
T ss_pred             hhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHH
Confidence            99   888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----
Q psy1863         238 YNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----  310 (425)
Q Consensus       238 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----  310 (425)
                      ..+|.++.++|+.++|+..|++|+.++|.++-..+..|.++..++++++|+..+++ ..++.|++.  +..+|.+     
T Consensus       527 ~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEe-Lk~~vP~es~v~~llgki~k~~~  605 (638)
T KOG1126|consen  527 CHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEE-LKELVPQESSVFALLGKIYKRLG  605 (638)
T ss_pred             hhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHH-HHHhCcchHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999 999999998  7788887     


Q ss_pred             hHHHHHHHHHHHHhhcCCchh
Q psy1863         311 MKHEAEKCILTSAKLIAPSIE  331 (425)
Q Consensus       311 ~~~~A~~~~~~a~~~~~~~~~  331 (425)
                      +.+.|+..|.-+.+++|....
T Consensus       606 ~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  606 NTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             cchHHHHhhHHHhcCCCccch
Confidence            889999999999999997655

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.88  E-value=2.3e-19  Score=183.83  Aligned_cols=198  Identities=10%  Similarity=0.018  Sum_probs=178.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q psy1863         138 EINKAVTFLRMNDVSQAVDVLKSCD--EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARED  215 (425)
Q Consensus       138 ~~~~a~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  215 (425)
                      .+.+|..+...|++++|+..|+++.  +.....+..+|.++...|++++|+.+++++++.+|.+......++......|+
T Consensus       512 ~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr  591 (987)
T PRK09782        512 HRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQ  591 (987)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCC
Confidence            4666778889999999999999887  44556688899999999999999999999999999998888877777778899


Q ss_pred             HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863         216 YVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLL  295 (425)
Q Consensus       216 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a  295 (425)
                      +++|+..|+++++.+|+ +.++.++|.++.+.|++++|+..|++++..+|+++.++.++|.++...|++++|+..|++ +
T Consensus       592 ~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~-A  669 (987)
T PRK09782        592 PELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLER-A  669 (987)
T ss_pred             HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH-H
Confidence            99999999999999997 889999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhch
Q psy1863         296 LEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNG  337 (425)
Q Consensus       296 ~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~  337 (425)
                      ++.+|+++  +.++|.+     ++++|+.+++++++..|.........|
T Consensus       670 L~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g  718 (987)
T PRK09782        670 HKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTP  718 (987)
T ss_pred             HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhh
Confidence            99999999  7788887     899999999999999998876666555

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.87  E-value=1.8e-19  Score=171.32  Aligned_cols=256  Identities=14%  Similarity=0.119  Sum_probs=213.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHH
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN----SAAFVNLGNCAM  211 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~  211 (425)
                      +..|..+...|++++|+..|.+++   |.++.++..+|.++...|++++|+..+++++...+..    ..++..+|.++.
T Consensus        39 y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~  118 (389)
T PRK11788         39 YFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL  118 (389)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            566889999999999999999999   8888999999999999999999999999998864333    356899999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHcCCHHH
Q psy1863         212 AREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMP-----EVLYQIASLYEITGDVEQ  286 (425)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~  286 (425)
                      ..|++++|+..|+++++.+|.+..++..++.++...|++++|++.++++++..|...     ..+..+|.++...|++++
T Consensus       119 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  198 (389)
T PRK11788        119 KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA  198 (389)
T ss_pred             HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence            999999999999999999999999999999999999999999999999999888653     256789999999999999


Q ss_pred             HHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHH
Q psy1863         287 ASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEI  359 (425)
Q Consensus       287 A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (425)
                      |+..|++ +++..|++.  +..++.+     ++++|...++++....|....                        ..+.
T Consensus       199 A~~~~~~-al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~------------------------~~~~  253 (389)
T PRK11788        199 ARALLKK-ALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS------------------------EVLP  253 (389)
T ss_pred             HHHHHHH-HHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH------------------------HHHH
Confidence            9999999 999999877  6666666     899999999999987665321                        2345


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcCCCCcHHHHHHhHhHHhh
Q psy1863         360 NKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLTVLQ  423 (425)
Q Consensus       360 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~  423 (425)
                      .++.+|...|++++|+..++++.+..|..+.    ...+..........++|..+++++++..|
T Consensus       254 ~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~----~~~la~~~~~~g~~~~A~~~l~~~l~~~P  313 (389)
T PRK11788        254 KLMECYQALGDEAEGLEFLRRALEEYPGADL----LLALAQLLEEQEGPEAAQALLREQLRRHP  313 (389)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCchH----HHHHHHHHHHhCCHHHHHHHHHHHHHhCc
Confidence            5788899999999999999999777654322    12222223333467788888888877644

>KOG1155|consensus

Probab=99.87  E-value=3.8e-19  Score=159.00  Aligned_cols=224  Identities=17%  Similarity=0.148  Sum_probs=162.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcc---c----------------------------------chHHHHHHHHHHHHHcCC
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCD---E----------------------------------MTSSAATNLSFIYFLQGE  181 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~---~----------------------------------~~~~~~~~lg~~~~~~g~  181 (425)
                      ...|.+...+.||++|+..|+.+.   |                                  -.+++..-+|+.|...++
T Consensus       266 ~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~e  345 (559)
T KOG1155|consen  266 TQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSE  345 (559)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHh
Confidence            456777888888888888888876   1                                  122333344556666777


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863         182 VEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQ  261 (425)
Q Consensus       182 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  261 (425)
                      .++|+.+|++|++++|....+|..+|.-|..+++...|+..|++|++++|.+..+|+.+|.+|--++...=|+-+|++|+
T Consensus       346 HEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~  425 (559)
T KOG1155|consen  346 HEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL  425 (559)
T ss_pred             HHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH
Confidence            78888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHh
Q psy1863         262 AIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNF  334 (425)
Q Consensus       262 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~  334 (425)
                      ...|+++..|..||.||.++++.++|+.+|.+ ++.....+.  +..+|.+     +..+|..+|++.++...       
T Consensus       426 ~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykr-ai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~-------  497 (559)
T KOG1155|consen  426 ELKPNDSRLWVALGECYEKLNRLEEAIKCYKR-AILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSE-------  497 (559)
T ss_pred             hcCCCchHHHHHHHHHHHHhccHHHHHHHHHH-HHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------
Confidence            88888888888888888888888888888888 777765544  7777776     77777777777655320       


Q ss_pred             hchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy1863         335 SNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSC  381 (425)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  381 (425)
                                 ......+-...+...+|.-+.+++++++|..+...+
T Consensus       498 -----------~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~  533 (559)
T KOG1155|consen  498 -----------LEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV  533 (559)
T ss_pred             -----------hhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence                       001111222334445888888888888888766665

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.86  E-value=3.3e-19  Score=182.67  Aligned_cols=197  Identities=13%  Similarity=0.066  Sum_probs=179.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy1863         138 EINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE  214 (425)
Q Consensus       138 ~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  214 (425)
                      ++.+|..+...|++++|+.+|++++   |.....+..++......|++++|+..++++++.+|+ +.++.++|.++.+.|
T Consensus       545 ~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG  623 (987)
T PRK09782        545 LLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRH  623 (987)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCC
Confidence            4678999999999999999999999   666666667777777789999999999999999996 999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863         215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENL  294 (425)
Q Consensus       215 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  294 (425)
                      ++++|+..|++++.++|+++.++.++|.++...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+.+|++ 
T Consensus       624 ~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~-  702 (987)
T PRK09782        624 NVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARL-  702 (987)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhch
Q psy1863         295 LLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNG  337 (425)
Q Consensus       295 a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~  337 (425)
                      +++..|++.  ....|.+     ++..|.+.+.+.....|... .....|
T Consensus       703 Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~~~~g  751 (987)
T PRK09782        703 VIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IGLRSG  751 (987)
T ss_pred             HHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hccccc
Confidence            999999987  4455555     78899999999999998887 444444

>KOG2002|consensus

Probab=99.85  E-value=3e-18  Score=165.79  Aligned_cols=285  Identities=17%  Similarity=0.172  Sum_probs=177.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcc----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy1863         138 EINKAVTFLRMNDVSQAVDVLKSCD----EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAR  213 (425)
Q Consensus       138 ~~~~a~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  213 (425)
                      ++..|.+.+..|+|-.|+.+|++++    ...++....+|.|++.+|+.+.|+..|.++++++|.+..++..||.+-...
T Consensus       167 LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~  246 (1018)
T KOG2002|consen  167 LLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNF  246 (1018)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHc
Confidence            4677888888999999999999987    334566677888888888888888888888888777666665555554433


Q ss_pred             c---CHHHHHHHHHHHHhcCcCcHHH-------------------------------------HHHHHHHHHHcCCHHHH
Q psy1863         214 E---DYVKGKELYVHALDNDATCIEA-------------------------------------LYNLGLAHKHLNEYSDS  253 (425)
Q Consensus       214 g---~~~~A~~~~~~al~~~~~~~~~-------------------------------------~~~la~~~~~~g~~~~A  253 (425)
                      .   .+..+...+.++...+|.+|.+                                     ++.+|.+|..+|+|++|
T Consensus       247 ~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA  326 (1018)
T KOG2002|consen  247 NDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKA  326 (1018)
T ss_pred             cchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHH
Confidence            2   2444555555555555555444                                     45555555555555555


Q ss_pred             HHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh---------hHHHHHHHHHH
Q psy1863         254 LECFHKLQAIVPSM-PEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE---------MKHEAEKCILT  321 (425)
Q Consensus       254 ~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~---------~~~~A~~~~~~  321 (425)
                      ..+|.++++.+|++ .-.++.+|..|...|+++.|+.+|++ .++..|++.  +.-||.+         ..++|..+..+
T Consensus       327 ~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEk-v~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K  405 (1018)
T KOG2002|consen  327 FKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEK-VLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGK  405 (1018)
T ss_pred             HHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHH-HHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence            55555555555554 44555555555555555555555555 555555555  3334433         22455555555


Q ss_pred             HHhhcCCchhhHhhchHHHHHHHhH-------------HhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----
Q psy1863         322 SAKLIAPSIEDNFSNGYNWCVQSIR-------------NSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEM----  384 (425)
Q Consensus       322 a~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----  384 (425)
                      +++..|.+...+..+++.+......             ........+++..++|..++..|++.+|...++.+...    
T Consensus       406 ~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~  485 (1018)
T KOG2002|consen  406 VLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV  485 (1018)
T ss_pred             HHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence            5555555555555444322211000             11112234567778999999999999999999998643    


Q ss_pred             -ccCC--ccchhHHHHHhhhccCcCCCCcHHHHHHhHhHHhh
Q psy1863         385 -TSSA--ATNLSFIYFLVSSEFQYLPTSEVPIYLENLLTVLQ  423 (425)
Q Consensus       385 -~~~~--~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~  423 (425)
                       .+..  ..++...|.+-...-..+.+..|.+.+..+++..|
T Consensus       486 ~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp  527 (1018)
T KOG2002|consen  486 ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP  527 (1018)
T ss_pred             cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc
Confidence             1111  24455666664444444578888888888887765

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.85  E-value=6.3e-19  Score=144.46  Aligned_cols=201  Identities=20%  Similarity=0.195  Sum_probs=179.4

Q ss_pred             cchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy1863         131 SSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLG  207 (425)
Q Consensus       131 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  207 (425)
                      ...+.+..+.+|.-|+..|++..|...+++++   |....+|..++.+|...|+.+.|.+.|++|++++|++.++++|.|
T Consensus        31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG  110 (250)
T COG3063          31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG  110 (250)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhh
Confidence            34567888999999999999999999999999   999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhc--CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q psy1863         208 NCAMAREDYVKGKELYVHALDN--DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVE  285 (425)
Q Consensus       208 ~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  285 (425)
                      ..++.+|++++|...|++++..  .|..+.++.|+|.|..+.|+++.|..+|++++..+|+++.+...++..++..|++-
T Consensus       111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~  190 (250)
T COG3063         111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYA  190 (250)
T ss_pred             HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccch
Confidence            9999999999999999999975  45668899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcchH---HH--HHHHh--hHHHHHHHHHHHHhhcCCchhh
Q psy1863         286 QASDVNENLLLEAVRNDA---LS--QLHRE--MKHEAEKCILTSAKLIAPSIED  332 (425)
Q Consensus       286 ~A~~~~~~~a~~~~p~~~---~~--~l~~~--~~~~A~~~~~~a~~~~~~~~~~  332 (425)
                      .|..+++. .....+-..   |.  .++..  +.+.+-.+=.+..+.+|.+.+.
T Consensus       191 ~Ar~~~~~-~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~  243 (250)
T COG3063         191 PARLYLER-YQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY  243 (250)
T ss_pred             HHHHHHHH-HHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence            99999999 766655444   22  22222  7777777777788888877653

>KOG1173|consensus

Probab=99.84  E-value=3.7e-18  Score=156.41  Aligned_cols=192  Identities=13%  Similarity=0.135  Sum_probs=176.4

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy1863         134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAA-TNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNC  209 (425)
Q Consensus       134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  209 (425)
                      ..++....+..++..++|.+..++....+   |.++.++ ..+| ++...|+..+-...-.+.++..|+.+..|+.+|..
T Consensus       243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y  321 (611)
T KOG1173|consen  243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY  321 (611)
T ss_pred             cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence            35677888999999999999999999988   6665555 4556 88999999998888899999999999999999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy1863         210 AMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASD  289 (425)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  289 (425)
                      |...|++.+|..+|.++..++|....+|...|..+...|.-++|+.+|..|-++.|.......-+|.-|..+++++-|..
T Consensus       322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~  401 (611)
T KOG1173|consen  322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEK  401 (611)
T ss_pred             HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998889999999999999999999


Q ss_pred             HHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcC
Q psy1863         290 VNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIA  327 (425)
Q Consensus       290 ~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~  327 (425)
                      +|.+ |+.+.|.+|  +..+|.+     .+.+|..+|+.++...+
T Consensus       402 Ff~~-A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik  445 (611)
T KOG1173|consen  402 FFKQ-ALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIK  445 (611)
T ss_pred             HHHH-HHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhh
Confidence            9999 999999999  7788887     88999999999985443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.84  E-value=2.4e-18  Score=150.98  Aligned_cols=194  Identities=22%  Similarity=0.260  Sum_probs=173.8

Q ss_pred             chhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy1863         132 SLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGN  208 (425)
Q Consensus       132 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  208 (425)
                      ......++.+|..+...|++++|+..+++++   |..+.++..+|.++...|++++|+..++++++..|.+..++.++|.
T Consensus        28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  107 (234)
T TIGR02521        28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT  107 (234)
T ss_pred             CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            3346777899999999999999999999998   8889999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCHHHHHHHHHHHHhcC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy1863         209 CAMAREDYVKGKELYVHALDND--ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQ  286 (425)
Q Consensus       209 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  286 (425)
                      ++...|++++|+..+++++...  |.....+.++|.++...|++++|...+.+++...|+++.++..+|.++...|++++
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999999863  45677899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhc
Q psy1863         287 ASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLI  326 (425)
Q Consensus       287 A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~  326 (425)
                      |..++++ ++...|.++  +..++.+     +.++|..+.+.+....
T Consensus       188 A~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  233 (234)
T TIGR02521       188 ARAYLER-YQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF  233 (234)
T ss_pred             HHHHHHH-HHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            9999999 999887776  4444444     6777777766665543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.84  E-value=2.8e-18  Score=155.55  Aligned_cols=218  Identities=15%  Similarity=0.037  Sum_probs=166.3

Q ss_pred             cCCHHHHHHHHHhcc-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHH
Q psy1863         148 MNDVSQAVDVLKSCD-------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGK  220 (425)
Q Consensus       148 ~g~~~~A~~~~~~~~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  220 (425)
                      .+..+.++..+.+++       +..+..++.+|.+|...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            346677777777777       3447789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCc
Q psy1863         221 ELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVR  300 (425)
Q Consensus       221 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p  300 (425)
                      ..|+++++++|++..++.++|.++...|++++|+..|+++++.+|+++..... ..+....+++++|+..+.+ +....+
T Consensus       119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~-~~~~~~  196 (296)
T PRK11189        119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQ-RYEKLD  196 (296)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHH-HHhhCC
Confidence            99999999999999999999999999999999999999999999998742221 2234567899999999988 665433


Q ss_pred             chHH-HHHHHh---hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHH
Q psy1863         301 NDAL-SQLHRE---MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVD  376 (425)
Q Consensus       301 ~~~~-~~l~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  376 (425)
                      .+.| ..+..+   +...+ ..+..+.+..+.....                  .+-..+.|+.+|.++...|++++|+.
T Consensus       197 ~~~~~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l------------------~~~~~ea~~~Lg~~~~~~g~~~~A~~  257 (296)
T PRK11189        197 KEQWGWNIVEFYLGKISEE-TLMERLKAGATDNTEL------------------AERLCETYFYLAKYYLSLGDLDEAAA  257 (296)
T ss_pred             ccccHHHHHHHHccCCCHH-HHHHHHHhcCCCcHHH------------------HHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            3221 111111   22111 1223332222221111                  11124678899999999999999999


Q ss_pred             HHHHHHhhcc
Q psy1863         377 VLKSCDEMTS  386 (425)
Q Consensus       377 ~~~~~~~~~~  386 (425)
                      .|+++....+
T Consensus       258 ~~~~Al~~~~  267 (296)
T PRK11189        258 LFKLALANNV  267 (296)
T ss_pred             HHHHHHHhCC
Confidence            9999976554

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.84  E-value=9.9e-18  Score=171.25  Aligned_cols=349  Identities=12%  Similarity=0.031  Sum_probs=227.3

Q ss_pred             HHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHHHHHH
Q psy1863          18 LIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEAEK   97 (425)
Q Consensus        18 l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~   97 (425)
                      +-.-..+..+.|++++|++.+.++...+        +.......+++..+.+.|++.                   ++..
T Consensus        18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~--------~~~a~~~~~lA~~~~~~g~~~-------------------~A~~   70 (765)
T PRK10049         18 IADWLQIALWAGQDAEVITVYNRYRVHM--------QLPARGYAAVAVAYRNLKQWQ-------------------NSLT   70 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHH-------------------HHHH
Confidence            4444567789999999998887765433        333333556666666666543                   1222


Q ss_pred             HHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHH
Q psy1863          98 CILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSF  174 (425)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~  174 (425)
                      .+..+.                      ...   +...+....+|.++...|++++|+..+++++   |.++. +..+|.
T Consensus        71 ~~~~al----------------------~~~---P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~  124 (765)
T PRK10049         71 LWQKAL----------------------SLE---PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAY  124 (765)
T ss_pred             HHHHHH----------------------HhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Confidence            111111                      110   1123344677778888888888888888887   77777 888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHH------------------------------------
Q psy1863         175 IYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVK------------------------------------  218 (425)
Q Consensus       175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~------------------------------------  218 (425)
                      ++...|++++|+..++++++..|+++.++..++.++...|..++                                    
T Consensus       125 ~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~  204 (765)
T PRK10049        125 VYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRS  204 (765)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccC
Confidence            88888888888888888888888888887777777766565554                                    


Q ss_pred             ----------HHHHHHHHHhcCcCcHH-------HHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHH
Q psy1863         219 ----------GKELYVHALDNDATCIE-------ALYN-LGLAHKHLNEYSDSLECFHKLQAIVPSMP-EVLYQIASLYE  279 (425)
Q Consensus       219 ----------A~~~~~~al~~~~~~~~-------~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~  279 (425)
                                |+..++.+++..|.++.       +... ++ .+...|++++|+..|+++++..|..+ .+...+|.+|.
T Consensus       205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl  283 (765)
T PRK10049        205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYL  283 (765)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence                      44444444443222211       2222 33 34577899999999999888865433 24444688999


Q ss_pred             HcCCHHHHHHHHHHHHHhcCcchH------HHHHHHh-----hHHHHHHHHHHHHhhcCCchh---------------hH
Q psy1863         280 ITGDVEQASDVNENLLLEAVRNDA------LSQLHRE-----MKHEAEKCILTSAKLIAPSIE---------------DN  333 (425)
Q Consensus       280 ~~g~~~~A~~~~~~~a~~~~p~~~------~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~---------------~~  333 (425)
                      .+|++++|+..|++ ++...|.++      ...+...     ++++|...++++....|....               ..
T Consensus       284 ~~g~~e~A~~~l~~-~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~  362 (765)
T PRK10049        284 KLHQPEKAQSILTE-LFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQ  362 (765)
T ss_pred             hcCCcHHHHHHHHH-HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHH
Confidence            99999999999999 888877651      3333322     899999999999888774321               11


Q ss_pred             hhchHHHH--------HHHhHH-hhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccC
Q psy1863         334 FSNGYNWC--------VQSIRN-SAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQ  404 (425)
Q Consensus       334 ~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~  404 (425)
                      ...+....        ...+.. ....|....+++.+|.++...|++++|++.++++....|   ++....+.+....++
T Consensus       363 ~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P---d~~~l~~~~a~~al~  439 (765)
T PRK10049        363 SLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEP---RNINLEVEQAWTALD  439 (765)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---CChHHHHHHHHHHHH
Confidence            11111111        111111 223444567888999999999999999999999976664   444444444444555


Q ss_pred             cCCCCcHHHHHHhHhHHhhc
Q psy1863         405 YLPTSEVPIYLENLLTVLQY  424 (425)
Q Consensus       405 ~~~~~ea~~~~~~~l~~~~~  424 (425)
                      .....+|...++.+++..|.
T Consensus       440 ~~~~~~A~~~~~~ll~~~Pd  459 (765)
T PRK10049        440 LQEWRQMDVLTDDVVAREPQ  459 (765)
T ss_pred             hCCHHHHHHHHHHHHHhCCC
Confidence            55788888888888877654

>PRK12370 invasion protein regulator; Provisional

Probab=99.83  E-value=4.4e-18  Score=167.63  Aligned_cols=195  Identities=15%  Similarity=0.116  Sum_probs=168.8

Q ss_pred             HHHHHHHHHHc---CCHHHHHHHHHhcc---cchHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHH
Q psy1863         138 EINKAVTFLRM---NDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQ---------GEVEQAEKMAEEACTADTYNSAA  202 (425)
Q Consensus       138 ~~~~a~~~~~~---g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~  202 (425)
                      .+..|...+..   +.+++|+.+|++++   |.++.++..+|.++...         +++++|+..++++++++|+++.+
T Consensus       261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a  340 (553)
T PRK12370        261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA  340 (553)
T ss_pred             HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH
Confidence            34456544433   45789999999999   88999999999987643         34899999999999999999999


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy1863         203 FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG  282 (425)
Q Consensus       203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  282 (425)
                      +..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++.++..++.++...|
T Consensus       341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g  420 (553)
T PRK12370        341 LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHT  420 (553)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999888777777788899


Q ss_pred             CHHHHHHHHHHHHHhcC-cchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhH
Q psy1863         283 DVEQASDVNENLLLEAV-RNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDN  333 (425)
Q Consensus       283 ~~~~A~~~~~~~a~~~~-p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~  333 (425)
                      ++++|+..+++ ++... |+++  +..++.+     +.++|...+.+.....|......
T Consensus       421 ~~eeA~~~~~~-~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~  478 (553)
T PRK12370        421 GIDDAIRLGDE-LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAV  478 (553)
T ss_pred             CHHHHHHHHHH-HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHH
Confidence            99999999999 88775 6666  5666665     89999999998877766644433

>KOG0547|consensus

Probab=99.82  E-value=1.7e-18  Score=155.75  Aligned_cols=380  Identities=15%  Similarity=0.099  Sum_probs=269.5

Q ss_pred             HHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcc-------hhhcccchh
Q psy1863          12 EQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKN-------ARAVRNDAL   84 (425)
Q Consensus        12 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~~d~l   84 (425)
                      .....+|-+.+-.++.+|+|++|+..+.+|+++.        |....-..|....|..+|.+++       .-.+..|=.
T Consensus       112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~--------p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~  183 (606)
T KOG0547|consen  112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELC--------PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYV  183 (606)
T ss_pred             HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcC--------CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHH
Confidence            3556788899999999999999999999999988        5555567788888888887762       111111111


Q ss_pred             HHHHHHHH--------HHH-----HHHHH----------------------Hhhhhh----hhchhh-hhhhhHHH-HHH
Q psy1863          85 SQLHREMK--------HEA-----EKCIL----------------------TSAKLI----APSIED-NFSNGYNW-CVQ  123 (425)
Q Consensus        85 ~~~~~~~~--------~~~-----~~~~~----------------------~~~~~~----~~~~~~-~~~~~~~~-~~~  123 (425)
                      ..+.++..        .++     ..+|.                      .+...+    .|.++. .|...|.- +..
T Consensus       184 KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~  263 (606)
T KOG0547|consen  184 KALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA  263 (606)
T ss_pred             HHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc
Confidence            11111000        000     00000                      000000    122221 22222211 011


Q ss_pred             HHHhcCCcc-hhhHHHHHHHHHHHHcC---CHHHHHHHHHhcc-------cch---------HHHHHHHHHHHHHcCCHH
Q psy1863         124 SIRNSAHSS-LAQDLEINKAVTFLRMN---DVSQAVDVLKSCD-------EMT---------SSAATNLSFIYFLQGEVE  183 (425)
Q Consensus       124 ~~~~~~~~~-~~~~~~~~~a~~~~~~g---~~~~A~~~~~~~~-------~~~---------~~~~~~lg~~~~~~g~~~  183 (425)
                      .+....... -.++..+.-+..++..+   .|..|...+.+..       ..+         +.++...|..++..|++-
T Consensus       264 ~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~  343 (606)
T KOG0547|consen  264 DPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSL  343 (606)
T ss_pred             cccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCch
Confidence            111111100 11233333344444444   7777777776654       222         678888899999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy1863         184 QAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI  263 (425)
Q Consensus       184 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  263 (425)
                      .|...|++++.++|.+...++.+|.+|....+.++-...|.++..++|+++.+|+..|.+++-++++++|+..|++++++
T Consensus       344 ~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L  423 (606)
T KOG0547|consen  344 GAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL  423 (606)
T ss_pred             hhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhc
Q psy1863         264 VPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSN  336 (425)
Q Consensus       264 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~  336 (425)
                      +|++..++.+++.+.++++.++++...|+. +.+..|+.+  +...+.+     ++++|++.|.+++.+.|.........
T Consensus       424 ~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee-~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~  502 (606)
T KOG0547|consen  424 DPENAYAYIQLCCALYRQHKIAESMKTFEE-AKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNA  502 (606)
T ss_pred             ChhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccc
Confidence            999999999999999999999999999999 999999998  6666666     99999999999999999844333332


Q ss_pred             hHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcCCCCcHHHHHH
Q psy1863         337 GYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLE  416 (425)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~  416 (425)
                      +                 +-++-.+.... -.+++.+|+++++++.++.|....-...+.-+   .++....++|+++++
T Consensus       503 ~-----------------plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~---~lQ~~~i~eAielFE  561 (606)
T KOG0547|consen  503 A-----------------PLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQF---ELQRGKIDEAIELFE  561 (606)
T ss_pred             h-----------------hhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHH---HHHHhhHHHHHHHHH
Confidence            2                 11111122222 23999999999999988887765544443333   455557889999999


Q ss_pred             hHhHH
Q psy1863         417 NLLTV  421 (425)
Q Consensus       417 ~~l~~  421 (425)
                      +...+
T Consensus       562 ksa~l  566 (606)
T KOG0547|consen  562 KSAQL  566 (606)
T ss_pred             HHHHH
Confidence            88754

>KOG1173|consensus

Probab=99.82  E-value=4.6e-18  Score=155.79  Aligned_cols=280  Identities=16%  Similarity=0.108  Sum_probs=224.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCccc-ccchhcchhhhhcchhhcccc
Q psy1863           4 PEEKFERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSH-NIELTFSNINRKKNARAVRND   82 (425)
Q Consensus         4 ~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d   82 (425)
                      |++++-.+++..+=|.+.|-.+..+++|++-++...+.++.+        |++..... .++ .+...|.-.        
T Consensus       233 ~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d--------pfh~~~~~~~ia-~l~el~~~n--------  295 (611)
T KOG1173|consen  233 EDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD--------PFHLPCLPLHIA-CLYELGKSN--------  295 (611)
T ss_pred             chhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--------CCCcchHHHHHH-HHHHhcccc--------
Confidence            345666677778888999999999999999999998888877        66543321 111 222222211        


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q psy1863          83 ALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD  162 (425)
Q Consensus        83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~  162 (425)
                                    ..+..+-++.                   ..  + |..+-.|+..|..|+..|++++|..+|.++.
T Consensus       296 --------------~Lf~lsh~LV-------------------~~--y-P~~a~sW~aVg~YYl~i~k~seARry~SKat  339 (611)
T KOG1173|consen  296 --------------KLFLLSHKLV-------------------DL--Y-PSKALSWFAVGCYYLMIGKYSEARRYFSKAT  339 (611)
T ss_pred             --------------hHHHHHHHHH-------------------Hh--C-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHh
Confidence                          0111111111                   11  1 1122334788999999999999999999998


Q ss_pred             ---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHH
Q psy1863         163 ---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYN  239 (425)
Q Consensus       163 ---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  239 (425)
                         |..+.+|...|..+...|+.++|+..|..|-++-|........+|.-|...+.+..|.++|.+|+.+.|++|-++..
T Consensus       340 ~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~E  419 (611)
T KOG1173|consen  340 TLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHE  419 (611)
T ss_pred             hcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhh
Confidence               88899999999999999999999999999999999999889999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh
Q psy1863         240 LGLAHKHLNEYSDSLECFHKLQAIVP-------SMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE  310 (425)
Q Consensus       240 la~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~  310 (425)
                      +|.+.+..+.|.+|..+|+.++..-+       .....+.+||.++.+++.+++|+.+|++ ++.+.|.++  +..+|.+
T Consensus       420 lgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~-aL~l~~k~~~~~asig~i  498 (611)
T KOG1173|consen  420 LGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK-ALLLSPKDASTHASIGYI  498 (611)
T ss_pred             hhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH-HHHcCCCchhHHHHHHHH
Confidence            99999999999999999999984432       1345689999999999999999999999 999999998  7777777


Q ss_pred             -----hHHHHHHHHHHHHhhcCCchhhHhhch
Q psy1863         311 -----MKHEAEKCILTSAKLIAPSIEDNFSNG  337 (425)
Q Consensus       311 -----~~~~A~~~~~~a~~~~~~~~~~~~~~~  337 (425)
                           +.+.|+++|.+++-+.|.+.-..-.++
T Consensus       499 y~llgnld~Aid~fhKaL~l~p~n~~~~~lL~  530 (611)
T KOG1173|consen  499 YHLLGNLDKAIDHFHKALALKPDNIFISELLK  530 (611)
T ss_pred             HHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence                 999999999999999999865544443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.82  E-value=9.2e-18  Score=137.68  Aligned_cols=197  Identities=18%  Similarity=0.099  Sum_probs=165.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q psy1863         166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHK  245 (425)
Q Consensus       166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  245 (425)
                      ..+...||.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.++++|.|..++
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHH
Q psy1863         246 HLNEYSDSLECFHKLQAI--VPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAE  316 (425)
Q Consensus       246 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~  316 (425)
                      .+|++++|...|++++..  .|..+.++.++|.|..+.|+++.|..+|++ +++.+|+++  ...++..     ++-.|.
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~r-aL~~dp~~~~~~l~~a~~~~~~~~y~~Ar  193 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKR-ALELDPQFPPALLELARLHYKAGDYAPAR  193 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHH-HHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence            999999999999999864  345678999999999999999999999999 999999998  5555554     778888


Q ss_pred             HHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCC
Q psy1863         317 KCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSA  388 (425)
Q Consensus       317 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  388 (425)
                      .++++.....+.... ...+|                        ..+-...|+-+.|-.+=.+..+..|..
T Consensus       194 ~~~~~~~~~~~~~A~-sL~L~------------------------iriak~~gd~~~a~~Y~~qL~r~fP~s  240 (250)
T COG3063         194 LYLERYQQRGGAQAE-SLLLG------------------------IRIAKRLGDRAAAQRYQAQLQRLFPYS  240 (250)
T ss_pred             HHHHHHHhcccccHH-HHHHH------------------------HHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence            888777666553222 22222                        233445677777777666665444443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.81  E-value=5.2e-17  Score=166.01  Aligned_cols=323  Identities=12%  Similarity=-0.020  Sum_probs=215.3

Q ss_pred             HHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHHHHH
Q psy1863          17 GLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEAE   96 (425)
Q Consensus        17 ~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~   96 (425)
                      .+...|..+...|++++|++.+++++.++        |........++.++...|++.                   ++.
T Consensus        51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~--------P~~~~a~~~la~~l~~~g~~~-------------------eA~  103 (765)
T PRK10049         51 GYAAVAVAYRNLKQWQNSLTLWQKALSLE--------PQNDDYQRGLILTLADAGQYD-------------------EAL  103 (765)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHH-------------------HHH
Confidence            36777888999999999999999999877        655555556666666655544                   121


Q ss_pred             HHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHH
Q psy1863          97 KCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLS  173 (425)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg  173 (425)
                      ..+..+.                      ..  . +.... +..+|.++...|++++|+..+++++   |.++.++..+|
T Consensus       104 ~~l~~~l----------------------~~--~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la  157 (765)
T PRK10049        104 VKAKQLV----------------------SG--A-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYV  157 (765)
T ss_pred             HHHHHHH----------------------Hh--C-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            2111111                      11  0 11122 4555666666666666666666666   66666666666


Q ss_pred             HHHHHcCCHHH----------------------------------------------HHHHHHHHHhcCCCCHH------
Q psy1863         174 FIYFLQGEVEQ----------------------------------------------AEKMAEEACTADTYNSA------  201 (425)
Q Consensus       174 ~~~~~~g~~~~----------------------------------------------A~~~~~~al~~~p~~~~------  201 (425)
                      .++...|..++                                              |+..++.+++..|.++.      
T Consensus       158 ~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~  237 (765)
T PRK10049        158 QALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ  237 (765)
T ss_pred             HHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH
Confidence            66655555443                                              44445555544332221      


Q ss_pred             -HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHH
Q psy1863         202 -AFVNLGNCAMAREDYVKGKELYVHALDNDATC-IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM----PEVLYQIA  275 (425)
Q Consensus       202 -~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la  275 (425)
                       +.......+...|++++|+..|+++++..|.. ..+...+|.+|..+|++++|+..|++++...|.+    ......++
T Consensus       238 ~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~  317 (765)
T PRK10049        238 RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLF  317 (765)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHH
Confidence             12221223467789999999999988876432 2233446889999999999999999988888765    35677788


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCcc-------------hH----HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhH
Q psy1863         276 SLYEITGDVEQASDVNENLLLEAVRN-------------DA----LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDN  333 (425)
Q Consensus       276 ~~~~~~g~~~~A~~~~~~~a~~~~p~-------------~~----~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~  333 (425)
                      .++...|++++|+..+++ +....|.             +.    ...++.+     ++++|+..+++++...|.+....
T Consensus       318 ~a~~~~g~~~eA~~~l~~-~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~  396 (765)
T PRK10049        318 YSLLESENYPGALTVTAH-TINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLR  396 (765)
T ss_pred             HHHHhcccHHHHHHHHHH-HhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            888899999999999999 8877662             11    2333333     88999999999999999998777


Q ss_pred             hhchHHHHHHHhHH---------hhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchh
Q psy1863         334 FSNGYNWCVQSIRN---------SAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLS  393 (425)
Q Consensus       334 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~  393 (425)
                      ...+......+...         ....|....+++.+|.++...|++++|...++++.+..|.++....
T Consensus       397 ~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~  465 (765)
T PRK10049        397 IDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR  465 (765)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            76664333222221         2334445678888999999999999999999999888777765443

>KOG1155|consensus

Probab=99.81  E-value=1.1e-17  Score=149.75  Aligned_cols=157  Identities=18%  Similarity=0.176  Sum_probs=151.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHH
Q psy1863         141 KAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYV  217 (425)
Q Consensus       141 ~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  217 (425)
                      .|+.|...++.++|+.+|++++   |....+|..+|--|..+.+...|+..|++|++++|.+..+|+.+|..|..++-..
T Consensus       336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~  415 (559)
T KOG1155|consen  336 IANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHF  415 (559)
T ss_pred             ehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchH
Confidence            5778888999999999999999   8899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy1863         218 KGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLE  297 (425)
Q Consensus       218 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~  297 (425)
                      =|+-+|++++...|+++..|..||.||.++++.++|+.+|.+++.....+..++..||.+|.++++.++|..+|++ .++
T Consensus       416 YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek-~v~  494 (559)
T KOG1155|consen  416 YALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEK-YVE  494 (559)
T ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHH-HHH
Confidence            9999999999999999999999999999999999999999999999988899999999999999999999999999 776


Q ss_pred             c
Q psy1863         298 A  298 (425)
Q Consensus       298 ~  298 (425)
                      .
T Consensus       495 ~  495 (559)
T KOG1155|consen  495 V  495 (559)
T ss_pred             H
Confidence            4

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.81  E-value=2.7e-17  Score=144.30  Aligned_cols=195  Identities=16%  Similarity=0.131  Sum_probs=173.4

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL  242 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  242 (425)
                      ...+..+..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++...|.+..++.++|.
T Consensus        28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  107 (234)
T TIGR02521        28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT  107 (234)
T ss_pred             CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            44578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHH
Q psy1863         243 AHKHLNEYSDSLECFHKLQAIV--PSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKH  313 (425)
Q Consensus       243 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~  313 (425)
                      ++...|++++|+..+++++...  |.....+..+|.++...|++++|...+.+ ++..+|+++  +..++.+     +++
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~  186 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTR-ALQIDPQRPESLLELAELYYLRGQYK  186 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCcCChHHHHHHHHHHHHcCCHH
Confidence            9999999999999999999854  45677899999999999999999999999 999999887  6667766     899


Q ss_pred             HHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy1863         314 EAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDE  383 (425)
Q Consensus       314 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  383 (425)
                      +|...++++++..|....                         .+...+.++...|+.++|..+.+.+..
T Consensus       187 ~A~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       187 DARAYLERYQQTYNQTAE-------------------------SLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHHHhCCCCHH-------------------------HHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            999999999888554322                         223456788889999999998877643

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.80  E-value=7.6e-19  Score=158.86  Aligned_cols=253  Identities=19%  Similarity=0.160  Sum_probs=96.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcc-----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCD-----EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAR  213 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  213 (425)
                      +.+|.+++..|++++|++++++.+     |.++..|..+|.+....|+++.|+..|++++..++.++..+..++.+ ...
T Consensus        12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence            566999999999999999997654     67788999999999999999999999999999999999888888888 799


Q ss_pred             cCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy1863         214 EDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV--PSMPEVLYQIASLYEITGDVEQASDVN  291 (425)
Q Consensus       214 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~  291 (425)
                      +++++|+.+++++.+..+ ++..+.....++...|+++++...++++....  |.++..+..+|.++...|++++|+.+|
T Consensus        91 ~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~  169 (280)
T PF13429_consen   91 GDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY  169 (280)
T ss_dssp             ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             cccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999988764 46777788888999999999999999977655  578889999999999999999999999


Q ss_pred             HHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHH
Q psy1863         292 ENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVT  364 (425)
Q Consensus       292 ~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~  364 (425)
                      ++ +++.+|+++  ...++.+     +.+++...+....+..|++                         +.++..+|.+
T Consensus       170 ~~-al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~-------------------------~~~~~~la~~  223 (280)
T PF13429_consen  170 RK-ALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD-------------------------PDLWDALAAA  223 (280)
T ss_dssp             HH-HHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS-------------------------CCHCHHHHHH
T ss_pred             HH-HHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH-------------------------HHHHHHHHHH
Confidence            99 999999988  5556555     6666666666665555443                         3455667889


Q ss_pred             HHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcCCCCcHHHHHHhHhHHh
Q psy1863         365 FLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLTVL  422 (425)
Q Consensus       365 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~  422 (425)
                      |...|++++|+.+|+++.+..|.+|..+..+-.   ........++|..+..+++..+
T Consensus       224 ~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~---~l~~~g~~~~A~~~~~~~~~~l  278 (280)
T PF13429_consen  224 YLQLGRYEEALEYLEKALKLNPDDPLWLLAYAD---ALEQAGRKDEALRLRRQALRLL  278 (280)
T ss_dssp             HHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHH---HHT-------------------
T ss_pred             hcccccccccccccccccccccccccccccccc---cccccccccccccccccccccc
Confidence            999999999999999997777666554443333   2333447888888887777654

>KOG1129|consensus

Probab=99.80  E-value=8.7e-18  Score=144.12  Aligned_cols=225  Identities=16%  Similarity=0.108  Sum_probs=206.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q psy1863         138 EINKAVTFLRMNDVSQAVDVLKSCD--EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARED  215 (425)
Q Consensus       138 ~~~~a~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  215 (425)
                      ...+|.+|++.|-+.+|.+.++..+  ...++.+..|+.+|.+..++..|+..+.+.++..|.+...+..++.++..+++
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~  305 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ  305 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence            3578999999999999999999999  67889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863         216 YVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLL  295 (425)
Q Consensus       216 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a  295 (425)
                      +++|.++|+.+++.+|.+.++...+|.-|+-.++.+-|+.+|++.+++.-.+++.+.++|.|+..-++++-++..|++ +
T Consensus       306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R-A  384 (478)
T KOG1129|consen  306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR-A  384 (478)
T ss_pred             HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH-H
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HhcCc--chH---HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHH
Q psy1863         296 LEAVR--NDA---LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTF  365 (425)
Q Consensus       296 ~~~~p--~~~---~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  365 (425)
                      +....  +..   |+++|.+     +..-|..+|+-++..++++.+                         ...++|.+-
T Consensus       385 lstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e-------------------------alnNLavL~  439 (478)
T KOG1129|consen  385 LSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE-------------------------ALNNLAVLA  439 (478)
T ss_pred             HhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH-------------------------HHHhHHHHH
Confidence            87643  332   9999998     999999999999988877643                         455667888


Q ss_pred             HhcCCHHHHHHHHHHHHhhccCC
Q psy1863         366 LRMNDVSQAVDVLKSCDEMTSSA  388 (425)
Q Consensus       366 ~~~g~~~~A~~~~~~~~~~~~~~  388 (425)
                      .+.|++++|..++..+.+..|..
T Consensus       440 ~r~G~i~~Arsll~~A~s~~P~m  462 (478)
T KOG1129|consen  440 ARSGDILGARSLLNAAKSVMPDM  462 (478)
T ss_pred             hhcCchHHHHHHHHHhhhhCccc
Confidence            89999999999999996666544

>PRK12370 invasion protein regulator; Provisional

Probab=99.79  E-value=1.2e-16  Score=157.45  Aligned_cols=190  Identities=13%  Similarity=0.022  Sum_probs=163.2

Q ss_pred             hHHHHHHHHHHHH---------cCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q psy1863         135 QDLEINKAVTFLR---------MNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAA  202 (425)
Q Consensus       135 ~~~~~~~a~~~~~---------~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  202 (425)
                      ...+..+|.++..         .+++++|+..+++++   |.++.++..+|.++...|++++|+..|+++++++|+++.+
T Consensus       295 a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a  374 (553)
T PRK12370        295 IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADI  374 (553)
T ss_pred             HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence            3445666666543         345899999999999   9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc
Q psy1863         203 FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV-PSMPEVLYQIASLYEIT  281 (425)
Q Consensus       203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~  281 (425)
                      ++.+|.++...|++++|+..++++++++|.++.++..++.++...|++++|+..+++++... |+++.++..+|.++..+
T Consensus       375 ~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~  454 (553)
T PRK12370        375 KYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLK  454 (553)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999998887777878888999999999999999885 78899999999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCcchH--HHHHHHh---hHHHHHHHHHHHHhh
Q psy1863         282 GDVEQASDVNENLLLEAVRNDA--LSQLHRE---MKHEAEKCILTSAKL  325 (425)
Q Consensus       282 g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~---~~~~A~~~~~~a~~~  325 (425)
                      |++++|...+.+ .....|.+.  ...++..   .-++|...+++.++.
T Consensus       455 G~~~eA~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~a~~~l~~ll~~  502 (553)
T PRK12370        455 GKHELARKLTKE-ISTQEITGLIAVNLLYAEYCQNSERALPTIREFLES  502 (553)
T ss_pred             CCHHHHHHHHHH-hhhccchhHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            999999999999 888877766  4444433   334566656555443

>KOG1125|consensus

Probab=99.78  E-value=1.3e-17  Score=153.41  Aligned_cols=223  Identities=15%  Similarity=0.155  Sum_probs=188.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARED  215 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  215 (425)
                      +..|..+++.|++.+|.-+|+.++   |.+.++|..||.+....++-..|+..++++++++|+|..++..||.+|...|.
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            678999999999999999999999   99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcCcHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHH
Q psy1863         216 YVKGKELYVHALDNDATCIEALYN-------LGLAHKHLNEYSDSLECFHKLQAIVP--SMPEVLYQIASLYEITGDVEQ  286 (425)
Q Consensus       216 ~~~A~~~~~~al~~~~~~~~~~~~-------la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~  286 (425)
                      -.+|++++.+.+...|.....-..       ...-......+..-.+.|..+....|  .++++...||.+|...|+|++
T Consensus       369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            999999999999887653221110       00001111223444566777777788  789999999999999999999


Q ss_pred             HHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHH
Q psy1863         287 ASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEI  359 (425)
Q Consensus       287 A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (425)
                      |+.+|+. |+...|+|.  |..||..     +..+|+..|.+|+++.|..+..+                         +
T Consensus       449 aiDcf~~-AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~R-------------------------y  502 (579)
T KOG1125|consen  449 AVDCFEA-ALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVR-------------------------Y  502 (579)
T ss_pred             HHHHHHH-HHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeee-------------------------h
Confidence            9999999 999999999  9999998     89999999999999999876544                         4


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhccC
Q psy1863         360 NKAVTFLRMNDVSQAVDVLKSCDEMTSS  387 (425)
Q Consensus       360 ~la~~~~~~g~~~~A~~~~~~~~~~~~~  387 (425)
                      ++|.++...|.|++|+.+|-.+..+.+.
T Consensus       503 NlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  503 NLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            5568888899999999988888755543

>KOG1840|consensus

Probab=99.78  E-value=5.2e-17  Score=153.17  Aligned_cols=233  Identities=18%  Similarity=0.200  Sum_probs=186.4

Q ss_pred             chhhHHHHHHHHHHHHcCCHHHHHHHHHhcc-----------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----
Q psy1863         132 SLAQDLEINKAVTFLRMNDVSQAVDVLKSCD-----------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD----  196 (425)
Q Consensus       132 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----  196 (425)
                      +........+|..|..+|+|+.|+..++.++           +.-......+|.+|..++++.+|+..|++|+.+.    
T Consensus       196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~  275 (508)
T KOG1840|consen  196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF  275 (508)
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence            3344445569999999999999999999998           3334455679999999999999999999999873    


Q ss_pred             ----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy1863         197 ----TYNSAAFVNLGNCAMAREDYVKGKELYVHALDN--------DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV  264 (425)
Q Consensus       197 ----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  264 (425)
                          |..+.++.+||..|...|++++|..++++++.+        .|.-+..+.+++.++..++++++|..++++++++.
T Consensus       276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~  355 (508)
T KOG1840|consen  276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY  355 (508)
T ss_pred             CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence                445577999999999999999999999999987        33446678899999999999999999999998863


Q ss_pred             --------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcc-----hH-----HHHHHHh-----hHHHHHHHHHH
Q psy1863         265 --------PSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRN-----DA-----LSQLHRE-----MKHEAEKCILT  321 (425)
Q Consensus       265 --------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~-----~~-----~~~l~~~-----~~~~A~~~~~~  321 (425)
                              |..+..+.++|.+|..+|++++|.++|++ ++.+...     +.     +.+++..     ++.+|...|.+
T Consensus       356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~-ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~  434 (508)
T KOG1840|consen  356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKK-AIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE  434 (508)
T ss_pred             HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHH-HHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence                    23456889999999999999999999999 9887421     11     5666655     67778888887


Q ss_pred             HHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy1863         322 SAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDE  383 (425)
Q Consensus       322 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  383 (425)
                      +..+. ......+                 +-....+.+++.+|..+|++++|+++...+.+
T Consensus       435 ~~~i~-~~~g~~~-----------------~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  435 AKDIM-KLCGPDH-----------------PDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             HHHHH-HHhCCCC-----------------CchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            77665 2222211                 11234677899999999999999999999863

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.76  E-value=3e-16  Score=142.33  Aligned_cols=193  Identities=10%  Similarity=-0.032  Sum_probs=154.9

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy1863         134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCA  210 (425)
Q Consensus       134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (425)
                      ....++.+|.++...|++++|+..|++++   |..+.+++.+|.++...|++++|+..|+++++++|++..++.++|.++
T Consensus        63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l  142 (296)
T PRK11189         63 RAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIAL  142 (296)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            35667899999999999999999999999   999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH--H
Q psy1863         211 MAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA--S  288 (425)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A--~  288 (425)
                      ...|++++|+..|+++++.+|+++..... ..+....+++++|+..+.++....+..  .|. .+.++..+|+...+  .
T Consensus       143 ~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~~~~  218 (296)
T PRK11189        143 YYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLDKE--QWG-WNIVEFYLGKISEETLM  218 (296)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCcc--ccH-HHHHHHHccCCCHHHHH
Confidence            99999999999999999999998742221 223456789999999998877554322  222 35555667766443  3


Q ss_pred             HHHHH---HHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCch
Q psy1863         289 DVNEN---LLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSI  330 (425)
Q Consensus       289 ~~~~~---~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~  330 (425)
                      ..+.+   ...++.|..+  +..+|..     ++++|+.+|++++..+|.+.
T Consensus       219 ~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~  270 (296)
T PRK11189        219 ERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF  270 (296)
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence            22222   0224444544  8888888     99999999999999997543

>KOG1174|consensus

Probab=99.76  E-value=7e-16  Score=136.40  Aligned_cols=267  Identities=14%  Similarity=0.107  Sum_probs=218.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM  211 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  211 (425)
                      ..+...+|.+++..|++++|+..|+++.   |....+.-..|.++...|++++-.......+........-|+--+...+
T Consensus       232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~  311 (564)
T KOG1174|consen  232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLY  311 (564)
T ss_pred             HHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhh
Confidence            4455667777777777777777777776   6666677777777777777777777777777777667777888888888


Q ss_pred             HhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy1863         212 AREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVN  291 (425)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  291 (425)
                      ..+++..|+.+-+++++.+|.+..++...|.++..+|+.++|+-.|+.+..+.|...++|..|..+|...|.+.+|...-
T Consensus       312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~A  391 (564)
T KOG1174|consen  312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALA  391 (564)
T ss_pred             hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcchH--HHHHHHh-------hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhch-------hh-h
Q psy1863         292 ENLLLEAVRNDA--LSQLHRE-------MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHS-------SL-A  354 (425)
Q Consensus       292 ~~~a~~~~p~~~--~~~l~~~-------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~  354 (425)
                      .. ++...|.+.  +.-+|..       ..++|..++++++++.|.........+-....++.......       .+ .
T Consensus       392 n~-~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D  470 (564)
T KOG1174|consen  392 NW-TIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD  470 (564)
T ss_pred             HH-HHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc
Confidence            99 999999988  6667633       77899999999999999998877766533333332222221       11 3


Q ss_pred             cHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhc
Q psy1863         355 QDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSE  402 (425)
Q Consensus       355 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~  402 (425)
                      ..++..+|.++...+.+++|.+.|..+.++.|.+...+.-+..++-+.
T Consensus       471 ~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~  518 (564)
T KOG1174|consen  471 VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSD  518 (564)
T ss_pred             cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhcc
Confidence            467788999999999999999999999888887777777666664443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.76  E-value=7.9e-18  Score=152.22  Aligned_cols=152  Identities=20%  Similarity=0.218  Sum_probs=69.9

Q ss_pred             HHHHHHcCCHHHHHHHHHhcc-----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH
Q psy1863         142 AVTFLRMNDVSQAVDVLKSCD-----EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDY  216 (425)
Q Consensus       142 a~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  216 (425)
                      ..++...++++++...+.++.     +.++..|..+|.++...|++++|+..++++++.+|+++.+...++.++...|++
T Consensus       117 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~  196 (280)
T PF13429_consen  117 LQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDY  196 (280)
T ss_dssp             -H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCh
Confidence            344455555555555555533     334455555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863         217 VKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNEN  293 (425)
Q Consensus       217 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  293 (425)
                      +++...++......|+++..+..+|.++..+|++++|+.+|++++..+|+++.++..+|.++...|+.++|..++++
T Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~  273 (280)
T PF13429_consen  197 DEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQ  273 (280)
T ss_dssp             HHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------------
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            55555555555544555555555555555555555555555555555555555555555555555555555555554

>KOG0624|consensus

Probab=99.76  E-value=3e-15  Score=129.51  Aligned_cols=247  Identities=16%  Similarity=0.107  Sum_probs=120.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---H-----------
Q psy1863         140 NKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSA---A-----------  202 (425)
Q Consensus       140 ~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~-----------  202 (425)
                      ..|.+|+.+|+-.-|+.-+.+++   |+...+....|.+++.+|++++|..-|+.++..+|++..   +           
T Consensus        77 rRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~  156 (504)
T KOG0624|consen   77 RRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHW  156 (504)
T ss_pred             HHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHH
Confidence            34445555555555555555554   444455555555555555555555555555555553321   1           


Q ss_pred             -HHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy1863         203 -FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT  281 (425)
Q Consensus       203 -~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  281 (425)
                       +......++..|+...|+.+..+.+++.|=++..+...+.||...|+...|+..++.+-++..++.+.++.++.+++..
T Consensus       157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v  236 (504)
T KOG0624|consen  157 VLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV  236 (504)
T ss_pred             HHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence             1122223334455555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CCHHHHHHHHHHHHHhcCcchH-----HHHHHHh--------------hHHHHHHHHHHHHhhcCCchhhHhhch-----
Q psy1863         282 GDVEQASDVNENLLLEAVRNDA-----LSQLHRE--------------MKHEAEKCILTSAKLIAPSIEDNFSNG-----  337 (425)
Q Consensus       282 g~~~~A~~~~~~~a~~~~p~~~-----~~~l~~~--------------~~~~A~~~~~~a~~~~~~~~~~~~~~~-----  337 (425)
                      |+.+.++...++ +++++|++.     +..+-.+              ++.+++...++.++..|.........-     
T Consensus       237 gd~~~sL~~iRE-CLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~  315 (504)
T KOG0624|consen  237 GDAENSLKEIRE-CLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCT  315 (504)
T ss_pred             hhHHHHHHHHHH-HHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeee
Confidence            555555555555 555555544     2222111              333444444444444444222111100     


Q ss_pred             -------HHHHHHHhH-HhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccC
Q psy1863         338 -------YNWCVQSIR-NSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSS  387 (425)
Q Consensus       338 -------~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  387 (425)
                             +...+.... -....+....+....|..|+-...|+.||..|+++....++
T Consensus       316 C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s  373 (504)
T KOG0624|consen  316 CYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES  373 (504)
T ss_pred             cccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence                   000111111 12222333455666777888888888888888887654443

>KOG0550|consensus

Probab=99.75  E-value=3.1e-16  Score=138.69  Aligned_cols=278  Identities=15%  Similarity=0.100  Sum_probs=213.2

Q ss_pred             HHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcc-----hhhcccc---hhHH
Q psy1863          15 IIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKN-----ARAVRND---ALSQ   86 (425)
Q Consensus        15 ~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~d---~l~~   86 (425)
                      ..++-+.+-..+.+.+|.+|+..+..|++..        |.....+.+-..++...|++..     .+.+..+   .-.+
T Consensus        49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~--------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~  120 (486)
T KOG0550|consen   49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMC--------PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQ  120 (486)
T ss_pred             HHHHHhhcchHHHHhhHHHHHHHHHHHHHhC--------ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccc
Confidence            4567788888999999999999999999988        6666677777888888888761     1111111   1111


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---c
Q psy1863          87 LHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---E  163 (425)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~  163 (425)
                      ....+...+...++.+...+...-......++..+...+......+.+....+..+.++...|++++|+..--..+   +
T Consensus       121 ~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~  200 (486)
T KOG0550|consen  121 LREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA  200 (486)
T ss_pred             cchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc
Confidence            2222223333333333322211111111222333333333333345556666888999999999999998877777   8


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH------------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Q psy1863         164 MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSA------------AFVNLGNCAMAREDYVKGKELYVHALDNDA  231 (425)
Q Consensus       164 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------------~~~~la~~~~~~g~~~~A~~~~~~al~~~~  231 (425)
                      .+..+++..|.+++..++.+.|+.+|++++.++|+...            .+-.-|+-.++.|+|.+|.++|..+|.++|
T Consensus       201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP  280 (486)
T KOG0550|consen  201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDP  280 (486)
T ss_pred             chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCc
Confidence            88999999999999999999999999999999998753            366779999999999999999999999999


Q ss_pred             Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcc
Q psy1863         232 TC----IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRN  301 (425)
Q Consensus       232 ~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~  301 (425)
                      ++    +..|.++|.+..++|+..+|+..++.++.++|....++...|.|+..++++++|++.|++ +.+...+
T Consensus       281 ~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~-a~q~~~s  353 (486)
T KOG0550|consen  281 SNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEK-AMQLEKD  353 (486)
T ss_pred             cccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccc
Confidence            86    567899999999999999999999999999999999999999999999999999999999 9988766

>KOG2003|consensus

Probab=99.74  E-value=6.5e-16  Score=138.15  Aligned_cols=196  Identities=16%  Similarity=0.058  Sum_probs=177.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy1863         138 EINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE  214 (425)
Q Consensus       138 ~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  214 (425)
                      ..+.|.+.+..|++++|.+.|++++   ..-..+++++|..+..+|+.++|+.+|-+.-.+-.++..+++.++.+|..+.
T Consensus       493 ~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~le  572 (840)
T KOG2003|consen  493 LTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLE  572 (840)
T ss_pred             hhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence            4677889999999999999999999   4556789999999999999999999999988888899999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863         215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENL  294 (425)
Q Consensus       215 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  294 (425)
                      +..+|++.+.++..+-|+++.++..||.+|-+.|+-.+|..++-...+..|.+..+...||..|....-+++|+.+|++ 
T Consensus       573 d~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ek-  651 (840)
T KOG2003|consen  573 DPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEK-  651 (840)
T ss_pred             CHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHH-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHhcCcchH-HHHH-HHh-----hHHHHHHHHHHHHhhcCCchhhHh
Q psy1863         295 LLEAVRNDA-LSQL-HRE-----MKHEAEKCILTSAKLIAPSIEDNF  334 (425)
Q Consensus       295 a~~~~p~~~-~~~l-~~~-----~~~~A~~~~~~a~~~~~~~~~~~~  334 (425)
                      +.-+.|+-. |..+ +.+     ++++|.+.|+...+.+|.+.+...
T Consensus       652 aaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclk  698 (840)
T KOG2003|consen  652 AALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLK  698 (840)
T ss_pred             HHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHH
Confidence            988999888 5543 333     999999999999999999877543

>KOG0624|consensus

Probab=99.73  E-value=7.4e-15  Score=127.12  Aligned_cols=286  Identities=10%  Similarity=0.046  Sum_probs=224.3

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy1863         134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCA  210 (425)
Q Consensus       134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (425)
                      ..+-.+.+|..++..|++..|+..|..++   |.+..+++..|.+|+.+|+-.-|+.-+.+++++.|+...+....|.++
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl  116 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL  116 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence            34456899999999999999999999999   899999999999999999999999999999999999999999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCcCc---HHHH------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy1863         211 MAREDYVKGKELYVHALDNDATC---IEAL------------YNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIA  275 (425)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~~~~---~~~~------------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  275 (425)
                      +++|++++|...|.+++..+|++   .++.            ......+...|+...|+....+.+++.|=+...+...+
T Consensus       117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Ra  196 (504)
T KOG0624|consen  117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARA  196 (504)
T ss_pred             hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHH
Confidence            99999999999999999999965   2222            23344456679999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhch-----------
Q psy1863         276 SLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNG-----------  337 (425)
Q Consensus       276 ~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~-----------  337 (425)
                      .||...|++..|+..++. +.++..++.  ++.++.+     +...++...+++++++|+.-...-..-           
T Consensus       197 kc~i~~~e~k~AI~Dlk~-askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les  275 (504)
T KOG0624|consen  197 KCYIAEGEPKKAIHDLKQ-ASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLES  275 (504)
T ss_pred             HHHHhcCcHHHHHHHHHH-HHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999 999887777  6666665     888999999999999998754221110           


Q ss_pred             ---------HHHHHHHh-HHhhchhhhc----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhcc
Q psy1863         338 ---------YNWCVQSI-RNSAHSSLAQ----DLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEF  403 (425)
Q Consensus       338 ---------~~~~~~~~-~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~  403 (425)
                               |..|.... ......+-..    ...-.+..|+...|++-+|+...+++....   |++...+.---...+
T Consensus       276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d---~~dv~~l~dRAeA~l  352 (504)
T KOG0624|consen  276 AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID---PDDVQVLCDRAEAYL  352 (504)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC---chHHHHHHHHHHHHh
Confidence                     11111110 0011111111    122237889999999999999999985555   555555544434455


Q ss_pred             CcCCCCcHHHHHHhHhHHhh
Q psy1863         404 QYLPTSEVPIYLENLLTVLQ  423 (425)
Q Consensus       404 ~~~~~~ea~~~~~~~l~~~~  423 (425)
                      +...+++|+.=++++++..+
T Consensus       353 ~dE~YD~AI~dye~A~e~n~  372 (504)
T KOG0624|consen  353 GDEMYDDAIHDYEKALELNE  372 (504)
T ss_pred             hhHHHHHHHHHHHHHHhcCc
Confidence            66667788888888776543

>KOG0495|consensus

Probab=99.73  E-value=9e-15  Score=136.33  Aligned_cols=281  Identities=14%  Similarity=0.069  Sum_probs=204.0

Q ss_pred             hhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy1863         133 LAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNC  209 (425)
Q Consensus       133 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  209 (425)
                      .+..+++..+..+...|+...|..++.++.   |.+.+.|..--.+.+...+++.|..+|.++....| ...+|+.-+..
T Consensus       582 kae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~  660 (913)
T KOG0495|consen  582 KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANL  660 (913)
T ss_pred             cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHH
Confidence            345566777777788888888888888877   77778888888888888888888888888877554 56777777777


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy1863         210 AMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASD  289 (425)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  289 (425)
                      ...+++.++|+.+++.+++..|+....|..+|.++.++++.+.|...|...++.-|+.+..|..++.+-...|+.-.|..
T Consensus       661 er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~  740 (913)
T KOG0495|consen  661 ERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARS  740 (913)
T ss_pred             HHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhh-----hcHH
Q psy1863         290 VNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSL-----AQDL  357 (425)
Q Consensus       290 ~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~  357 (425)
                      .+.+ +.-.+|.+.  |....++     +.+.|.....++++..|++-..|...-+..-.-..+....+.+     .+-+
T Consensus       741 ildr-arlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphV  819 (913)
T KOG0495|consen  741 ILDR-ARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHV  819 (913)
T ss_pred             HHHH-HHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchh
Confidence            8888 888888888  3333333     7788888888888888877543332211000001111111111     3456


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcCCCCcHHHHHHhH
Q psy1863         358 EINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENL  418 (425)
Q Consensus       358 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~  418 (425)
                      .+..|..+....++++|.++|.++.+..++..+.-.++|-.   ++......+..+.+.+.
T Consensus       820 llaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykf---el~hG~eed~kev~~~c  877 (913)
T KOG0495|consen  820 LLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKF---ELRHGTEEDQKEVLKKC  877 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHH---HHHhCCHHHHHHHHHHH
Confidence            67788999999999999999999988887777766555543   33332344444555443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.73  E-value=6.9e-16  Score=135.91  Aligned_cols=169  Identities=14%  Similarity=0.157  Sum_probs=149.2

Q ss_pred             cchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---
Q psy1863         131 SSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTS---SAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSA---  201 (425)
Q Consensus       131 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---  201 (425)
                      .....+.++.+|..++..|++++|+..|++++   |.++   .+++.+|.++...|++++|+..++++++.+|+++.   
T Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence            34567788999999999999999999999988   5443   68899999999999999999999999999998776   


Q ss_pred             HHHHHHHHHHHh--------cCHHHHHHHHHHHHhcCcCcHHHH-----------------HHHHHHHHHcCCHHHHHHH
Q psy1863         202 AFVNLGNCAMAR--------EDYVKGKELYVHALDNDATCIEAL-----------------YNLGLAHKHLNEYSDSLEC  256 (425)
Q Consensus       202 ~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~-----------------~~la~~~~~~g~~~~A~~~  256 (425)
                      +++.+|.++...        |++++|+..|++++..+|++..++                 ..+|.++...|++.+|+..
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~  188 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINR  188 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            689999999876        899999999999999999885432                 3678899999999999999


Q ss_pred             HHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCc
Q psy1863         257 FHKLQAIVPSM---PEVLYQIASLYEITGDVEQASDVNENLLLEAVR  300 (425)
Q Consensus       257 ~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p  300 (425)
                      +++++...|+.   +.+++.+|.++..+|++++|..+++. .....|
T Consensus       189 ~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~-l~~~~~  234 (235)
T TIGR03302       189 FETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAV-LGANYP  234 (235)
T ss_pred             HHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCC
Confidence            99999997764   57999999999999999999999988 665555

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0548|consensus

Probab=99.73  E-value=3.5e-15  Score=136.52  Aligned_cols=328  Identities=16%  Similarity=0.149  Sum_probs=218.0

Q ss_pred             HHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHHH
Q psy1863          15 IIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHE   94 (425)
Q Consensus        15 ~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~   94 (425)
                      +..+.+++-...+.|+|+.|+..|-+|+.++        |.+-.-..|-...|...|.+.                    
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~--------p~nhvlySnrsaa~a~~~~~~--------------------   53 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLS--------PTNHVLYSNRSAAYASLGSYE--------------------   53 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccC--------CCccchhcchHHHHHHHhhHH--------------------
Confidence            3567788999999999999999999999988        555334444444555545433                    


Q ss_pred             HHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHH
Q psy1863          95 AEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATN  171 (425)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~  171 (425)
                        ..+..+.+.+  .+.++|..||                    ..+|..++-.|+|++|+..|.+.+   |.+.....+
T Consensus        54 --~al~da~k~~--~l~p~w~kgy--------------------~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~g  109 (539)
T KOG0548|consen   54 --KALKDATKTR--RLNPDWAKGY--------------------SRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTG  109 (539)
T ss_pred             --HHHHHHHHHH--hcCCchhhHH--------------------HHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHh
Confidence              2233333332  4567787777                    678999999999999999999998   778777777


Q ss_pred             HHHHHHHcC-----------------C-------HHHHHHHHHHHHhcC-------------------------------
Q psy1863         172 LSFIYFLQG-----------------E-------VEQAEKMAEEACTAD-------------------------------  196 (425)
Q Consensus       172 lg~~~~~~g-----------------~-------~~~A~~~~~~al~~~-------------------------------  196 (425)
                      ++.++...-                 +       .+.+.....+.+..+                               
T Consensus       110 l~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~  189 (539)
T KOG0548|consen  110 LAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYAS  189 (539)
T ss_pred             HHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCcccccccc
Confidence            777762220                 0       001111111111110                               


Q ss_pred             ----------CC------------C---------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q psy1863         197 ----------TY------------N---------SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHK  245 (425)
Q Consensus       197 ----------p~------------~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  245 (425)
                                |.            .         ......+|+......+++.|++.|..++.++ .+...+.+.+.+|+
T Consensus       190 ~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~  268 (539)
T KOG0548|consen  190 GIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYL  268 (539)
T ss_pred             ccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHH
Confidence                      10            0         1225678888888888999999999999888 77777888888888


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCc------------------
Q psy1863         246 HLNEYSDSLECFHKLQAIVPSM-------PEVLYQIASLYEITGDVEQASDVNENLLLEAVR------------------  300 (425)
Q Consensus       246 ~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p------------------  300 (425)
                      ..|.+.+.+..+.++++.....       ..+...+|..|...++++.|+.+|.+ ++....                  
T Consensus       269 e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k-aLte~Rt~~~ls~lk~~Ek~~k~~  347 (539)
T KOG0548|consen  269 ERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK-ALTEHRTPDLLSKLKEAEKALKEA  347 (539)
T ss_pred             hccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH-HhhhhcCHHHHHHHHHHHHHHHHH
Confidence            8888888888888877665421       22344577788888888888888887 665422                  


Q ss_pred             --------chH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhH---------HhhchhhhcH
Q psy1863         301 --------NDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIR---------NSAHSSLAQD  356 (425)
Q Consensus       301 --------~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~  356 (425)
                              .-.  ...-|..     ++..|+..|.++++.+|++...+.+.+..+..-+..         .....+-...
T Consensus       348 e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~k  427 (539)
T KOG0548|consen  348 ERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIK  427 (539)
T ss_pred             HHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHH
Confidence                    111  1222222     888888888888888888777666555433322111         1223334456


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHH
Q psy1863         357 LEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIY  396 (425)
Q Consensus       357 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~  396 (425)
                      .++..|.++..+.+|++|++.|.++....|....-+..+.
T Consensus       428 gy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~  467 (539)
T KOG0548|consen  428 AYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYR  467 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            6778899999999999999999999777765554444333

>TIGR00540 hemY_coli hemY protein

Probab=99.73  E-value=3e-14  Score=135.54  Aligned_cols=256  Identities=12%  Similarity=0.049  Sum_probs=167.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcc---cchH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCD---EMTS-SAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE  214 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~---~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  214 (425)
                      +..|.++..+|+++.|..++.++.   |... .+....+.++...|++++|...+++.++..|+++.++..++.++...|
T Consensus       122 llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~  201 (409)
T TIGR00540       122 IKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSG  201 (409)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence            455777888888888888888876   4443 344556888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHhcCcCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHH
Q psy1863         215 DYVKGKELYVHALDNDATCIEAL----YNLGLAHKHLNEYSDSLECFHKLQAIVP----SMPEVLYQIASLYEITGDVEQ  286 (425)
Q Consensus       215 ~~~~A~~~~~~al~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~  286 (425)
                      ++++|.+.+.+..+..+.++...    .....-....+..+++.+.+.++....|    +++..+..++..+...|++++
T Consensus       202 d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~  281 (409)
T TIGR00540       202 AWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDS  281 (409)
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHH
Confidence            88888888888887643332222    1222222344455555667777777777    478888888888888888888


Q ss_pred             HHHHHHHHHHhcCcchH-H--HHH---HHh---hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHH
Q psy1863         287 ASDVNENLLLEAVRNDA-L--SQL---HRE---MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDL  357 (425)
Q Consensus       287 A~~~~~~~a~~~~p~~~-~--~~l---~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (425)
                      |...+++ +++..|++. .  ..+   ..+   +...+...++++++..|++...                       .+
T Consensus       282 A~~~l~~-~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~-----------------------~l  337 (409)
T TIGR00540       282 AQEIIFD-GLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKC-----------------------CI  337 (409)
T ss_pred             HHHHHHH-HHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhH-----------------------HH
Confidence            8888888 888888776 1  122   122   5566777777777777766521                       22


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHH--HHhhccCCccchhHHHHHhhhccCcCCCCcHHHHHHhHhHHh
Q psy1863         358 EINKAVTFLRMNDVSQAVDVLKS--CDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLTVL  422 (425)
Q Consensus       358 ~~~la~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~  422 (425)
                      ...+|.++++.|++++|.+.|++  ..+..|+... ..   .+..-.......++|..++.+.+..+
T Consensus       338 l~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~---~La~ll~~~g~~~~A~~~~~~~l~~~  400 (409)
T TIGR00540       338 NRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LA---MAADAFDQAGDKAEAAAMRQDSLGLM  400 (409)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HH---HHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            33456666777777777777773  3223332222 11   11111222235666667776665544

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG2076|consensus

Probab=99.73  E-value=4.6e-15  Score=143.17  Aligned_cols=294  Identities=13%  Similarity=0.069  Sum_probs=215.9

Q ss_pred             HHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHH
Q psy1863          11 MEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHRE   90 (425)
Q Consensus        11 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~   90 (425)
                      +...+.+|+.+|-.++-+|++++|.+.+.++++.+        |....+...|+..|.+.|++.                
T Consensus       135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd--------p~~~~ay~tL~~IyEqrGd~e----------------  190 (895)
T KOG2076|consen  135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQD--------PRNPIAYYTLGEIYEQRGDIE----------------  190 (895)
T ss_pred             cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------ccchhhHHHHHHHHHHcccHH----------------
Confidence            44558999999999999999999999999999877        888888899999999988754                


Q ss_pred             HHHHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHH
Q psy1863          91 MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSS  167 (425)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~  167 (425)
                         .+..+.+.++-+                         .+-..+.|..++.....+|++.+|+-+|.+++   |.+..
T Consensus       191 ---K~l~~~llAAHL-------------------------~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~  242 (895)
T KOG2076|consen  191 ---KALNFWLLAAHL-------------------------NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWE  242 (895)
T ss_pred             ---HHHHHHHHHHhc-------------------------CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchH
Confidence               122222222211                         11223667788888889999999999999998   88888


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc--CcHHHHHHH
Q psy1863         168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNS-----AAFVNLGNCAMAREDYVKGKELYVHALDNDA--TCIEALYNL  240 (425)
Q Consensus       168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~l  240 (425)
                      .....+.+|.+.|+...|...|.+++...|...     ......+..+...++-+.|++.++.++....  .....+..+
T Consensus       243 ~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~  322 (895)
T KOG2076|consen  243 LIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNIL  322 (895)
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHH
Confidence            888899999999999999999999999888321     2234446667777777888888888777321  112233444


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHh----------------------------------------------------------
Q psy1863         241 GLAHKHLNEYSDSLECFHKLQA----------------------------------------------------------  262 (425)
Q Consensus       241 a~~~~~~g~~~~A~~~~~~al~----------------------------------------------------------  262 (425)
                      +.++.....++.|.......-.                                                          
T Consensus       323 ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~  402 (895)
T KOG2076|consen  323 AELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHF  402 (895)
T ss_pred             HHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHH
Confidence            5555555555555444433322                                                          


Q ss_pred             -----hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH---HHHHHHh-----hHHHHHHHHHHHHhhcCC
Q psy1863         263 -----IVP-SMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA---LSQLHRE-----MKHEAEKCILTSAKLIAP  328 (425)
Q Consensus       263 -----~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~---~~~l~~~-----~~~~A~~~~~~a~~~~~~  328 (425)
                           ..| +.++.+..++.++...|++.+|+.+|.. +....+...   |..+|.+     .+++|+.+|.+++...|.
T Consensus       403 l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~-i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~  481 (895)
T KOG2076|consen  403 LVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSP-ITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD  481 (895)
T ss_pred             HHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH-HhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence                 112 3456778888888888999999998888 666554433   8888888     888899999999988888


Q ss_pred             chhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy1863         329 SIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD  382 (425)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  382 (425)
                      +.+                         +.+.++.++...|++++|++++....
T Consensus       482 ~~D-------------------------~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  482 NLD-------------------------ARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             chh-------------------------hhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            765                         44556899999999999999999864

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.72  E-value=4.2e-16  Score=125.18  Aligned_cols=125  Identities=18%  Similarity=0.176  Sum_probs=96.5

Q ss_pred             HHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHH
Q psy1863         156 DVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIE  235 (425)
Q Consensus       156 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  235 (425)
                      .++++++..+|..+..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|++++.++|+++.
T Consensus        14 ~~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~   93 (144)
T PRK15359         14 DILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPE   93 (144)
T ss_pred             HHHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH
Confidence            34555554444456677888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy1863         236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI  280 (425)
Q Consensus       236 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  280 (425)
                      +++++|.++..+|++++|+..|.+++...|+++..+.++|.+...
T Consensus        94 a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~  138 (144)
T PRK15359         94 PVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM  138 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            888888888888888888888888888888888877777766544

>KOG1129|consensus

Probab=99.71  E-value=1.2e-15  Score=131.07  Aligned_cols=255  Identities=15%  Similarity=0.079  Sum_probs=212.8

Q ss_pred             HHHHHcCCHHHHHHHHHhcc-------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy1863         143 VTFLRMNDVSQAVDVLKSCD-------------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNC  209 (425)
Q Consensus       143 ~~~~~~g~~~~A~~~~~~~~-------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  209 (425)
                      .+++..+|...|-......+             ..+......+|.||+..|.+.+|.+.++.+++..| .++.+..|+.+
T Consensus       187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskv  265 (478)
T KOG1129|consen  187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKV  265 (478)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHH
Confidence            34556666666664443333             22334446899999999999999999999998877 67888999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy1863         210 AMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASD  289 (425)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  289 (425)
                      |.+..+...|+..+.+.+...|.+...+...+.++..++++++|.++|+.+++.+|.+.++...+|.-|..-++++-|+.
T Consensus       266 Y~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alr  345 (478)
T KOG1129|consen  266 YQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALR  345 (478)
T ss_pred             HHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHH
Q psy1863         290 VNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKA  362 (425)
Q Consensus       290 ~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la  362 (425)
                      +|++ .+++.-.++  +.++|.+     +++-++..|++++......                      ....++|++++
T Consensus       346 yYRR-iLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~----------------------~~aaDvWYNlg  402 (478)
T KOG1129|consen  346 YYRR-ILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQP----------------------GQAADVWYNLG  402 (478)
T ss_pred             HHHH-HHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCc----------------------chhhhhhhccc
Confidence            9999 999998888  7888887     8888899999888765422                      12357899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcCCCCcHHHHHHhHhHHhhc
Q psy1863         363 VTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLTVLQY  424 (425)
Q Consensus       363 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~~  424 (425)
                      .+....|++.-|..+|+-+.   ..++++-..+..|..-..+.....+|-.+++.+-.+.|+
T Consensus       403 ~vaV~iGD~nlA~rcfrlaL---~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~  461 (478)
T KOG1129|consen  403 FVAVTIGDFNLAKRCFRLAL---TSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD  461 (478)
T ss_pred             eeEEeccchHHHHHHHHHHh---ccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence            99999999999999999984   444444444444444456666889999999988877765

>KOG2076|consensus

Probab=99.71  E-value=1.3e-14  Score=140.06  Aligned_cols=189  Identities=16%  Similarity=0.219  Sum_probs=159.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM  211 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  211 (425)
                      ..-.+..|+.++..|++++|..++.+++   |..+.+|+.||.+|..+|+.+++....-.|--++|.+...|..++....
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~  218 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE  218 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            3445677889999999999999999999   9999999999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHcCCHHH
Q psy1863         212 AREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMP-----EVLYQIASLYEITGDVEQ  286 (425)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~  286 (425)
                      ++|.+++|+-+|.+|++.+|.+....+..+.+|.++|+...|+..|.+++...|...     ......+..+...++-+.
T Consensus       219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~  298 (895)
T KOG2076|consen  219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER  298 (895)
T ss_pred             hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence            999999999999999999999999999999999999999999999999999999322     234556777888888899


Q ss_pred             HHHHHHHHHHhcCcchH----HHHHHHh-----hHHHHHHHHHHHHh
Q psy1863         287 ASDVNENLLLEAVRNDA----LSQLHRE-----MKHEAEKCILTSAK  324 (425)
Q Consensus       287 A~~~~~~~a~~~~p~~~----~~~l~~~-----~~~~A~~~~~~a~~  324 (425)
                      |++.+.. ++....+-.    +.-++.+     .++.+.........
T Consensus       299 a~~~le~-~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~  344 (895)
T KOG2076|consen  299 AAKALEG-ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRN  344 (895)
T ss_pred             HHHHHHH-HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence            9999999 887322211    3333333     55666555544433

>PLN02789 farnesyltranstransferase

Probab=99.71  E-value=8.7e-15  Score=132.47  Aligned_cols=189  Identities=13%  Similarity=0.024  Sum_probs=165.5

Q ss_pred             HHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH--H
Q psy1863         144 TFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQG-EVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDY--V  217 (425)
Q Consensus       144 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~--~  217 (425)
                      ++...++.++|+..+.+++   |.+..+|...|.++..+| ++++++..+++++..+|++..+|+..+.++...|+.  +
T Consensus        46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~  125 (320)
T PLN02789         46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN  125 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence            4566789999999999999   999999999999999998 689999999999999999999999999999988874  7


Q ss_pred             HHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCH----HHHHHH
Q psy1863         218 KGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT---GDV----EQASDV  290 (425)
Q Consensus       218 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~----~~A~~~  290 (425)
                      +++.++.++++.+|.+..+|.+.|.++...|++++|++++.++++.+|.+..+|+..+.+...+   |.+    ++++.+
T Consensus       126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y  205 (320)
T PLN02789        126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY  205 (320)
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence            8899999999999999999999999999999999999999999999999999999999998776   333    578888


Q ss_pred             HHHHHHhcCcchH--HHHHHHh---------hHHHHHHHHHHHHhhcCCchhhH
Q psy1863         291 NENLLLEAVRNDA--LSQLHRE---------MKHEAEKCILTSAKLIAPSIEDN  333 (425)
Q Consensus       291 ~~~~a~~~~p~~~--~~~l~~~---------~~~~A~~~~~~a~~~~~~~~~~~  333 (425)
                      ..+ ++..+|++.  |..++.+         ...+|...+.++++..|.+....
T Consensus       206 ~~~-aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al  258 (320)
T PLN02789        206 TID-AILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFAL  258 (320)
T ss_pred             HHH-HHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHH
Confidence            889 999999998  7666665         23457777888777666655433

>KOG1174|consensus

Probab=99.71  E-value=2.5e-15  Score=132.99  Aligned_cols=270  Identities=11%  Similarity=0.005  Sum_probs=217.2

Q ss_pred             HHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHH
Q psy1863          13 QEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMK   92 (425)
Q Consensus        13 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~   92 (425)
                      -.++-|.+-|.++...|++++|...|.++..++        |.++...-.-+...+.-|++.        .+.       
T Consensus       230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--------py~i~~MD~Ya~LL~~eg~~e--------~~~-------  286 (564)
T KOG1174|consen  230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--------PDNVEAMDLYAVLLGQEGGCE--------QDS-------  286 (564)
T ss_pred             ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--------hhhhhhHHHHHHHHHhccCHh--------hHH-------
Confidence            446778999999999999999999998887777        333222222222333333332        000       


Q ss_pred             HHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHH
Q psy1863          93 HEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAA  169 (425)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~  169 (425)
                       ....      .++                .      .......-++.-+...+..+++..|+.+-.+++   +.+..++
T Consensus       287 -~L~~------~Lf----------------~------~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~al  337 (564)
T KOG1174|consen  287 -ALMD------YLF----------------A------KVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEAL  337 (564)
T ss_pred             -HHHH------HHH----------------h------hhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHH
Confidence             0000      010                0      000122233555778888999999999999999   8889999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHH-HHHH-Hc
Q psy1863         170 TNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLG-LAHK-HL  247 (425)
Q Consensus       170 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la-~~~~-~~  247 (425)
                      ...|.++...|+.++|+-.|+.|..+.|....+|-.+..+|...|++.+|....+.++..-|.++.++..+| .++. .-
T Consensus       338 ilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp  417 (564)
T KOG1174|consen  338 ILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDP  417 (564)
T ss_pred             HhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999997 4444 33


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH-HHHHHHh-----hHHHHHHHHHH
Q psy1863         248 NEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA-LSQLHRE-----MKHEAEKCILT  321 (425)
Q Consensus       248 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~-~~~l~~~-----~~~~A~~~~~~  321 (425)
                      .--++|.+.+++++++.|....+...++.++...|.++.++..+++ .+...|+.. ...||.+     .+++|.++|..
T Consensus       418 ~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~-~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~  496 (564)
T KOG1174|consen  418 RMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK-HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYK  496 (564)
T ss_pred             hhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH-HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            4458999999999999999999999999999999999999999999 999999999 7788887     89999999999


Q ss_pred             HHhhcCCchhhHhh
Q psy1863         322 SAKLIAPSIEDNFS  335 (425)
Q Consensus       322 a~~~~~~~~~~~~~  335 (425)
                      +++++|.+......
T Consensus       497 ALr~dP~~~~sl~G  510 (564)
T KOG1174|consen  497 ALRQDPKSKRTLRG  510 (564)
T ss_pred             HHhcCccchHHHHH
Confidence            99999998765443

>KOG1840|consensus

Probab=99.71  E-value=1.2e-15  Score=144.15  Aligned_cols=249  Identities=17%  Similarity=0.201  Sum_probs=179.8

Q ss_pred             HHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHH
Q psy1863          12 EQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREM   91 (425)
Q Consensus        12 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~   91 (425)
                      +..+..+..-|..+..+|+|+.|...++.|+..-....+...+.-.....+++..|.+.+++.                 
T Consensus       196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~-----------------  258 (508)
T KOG1840|consen  196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYD-----------------  258 (508)
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHH-----------------
Confidence            344566777889999999999999999999886211111000000000112444444444433                 


Q ss_pred             HHHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---------
Q psy1863          92 KHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---------  162 (425)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---------  162 (425)
                        ++...+..+..+.                +.+.. ...+..+..+.++|..|...|+|++|..++++++         
T Consensus       259 --eAv~ly~~AL~i~----------------e~~~G-~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~  319 (508)
T KOG1840|consen  259 --EAVNLYEEALTIR----------------EEVFG-EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGA  319 (508)
T ss_pred             --HHHHHHHHHHHHH----------------HHhcC-CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhcc
Confidence              2222222221111                00001 2234456667899999999999999999999987         


Q ss_pred             --cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--
Q psy1863         163 --EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD--------TYNSAAFVNLGNCAMAREDYVKGKELYVHALDND--  230 (425)
Q Consensus       163 --~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--  230 (425)
                        +.-+..+.+++.++..++++++|..++.+++++.        |..+..+.++|.+|..+|++++|.++|++++++.  
T Consensus       320 ~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~  399 (508)
T KOG1840|consen  320 SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE  399 (508)
T ss_pred             ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence              4556678889999999999999999999998763        2345679999999999999999999999999873  


Q ss_pred             ------cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy1863         231 ------ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV-------PSMPEVLYQIASLYEITGDVEQASDVNENLLLE  297 (425)
Q Consensus       231 ------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~  297 (425)
                            +.....+.++|..|.+.+++++|...|.++..+.       |+....+.+|+.+|..+|+++.|+++..+ ++.
T Consensus       400 ~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~-~~~  478 (508)
T KOG1840|consen  400 LLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEK-VLN  478 (508)
T ss_pred             cccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHH-HHH
Confidence                  3346678899999999999999999999988763       34556889999999999999999999988 663

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.71  E-value=2.4e-14  Score=135.50  Aligned_cols=254  Identities=12%  Similarity=0.033  Sum_probs=143.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcc--cchHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHhc
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCD--EMTSSAATNL-SFIYFLQGEVEQAEKMAEEACTADTYNSAA-FVNLGNCAMARE  214 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l-g~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~g  214 (425)
                      +..|...+..|++++|.+.+.+..  .+.+..++.+ +......|+++.|..++.++.+.+|++... ....+.++...|
T Consensus        88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g  167 (398)
T PRK10747         88 TEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARN  167 (398)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCC
Confidence            444556666666666666555543  2233444433 333366666666666666666666665422 233366666666


Q ss_pred             CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----------------------------
Q psy1863         215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP-----------------------------  265 (425)
Q Consensus       215 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----------------------------  265 (425)
                      ++++|...++++.+..|+++.++..++.+|...|++++|+..+.+..+..+                             
T Consensus       168 ~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~  247 (398)
T PRK10747        168 ENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEG  247 (398)
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            666666666666666666666666666666666666666655555554433                             


Q ss_pred             -------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH-HHHHHHh---hHHHHHHHHHHHHhhcCC
Q psy1863         266 -------------SMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA-LSQLHRE---MKHEAEKCILTSAKLIAP  328 (425)
Q Consensus       266 -------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~-~~~l~~~---~~~~A~~~~~~a~~~~~~  328 (425)
                                   +++.+...++..+...|+.++|...+++ +++..|+.. ....+.+   +.+++....++.++..|+
T Consensus       248 l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~-~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~  326 (398)
T PRK10747        248 LKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILD-GLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGD  326 (398)
T ss_pred             HHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHH-HHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCC
Confidence                         3444444445555555555555555555 444322222 2222222   444444444444444444


Q ss_pred             chhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcCCC
Q psy1863         329 SIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPT  408 (425)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~  408 (425)
                      +                         +.+.+.+|.++...|++++|.+.|+++.+..|+.+..+.....  -...|  ..
T Consensus       327 ~-------------------------~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~--~~~~g--~~  377 (398)
T PRK10747        327 T-------------------------PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADA--LDRLH--KP  377 (398)
T ss_pred             C-------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHH--HHHcC--CH
Confidence            4                         4566667888888888888888888886666544332222222  22333  67


Q ss_pred             CcHHHHHHhHhHHh
Q psy1863         409 SEVPIYLENLLTVL  422 (425)
Q Consensus       409 ~ea~~~~~~~l~~~  422 (425)
                      +++..++.+.+...
T Consensus       378 ~~A~~~~~~~l~~~  391 (398)
T PRK10747        378 EEAAAMRRDGLMLT  391 (398)
T ss_pred             HHHHHHHHHHHhhh
Confidence            78888888877643

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.70  E-value=7.3e-16  Score=123.81  Aligned_cols=121  Identities=16%  Similarity=0.190  Sum_probs=113.3

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy1863         186 EKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP  265 (425)
Q Consensus       186 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  265 (425)
                      ...++++++.+|++   +..+|.++...|++++|+.+|++++..+|.+..++.++|.++...|++++|+..|++++..+|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            56899999999885   567899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh
Q psy1863         266 SMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE  310 (425)
Q Consensus       266 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~  310 (425)
                      +++.+++++|.++..+|++++|+..|++ ++...|+++  +...+.+
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~-Al~~~p~~~~~~~~~~~~  135 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAREAFQT-AIKMSYADASWSEIRQNA  135 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCChHHHHHHHHH
Confidence            9999999999999999999999999999 999999998  5555443

>KOG1125|consensus

Probab=99.69  E-value=1.8e-15  Score=139.57  Aligned_cols=230  Identities=13%  Similarity=0.126  Sum_probs=170.2

Q ss_pred             HHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHHHHHHH
Q psy1863          19 IDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEAEKC   98 (425)
Q Consensus        19 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~   98 (425)
                      .+.|+.+..+|+..+|.=.|..|++.+        |....++.-||++-..-+.                   ...+...
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqd--------P~haeAW~~LG~~qaENE~-------------------E~~ai~A  341 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQD--------PQHAEAWQKLGITQAENEN-------------------EQNAISA  341 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhC--------hHHHHHHHHhhhHhhhccc-------------------hHHHHHH
Confidence            467888889999999998888888877        6666666666766654221                   1112222


Q ss_pred             HHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc-cchHHHHHHHH----
Q psy1863          99 ILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD-EMTSSAATNLS----  173 (425)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~lg----  173 (425)
                      +..+.++                         .+-..++.+.+|..|...|.-.+|..++.+.+ ...+..+...+    
T Consensus       342 L~rcl~L-------------------------dP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~  396 (579)
T KOG1125|consen  342 LRRCLEL-------------------------DPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENE  396 (579)
T ss_pred             HHHHHhc-------------------------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccc
Confidence            2222211                         22345667888899999998889999888887 11111111110    


Q ss_pred             -----HHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH
Q psy1863         174 -----FIYFLQGEVEQAEKMAEEACTADT--YNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKH  246 (425)
Q Consensus       174 -----~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  246 (425)
                           ........+..-.+.|-.+....|  .++++...||.+|...|+|++|+.+|+.||...|++...|+.||-.+..
T Consensus       397 ~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN  476 (579)
T KOG1125|consen  397 DFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN  476 (579)
T ss_pred             cccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC
Confidence                 011111223445566777777777  6889999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcc
Q psy1863         247 LNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRN  301 (425)
Q Consensus       247 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~  301 (425)
                      ..+.++|+..|.+|+++.|....+++++|.+++.+|.|++|+.+|-. ++.+.+.
T Consensus       477 ~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~-AL~mq~k  530 (579)
T KOG1125|consen  477 GNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE-ALSMQRK  530 (579)
T ss_pred             CcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH-HHHhhhc
Confidence            99999999999999999999999999999999999999999999999 8887654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.69  E-value=1.6e-13  Score=138.58  Aligned_cols=277  Identities=12%  Similarity=0.028  Sum_probs=193.8

Q ss_pred             HHHHHHcCCHHHHHHHHHhcc-cch--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHH
Q psy1863         142 AVTFLRMNDVSQAVDVLKSCD-EMT--SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVK  218 (425)
Q Consensus       142 a~~~~~~g~~~~A~~~~~~~~-~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  218 (425)
                      +.++...|+.++|+.++++++ |.+  ......+|.++..+|++++|++.|+++++.+|+++.++..++.++...++.++
T Consensus        75 l~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~e  154 (822)
T PRK14574         75 LQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGV  154 (822)
T ss_pred             HHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHH
Confidence            445556699999999999998 444  44455558899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy1863         219 GKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEA  298 (425)
Q Consensus       219 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~  298 (425)
                      |+..++++...+|..... ..++.++...++..+|+..+++++..+|++..++..+..++...|-...|.+...+ --..
T Consensus       155 Al~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~-~p~~  232 (822)
T PRK14574        155 VLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE-NPNL  232 (822)
T ss_pred             HHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh-Cccc
Confidence            999999999999985554 55666666678887899999999999999999999999999999999999887776 3322


Q ss_pred             CcchH--H---------HHHHHh----------hHHHHHHHHHHHHhhcCCchh---hHhhchHHH------------HH
Q psy1863         299 VRNDA--L---------SQLHRE----------MKHEAEKCILTSAKLIAPSIE---DNFSNGYNW------------CV  342 (425)
Q Consensus       299 ~p~~~--~---------~~l~~~----------~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~------------~~  342 (425)
                      .....  +         .+.+..          -.+.|+..++..+...+..+.   .+...-.+.            ++
T Consensus       233 f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi  312 (822)
T PRK14574        233 VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLI  312 (822)
T ss_pred             cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence            21111  1         111111          335566777777764443322   111111111            11


Q ss_pred             HHhHHhh--chhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccC---Cccch---hHHHHHhhhccCcCCCCcHHHH
Q psy1863         343 QSIRNSA--HSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSS---AATNL---SFIYFLVSSEFQYLPTSEVPIY  414 (425)
Q Consensus       343 ~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l---~~~~~l~~~~~~~~~~~ea~~~  414 (425)
                      .......  ..++..-+....|..|+..++.++|+.+|+.+.+..+.   .+..+   .-+++-   .+-....++|..+
T Consensus       313 ~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA---~ld~e~~~~A~~~  389 (822)
T PRK14574        313 KEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS---LNESEQLDKAYQF  389 (822)
T ss_pred             HHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHH---HHhcccHHHHHHH
Confidence            1111111  11222334556899999999999999999998654421   12222   223332   3333467789999


Q ss_pred             HHhHhHHhh
Q psy1863         415 LENLLTVLQ  423 (425)
Q Consensus       415 ~~~~l~~~~  423 (425)
                      ++++.+..|
T Consensus       390 l~~~~~~~p  398 (822)
T PRK14574        390 AVNYSEQTP  398 (822)
T ss_pred             HHHHHhcCC
Confidence            999887554

>PLN02789 farnesyltranstransferase

Probab=99.68  E-value=1.7e-14  Score=130.64  Aligned_cols=171  Identities=11%  Similarity=0.022  Sum_probs=150.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q psy1863         166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE-DYVKGKELYVHALDNDATCIEALYNLGLAH  244 (425)
Q Consensus       166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~la~~~  244 (425)
                      ..++..+-.++...++.++|+..+.+++.++|.+..+|...+.++..+| ++++++..+.+++..+|.+..+|++.+.++
T Consensus        37 ~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l  116 (320)
T PLN02789         37 REAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLA  116 (320)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHH
Confidence            3444444445666789999999999999999999999999999999998 689999999999999999999999999999


Q ss_pred             HHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh--h-------
Q psy1863         245 KHLNEY--SDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE--M-------  311 (425)
Q Consensus       245 ~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~--~-------  311 (425)
                      ...|+.  ++++.+++++++.+|.+..+|...+.++...|++++|++++.+ +++.+|.+.  |...+.+  .       
T Consensus       117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~-~I~~d~~N~sAW~~R~~vl~~~~~l~~~  195 (320)
T PLN02789        117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQ-LLEEDVRNNSAWNQRYFVITRSPLLGGL  195 (320)
T ss_pred             HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHCCCchhHHHHHHHHHHhccccccc
Confidence            999874  7889999999999999999999999999999999999999999 999999988  6666554  1       


Q ss_pred             ---HHHHHHHHHHHHhhcCCchhhHhhch
Q psy1863         312 ---KHEAEKCILTSAKLIAPSIEDNFSNG  337 (425)
Q Consensus       312 ---~~~A~~~~~~a~~~~~~~~~~~~~~~  337 (425)
                         .++++.+..+++..+|.+...+...+
T Consensus       196 ~~~~e~el~y~~~aI~~~P~N~SaW~Yl~  224 (320)
T PLN02789        196 EAMRDSELKYTIDAILANPRNESPWRYLR  224 (320)
T ss_pred             cccHHHHHHHHHHHHHhCCCCcCHHHHHH
Confidence               25678888899999999887776665

>TIGR00540 hemY_coli hemY protein

Probab=99.68  E-value=1.1e-13  Score=131.61  Aligned_cols=259  Identities=10%  Similarity=-0.014  Sum_probs=198.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHh
Q psy1863         138 EINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS-AAFVNLGNCAMAR  213 (425)
Q Consensus       138 ~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~  213 (425)
                      .+..|...+..|+++.|.+.+.++.   |.....+...|.++..+|+++.|..++.++.+..|++. .+....+.++...
T Consensus        87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~  166 (409)
T TIGR00540        87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ  166 (409)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence            3677999999999999999999887   55666777889999999999999999999999999885 5667779999999


Q ss_pred             cCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH----HHHHHHHHcCCHHHHHH
Q psy1863         214 EDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLY----QIASLYEITGDVEQASD  289 (425)
Q Consensus       214 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~g~~~~A~~  289 (425)
                      |+++.|...++..++..|+++.++..++.++...|++++|.+.+.+..+..+.++....    ....-....+..+++..
T Consensus       167 ~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~  246 (409)
T TIGR00540       167 NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGID  246 (409)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            99999999999999999999999999999999999999999999999987654444332    22222234455555666


Q ss_pred             HHHHHHHhcCcc----hH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHH
Q psy1863         290 VNENLLLEAVRN----DA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLE  358 (425)
Q Consensus       290 ~~~~~a~~~~p~----~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (425)
                      .+.+ +....|.    ++  +..++..     ++++|...++++++..|++....+.                       
T Consensus       247 ~L~~-~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-----------------------  302 (409)
T TIGR00540       247 GLLN-WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-----------------------  302 (409)
T ss_pred             HHHH-HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-----------------------
Confidence            7777 7777774    44  4445444     9999999999999999987542211                       


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcCCCCcHHHHHHh--HhHH
Q psy1863         359 INKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLEN--LLTV  421 (425)
Q Consensus       359 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~--~l~~  421 (425)
                      .-........++.+++++.+++..+..|.+|+ ...+..+..-.++.....+|.+|+++  .++.
T Consensus       303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~-~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~  366 (409)
T TIGR00540       303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPK-CCINRALGQLLMKHGEFIEAADAFKNVAACKE  366 (409)
T ss_pred             HHHHhhhcCCCChHHHHHHHHHHHHhCCCChh-HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc
Confidence            11122234457778889999999888887773 23333333334555578899999994  5544

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.67  E-value=9e-15  Score=128.81  Aligned_cols=164  Identities=16%  Similarity=0.154  Sum_probs=146.0

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHH---H
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS---AAFVNLGNCAMAREDYVKGKELYVHALDNDATCIE---A  236 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~  236 (425)
                      +..+..++.+|..++..|++++|+..+++++..+|.++   .+++.+|.++...|++++|+..|+++++.+|+++.   +
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            56788999999999999999999999999999999876   57899999999999999999999999999998765   7


Q ss_pred             HHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHH
Q psy1863         237 LYNLGLAHKHL--------NEYSDSLECFHKLQAIVPSMPEVL-----------------YQIASLYEITGDVEQASDVN  291 (425)
Q Consensus       237 ~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~~A~~~~  291 (425)
                      ++.+|.++...        |++++|+..|++++..+|++..++                 ..+|.++...|++.+|+..+
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~  189 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRF  189 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            89999999986        889999999999999999876442                 36788899999999999999


Q ss_pred             HHHHHhcCcchH-----HHHHHHh-----hHHHHHHHHHHHHhhcC
Q psy1863         292 ENLLLEAVRNDA-----LSQLHRE-----MKHEAEKCILTSAKLIA  327 (425)
Q Consensus       292 ~~~a~~~~p~~~-----~~~l~~~-----~~~~A~~~~~~a~~~~~  327 (425)
                      ++ ++...|+++     +..++.+     ++++|..+++......|
T Consensus       190 ~~-al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       190 ET-VVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HH-HHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            99 999988754     6677776     89999998888877665

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.66  E-value=1.1e-14  Score=123.35  Aligned_cols=153  Identities=17%  Similarity=0.120  Sum_probs=132.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHH
Q psy1863         141 KAVTFLRMNDVSQAVDVLKSCD-EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKG  219 (425)
Q Consensus       141 ~a~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  219 (425)
                      -+..|+..|+++......+... +..         -+...++.++++..+++++..+|++...|..+|.++...|++++|
T Consensus        22 ~~~~Y~~~g~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A   92 (198)
T PRK10370         22 CVGSYLLSPKWQAVRAEYQRLADPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNA   92 (198)
T ss_pred             HHHHHHHcchHHHHHHHHHHHhCccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            3567888898887655443332 211         111367889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcCcHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy1863         220 KELYVHALDNDATCIEALYNLGLAH-KHLNE--YSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLL  296 (425)
Q Consensus       220 ~~~~~~al~~~~~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~  296 (425)
                      +..|+++++++|+++.++..+|.++ ...|+  +++|...++++++.+|+++.+++.+|.++...|++++|+.+|++ ++
T Consensus        93 ~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~-aL  171 (198)
T PRK10370         93 LLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK-VL  171 (198)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH-HH
Confidence            9999999999999999999999975 67787  59999999999999999999999999999999999999999999 99


Q ss_pred             hcCcchH
Q psy1863         297 EAVRNDA  303 (425)
Q Consensus       297 ~~~p~~~  303 (425)
                      +..|.+.
T Consensus       172 ~l~~~~~  178 (198)
T PRK10370        172 DLNSPRV  178 (198)
T ss_pred             hhCCCCc
Confidence            9988766

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.66  E-value=5.2e-13  Score=126.43  Aligned_cols=216  Identities=12%  Similarity=0.001  Sum_probs=168.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH--------HHH
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFV--------NLG  207 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--------~la  207 (425)
                      +..+..+...|+++.|...++++.   |.++.++..++.+|...|++++|+..+.+..+..+.++....        .+.
T Consensus       157 l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~  236 (398)
T PRK10747        157 ITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLM  236 (398)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            344888999999999999999988   899999999999999999999999999888887766544322        222


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy1863         208 NCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA  287 (425)
Q Consensus       208 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  287 (425)
                      .......+-+...++++..-...|+++.+...++..+...|+.++|...++++++. |.++......+.+  ..++.+++
T Consensus       237 ~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~a  313 (398)
T PRK10747        237 DQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQL  313 (398)
T ss_pred             HHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHH
Confidence            22222333444444455544556778999999999999999999999999999994 4466544444443  44999999


Q ss_pred             HHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHH
Q psy1863         288 SDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEIN  360 (425)
Q Consensus       288 ~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (425)
                      +...++ .++.+|+++  +..+|.+     ++.+|..+|+++++..|+..                          .+..
T Consensus       314 l~~~e~-~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~--------------------------~~~~  366 (398)
T PRK10747        314 EKVLRQ-QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY--------------------------DYAW  366 (398)
T ss_pred             HHHHHH-HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH--------------------------HHHH
Confidence            999999 999999999  6677777     89999999999999988753                          2345


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhh
Q psy1863         361 KAVTFLRMNDVSQAVDVLKSCDEM  384 (425)
Q Consensus       361 la~~~~~~g~~~~A~~~~~~~~~~  384 (425)
                      ++.++.+.|+.++|.++|++...+
T Consensus       367 La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        367 LADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhh
Confidence            788999999999999999998543

>KOG0548|consensus

Probab=99.66  E-value=2.2e-14  Score=131.43  Aligned_cols=237  Identities=15%  Similarity=0.148  Sum_probs=182.4

Q ss_pred             HHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHH
Q psy1863          13 QEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMK   92 (425)
Q Consensus        13 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~   92 (425)
                      .+.+...+.+...+...+|..|++.+..++.++.         ..+..++.+.+|...|.+..--....|   ..+.++.
T Consensus       222 ~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~---------~it~~~n~aA~~~e~~~~~~c~~~c~~---a~E~gre  289 (539)
T KOG0548|consen  222 EKAHKEKELGNAAYKKKDFETAIQHYAKALELAT---------DITYLNNIAAVYLERGKYAECIELCEK---AVEVGRE  289 (539)
T ss_pred             HhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhh---------hhHHHHHHHHHHHhccHHHHhhcchHH---HHHHhHH
Confidence            4566777888889999999999999999988772         223345555666555543300000000   0000000


Q ss_pred             HHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc--cchHHHHH
Q psy1863          93 HEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD--EMTSSAAT  170 (425)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~--~~~~~~~~  170 (425)
                      ..+.                     |..             .......+|..+...++++.|+.+|.+++  ...     
T Consensus       290 ~rad---------------------~kl-------------Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----  330 (539)
T KOG0548|consen  290 LRAD---------------------YKL-------------IAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----  330 (539)
T ss_pred             HHHH---------------------HHH-------------HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----
Confidence            0000                     000             11112336888888999999999999988  222     


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCH
Q psy1863         171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEY  250 (425)
Q Consensus       171 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  250 (425)
                        ..+.......++++...+...-.+|.-..--..-|+.++..|+|..|+..|.+++..+|+++..|.|.|.||.++|.+
T Consensus       331 --~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~  408 (539)
T KOG0548|consen  331 --PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEY  408 (539)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhH
Confidence              555566677788888888888888988888888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         251 SDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       251 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      ..|+..++++++++|+...+|...|.++..+.+|++|.+.|++ +++.+|++.
T Consensus       409 ~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e-ale~dp~~~  460 (539)
T KOG0548|consen  409 PEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE-ALELDPSNA  460 (539)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhH
Confidence            9999999999999999999999999999999999999999999 999999876

>KOG4162|consensus

Probab=99.65  E-value=3.1e-13  Score=128.63  Aligned_cols=311  Identities=13%  Similarity=0.100  Sum_probs=214.1

Q ss_pred             HHHHHhhH-HhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHHHH
Q psy1863          17 GLIDESCI-CARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEA   95 (425)
Q Consensus        17 ~l~~~~~~-~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~   95 (425)
                      -++-.+.+ .-.-|..+++++.+.+|+..-.   ..++......++-+|++|....+-.|     .+..+..   .....
T Consensus       395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~---~~~~~l~~~~~l~lGi~y~~~A~~a~-----~~seR~~---~h~ks  463 (799)
T KOG4162|consen  395 VLLMASKLCIERLKLVEEGLDYAQKAISLLG---GQRSHLKPRGYLFLGIAYGFQARQAN-----LKSERDA---LHKKS  463 (799)
T ss_pred             HHHHHHHHHHhchhhhhhHHHHHHHHHHHhh---hhhhhhhhhHHHHHHHHHHhHhhcCC-----ChHHHHH---HHHHH
Confidence            34444444 4678999999999999998552   22223334567788899886554331     1111111   11122


Q ss_pred             HHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc----cchHHHHHH
Q psy1863          96 EKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD----EMTSSAATN  171 (425)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~  171 (425)
                      ...+..+...                         .+....+.+.++..|..+++.+.|....++++    ...+.+|..
T Consensus       464 lqale~av~~-------------------------d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whL  518 (799)
T KOG4162|consen  464 LQALEEAVQF-------------------------DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHL  518 (799)
T ss_pred             HHHHHHHHhc-------------------------CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHH
Confidence            2222222111                         11123556888999999999999999999998    678899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc--------------------
Q psy1863         172 LSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDA--------------------  231 (425)
Q Consensus       172 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--------------------  231 (425)
                      ++.++...+++.+|+...+.++...|+|.........+-...++.++|+..+...+.+..                    
T Consensus       519 LALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~  598 (799)
T KOG4162|consen  519 LALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAG  598 (799)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcc
Confidence            999999999999999999999999988766555555555555666666655555443311                    


Q ss_pred             --------------------------------------------Cc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1863         232 --------------------------------------------TC-----IEALYNLGLAHKHLNEYSDSLECFHKLQA  262 (425)
Q Consensus       232 --------------------------------------------~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~  262 (425)
                                                                  +.     ...|...+..+...++.++|..|+.++-.
T Consensus       599 l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~  678 (799)
T KOG4162|consen  599 LHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK  678 (799)
T ss_pred             cccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Confidence                                                        10     22455667777777777777777777777


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-------hHHHHHHHHHHHHhhcCCchhhH
Q psy1863         263 IVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-------MKHEAEKCILTSAKLIAPSIEDN  333 (425)
Q Consensus       263 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-------~~~~A~~~~~~a~~~~~~~~~~~  333 (425)
                      +.|..+..|+..|.++...|+..+|.+.|.. ++.++|+++  ...+|.+       ...++......+++++|.+    
T Consensus       679 ~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~-Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n----  753 (799)
T KOG4162|consen  679 IDPLSASVYYLRGLLLEVKGQLEEAKEAFLV-ALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLN----  753 (799)
T ss_pred             cchhhHHHHHHhhHHHHHHHhhHHHHHHHHH-HHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCC----
Confidence            7777777777777777777777777777777 777777777  5566655       3333333667777776665    


Q ss_pred             hhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCc
Q psy1863         334 FSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAA  389 (425)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  389 (425)
                                           .++|+.+|.++...|+.++|.++|..+..+.+..|
T Consensus       754 ---------------------~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  754 ---------------------HEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             ---------------------HHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence                                 45666778999999999999999999988877766

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.65  E-value=1.5e-12  Score=112.29  Aligned_cols=209  Identities=12%  Similarity=0.106  Sum_probs=173.8

Q ss_pred             hHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc--c-----chHHHHHHHHHHHHHcCCHHHHHHHH
Q psy1863         117 GYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD--E-----MTSSAATNLSFIYFLQGEVEQAEKMA  189 (425)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~--~-----~~~~~~~~lg~~~~~~g~~~~A~~~~  189 (425)
                      +.+-+.+.++.   .+...+..+.+|..+...|..+.||.+-+..+  |     ....+...||.-|+..|-++.|...|
T Consensus        54 AvdlF~e~l~~---d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f  130 (389)
T COG2956          54 AVDLFLEMLQE---DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIF  130 (389)
T ss_pred             HHHHHHHHHhc---CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            34444455543   34456777899999999999999999888777  3     34568889999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy1863         190 EEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC-----IEALYNLGLAHKHLNEYSDSLECFHKLQAIV  264 (425)
Q Consensus       190 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  264 (425)
                      ....+....-..+...|..+|....+|++|+...++..++.+..     +..+..++..+....+.+.|+..+.++++.+
T Consensus       131 ~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~  210 (389)
T COG2956         131 NQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD  210 (389)
T ss_pred             HHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC
Confidence            99887777777889999999999999999999999999987765     6678889999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH---HHHHHHh-----hHHHHHHHHHHHHhhcCCc
Q psy1863         265 PSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA---LSQLHRE-----MKHEAEKCILTSAKLIAPS  329 (425)
Q Consensus       265 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~---~~~l~~~-----~~~~A~~~~~~a~~~~~~~  329 (425)
                      |....+-..+|.++...|++++|++.++. +++.+|+..   +..|..+     +.++...++.++.+..+..
T Consensus       211 ~~cvRAsi~lG~v~~~~g~y~~AV~~~e~-v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~  282 (389)
T COG2956         211 KKCVRASIILGRVELAKGDYQKAVEALER-VLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA  282 (389)
T ss_pred             ccceehhhhhhHHHHhccchHHHHHHHHH-HHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence            99999999999999999999999999999 999998876   3333333     7777777888777776654

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.63  E-value=4.2e-13  Score=125.95  Aligned_cols=163  Identities=12%  Similarity=0.071  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hcCCCCHHHHHHHHH
Q psy1863         136 DLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEAC----TADTYNSAAFVNLGN  208 (425)
Q Consensus       136 ~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~~la~  208 (425)
                      +.....|..+...|++++|...+++++   |.+..++.. +..+...|++..+.....+++    ..+|....+...+|.
T Consensus        44 e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~  122 (355)
T cd05804          44 ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAF  122 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHH
Confidence            334455666666666666666666666   555555443 444444433333333333332    344555556666666


Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCH
Q psy1863         209 CAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMP----EVLYQIASLYEITGDV  284 (425)
Q Consensus       209 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~  284 (425)
                      ++..+|++++|+..++++++..|+++.++..+|.++...|++++|+.++++++...|..+    ..+..+|.++...|++
T Consensus       123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~  202 (355)
T cd05804         123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY  202 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH
Confidence            666666666666666666666666666666666666666666666666666666655322    2344566666666666


Q ss_pred             HHHHHHHHHHHHhcCc
Q psy1863         285 EQASDVNENLLLEAVR  300 (425)
Q Consensus       285 ~~A~~~~~~~a~~~~p  300 (425)
                      ++|+..|++ +....|
T Consensus       203 ~~A~~~~~~-~~~~~~  217 (355)
T cd05804         203 EAALAIYDT-HIAPSA  217 (355)
T ss_pred             HHHHHHHHH-Hhcccc
Confidence            666666666 654444

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.63  E-value=1.9e-13  Score=117.66  Aligned_cols=264  Identities=16%  Similarity=0.134  Sum_probs=205.4

Q ss_pred             HHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHHHHHHH
Q psy1863          19 IDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEAEKC   98 (425)
Q Consensus        19 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~   98 (425)
                      ...+.-+.-+.+-++|.+.|.+.++.+        |.+...+..+|-.|..-|...                      +.
T Consensus        39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d--------~~t~e~~ltLGnLfRsRGEvD----------------------RA   88 (389)
T COG2956          39 YVKGLNFLLSNQPDKAVDLFLEMLQED--------PETFEAHLTLGNLFRSRGEVD----------------------RA   88 (389)
T ss_pred             HHhHHHHHhhcCcchHHHHHHHHHhcC--------chhhHHHHHHHHHHHhcchHH----------------------HH
Confidence            334555666788899999998888766        555555555555555545332                      11


Q ss_pred             HHHhhhhh-hhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHH
Q psy1863          99 ILTSAKLI-APSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSF  174 (425)
Q Consensus        99 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~  174 (425)
                      |..=..++ +|.+..                   ....-....+|.-|+..|-++.|...|....   .....+...|-.
T Consensus        89 IRiHQ~L~~spdlT~-------------------~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~  149 (389)
T COG2956          89 IRIHQTLLESPDLTF-------------------EQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLN  149 (389)
T ss_pred             HHHHHHHhcCCCCch-------------------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence            11000010 011100                   0012234688999999999999999999998   345678899999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC
Q psy1863         175 IYFLQGEVEQAEKMAEEACTADTYNS-----AAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNE  249 (425)
Q Consensus       175 ~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  249 (425)
                      +|....+|++|++..++..++.|...     ..+..++..+....+.+.|+..+.++++.+|++..+-..+|.++...|+
T Consensus       150 IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~  229 (389)
T COG2956         150 IYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGD  229 (389)
T ss_pred             HHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccc
Confidence            99999999999999999999987653     4588899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH-HHHHHHh-----hHHHHHHHHHHH
Q psy1863         250 YSDSLECFHKLQAIVPSM-PEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA-LSQLHRE-----MKHEAEKCILTS  322 (425)
Q Consensus       250 ~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~-~~~l~~~-----~~~~A~~~~~~a  322 (425)
                      |+.|++.++.+++.+|+. +.+...|..||..+|+.++...++.+ +.+..++.. ...+..+     ..+.|..++.+-
T Consensus       230 y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~-~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Q  308 (389)
T COG2956         230 YQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR-AMETNTGADAELMLADLIELQEGIDAAQAYLTRQ  308 (389)
T ss_pred             hHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHccCCccHHHHHHHHHHHhhChHHHHHHHHHH
Confidence            999999999999999985 56888999999999999999999999 999888766 3333333     777888888888


Q ss_pred             HhhcCCchhh
Q psy1863         323 AKLIAPSIED  332 (425)
Q Consensus       323 ~~~~~~~~~~  332 (425)
                      ++..|+....
T Consensus       309 l~r~Pt~~gf  318 (389)
T COG2956         309 LRRKPTMRGF  318 (389)
T ss_pred             HhhCCcHHHH
Confidence            8888876543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.63  E-value=5.1e-13  Score=134.93  Aligned_cols=279  Identities=10%  Similarity=0.066  Sum_probs=197.1

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy1863         134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCA  210 (425)
Q Consensus       134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (425)
                      ..+..+..+.+..+.|+++.|+..|++++   |.++.+...+..++...|+.++|+.++++++...|........+|.++
T Consensus        33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly  112 (822)
T PRK14574         33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY  112 (822)
T ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence            34556888999999999999999999999   776544448888999999999999999999944455566666668899


Q ss_pred             HHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy1863         211 MAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDV  290 (425)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  290 (425)
                      ...|++++|+..|+++++.+|+++.++..++.++...++.++|+..++++...+|.+... ..++.++...++..+|+..
T Consensus       113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~  191 (822)
T PRK14574        113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQA  191 (822)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999985554 5566666667888779999


Q ss_pred             HHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHh--hc---------------------hHHH
Q psy1863         291 NENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNF--SN---------------------GYNW  340 (425)
Q Consensus       291 ~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~--~~---------------------~~~~  340 (425)
                      +++ +++.+|++.  +..+...     -...|.+...+    .|+.+....  .+                     .+..
T Consensus       192 ~ek-ll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~----~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~  266 (822)
T PRK14574        192 SSE-AVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE----NPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI  266 (822)
T ss_pred             HHH-HHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh----CccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence            999 999999988  3333222     22233322222    221111000  00                     0001


Q ss_pred             HHHHhH------H-hhchh----hhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcCCCC
Q psy1863         341 CVQSIR------N-SAHSS----LAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTS  409 (425)
Q Consensus       341 ~~~~~~------~-~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~  409 (425)
                      +...+.      . -...|    ....+.+..-.++...|++.+++..|+.+.......|.......  ....+......
T Consensus       267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~--adayl~~~~P~  344 (822)
T PRK14574        267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA--ASAYIDRRLPE  344 (822)
T ss_pred             HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH--HHHHHhcCCcH
Confidence            111110      0 00111    12334456677888999999999999998654444455433211  13344555677


Q ss_pred             cHHHHHHhHhH
Q psy1863         410 EVPIYLENLLT  420 (425)
Q Consensus       410 ea~~~~~~~l~  420 (425)
                      +|...+..++.
T Consensus       345 kA~~l~~~~~~  355 (822)
T PRK14574        345 KAAPILSSLYY  355 (822)
T ss_pred             HHHHHHHHHhh
Confidence            77777777654

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.62  E-value=5e-13  Score=136.25  Aligned_cols=276  Identities=11%  Similarity=0.005  Sum_probs=202.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcC
Q psy1863         137 LEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD-TYNSAAFVNLGNCAMARED  215 (425)
Q Consensus       137 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~  215 (425)
                      ++..+...|.+.|++++|..+|++..+.+..+|+.+...|...|++++|+..|++..+.. ..+..++..+...+...|+
T Consensus       261 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~  340 (697)
T PLN03081        261 VSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL  340 (697)
T ss_pred             eHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            345667889999999999999999887788899999999999999999999999987654 3366788999999999999


Q ss_pred             HHHHHHHHHHHHhcC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863         216 YVKGKELYVHALDND-ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENL  294 (425)
Q Consensus       216 ~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  294 (425)
                      +++|...+..+++.. +.+..++..+...|.+.|++++|...|++..+   .+..+|..+...|.+.|+.++|++.|++ 
T Consensus       341 ~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~-  416 (697)
T PLN03081        341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFER-  416 (697)
T ss_pred             hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHH-
Confidence            999999999999875 55678889999999999999999999998753   3667899999999999999999999999 


Q ss_pred             HHh--cCcchH-HHHHHHh-----hHHHHHHHHHHHHhhc---CCchhhHhhchHHHHHHHhHHhhch-----hh--hcH
Q psy1863         295 LLE--AVRNDA-LSQLHRE-----MKHEAEKCILTSAKLI---APSIEDNFSNGYNWCVQSIRNSAHS-----SL--AQD  356 (425)
Q Consensus       295 a~~--~~p~~~-~~~l~~~-----~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~  356 (425)
                      ..+  ..|+.. +..+...     ..++|..+|+...+..   |+. ..+..+.-.++..+....+..     +.  ...
T Consensus       417 M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~-~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~  495 (697)
T PLN03081        417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA-MHYACMIELLGREGLLDEAYAMIRRAPFKPTVN  495 (697)
T ss_pred             HHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc-cchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHH
Confidence            665  356655 4333332     8899999999887643   322 111111111111111111111     11  234


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcCCCCcHHHHHHhHhH
Q psy1863         357 LEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLT  420 (425)
Q Consensus       357 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~  420 (425)
                      +|..+...+...|+++.|...+++.....|....   ....+.+........++|.+.++.+.+
T Consensus       496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~---~y~~L~~~y~~~G~~~~A~~v~~~m~~  556 (697)
T PLN03081        496 MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN---NYVVLLNLYNSSGRQAEAAKVVETLKR  556 (697)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCc---chHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            5777888888899999999988888655554333   222333334444567788887776654

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.58  E-value=1.5e-11  Score=127.83  Aligned_cols=282  Identities=12%  Similarity=0.016  Sum_probs=198.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD----EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD-TYNSAAFVNLGNC  209 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~  209 (425)
                      ...+..+...|.+.|++++|..+|+++.    ..+..+|..+...|.+.|++++|+..|++..... ..+..+|..+...
T Consensus       472 ~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a  551 (1060)
T PLN03218        472 CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA  551 (1060)
T ss_pred             HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            3445667778889999999999998887    4467888899999999999999999999887654 2356788889999


Q ss_pred             HHHhcCHHHHHHHHHHHHhc----CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCH
Q psy1863         210 AMAREDYVKGKELYVHALDN----DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV-PSMPEVLYQIASLYEITGDV  284 (425)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~  284 (425)
                      +.+.|++++|...|.++...    .|+ ..+|..+...|.+.|++++|.+.|+.+.+.+ +.+..+|..+...|.+.|++
T Consensus       552 ~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~  630 (1060)
T PLN03218        552 CGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW  630 (1060)
T ss_pred             HHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Confidence            99999999999999988753    444 6678888888999999999999999988876 45678888999999999999


Q ss_pred             HHHHHHHHHHHHhc--CcchH-HHHHHHh-----hHHHHHHHHHHHHhhc-CCchhhHhhchHHHHHHHhHHhhch----
Q psy1863         285 EQASDVNENLLLEA--VRNDA-LSQLHRE-----MKHEAEKCILTSAKLI-APSIEDNFSNGYNWCVQSIRNSAHS----  351 (425)
Q Consensus       285 ~~A~~~~~~~a~~~--~p~~~-~~~l~~~-----~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----  351 (425)
                      ++|...|.+ ..+.  .|+.. +..+...     +.++|...+.++.+.. +.+...+..+...++..+....+..    
T Consensus       631 deAl~lf~e-M~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~e  709 (1060)
T PLN03218        631 DFALSIYDD-MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED  709 (1060)
T ss_pred             HHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            999999998 6654  56544 4444333     8888999998887754 2222222222222221111111111    


Q ss_pred             ------hhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcCCCCcHHHHHHhHhH
Q psy1863         352 ------SLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLT  420 (425)
Q Consensus       352 ------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~  420 (425)
                            .-....|..+...|.+.|++++|++.+++.... .-.|+...+...+ ....+....++|..++..+++
T Consensus       710 M~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sLL-~a~~k~G~le~A~~l~~~M~k  782 (1060)
T PLN03218        710 IKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSILL-VASERKDDADVGLDLLSQAKE  782 (1060)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHH-HHHHHCCCHHHHHHHHHHHHH
Confidence                  112356777888899999999999999887432 2334444443333 333334456666666666654

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.58  E-value=5.7e-14  Score=112.28  Aligned_cols=116  Identities=15%  Similarity=0.185  Sum_probs=97.5

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy1863         187 KMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS  266 (425)
Q Consensus       187 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  266 (425)
                      ..+++++..+|++....+.+|.++...|++++|+..+++++..+|.++.++.++|.++...|++++|+..+++++..+|.
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            45777888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         267 MPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       267 ~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      ++..++.+|.++...|++++|+..+++ +++.+|++.
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~p~~~  119 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKALDL-AIEICGENP  119 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhccccc
Confidence            888888888888888888888888888 888888766

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.58  E-value=1.2e-13  Score=117.07  Aligned_cols=122  Identities=16%  Similarity=0.142  Sum_probs=114.5

Q ss_pred             cCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHhcC--HHHHHH
Q psy1863         148 MNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCA-MARED--YVKGKE  221 (425)
Q Consensus       148 ~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~  221 (425)
                      .++.++++..+++++   |.++..|..+|.+|...|++++|+..|+++++++|+++.++..+|.++ ...|+  +++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            567788899999988   999999999999999999999999999999999999999999999975 67787  599999


Q ss_pred             HHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy1863         222 LYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPE  269 (425)
Q Consensus       222 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  269 (425)
                      .++++++.+|+++.++.++|.++...|++++|+.+|+++++..|.+..
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            999999999999999999999999999999999999999999986554

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.58  E-value=2e-13  Score=135.32  Aligned_cols=154  Identities=12%  Similarity=0.095  Sum_probs=141.4

Q ss_pred             cCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q psy1863         148 MNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL  227 (425)
Q Consensus       148 ~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  227 (425)
                      +....++..+.+.. +..+.++.+||.+....|.+++|...++.+++..|++..+..+++.++.+.+++++|+..+++++
T Consensus        69 ~~~~~~~~~~~~~~-~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l  147 (694)
T PRK15179         69 AAALPELLDYVRRY-PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF  147 (694)
T ss_pred             HhhHHHHHHHHHhc-cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence            33444444444444 78899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       228 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      ..+|+++.+++.+|.++.+.|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|++ +++...+-.
T Consensus       148 ~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~-a~~~~~~~~  222 (694)
T PRK15179        148 SGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQA-GLDAIGDGA  222 (694)
T ss_pred             hcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhhCcch
Confidence            999999999999999999999999999999999999999999999999999999999999999999 988755433

>KOG3060|consensus

Probab=99.57  E-value=1.5e-12  Score=108.53  Aligned_cols=173  Identities=16%  Similarity=0.056  Sum_probs=134.9

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL  242 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  242 (425)
                      ++....+-....+....|+.+-|..++++.....|++..+....|..+...|.+++|+++|+..++-+|++..++...-.
T Consensus        49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlA  128 (289)
T KOG3060|consen   49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLA  128 (289)
T ss_pred             chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHH
Confidence            33344455566666777888888888888777778888888888888888888888888888888888888777777777


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh--------hH
Q psy1863         243 AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE--------MK  312 (425)
Q Consensus       243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~--------~~  312 (425)
                      +...+|+.-+|++.+...++..+.+.++|..++.+|...|++++|.-++++ .+-..|.++  ...++.+        +.
T Consensus       129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE-~ll~~P~n~l~f~rlae~~Yt~gg~eN~  207 (289)
T KOG3060|consen  129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEE-LLLIQPFNPLYFQRLAEVLYTQGGAENL  207 (289)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH-HHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence            777788888888888888888888888888888888888888888888888 887888887  4455554        77


Q ss_pred             HHHHHHHHHHHhhcCCchhhHhhc
Q psy1863         313 HEAEKCILTSAKLIAPSIEDNFSN  336 (425)
Q Consensus       313 ~~A~~~~~~a~~~~~~~~~~~~~~  336 (425)
                      .-|.++|.+++++.|.+...++..
T Consensus       208 ~~arkyy~~alkl~~~~~ral~GI  231 (289)
T KOG3060|consen  208 ELARKYYERALKLNPKNLRALFGI  231 (289)
T ss_pred             HHHHHHHHHHHHhChHhHHHHHHH
Confidence            788888888888888666655544

>KOG0495|consensus

Probab=99.57  E-value=9.3e-12  Score=116.56  Aligned_cols=252  Identities=13%  Similarity=0.067  Sum_probs=199.6

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHhcc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863         134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD--EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM  211 (425)
Q Consensus       134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  211 (425)
                      ..++++....+.+...+++.|..+|.++.  .....+|+.-+.....+|+.++|+.+++++++..|.....|..+|.++.
T Consensus       617 seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e  696 (913)
T KOG0495|consen  617 SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEE  696 (913)
T ss_pred             cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHH
Confidence            67888888888899999999999999998  7778999999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy1863         212 AREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVN  291 (425)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  291 (425)
                      ++++.+.|...|...++..|+.+..|..++.+-.+.|+.-.|...++++.-.+|.+...|.....+-.+.|+.+.|....
T Consensus       697 ~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lm  776 (913)
T KOG0495|consen  697 QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLM  776 (913)
T ss_pred             HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcchH--HHHHHHh-hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhch---------hhhcHHHH
Q psy1863         292 ENLLLEAVRNDA--LSQLHRE-MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHS---------SLAQDLEI  359 (425)
Q Consensus       292 ~~~a~~~~p~~~--~~~l~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~  359 (425)
                      .+ |++-.|++.  |..-..+ ....-..-...+++....+.......+-.+..+.....+..         +...++|.
T Consensus       777 ak-ALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa  855 (913)
T KOG0495|consen  777 AK-ALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWA  855 (913)
T ss_pred             HH-HHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHH
Confidence            99 999999877  3333222 11111222333333344444333333322222222222222         22345555


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhcc
Q psy1863         360 NKAVTFLRMNDVSQAVDVLKSCDEMTS  386 (425)
Q Consensus       360 ~la~~~~~~g~~~~A~~~~~~~~~~~~  386 (425)
                      ..=..+...|.-++-.+.++++....|
T Consensus       856 ~fykfel~hG~eed~kev~~~c~~~EP  882 (913)
T KOG0495|consen  856 WFYKFELRHGTEEDQKEVLKKCETAEP  882 (913)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence            555667778888888888888854443

>KOG0550|consensus

Probab=99.56  E-value=1.2e-13  Score=122.54  Aligned_cols=249  Identities=13%  Similarity=0.108  Sum_probs=203.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy1863         138 EINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE  214 (425)
Q Consensus       138 ~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  214 (425)
                      ....|..+++..+|..|+..|..++   |+++..|.+.+.+++..|+|++|....++.++++|.........+.++...+
T Consensus        52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~  131 (486)
T KOG0550|consen   52 AKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALS  131 (486)
T ss_pred             HHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhH
Confidence            4567889999999999999999999   9999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHH------------hc------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy1863         215 DYVKGKELYVHAL------------DN------DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIAS  276 (425)
Q Consensus       215 ~~~~A~~~~~~al------------~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  276 (425)
                      +..+|...++..-            .+      .|....+...-+.|+...|++++|...--..+++++.+..+++..|.
T Consensus       132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~  211 (486)
T KOG0550|consen  132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGL  211 (486)
T ss_pred             HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccc
Confidence            9888886665321            01      13345566778899999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcCcchH-----HHHHHHh--------------hHHHHHHHHHHHHhhcCCchhhHhhch
Q psy1863         277 LYEITGDVEQASDVNENLLLEAVRNDA-----LSQLHRE--------------MKHEAEKCILTSAKLIAPSIEDNFSNG  337 (425)
Q Consensus       277 ~~~~~g~~~~A~~~~~~~a~~~~p~~~-----~~~l~~~--------------~~~~A~~~~~~a~~~~~~~~~~~~~~~  337 (425)
                      ++...++.+.|+..|++ ++.++|++.     ....-.+              ++..|.++|..++.++|++......+-
T Consensus       212 ~~yy~~~~~ka~~hf~q-al~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY  290 (486)
T KOG0550|consen  212 CLYYNDNADKAINHFQQ-ALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLY  290 (486)
T ss_pred             ccccccchHHHHHHHhh-hhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHH
Confidence            99999999999999999 999999887     1111111              889999999999999999887655442


Q ss_pred             HHHHHH---------HhH----HhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccC
Q psy1863         338 YNWCVQ---------SIR----NSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSS  387 (425)
Q Consensus       338 ~~~~~~---------~~~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  387 (425)
                      +..+.-         ++.    ...+++.....++..|.|+...++|++|++.|+++.+....
T Consensus       291 ~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  291 GNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            222211         111    12333334566778999999999999999999999765544

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.55  E-value=9.5e-13  Score=110.83  Aligned_cols=155  Identities=15%  Similarity=0.133  Sum_probs=133.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARED  215 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  215 (425)
                      ...+..+...|+-+.+..+..++.   +.....+..+|...+..|++..|+..++++....|+++.+|..+|.+|.+.|+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr  149 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR  149 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence            667778888888888887777755   67777777788888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863         216 YVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNEN  293 (425)
Q Consensus       216 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  293 (425)
                      +++|...|.+++++.|..+.+..|+|..+.-.|+++.|..++..+....+.+..+..+++.+....|+++.|...-.+
T Consensus       150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence            999999999999999988999999999999999999999999888888888888888999998899998888776655

>KOG3060|consensus

Probab=99.55  E-value=7.2e-12  Score=104.60  Aligned_cols=168  Identities=14%  Similarity=0.079  Sum_probs=155.4

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM  211 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  211 (425)
                      ..++-....+.+..|+.+-|..++++..   |....+...-|..+...|.+++|+++|+..++-+|.+..++-..-.+..
T Consensus        52 w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk  131 (289)
T KOG3060|consen   52 WTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILK  131 (289)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence            3344466778889999999999999877   8999999999999999999999999999999999999999998888899


Q ss_pred             HhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHH
Q psy1863         212 AREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG---DVEQAS  288 (425)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~  288 (425)
                      .+|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-|+++.+-+.|.++..+..+|.+++.+|   ++.-|.
T Consensus       132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar  211 (289)
T KOG3060|consen  132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR  211 (289)
T ss_pred             HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988876   567899


Q ss_pred             HHHHHHHHhcCcchH
Q psy1863         289 DVNENLLLEAVRNDA  303 (425)
Q Consensus       289 ~~~~~~a~~~~p~~~  303 (425)
                      .+|.+ +++++|.+.
T Consensus       212 kyy~~-alkl~~~~~  225 (289)
T KOG3060|consen  212 KYYER-ALKLNPKNL  225 (289)
T ss_pred             HHHHH-HHHhChHhH
Confidence            99999 999999666

>KOG0553|consensus

Probab=99.53  E-value=2.1e-13  Score=116.83  Aligned_cols=119  Identities=18%  Similarity=0.163  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH
Q psy1863         167 SAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKH  246 (425)
Q Consensus       167 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  246 (425)
                      +-+-.-|.-.+..++|.+|+..|.+||.++|.++..|.+.+.+|.++|.++.|++.++.++.++|.+..+|..||.+|..
T Consensus        82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~  161 (304)
T KOG0553|consen   82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA  161 (304)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence            44556778888888999999999999999999999999999999999999999999999999999989999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q psy1863         247 LNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVE  285 (425)
Q Consensus       247 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  285 (425)
                      +|++++|++.|+++|.++|++...+.+|..+-..++...
T Consensus       162 ~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  162 LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999988888888877776666555

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.53  E-value=2.4e-11  Score=114.01  Aligned_cols=283  Identities=12%  Similarity=0.042  Sum_probs=189.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcc------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863         138 EINKAVTFLRMNDVSQAVDVLKSCD------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM  211 (425)
Q Consensus       138 ~~~~a~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  211 (425)
                      +..+|..+...|+.+.+...+.++.      ..........|.++...|++++|...++++++.+|++..++.. +..+.
T Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~   87 (355)
T cd05804           9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAF   87 (355)
T ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHH
Confidence            4677888888888888877777766      2345567778888999999999999999999999998877665 55555


Q ss_pred             HhcCHHHHHHHHHHHH----hcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy1863         212 AREDYVKGKELYVHAL----DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA  287 (425)
Q Consensus       212 ~~g~~~~A~~~~~~al----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  287 (425)
                      ..|++..+.....+++    ..+|....++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|
T Consensus        88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA  167 (355)
T cd05804          88 GLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEG  167 (355)
T ss_pred             HhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHH
Confidence            5554444444444433    456777778888899999999999999999999999999988999999999999999999


Q ss_pred             HHHHHHHHHhcCcchH------HHHHHHh-----hHHHHHHHHHHHHhhcC--CchhhHhhc---hH------------H
Q psy1863         288 SDVNENLLLEAVRNDA------LSQLHRE-----MKHEAEKCILTSAKLIA--PSIEDNFSN---GY------------N  339 (425)
Q Consensus       288 ~~~~~~~a~~~~p~~~------~~~l~~~-----~~~~A~~~~~~a~~~~~--~~~~~~~~~---~~------------~  339 (425)
                      +.++++ ++...|.++      +..++.+     ++++|...+++++...|  .........   .+            .
T Consensus       168 ~~~l~~-~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~  246 (355)
T cd05804         168 IAFMES-WRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDR  246 (355)
T ss_pred             HHHHHh-hhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHH
Confidence            999999 888876433      3345555     88999999998876555  222111010   00            1


Q ss_pred             H--HHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccC---Cc---cchhHHHHHhhhccCcCCCCcH
Q psy1863         340 W--CVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSS---AA---TNLSFIYFLVSSEFQYLPTSEV  411 (425)
Q Consensus       340 ~--~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~---~~l~~~~~l~~~~~~~~~~~ea  411 (425)
                      |  +....................+.++...|+.++|...++........   ..   ..+...-..--..+......+|
T Consensus       247 w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A  326 (355)
T cd05804         247 WEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATA  326 (355)
T ss_pred             HHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHH
Confidence            1  11110000001122233457888888899999898888887653322   21   1122111111223334467777


Q ss_pred             HHHHHhHhHHh
Q psy1863         412 PIYLENLLTVL  422 (425)
Q Consensus       412 ~~~~~~~l~~~  422 (425)
                      ...+..++...
T Consensus       327 ~~~L~~al~~a  337 (355)
T cd05804         327 LELLGPVRDDL  337 (355)
T ss_pred             HHHHHHHHHHH
Confidence            77777777654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG4162|consensus

Probab=99.52  E-value=1.9e-12  Score=123.36  Aligned_cols=265  Identities=17%  Similarity=0.171  Sum_probs=186.5

Q ss_pred             HHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHHHH--
Q psy1863          18 LIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEA--   95 (425)
Q Consensus        18 l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~--   95 (425)
                      +..-|..+..+++.+.|++.+++++.+.+       -.....++-+.+.+.-.++++....+.+.++.....+-.-..  
T Consensus       481 if~lalq~A~~R~l~sAl~~~~eaL~l~~-------~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~  553 (799)
T KOG4162|consen  481 IFYLALQYAEQRQLTSALDYAREALALNR-------GDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK  553 (799)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence            34446677789999999999999998742       234567788888888888877555555555555544211100  


Q ss_pred             ----------HHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---
Q psy1863          96 ----------EKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---  162 (425)
Q Consensus        96 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---  162 (425)
                                +..+.+....+     .-|..-|. +...+..       ....-..+......++..+|++.++++.   
T Consensus       554 ~~i~~~~~~~e~~l~t~~~~L-----~~we~~~~-~q~~~~~-------g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~  620 (799)
T KOG4162|consen  554 IHIELTFNDREEALDTCIHKL-----ALWEAEYG-VQQTLDE-------GKLLRLKAGLHLALSQPTDAISTSRYLSSLV  620 (799)
T ss_pred             hhhhhhcccHHHHHHHHHHHH-----HHHHhhhh-Hhhhhhh-------hhhhhhhcccccCcccccccchhhHHHHHHH
Confidence                      01111111000     00111000 0000000       0000011111112222222332222221   


Q ss_pred             -------------------c--c-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH
Q psy1863         163 -------------------E--M-----TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDY  216 (425)
Q Consensus       163 -------------------~--~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  216 (425)
                                         |  .     ....|...+..+...+..++|..++.++-.++|..+..|+..|.++...|.+
T Consensus       621 a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~  700 (799)
T KOG4162|consen  621 ASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQL  700 (799)
T ss_pred             HhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhh
Confidence                               1  1     1346778889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863         217 VKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLE--CFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENL  294 (425)
Q Consensus       217 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  294 (425)
                      .+|...|..++.++|+++.+...+|.++...|+..-|..  .+..+++++|.++.+|+.+|.++...|+.++|.++|.- 
T Consensus       701 ~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~a-  779 (799)
T KOG4162|consen  701 EEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQA-  779 (799)
T ss_pred             HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHH-
Confidence            999999999999999999999999999999999888888  99999999999999999999999999999999999999 


Q ss_pred             HHhcCcchH
Q psy1863         295 LLEAVRNDA  303 (425)
Q Consensus       295 a~~~~p~~~  303 (425)
                      ++++.+++|
T Consensus       780 a~qLe~S~P  788 (799)
T KOG4162|consen  780 ALQLEESNP  788 (799)
T ss_pred             HHhhccCCC
Confidence            999998887

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.52  E-value=2.6e-12  Score=108.20  Aligned_cols=166  Identities=16%  Similarity=0.187  Sum_probs=149.6

Q ss_pred             HHHHHHHhcc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q psy1863         153 QAVDVLKSCD--EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND  230 (425)
Q Consensus       153 ~A~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  230 (425)
                      .+..++....  |.+..+ .+++..+...|+-+.+..+..++...+|.+......+|...+..|++.+|+..++++....
T Consensus        52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~  130 (257)
T COG5010          52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA  130 (257)
T ss_pred             HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence            4444555555  888888 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHH
Q psy1863         231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLH  308 (425)
Q Consensus       231 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~  308 (425)
                      |+++.+|..+|.+|.+.|+++.|...|.+++++.|+.+.+..|+|..+...|+++.|..++.. +....+.++  ..+++
T Consensus       131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~-a~l~~~ad~~v~~NLA  209 (257)
T COG5010         131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLP-AYLSPAADSRVRQNLA  209 (257)
T ss_pred             CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHH-HHhCCCCchHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999 888777666  66666


Q ss_pred             Hh-----hHHHHHHHHH
Q psy1863         309 RE-----MKHEAEKCIL  320 (425)
Q Consensus       309 ~~-----~~~~A~~~~~  320 (425)
                      .+     ++..|.....
T Consensus       210 l~~~~~g~~~~A~~i~~  226 (257)
T COG5010         210 LVVGLQGDFREAEDIAV  226 (257)
T ss_pred             HHHhhcCChHHHHhhcc
Confidence            66     7777765543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.52  E-value=6.3e-13  Score=106.20  Aligned_cols=115  Identities=20%  Similarity=0.246  Sum_probs=107.7

Q ss_pred             HHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc
Q psy1863         157 VLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC  233 (425)
Q Consensus       157 ~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  233 (425)
                      .|++++   |.+..+...+|.++...|++++|...+++++..+|.++.++..+|.++...|++++|+.++++++..+|++
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~   84 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD   84 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            455555   77888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy1863         234 IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVL  271 (425)
Q Consensus       234 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  271 (425)
                      +..++.+|.++...|++++|+..|+++++.+|++....
T Consensus        85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  122 (135)
T TIGR02552        85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS  122 (135)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence            99999999999999999999999999999999876643

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.51  E-value=6e-13  Score=104.80  Aligned_cols=102  Identities=11%  Similarity=0.125  Sum_probs=61.0

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL  242 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  242 (425)
                      ++.-+..+.+|..++..|++++|...|+-+...+|.+...|++||.++..+|+|.+|+..|.+++.++|+++.+++++|.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            44445555566666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhC
Q psy1863         243 AHKHLNEYSDSLECFHKLQAIV  264 (425)
Q Consensus       243 ~~~~~g~~~~A~~~~~~al~~~  264 (425)
                      |++..|+.+.|.+.|+.++...
T Consensus       112 c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        112 CYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHh
Confidence            6666666666666666555544

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.51  E-value=9.3e-13  Score=103.73  Aligned_cols=111  Identities=13%  Similarity=0.156  Sum_probs=96.1

Q ss_pred             HHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy1863         192 ACTAD-TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEV  270 (425)
Q Consensus       192 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  270 (425)
                      ...+. ++..+..+.+|..+...|++++|.+.|+-+...+|.++..|++||.++..+|++++|+..|.+++.++|+++.+
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~  105 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA  105 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence            34456 66777888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         271 LYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       271 ~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      ++++|.|+...|+.+.|...|+. ++....+.+
T Consensus       106 ~~~ag~c~L~lG~~~~A~~aF~~-Ai~~~~~~~  137 (157)
T PRK15363        106 PWAAAECYLACDNVCYAIKALKA-VVRICGEVS  137 (157)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH-HHHHhccCh
Confidence            99999999999999999999998 888764444

>KOG1156|consensus

Probab=99.51  E-value=5.7e-12  Score=117.99  Aligned_cols=239  Identities=15%  Similarity=0.185  Sum_probs=183.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy1863         138 EINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE  214 (425)
Q Consensus       138 ~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  214 (425)
                      ++..+.-.+..++|...++..+.++   |.+++.+...|..+...|+-++|..+...++..++.+...|..+|.++...+
T Consensus        10 lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK   89 (700)
T KOG1156|consen   10 LFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK   89 (700)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh
Confidence            3566777788899999999998888   9999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863         215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENL  294 (425)
Q Consensus       215 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  294 (425)
                      +|++|+++|+.|+.+.|++..+|.-++.+..++++++.....-.+.++..|.....|...+..+...|++..|....+. 
T Consensus        90 ~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~e-  168 (700)
T KOG1156|consen   90 KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEE-  168 (700)
T ss_pred             hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999988877 


Q ss_pred             HHhcC---cchH-HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhh-hcHHHHHHHHH
Q psy1863         295 LLEAV---RNDA-LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSL-AQDLEINKAVT  364 (425)
Q Consensus       295 a~~~~---p~~~-~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~la~~  364 (425)
                      ..+..   |+.. +...-.+     -..++- .++++++.                   +........ ........|.+
T Consensus       169 f~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g-~~q~ale~-------------------L~~~e~~i~Dkla~~e~ka~l  228 (700)
T KOG1156|consen  169 FEKTQNTSPSKEDYEHSELLLYQNQILIEAG-SLQKALEH-------------------LLDNEKQIVDKLAFEETKADL  228 (700)
T ss_pred             HHHhhccCCCHHHHHHHHHHHHHHHHHHHcc-cHHHHHHH-------------------HHhhhhHHHHHHHHhhhHHHH
Confidence            55543   3222 2111111     000000 01111111                   000000001 11233457889


Q ss_pred             HHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhh
Q psy1863         365 FLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVS  400 (425)
Q Consensus       365 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~  400 (425)
                      +.+.|++++|+..|..+.   ..+|+++.....+..
T Consensus       229 ~~kl~~lEeA~~~y~~Ll---~rnPdn~~Yy~~l~~  261 (700)
T KOG1156|consen  229 LMKLGQLEEAVKVYRRLL---ERNPDNLDYYEGLEK  261 (700)
T ss_pred             HHHHhhHHhHHHHHHHHH---hhCchhHHHHHHHHH
Confidence            999999999999999984   445666665555433

>KOG0553|consensus

Probab=99.50  E-value=2.9e-13  Score=116.02  Aligned_cols=109  Identities=24%  Similarity=0.292  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy1863         201 AAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI  280 (425)
Q Consensus       201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  280 (425)
                      ..+-.-|+-+++.++|.+|+..|.+||.++|+++..|.+.+.+|.++|.++.|++.++.++.++|....+|..||.+|..
T Consensus        82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~  161 (304)
T KOG0553|consen   82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA  161 (304)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence            34667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhcCcchH--HHHHHHh
Q psy1863         281 TGDVEQASDVNENLLLEAVRNDA--LSQLHRE  310 (425)
Q Consensus       281 ~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~  310 (425)
                      +|++++|++.|++ +++++|++.  +.+|...
T Consensus       162 ~gk~~~A~~aykK-aLeldP~Ne~~K~nL~~A  192 (304)
T KOG0553|consen  162 LGKYEEAIEAYKK-ALELDPDNESYKSNLKIA  192 (304)
T ss_pred             cCcHHHHHHHHHh-hhccCCCcHHHHHHHHHH
Confidence            9999999999999 999999999  5555544

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.50  E-value=5.9e-11  Score=121.12  Aligned_cols=278  Identities=10%  Similarity=-0.010  Sum_probs=145.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhc
Q psy1863         136 DLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADT-YNSAAFVNLGNCAMARE  214 (425)
Q Consensus       136 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g  214 (425)
                      ..+..+...|.+.|+++.|.++|++....+..+|+.+...|...|++++|+..|++..+..+ .+..++..+...+...|
T Consensus       159 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~  238 (697)
T PLN03081        159 YMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG  238 (697)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence            34456677888899999999999888744667888888999999999999999998876542 23344444445555555


Q ss_pred             CHHHHHHHHHHHHhcC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863         215 DYVKGKELYVHALDND-ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNEN  293 (425)
Q Consensus       215 ~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  293 (425)
                      ....+...+..+++.. ..+..++..+...|.+.|++++|...|++.   .+.+..+|..+...|.+.|++++|...|++
T Consensus       239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~  315 (697)
T PLN03081        239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYE  315 (697)
T ss_pred             cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            5555555555554432 123445555555555556666555555543   223445555555555555666666555555


Q ss_pred             HHHh--cCcchH-HHHHHH----h-hHHHHHHHHHHHHhhc-CCchhhHhhchHHHHHHHhHHhhchh------hhcHHH
Q psy1863         294 LLLE--AVRNDA-LSQLHR----E-MKHEAEKCILTSAKLI-APSIEDNFSNGYNWCVQSIRNSAHSS------LAQDLE  358 (425)
Q Consensus       294 ~a~~--~~p~~~-~~~l~~----~-~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  358 (425)
                       ...  ..|+.. +..+..    . ..++|.+.+..+.+.. +.+......+.-.++..+....+...      -....|
T Consensus       316 -M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~  394 (697)
T PLN03081        316 -MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISW  394 (697)
T ss_pred             -HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeH
Confidence             332  223333 222221    1 5555555555555443 11211111111111111111111111      122345


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcCCCCcHHHHHHhHh
Q psy1863         359 INKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLL  419 (425)
Q Consensus       359 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l  419 (425)
                      ..+...|.+.|+.++|++.|++..+. ...|+...+...+ .........+++..+++.+.
T Consensus       395 n~lI~~y~~~G~~~~A~~lf~~M~~~-g~~Pd~~T~~~ll-~a~~~~g~~~~a~~~f~~m~  453 (697)
T PLN03081        395 NALIAGYGNHGRGTKAVEMFERMIAE-GVAPNHVTFLAVL-SACRYSGLSEQGWEIFQSMS  453 (697)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCCHHHHHHHH-HHHhcCCcHHHHHHHHHHHH
Confidence            55666666666666666666665321 2233333333333 22333334455555555544

>PLN03077 Protein ECB2; Provisional

Probab=99.49  E-value=2.9e-11  Score=126.31  Aligned_cols=279  Identities=11%  Similarity=-0.027  Sum_probs=193.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHH
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD--TYNSAAFVNLGNCAMA  212 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~  212 (425)
                      ..++..+...|.+.|++++|..+|++....+..+|..+...|.+.|++++|+..|++.....  |+. .++..+-..+..
T Consensus       323 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~-~t~~~ll~a~~~  401 (857)
T PLN03077        323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE-ITIASVLSACAC  401 (857)
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc-eeHHHHHHHHhc
Confidence            45567788899999999999999999875567789999999999999999999999886654  544 455566668889


Q ss_pred             hcCHHHHHHHHHHHHhcCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy1863         213 REDYVKGKELYVHALDNDA-TCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVN  291 (425)
Q Consensus       213 ~g~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  291 (425)
                      .|++++|.+.+..+.+... .+..++..+...|.+.|++++|.+.|++..+   .+..+|..+...|...|+.++|+..|
T Consensus       402 ~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf  478 (857)
T PLN03077        402 LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFF  478 (857)
T ss_pred             cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHH
Confidence            9999999999999988743 4577888999999999999999999987543   45678999999999999999999999


Q ss_pred             HHHHHh-cCcchH-HH----HHHHh-hHHHHHHHHHHHHhhcCCchhh-HhhchHHHHHHHhHHhhch-----hhhcHHH
Q psy1863         292 ENLLLE-AVRNDA-LS----QLHRE-MKHEAEKCILTSAKLIAPSIED-NFSNGYNWCVQSIRNSAHS-----SLAQDLE  358 (425)
Q Consensus       292 ~~~a~~-~~p~~~-~~----~l~~~-~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~  358 (425)
                      ++ ... ..|+.. +.    ..+.. ..+.+.+.+..+++..-..... ...+...++..+....+..     ......|
T Consensus       479 ~~-m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~  557 (857)
T PLN03077        479 RQ-MLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSW  557 (857)
T ss_pred             HH-HHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhH
Confidence            99 554 345544 22    22222 6677777777666543211110 0011001111111111110     2234567


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcCCCCcHHHHHHhHhH
Q psy1863         359 INKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLT  420 (425)
Q Consensus       359 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~  420 (425)
                      ..+...|.+.|+.++|++.|++..+ ....|+...+...+ ....+....+++..+++.+.+
T Consensus       558 n~lI~~~~~~G~~~~A~~lf~~M~~-~g~~Pd~~T~~~ll-~a~~~~g~v~ea~~~f~~M~~  617 (857)
T PLN03077        558 NILLTGYVAHGKGSMAVELFNRMVE-SGVNPDEVTFISLL-CACSRSGMVTQGLEYFHSMEE  617 (857)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCcccHHHHH-HHHhhcChHHHHHHHHHHHHH
Confidence            7788888888888888888887653 23345555544444 223333456677777777653

>PLN03077 Protein ECB2; Provisional

Probab=99.49  E-value=6.2e-11  Score=123.89  Aligned_cols=241  Identities=10%  Similarity=-0.063  Sum_probs=148.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH--------
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNL--------  206 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--------  206 (425)
                      ..++..+...|.+.|++++|.++|++....+..+|..+...|...|++++|+..|++.....+.+..++..+        
T Consensus       424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g  503 (857)
T PLN03077        424 VVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIG  503 (857)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhc
Confidence            344566778899999999999999998755667899999999999999999999999886543344333333        


Q ss_pred             ---------------------------HHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863         207 ---------------------------GNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHK  259 (425)
Q Consensus       207 ---------------------------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  259 (425)
                                                 ...|.+.|+.++|...|+..    +.+..+|..+...|.+.|+.++|+..|++
T Consensus       504 ~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~  579 (857)
T PLN03077        504 ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNR  579 (857)
T ss_pred             hHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence                                       35556666666666666654    34566677777777777777777777777


Q ss_pred             HHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CcchH-HHHHHHh-----hHHHHHHHHHHHHhhcCCc
Q psy1863         260 LQAIVP-SMPEVLYQIASLYEITGDVEQASDVNENLLLEA---VRNDA-LSQLHRE-----MKHEAEKCILTSAKLIAPS  329 (425)
Q Consensus       260 al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~---~p~~~-~~~l~~~-----~~~~A~~~~~~a~~~~~~~  329 (425)
                      ..+... .+..++..+-..+...|++++|..+|+. ..+.   .|+.. +..+..+     +.++|.+.+++. ...|+ 
T Consensus       580 M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~-M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-  656 (857)
T PLN03077        580 MVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS-MEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-  656 (857)
T ss_pred             HHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHH-HHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-
Confidence            665321 1344555555666677777777777777 5422   34332 3333222     667777766654 22232 


Q ss_pred             hhhHhhchHHHHHH---------HhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy1863         330 IEDNFSNGYNWCVQ---------SIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD  382 (425)
Q Consensus       330 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  382 (425)
                      ...|..+.......         ...-....+.....+..++.+|...|++++|.+..+...
T Consensus       657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~  718 (857)
T PLN03077        657 PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMR  718 (857)
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHH
Confidence            22222111100000         000122333345566667777777777777777776664

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.47  E-value=2.1e-11  Score=122.13  Aligned_cols=229  Identities=13%  Similarity=0.030  Sum_probs=157.9

Q ss_pred             CcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy1863         130 HSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNL  206 (425)
Q Consensus       130 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  206 (425)
                      +++...+.+..+...+...+++++|+..++..+   |....+++.+|.+++..+++.++...  .++.            
T Consensus        26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~------------   91 (906)
T PRK14720         26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID------------   91 (906)
T ss_pred             CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh------------
Confidence            344445555556666666666666666666555   55666666666666666654444333  2222            


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy1863         207 GNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQ  286 (425)
Q Consensus       207 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  286 (425)
                        ......++ .+++++...+...+++..+++.+|.||-++|+.++|...|+++++.+|+++.+..++|..|... +.++
T Consensus        92 --~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~K  167 (906)
T PRK14720         92 --SFSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEK  167 (906)
T ss_pred             --hcccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHH
Confidence              22223333 4455555555556666789999999999999999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHH
Q psy1863         287 ASDVNENLLLEAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFL  366 (425)
Q Consensus       287 A~~~~~~~a~~~~p~~~~~~l~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  366 (425)
                      |..++.+ |+...       +..-++..+..++.+.+..+|.+.+.....     .+.+..+-.......++.-+-.+|.
T Consensus       168 A~~m~~K-AV~~~-------i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i-----~~ki~~~~~~~~~~~~~~~l~~~y~  234 (906)
T PRK14720        168 AITYLKK-AIYRF-------IKKKQYVGIEEIWSKLVHYNSDDFDFFLRI-----ERKVLGHREFTRLVGLLEDLYEPYK  234 (906)
T ss_pred             HHHHHHH-HHHHH-------HhhhcchHHHHHHHHHHhcCcccchHHHHH-----HHHHHhhhccchhHHHHHHHHHHHh
Confidence            9999999 87652       111167778888899998888877653322     1122221112223456667888999


Q ss_pred             hcCCHHHHHHHHHHHHhhccCCc
Q psy1863         367 RMNDVSQAVDVLKSCDEMTSSAA  389 (425)
Q Consensus       367 ~~g~~~~A~~~~~~~~~~~~~~~  389 (425)
                      .+++|++++.+++.+....+.+.
T Consensus       235 ~~~~~~~~i~iLK~iL~~~~~n~  257 (906)
T PRK14720        235 ALEDWDEVIYILKKILEHDNKNN  257 (906)
T ss_pred             hhhhhhHHHHHHHHHHhcCCcch
Confidence            99999999999999977666543

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.46  E-value=4.9e-10  Score=116.65  Aligned_cols=279  Identities=11%  Similarity=-0.036  Sum_probs=205.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcc----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Q psy1863         136 DLEINKAVTFLRMNDVSQAVDVLKSCD----EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADT-YNSAAFVNLGNCA  210 (425)
Q Consensus       136 ~~~~~~a~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~  210 (425)
                      ..+..+-..+...|+++.|..++..+.    ..+..++..+...|.+.|++++|...|++..+... .+..+|..+...|
T Consensus       438 ~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy  517 (1060)
T PLN03218        438 STFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGC  517 (1060)
T ss_pred             HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            344556667888999999999999887    45678889999999999999999999999987653 3788899999999


Q ss_pred             HHhcCHHHHHHHHHHHHhc--CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcCCH
Q psy1863         211 MAREDYVKGKELYVHALDN--DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI----VPSMPEVLYQIASLYEITGDV  284 (425)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~  284 (425)
                      .+.|++++|+..|+.....  .| +..+|..+...|.+.|++++|.+.|.++...    .| +..++..+..+|.+.|++
T Consensus       518 ~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~l  595 (1060)
T PLN03218        518 ARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQV  595 (1060)
T ss_pred             HHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCH
Confidence            9999999999999998765  34 4778999999999999999999999998763    33 567888899999999999


Q ss_pred             HHHHHHHHHHHHhcC--cchH-HHHHHHh-----hHHHHHHHHHHHHhhc--CCchhhHhhchHHHHHHHhHHhhc----
Q psy1863         285 EQASDVNENLLLEAV--RNDA-LSQLHRE-----MKHEAEKCILTSAKLI--APSIEDNFSNGYNWCVQSIRNSAH----  350 (425)
Q Consensus       285 ~~A~~~~~~~a~~~~--p~~~-~~~l~~~-----~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----  350 (425)
                      ++|.+.|+. ..+.+  |+.. |..+...     +.++|...|.+..+..  |+. ..+..+...++..+....+.    
T Consensus       596 deA~elf~~-M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~-~TynsLI~a~~k~G~~eeA~~l~~  673 (1060)
T PLN03218        596 DRAKEVYQM-IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE-VFFSALVDVAGHAGDLDKAFEILQ  673 (1060)
T ss_pred             HHHHHHHHH-HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHH
Confidence            999999999 77764  2322 4444333     8999999999988763  432 22222111111111111111    


Q ss_pred             ------hhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcCCCCcHHHHHHhHhH
Q psy1863         351 ------SSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLT  420 (425)
Q Consensus       351 ------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~  420 (425)
                            .......+..+...|.+.|++++|+++|++..+. ...|+...+... .....+....++|.++++.+..
T Consensus       674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~L-I~gy~k~G~~eeAlelf~eM~~  747 (1060)
T PLN03218        674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNAL-ITALCEGNQLPKALEVLSEMKR  747 (1060)
T ss_pred             HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHHHHH
Confidence                  1123456778999999999999999999988543 234444443333 3445555678899999988764

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.46  E-value=1.3e-10  Score=111.52  Aligned_cols=232  Identities=19%  Similarity=0.176  Sum_probs=148.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM  211 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  211 (425)
                      +++.+-.+.++...|++++|++.+.+..   .+...+.-..|.++..+|++++|...|...++.+|++...+..+..+..
T Consensus         4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g   83 (517)
T PF12569_consen    4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG   83 (517)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence            3444556677777777777777776655   6666777777777777788788877777777777777777666666652


Q ss_pred             Hhc-----CHHHHHHHHHHHHhcCcC------------------------------------------------------
Q psy1863         212 ARE-----DYVKGKELYVHALDNDAT------------------------------------------------------  232 (425)
Q Consensus       212 ~~g-----~~~~A~~~~~~al~~~~~------------------------------------------------------  232 (425)
                      ...     +.+.-..+|++.....|.                                                      
T Consensus        84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~  163 (517)
T PF12569_consen   84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIE  163 (517)
T ss_pred             hhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHH
Confidence            221     223333333333222110                                                      


Q ss_pred             ---------------------------c--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy1863         233 ---------------------------C--IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGD  283 (425)
Q Consensus       233 ---------------------------~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  283 (425)
                                                 .  ..+++.+|..|-..|++++|+++.++++...|..++.+...|.++-..|+
T Consensus       164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~  243 (517)
T PF12569_consen  164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD  243 (517)
T ss_pred             HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence                                       1  23456777777778888888888888888888878888888888888888


Q ss_pred             HHHHHHHHHHHHHhcCcchH-HHHH-HHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcH
Q psy1863         284 VEQASDVNENLLLEAVRNDA-LSQL-HRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQD  356 (425)
Q Consensus       284 ~~~A~~~~~~~a~~~~p~~~-~~~l-~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (425)
                      +.+|...++. +..+++.|- +..- +..     +.++|...+..-.+...+.......                  ..-
T Consensus       244 ~~~Aa~~~~~-Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~------------------mQc  304 (517)
T PF12569_consen  244 LKEAAEAMDE-ARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLND------------------MQC  304 (517)
T ss_pred             HHHHHHHHHH-HHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHH------------------HHH
Confidence            8888888888 877777776 2211 111     6666666554443322211111110                  012


Q ss_pred             HH--HHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy1863         357 LE--INKAVTFLRMNDVSQAVDVLKSCDEMT  385 (425)
Q Consensus       357 ~~--~~la~~~~~~g~~~~A~~~~~~~~~~~  385 (425)
                      +|  ...|.+|.+.|++..|+..|..+.+..
T Consensus       305 ~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f  335 (517)
T PF12569_consen  305 MWFETECAEAYLRQGDYGLALKRFHAVLKHF  335 (517)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            33  347999999999999999988886533

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1127|consensus

Probab=99.46  E-value=7.7e-11  Score=115.30  Aligned_cols=246  Identities=12%  Similarity=0.058  Sum_probs=175.8

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy1863         134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCA  210 (425)
Q Consensus       134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (425)
                      +..-+..+|..|...+++..|+..|+.++   |.+..+|..+|.+|...|.+..|++.|.++..++|.+....+..+...
T Consensus       561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~e  640 (1238)
T KOG1127|consen  561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVME  640 (1238)
T ss_pred             HHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHH
Confidence            34445568888899999999999999988   888899999999999999999999999999999998877777777777


Q ss_pred             HHhcCHHHHHHHHHHHHhcC------------------------------------------------------------
Q psy1863         211 MAREDYVKGKELYVHALDND------------------------------------------------------------  230 (425)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~------------------------------------------------------------  230 (425)
                      ...|+|.+|+..+...+...                                                            
T Consensus       641 cd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as  720 (1238)
T KOG1127|consen  641 CDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS  720 (1238)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh
Confidence            77777777766665554321                                                            


Q ss_pred             --------------------------------cC-------------------cHHHHHHHHHHHHH--------cCCHH
Q psy1863         231 --------------------------------AT-------------------CIEALYNLGLAHKH--------LNEYS  251 (425)
Q Consensus       231 --------------------------------~~-------------------~~~~~~~la~~~~~--------~g~~~  251 (425)
                                                      |+                   ++..|+++|.-|.+        +.+..
T Consensus       721 dac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~  800 (1238)
T KOG1127|consen  721 DACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDAC  800 (1238)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHH
Confidence                                            00                   12346667766655        22334


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHh
Q psy1863         252 DSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAK  324 (425)
Q Consensus       252 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~  324 (425)
                      .|+.++.+++++..++...|..||.+ ...|++.-|..+|-+ .....|...  |.++|.+     +.+.|...+.++..
T Consensus       801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIk-s~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS  878 (1238)
T KOG1127|consen  801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIK-SRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS  878 (1238)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhh-hhhccccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence            67888888888887788888888877 555788888888888 877788777  8888777     88888888888888


Q ss_pred             hcCCchhhHhhchHHHHHHH-----hHHhhch---------hhhcHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy1863         325 LIAPSIEDNFSNGYNWCVQS-----IRNSAHS---------SLAQDLEINKAVTFLRMNDVSQAVDVLKSC  381 (425)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  381 (425)
                      ++|.+...|....+..-..+     ..-.++.         ......|.+-......+|++++-+..-+++
T Consensus       879 LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki  949 (1238)
T KOG1127|consen  879 LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI  949 (1238)
T ss_pred             cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence            88888877766543221111     1111110         112244566667777888888877766665

>KOG1156|consensus

Probab=99.44  E-value=1.4e-11  Score=115.53  Aligned_cols=235  Identities=13%  Similarity=0.094  Sum_probs=185.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q psy1863         166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHK  245 (425)
Q Consensus       166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  245 (425)
                      ..+++..+.-.+..++|...++..+..++..|.+++++...|..+..+|+-++|..+.+.++..++.+...|.-+|.++.
T Consensus         7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R   86 (700)
T KOG1156|consen    7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR   86 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence            34556666666778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHH
Q psy1863         246 HLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKC  318 (425)
Q Consensus       246 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~  318 (425)
                      ...+|++|+.+|..|+.+.|++..++..++.+..++++++.....-.+ .++..|+..  |..++..     ++..|...
T Consensus        87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~-LLql~~~~ra~w~~~Avs~~L~g~y~~A~~i  165 (700)
T KOG1156|consen   87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQ-LLQLRPSQRASWIGFAVAQHLLGEYKMALEI  165 (700)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999 999999888  6666655     77777776


Q ss_pred             HHHHHhhcC---CchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHH
Q psy1863         319 ILTSAKLIA---PSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFI  395 (425)
Q Consensus       319 ~~~a~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~  395 (425)
                      .+...+...   +.....+                    ..+.+....+..+.|.+++|++.+...++   ...+++.+.
T Consensus       166 l~ef~~t~~~~~s~~~~e~--------------------se~~Ly~n~i~~E~g~~q~ale~L~~~e~---~i~Dkla~~  222 (700)
T KOG1156|consen  166 LEEFEKTQNTSPSKEDYEH--------------------SELLLYQNQILIEAGSLQKALEHLLDNEK---QIVDKLAFE  222 (700)
T ss_pred             HHHHHHhhccCCCHHHHHH--------------------HHHHHHHHHHHHHcccHHHHHHHHHhhhh---HHHHHHHHh
Confidence            666655442   2111111                    23334456677888999999998887742   223333322


Q ss_pred             HHHhhhccCcCCCCcHHHHHHhHhHHhhc
Q psy1863         396 YFLVSSEFQYLPTSEVPIYLENLLTVLQY  424 (425)
Q Consensus       396 ~~l~~~~~~~~~~~ea~~~~~~~l~~~~~  424 (425)
                      .--..-.+...+..+|...+..++..+|.
T Consensus       223 e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd  251 (700)
T KOG1156|consen  223 ETKADLLMKLGQLEEAVKVYRRLLERNPD  251 (700)
T ss_pred             hhHHHHHHHHhhHHhHHHHHHHHHhhCch
Confidence            22211222233667888888888777665

>KOG1130|consensus

Probab=99.42  E-value=3.4e-12  Score=113.37  Aligned_cols=268  Identities=19%  Similarity=0.180  Sum_probs=184.7

Q ss_pred             HHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHH
Q psy1863          12 EQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREM   91 (425)
Q Consensus        12 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~   91 (425)
                      +..+-+|...+-.+...|++...+..|+.|+.           .+..+...+...|.++|.-+       --|..|.   
T Consensus        14 ~~SCleLalEGERLck~gdcraGv~ff~aA~q-----------vGTeDl~tLSAIYsQLGNAy-------fyL~DY~---   72 (639)
T KOG1130|consen   14 DRSCLELALEGERLCKMGDCRAGVDFFKAALQ-----------VGTEDLSTLSAIYSQLGNAY-------FYLKDYE---   72 (639)
T ss_pred             hhHHHHHHHHHHHHHhccchhhhHHHHHHHHH-----------hcchHHHHHHHHHHHhcchh-------hhHhhHH---
Confidence            34567788899999999999999999999874           45667777788888888643       0111121   


Q ss_pred             HHHHHHH---HHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc------
Q psy1863          92 KHEAEKC---ILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD------  162 (425)
Q Consensus        92 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~------  162 (425)
                        .+.++   -++.++++...+.                      .+...-++|+.+-..|.|++|+.+..+-+      
T Consensus        73 --kAl~yH~hDltlar~lgdklG----------------------EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL  128 (639)
T KOG1130|consen   73 --KALKYHTHDLTLARLLGDKLG----------------------EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL  128 (639)
T ss_pred             --HHHhhhhhhHHHHHHhcchhc----------------------cccccccccchhhhhcccchHHHHHHHHhHHHHHH
Confidence              22211   1122233211110                      11122477889999999999998877766      


Q ss_pred             ---cchHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHh
Q psy1863         163 ---EMTSSAATNLSFIYFLQGE--------------------VEQAEKMAEEACTADTY------NSAAFVNLGNCAMAR  213 (425)
Q Consensus       163 ---~~~~~~~~~lg~~~~~~g~--------------------~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~  213 (425)
                         .....+++++|.+|...|+                    ++.|.++|..-+++...      ...++-+||+.|+-+
T Consensus       129 gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlL  208 (639)
T KOG1130|consen  129 GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLL  208 (639)
T ss_pred             hHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeee
Confidence               3456889999999988764                    34555666655554322      234578899999999


Q ss_pred             cCHHHHHHHHHHHHhcCcCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----C--CHHHHHHHHHHHHHc
Q psy1863         214 EDYVKGKELYVHALDNDATC------IEALYNLGLAHKHLNEYSDSLECFHKLQAIVP----S--MPEVLYQIASLYEIT  281 (425)
Q Consensus       214 g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~--~~~~~~~la~~~~~~  281 (425)
                      |+|+.|+...+.-+.+....      -.++.++|.++.-+|+++.|+++|+..+.+..    .  .....+.||..|...
T Consensus       209 Gdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll  288 (639)
T KOG1130|consen  209 GDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLL  288 (639)
T ss_pred             ccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHH
Confidence            99999999988887764322      45788999999999999999999998775532    2  345678899999999


Q ss_pred             CCHHHHHHHHHHHHHhcCcc--hH------HHHHHHh-----hHHHHHHHHHHHHhh
Q psy1863         282 GDVEQASDVNENLLLEAVRN--DA------LSQLHRE-----MKHEAEKCILTSAKL  325 (425)
Q Consensus       282 g~~~~A~~~~~~~a~~~~p~--~~------~~~l~~~-----~~~~A~~~~~~a~~~  325 (425)
                      .++++|+.++.+ -+.+..+  +.      ...||..     ..++|+.+.+..++.
T Consensus       289 ~e~~kAI~Yh~r-HLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  289 KEVQKAITYHQR-HLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            999999999888 6655322  11      3444444     677777777766655

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.42  E-value=4.9e-11  Score=119.48  Aligned_cols=234  Identities=8%  Similarity=-0.042  Sum_probs=131.4

Q ss_pred             hhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863         112 DNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEE  191 (425)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  191 (425)
                      +++..+...|.+.+..   .+-....++.+|.++++.+++..+...             .++.......++ .+++++-.
T Consensus        45 ~~~deai~i~~~~l~~---~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~~~-~~ve~~~~  107 (906)
T PRK14720         45 NLTDEAKDICEEHLKE---HKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNLKW-AIVEHICD  107 (906)
T ss_pred             CCHHHHHHHHHHHHHh---CCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccccch-hHHHHHHH
Confidence            3445555555544443   333556778889999999997776644             333333333444 44444444


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy1863         192 ACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVL  271 (425)
Q Consensus       192 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  271 (425)
                      .+-..+.+..+++.+|.||-++|++++|...|+++++.+|+++.+++++|..|... ++++|+.++.+++..        
T Consensus       108 ~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------  178 (906)
T PRK14720        108 KILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--------  178 (906)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------
Confidence            44455556666666666666666666666666666666666666666666666666 666666666666554        


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--H--------HHHH----------------Hh-hHHHHHHHHHHHHh
Q psy1863         272 YQIASLYEITGDVEQASDVNENLLLEAVRNDA--L--------SQLH----------------RE-MKHEAEKCILTSAK  324 (425)
Q Consensus       272 ~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~--------~~l~----------------~~-~~~~A~~~~~~a~~  324 (425)
                            +...+++.++.+++.+ .+..+|++.  +        ..++                .. ++++++.+++.+++
T Consensus       179 ------~i~~kq~~~~~e~W~k-~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~  251 (906)
T PRK14720        179 ------FIKKKQYVGIEEIWSK-LVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE  251 (906)
T ss_pred             ------HHhhhcchHHHHHHHH-HHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Confidence                  3444455555555555 555555533  0        0001                01 66678888888888


Q ss_pred             hcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy1863         325 LIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDE  383 (425)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  383 (425)
                      .+|.+......+.  .|..+.+. ....  .+-.+.++.+--.-.++..++..|++...
T Consensus       252 ~~~~n~~a~~~l~--~~y~~kY~-~~~~--~ee~l~~s~l~~~~~~~~~~i~~fek~i~  305 (906)
T PRK14720        252 HDNKNNKAREELI--RFYKEKYK-DHSL--LEDYLKMSDIGNNRKPVKDCIADFEKNIV  305 (906)
T ss_pred             cCCcchhhHHHHH--HHHHHHcc-Ccch--HHHHHHHhccccCCccHHHHHHHHHHHee
Confidence            8887766544442  22221111 0111  11222333333333567888888877753

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.42  E-value=1e-11  Score=123.35  Aligned_cols=138  Identities=6%  Similarity=-0.064  Sum_probs=131.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM  211 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  211 (425)
                      .+.++.+|.+....|.+++|...++.++   |++..++..++.++.+.+++++|+..+++++..+|+++.+++.+|.++.
T Consensus        86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~  165 (694)
T PRK15179         86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD  165 (694)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            6778999999999999999999999999   9999999999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy1863         212 AREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLY  272 (425)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  272 (425)
                      ..|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|++++.....-...+.
T Consensus       166 ~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~  226 (694)
T PRK15179        166 EIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT  226 (694)
T ss_pred             HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence            9999999999999999999999999999999999999999999999999998765555443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.41  E-value=8.7e-12  Score=115.74  Aligned_cols=113  Identities=15%  Similarity=0.170  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC
Q psy1863         169 ATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLN  248 (425)
Q Consensus       169 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  248 (425)
                      +...|...+..|++++|+.+|.+++..+|+++.+++++|.++...|++++|+..+++++.++|+++.+++++|.++..+|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            45668888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy1863         249 EYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT  281 (425)
Q Consensus       249 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  281 (425)
                      ++++|+..|++++.++|+++.+...++.|...+
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999888888886655

>KOG1128|consensus

Probab=99.36  E-value=1.4e-10  Score=110.26  Aligned_cols=212  Identities=14%  Similarity=0.116  Sum_probs=175.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q psy1863         136 DLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARED  215 (425)
Q Consensus       136 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  215 (425)
                      .+...+|..++..|-...|+.+|++.     ..|-....||...|+..+|.....+-++ .|+++..|..+|.+.....-
T Consensus       399 q~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~  472 (777)
T KOG1128|consen  399 QLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSL  472 (777)
T ss_pred             hHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHH
Confidence            34567899999999999999999886     7888899999999999999999999888 77788888888887776666


Q ss_pred             HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863         216 YVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLL  295 (425)
Q Consensus       216 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a  295 (425)
                      |++|.++.+..      +..+...+|......++|+++..+++..++++|-....|+.+|.+..+.++++.|..+|.. +
T Consensus       473 yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~r-c  545 (777)
T KOG1128|consen  473 YEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHR-C  545 (777)
T ss_pred             HHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHH-H
Confidence            66666555443      3457777888888899999999999999999999999999999999999999999999999 9


Q ss_pred             HhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhc
Q psy1863         296 LEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRM  368 (425)
Q Consensus       296 ~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  368 (425)
                      +.++|++.  |.+++..     +..+|...+.++++-+-.+..                         +|.|--.+-...
T Consensus       546 vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~-------------------------iWENymlvsvdv  600 (777)
T KOG1128|consen  546 VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQ-------------------------IWENYMLVSVDV  600 (777)
T ss_pred             hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCe-------------------------eeechhhhhhhc
Confidence            99999998  8888877     777888888888887644433                         333444566788


Q ss_pred             CCHHHHHHHHHHHHhhc
Q psy1863         369 NDVSQAVDVLKSCDEMT  385 (425)
Q Consensus       369 g~~~~A~~~~~~~~~~~  385 (425)
                      |.+++|++.+.+...+.
T Consensus       601 ge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  601 GEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             ccHHHHHHHHHHHHHhh
Confidence            99999999999986433

>KOG3785|consensus

Probab=99.36  E-value=8e-11  Score=102.91  Aligned_cols=236  Identities=17%  Similarity=0.183  Sum_probs=134.3

Q ss_pred             HcCCHHHHHHHHHhcc----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q psy1863         147 RMNDVSQAVDVLKSCD----EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKEL  222 (425)
Q Consensus       147 ~~g~~~~A~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  222 (425)
                      ...+|..|+.+++-..    ......-..+|.|++..|+|++|...|.-+...+..+...+.+++.|++-+|.|.+|...
T Consensus        34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~  113 (557)
T KOG3785|consen   34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSI  113 (557)
T ss_pred             hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHH
Confidence            3344444444444333    112233344455555555555555555554444444444455555555555555555444


Q ss_pred             HHHHHhc--------------C------------cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy1863         223 YVHALDN--------------D------------ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIAS  276 (425)
Q Consensus       223 ~~~al~~--------------~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  276 (425)
                      ..++-+.              +            .+..+-...++.+++..-.|++|++.|.+.+.-+|+....-..++.
T Consensus       114 ~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~AL  193 (557)
T KOG3785|consen  114 AEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMAL  193 (557)
T ss_pred             HhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHH
Confidence            3332111              0            0112334556777777778999999999999999988888889999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcCcchH-HHHHHHh------hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHH------
Q psy1863         277 LYEITGDVEQASDVNENLLLEAVRNDA-LSQLHRE------MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQ------  343 (425)
Q Consensus       277 ~~~~~g~~~~A~~~~~~~a~~~~p~~~-~~~l~~~------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~------  343 (425)
                      ||.++.-++-+.+.+.- .+...|+++ -.+|-.+      +-..|..-.+...+-.....    ..+-..|..      
T Consensus       194 CyyKlDYydvsqevl~v-YL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~----~f~~~l~rHNLVvFr  268 (557)
T KOG3785|consen  194 CYYKLDYYDVSQEVLKV-YLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY----PFIEYLCRHNLVVFR  268 (557)
T ss_pred             HHHhcchhhhHHHHHHH-HHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc----hhHHHHHHcCeEEEe
Confidence            99999999999988888 888899988 3333332      22333333333332222111    111011100      


Q ss_pred             ----HhHH-hhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcc
Q psy1863         344 ----SIRN-SAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT  390 (425)
Q Consensus       344 ----~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~  390 (425)
                          ++.- -..-...+++.++++..|+++|+.++|+...+.+   .|..|.
T Consensus       269 ngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl---~PttP~  317 (557)
T KOG3785|consen  269 NGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL---DPTTPY  317 (557)
T ss_pred             CCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc---CCCChH
Confidence                0000 0111124678889999999999999999999988   555453

>KOG1130|consensus

Probab=99.36  E-value=5.5e-12  Score=112.08  Aligned_cols=251  Identities=12%  Similarity=0.083  Sum_probs=176.3

Q ss_pred             hhhhhhHHHHHHHHHhc-CCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCC
Q psy1863         112 DNFSNGYNWCVQSIRNS-AHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGE  181 (425)
Q Consensus       112 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~  181 (425)
                      ++...|..++...+..- ..-..-+.+|-.+|+.|+..++|++|+++-.--+         ...+.+.-+||..+-..|.
T Consensus        31 gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~  110 (639)
T KOG1130|consen   31 GDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGA  110 (639)
T ss_pred             cchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcc
Confidence            34555666565555431 1222346678899999999999999998744332         3445667799999999999


Q ss_pred             HHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHhcC--------------------HHHHHHHHHHHHhcCcC---
Q psy1863         182 VEQAEKMAEEACTADT------YNSAAFVNLGNCAMARED--------------------YVKGKELYVHALDNDAT---  232 (425)
Q Consensus       182 ~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~~~---  232 (425)
                      |++|+.+..+-+.+..      ....+++++|++|...|+                    ++.|.++|..-+++...   
T Consensus       111 fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgD  190 (639)
T KOG1130|consen  111 FDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGD  190 (639)
T ss_pred             cchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999888776642      235689999999998764                    34455555555544221   


Q ss_pred             ---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----C
Q psy1863         233 ---CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM------PEVLYQIASLYEITGDVEQASDVNENLLLEA----V  299 (425)
Q Consensus       233 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~----~  299 (425)
                         ...++-+||..|+-+|+|+.|+..-+.-+.+....      -.++.++|.++.-+|+++.|+++|+. .+.+    .
T Consensus       191 r~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~-tl~LAielg  269 (639)
T KOG1130|consen  191 RLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKL-TLNLAIELG  269 (639)
T ss_pred             HHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHH-HHHHHHHhc
Confidence               24577899999999999999999988777765432      35889999999999999999999998 6544    2


Q ss_pred             cchH----HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCC
Q psy1863         300 RNDA----LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMND  370 (425)
Q Consensus       300 p~~~----~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  370 (425)
                      ....    -+.||..     ++++|+.++.+-+.+....-+ ...                  .......+|..|...|.
T Consensus       270 ~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~D-riG------------------e~RacwSLgna~~alg~  330 (639)
T KOG1130|consen  270 NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELED-RIG------------------ELRACWSLGNAFNALGE  330 (639)
T ss_pred             chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhh------------------hHHHHHHHHHHHHhhhh
Confidence            2211    3444544     788888888877665322111 000                  12456678899999999


Q ss_pred             HHHHHHHHHHHH
Q psy1863         371 VSQAVDVLKSCD  382 (425)
Q Consensus       371 ~~~A~~~~~~~~  382 (425)
                      .++|+...+...
T Consensus       331 h~kAl~fae~hl  342 (639)
T KOG1130|consen  331 HRKALYFAELHL  342 (639)
T ss_pred             HHHHHHHHHHHH
Confidence            999998877764

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.35  E-value=1.6e-10  Score=105.47  Aligned_cols=156  Identities=14%  Similarity=0.083  Sum_probs=141.1

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL  242 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  242 (425)
                      +....+++..+..++..|++++|...+...+...|+|+..+...+.+++..++..+|.+.+++++.++|+.+..+.++|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHH
Q psy1863         243 AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEKCILTS  322 (425)
Q Consensus       243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~~~~l~~~~~~~A~~~~~~a  322 (425)
                      ++.+.|++.+|+..++..+..+|+++..|..|+..|..+|+..+|...+.+ ......          ++++|+..+..+
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE-~~~~~G----------~~~~A~~~l~~A  451 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE-GYALAG----------RLEQAIIFLMRA  451 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH-HHHhCC----------CHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999888877 443322          677777777777


Q ss_pred             HhhcCCc
Q psy1863         323 AKLIAPS  329 (425)
Q Consensus       323 ~~~~~~~  329 (425)
                      .+....+
T Consensus       452 ~~~~~~~  458 (484)
T COG4783         452 SQQVKLG  458 (484)
T ss_pred             HHhccCC
Confidence            7766433

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.35  E-value=2.2e-10  Score=97.85  Aligned_cols=155  Identities=18%  Similarity=0.176  Sum_probs=124.3

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHhcc------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHH
Q psy1863         134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS---AAFV  204 (425)
Q Consensus       134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~  204 (425)
                      ..+..+..|..++..|++.+|+..|++++      +..+.+.+.+|.+++..|++++|+..+++.++..|+++   .+++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            34556888999999999999999999998      56678999999999999999999999999999998875   5788


Q ss_pred             HHHHHHHHhc-----------CHHHHHHHHHHHHhcCcCcHH-----------------HHHHHHHHHHHcCCHHHHHHH
Q psy1863         205 NLGNCAMARE-----------DYVKGKELYVHALDNDATCIE-----------------ALYNLGLAHKHLNEYSDSLEC  256 (425)
Q Consensus       205 ~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~-----------------~~~~la~~~~~~g~~~~A~~~  256 (425)
                      .+|.+++.+.           ...+|+..|+..+...|++..                 --..+|..|.+.|.+..|+..
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r  163 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR  163 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            8888876653           345899999999999998722                 124678889999999999999


Q ss_pred             HHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHH
Q psy1863         257 FHKLQAIVPSMP---EVLYQIASLYEITGDVEQAS  288 (425)
Q Consensus       257 ~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~  288 (425)
                      ++.+++..|+.+   .++..++.+|..+|..+.|.
T Consensus       164 ~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  164 FQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            999999999865   57888999999999988553

>KOG1127|consensus

Probab=99.33  E-value=1.3e-10  Score=113.65  Aligned_cols=181  Identities=13%  Similarity=0.034  Sum_probs=157.5

Q ss_pred             CCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q psy1863         149 NDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVH  225 (425)
Q Consensus       149 g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  225 (425)
                      .+...|...|-+++   +..+.++..||.+|....|...|..+|.+|.+++|.+..++-..+.+|.+..+++.|....-.
T Consensus       472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~  551 (1238)
T KOG1127|consen  472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR  551 (1238)
T ss_pred             hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence            44777888888777   788899999999999999999999999999999999999999999999999999999999777


Q ss_pred             HHhcCcCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         226 ALDNDATC--IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       226 al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      +-+..|-.  ...|..+|..|...++..+|+..|+.+++.+|.+...|..+|.+|...|.+..|+..|.+ +..++|.+.
T Consensus       552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~k-As~LrP~s~  630 (1238)
T KOG1127|consen  552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTK-ASLLRPLSK  630 (1238)
T ss_pred             HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhh-hHhcCcHhH
Confidence            76666643  456778999999999999999999999999999999999999999999999999999999 999999988


Q ss_pred             --HHHHHHh-----hHHHHHHHHHHHHhhcCCch
Q psy1863         304 --LSQLHRE-----MKHEAEKCILTSAKLIAPSI  330 (425)
Q Consensus       304 --~~~l~~~-----~~~~A~~~~~~a~~~~~~~~  330 (425)
                        .+..+.+     .+.+|+..+...+.......
T Consensus       631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~  664 (1238)
T KOG1127|consen  631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLER  664 (1238)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence              2222222     88888888888877654443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.31  E-value=5.5e-11  Score=110.41  Aligned_cols=107  Identities=15%  Similarity=0.198  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy1863         203 FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG  282 (425)
Q Consensus       203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  282 (425)
                      +...|...+..|+|++|+.+|++++..+|+++.++.++|.++..+|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            45678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCcchH--HHHHHHh
Q psy1863         283 DVEQASDVNENLLLEAVRNDA--LSQLHRE  310 (425)
Q Consensus       283 ~~~~A~~~~~~~a~~~~p~~~--~~~l~~~  310 (425)
                      ++++|+..|++ ++.++|+++  ...++.+
T Consensus        85 ~~~eA~~~~~~-al~l~P~~~~~~~~l~~~  113 (356)
T PLN03088         85 EYQTAKAALEK-GASLAPGDSRFTKLIKEC  113 (356)
T ss_pred             CHHHHHHHHHH-HHHhCCCCHHHHHHHHHH
Confidence            99999999999 999999999  4444444

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.31  E-value=8.9e-11  Score=91.38  Aligned_cols=105  Identities=13%  Similarity=0.209  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---HHHHHH
Q psy1863         166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN---SAAFVNLGNCAMAREDYVKGKELYVHALDNDATC---IEALYN  239 (425)
Q Consensus       166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~  239 (425)
                      +.+++.+|..+...|++++|+..|.+++..+|++   +.+++.+|.++...|++++|+.+|++++..+|++   +.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            3456677777777777777777777777766655   4566777777777777777777777777766653   556777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy1863         240 LGLAHKHLNEYSDSLECFHKLQAIVPSMPEV  270 (425)
Q Consensus       240 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  270 (425)
                      +|.++...|++++|+..+++++...|++..+
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  112 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA  112 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence            7777777777777777777777777766544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.31  E-value=5.2e-10  Score=102.25  Aligned_cols=156  Identities=15%  Similarity=0.060  Sum_probs=139.3

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy1863         134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCA  210 (425)
Q Consensus       134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (425)
                      ....++..+..++..|++++|...+...+   |+++..+...+.++...++.++|.+.+++++..+|+.+..+.++|.++
T Consensus       305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~al  384 (484)
T COG4783         305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQAL  384 (484)
T ss_pred             chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence            34456888999999999999999999987   999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy1863         211 MAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDV  290 (425)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  290 (425)
                      +..|++.+|+..+...+..+|+++..|..||..|..+|+..+|...+                 +..+...|++++|+..
T Consensus       385 l~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~  447 (484)
T COG4783         385 LKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIF  447 (484)
T ss_pred             HhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHH
Confidence            99999999999999999999999999999999999999877666554                 5566777999999999


Q ss_pred             HHHHHHhcC-cchH-HHHH
Q psy1863         291 NENLLLEAV-RNDA-LSQL  307 (425)
Q Consensus       291 ~~~~a~~~~-p~~~-~~~l  307 (425)
                      +.. +.+.. .+.+ |...
T Consensus       448 l~~-A~~~~~~~~~~~aR~  465 (484)
T COG4783         448 LMR-ASQQVKLGFPDWARA  465 (484)
T ss_pred             HHH-HHHhccCCcHHHHHH
Confidence            999 87765 5555 4443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.28  E-value=9.1e-10  Score=96.32  Aligned_cols=160  Identities=13%  Similarity=0.091  Sum_probs=133.7

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHH
Q psy1863         134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTS---SAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS---AAFV  204 (425)
Q Consensus       134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~  204 (425)
                      ..+..+..|..++..|++++|+..|++++   |..+   .+.+.+|.+++..+++++|+..+++.++.+|+++   .+++
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            45556788999999999999999999998   4444   4558999999999999999999999999998775   5688


Q ss_pred             HHHHHHHHhc------------------CHHHHHHHHHHHHhcCcCcHH---H--------------HHHHHHHHHHcCC
Q psy1863         205 NLGNCAMARE------------------DYVKGKELYVHALDNDATCIE---A--------------LYNLGLAHKHLNE  249 (425)
Q Consensus       205 ~la~~~~~~g------------------~~~~A~~~~~~al~~~~~~~~---~--------------~~~la~~~~~~g~  249 (425)
                      .+|.++...+                  ...+|+..|++.++..|++..   +              -...|..|.+.|.
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~  190 (243)
T PRK10866        111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGA  190 (243)
T ss_pred             HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            8888865443                  135788999999999998722   1              1357888999999


Q ss_pred             HHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863         250 YSDSLECFHKLQAIVPSM---PEVLYQIASLYEITGDVEQASDVNEN  293 (425)
Q Consensus       250 ~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~  293 (425)
                      |..|+.-++.+++..|+.   .++++.++..|..+|..++|......
T Consensus       191 y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~  237 (243)
T PRK10866        191 YVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI  237 (243)
T ss_pred             hHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            999999999999998865   46889999999999999999887665

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.28  E-value=6.9e-11  Score=105.88  Aligned_cols=168  Identities=16%  Similarity=0.151  Sum_probs=140.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc--
Q psy1863         137 LEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE--  214 (425)
Q Consensus       137 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--  214 (425)
                      +.+..|.++...|++++|++++.+.  .+.++......+++..++++.|.+.++.+-+.+.+..-+....+.+.+..|  
T Consensus       104 ~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e  181 (290)
T PF04733_consen  104 VQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGE  181 (290)
T ss_dssp             HHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCch
Confidence            4466788888999999999888776  667777788899999999999999999999888887766666666776666  


Q ss_pred             CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHH
Q psy1863         215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDV-EQASDVNEN  293 (425)
Q Consensus       215 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~  293 (425)
                      ++.+|...|+......|.++..++.++.++..+|++++|...+.+++..+|.+++++.+++.+...+|+. +.+.+++.+
T Consensus       182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q  261 (290)
T PF04733_consen  182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ  261 (290)
T ss_dssp             CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence            5999999999988888888999999999999999999999999999999999999999999999999998 667778888


Q ss_pred             HHHhcCcchH-HHHH
Q psy1863         294 LLLEAVRNDA-LSQL  307 (425)
Q Consensus       294 ~a~~~~p~~~-~~~l  307 (425)
                       ....+|+++ ...+
T Consensus       262 -L~~~~p~h~~~~~~  275 (290)
T PF04733_consen  262 -LKQSNPNHPLVKDL  275 (290)
T ss_dssp             -CHHHTTTSHHHHHH
T ss_pred             -HHHhCCCChHHHHH
Confidence             888899998 4444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.26  E-value=1.7e-10  Score=89.82  Aligned_cols=103  Identities=18%  Similarity=0.280  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHH
Q psy1863         200 SAAFVNLGNCAMAREDYVKGKELYVHALDNDATC---IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM---PEVLYQ  273 (425)
Q Consensus       200 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~  273 (425)
                      +.+++.+|..+...|++++|+..|.+++..+|++   +.+++.+|.++...|+++.|+..|++++...|++   +.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4578899999999999999999999999998876   6789999999999999999999999999998875   678999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         274 IASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       274 la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      +|.++...|++++|..++.+ ++...|+++
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~-~~~~~p~~~  110 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQ-VIKRYPGSS  110 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHH-HHHHCcCCh
Confidence            99999999999999999999 999999887

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG2376|consensus

Probab=99.26  E-value=3.2e-08  Score=92.39  Aligned_cols=130  Identities=14%  Similarity=0.129  Sum_probs=102.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----------------------
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD----------------------  196 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------------------  196 (425)
                      +..|.+.++.++.++|+.+++.+-+.........|.+++++|+|++|...|+..++.+                      
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~  162 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ  162 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence            6889999999999999999995446666788889999999999999999999886553                      


Q ss_pred             --------CC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------cCc--------HHHHHHHHHHHHHcCCHHH
Q psy1863         197 --------TY-NSAAFVNLGNCAMAREDYVKGKELYVHALDND-------ATC--------IEALYNLGLAHKHLNEYSD  252 (425)
Q Consensus       197 --------p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------~~~--------~~~~~~la~~~~~~g~~~~  252 (425)
                              |. +.+.++|.+.++...|+|.+|++.+++++.+.       ..+        ..+...++.++..+|+.++
T Consensus       163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e  242 (652)
T KOG2376|consen  163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE  242 (652)
T ss_pred             HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence                    21 34557888888888888888888888885441       111        2356678888888888888


Q ss_pred             HHHHHHHHHhhCCCCH
Q psy1863         253 SLECFHKLQAIVPSMP  268 (425)
Q Consensus       253 A~~~~~~al~~~p~~~  268 (425)
                      |...|...++.+|.+.
T Consensus       243 a~~iy~~~i~~~~~D~  258 (652)
T KOG2376|consen  243 ASSIYVDIIKRNPADE  258 (652)
T ss_pred             HHHHHHHHHHhcCCCc
Confidence            8888888888887554

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.26  E-value=4.4e-08  Score=87.53  Aligned_cols=128  Identities=20%  Similarity=0.120  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Q psy1863         136 DLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTY-NSAAFVNLGNCAM  211 (425)
Q Consensus       136 ~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~  211 (425)
                      ......|..-+..|+|.+|.+...+.-   +....++..-+......||++.|-.++.++-+..++ +..+....+.+..
T Consensus        85 ~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll  164 (400)
T COG3071          85 RKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL  164 (400)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence            344667888888999999999988876   344445555667788899999999999999988443 4567888889999


Q ss_pred             HhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy1863         212 AREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI  263 (425)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  263 (425)
                      ..|+++.|..-..+++...|.++.+......+|.+.|++........+.-+.
T Consensus       165 ~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka  216 (400)
T COG3071         165 NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKA  216 (400)
T ss_pred             hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999888877766544

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.25  E-value=1.6e-10  Score=85.52  Aligned_cols=98  Identities=33%  Similarity=0.464  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHc
Q psy1863         168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHL  247 (425)
Q Consensus       168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  247 (425)
                      +++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.++++++...|.+..++..+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            34555666666666666666666666666666556666666666666666666666666666665555666666666666


Q ss_pred             CCHHHHHHHHHHHHhhCC
Q psy1863         248 NEYSDSLECFHKLQAIVP  265 (425)
Q Consensus       248 g~~~~A~~~~~~al~~~p  265 (425)
                      |++++|...+.+++...|
T Consensus        82 ~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          82 GKYEEALEAYEKALELDP   99 (100)
T ss_pred             HhHHHHHHHHHHHHccCC
Confidence            666666666666555544

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.25  E-value=6.1e-10  Score=90.98  Aligned_cols=179  Identities=12%  Similarity=0.078  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy1863         203 FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG  282 (425)
Q Consensus       203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  282 (425)
                      ++..|..|-..|-+.-|.-.|.+++.+.|..+.+++.+|..+...|+|+.|.+.|+..++++|....+..+.|..++--|
T Consensus        68 ~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~g  147 (297)
T COG4785          68 LFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG  147 (297)
T ss_pred             HHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecC
Confidence            34445555555555555555666666666666666666666666666666666666666666665556666665555556


Q ss_pred             CHHHHHHHHHHHHHhcCcchH----HHHHHHh--hHHHHHHHHHHHHhhcCCchhhHhhchHH-------HHHHHhHHh-
Q psy1863         283 DVEQASDVNENLLLEAVRNDA----LSQLHRE--MKHEAEKCILTSAKLIAPSIEDNFSNGYN-------WCVQSIRNS-  348 (425)
Q Consensus       283 ~~~~A~~~~~~~a~~~~p~~~----~~~l~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~~~~~-  348 (425)
                      +++-|.+.+.+ -.+.+|++|    |..+...  ++.+|...+.+-.+........+...++.       .+.+..... 
T Consensus       148 R~~LAq~d~~~-fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a  226 (297)
T COG4785         148 RYKLAQDDLLA-FYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADA  226 (297)
T ss_pred             chHhhHHHHHH-HHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhc
Confidence            66666655555 555566655    3333333  55555544433333222222222211110       001111111 


Q ss_pred             ----hchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy1863         349 ----AHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD  382 (425)
Q Consensus       349 ----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  382 (425)
                          .....-.+.++.+|..|...|+.++|...|+-+.
T Consensus       227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLai  264 (297)
T COG4785         227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAV  264 (297)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence                1111234677889999999999999999999884

>KOG1128|consensus

Probab=99.25  E-value=1.5e-10  Score=110.22  Aligned_cols=183  Identities=13%  Similarity=0.103  Sum_probs=138.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy1863         137 LEINKAVTFLRMNDVSQAVDVLKSCD--EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE  214 (425)
Q Consensus       137 ~~~~~a~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  214 (425)
                      ++-....+|...|+..+|..+..+-+  +..+..|..+|.+.....-|++|.++.+..      +..+...+|......+
T Consensus       426 mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~  499 (777)
T KOG1128|consen  426 MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNK  499 (777)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccch
Confidence            34456678888888888888877766  677777777777766665556665555443      3446666677777778


Q ss_pred             CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863         215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENL  294 (425)
Q Consensus       215 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  294 (425)
                      +|.++..+++..++++|-...+|+++|.+..+.++++.|..+|...+.+.|++..+|++++..|...|+..+|...+.+ 
T Consensus       500 ~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~E-  578 (777)
T KOG1128|consen  500 DFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKE-  578 (777)
T ss_pred             hHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHH-
Confidence            8888888888888888888888888888888888888888888888888888888888888888888888888888888 


Q ss_pred             HHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhc
Q psy1863         295 LLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLI  326 (425)
Q Consensus       295 a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~  326 (425)
                      +++.+-++.  |.+...+     ..++|++.|.+.+.+.
T Consensus       579 AlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  579 ALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             HhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence            888875555  4444333     7778888877776654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.25  E-value=3.2e-10  Score=94.41  Aligned_cols=120  Identities=18%  Similarity=0.108  Sum_probs=83.6

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN---SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYN  239 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  239 (425)
                      +..+.+++.+|..+...|++++|+.+|+++++..|+.   ..++.++|.++...|++++|+.++++++...|.++.++..
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  111 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN  111 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            4556677778888888888888888888887766543   3567788888888888888888888888888877777778


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         240 LGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       240 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      +|.++...|+...+...+..++.                    .+++|.+++++ ++..+|++.
T Consensus       112 lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~-a~~~~p~~~  154 (172)
T PRK02603        112 IAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQ-AIRLAPNNY  154 (172)
T ss_pred             HHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHH-HHhhCchhH
Confidence            88888777775555544444332                    24555566666 666665544

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.24  E-value=5e-11  Score=82.84  Aligned_cols=66  Identities=35%  Similarity=0.576  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q psy1863         200 SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLN-EYSDSLECFHKLQAIVP  265 (425)
Q Consensus       200 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p  265 (425)
                      +.+|..+|.+++..|++++|+.+|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            3445555555555555555555555555555555555555555555555 45555555555555544

...

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.24  E-value=3.6e-10  Score=93.75  Aligned_cols=83  Identities=20%  Similarity=0.155  Sum_probs=66.7

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN---SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYN  239 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  239 (425)
                      .....+++.+|.++...|++++|+..|++++.+.|+.   +.++.++|.++...|++++|+.+|++++.++|.....+.+
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~  111 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN  111 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence            3446677888888888888888888888888776653   3578888888888888888888888888888888888888


Q ss_pred             HHHHHH
Q psy1863         240 LGLAHK  245 (425)
Q Consensus       240 la~~~~  245 (425)
                      +|.++.
T Consensus       112 la~i~~  117 (168)
T CHL00033        112 MAVICH  117 (168)
T ss_pred             HHHHHH
Confidence            888887

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.23  E-value=2.3e-10  Score=84.64  Aligned_cols=99  Identities=32%  Similarity=0.444  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy1863         202 AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT  281 (425)
Q Consensus       202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  281 (425)
                      +++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.++++++...|.+..++..+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCcc
Q psy1863         282 GDVEQASDVNENLLLEAVRN  301 (425)
Q Consensus       282 g~~~~A~~~~~~~a~~~~p~  301 (425)
                      |++++|...+.+ +++..|+
T Consensus        82 ~~~~~a~~~~~~-~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEK-ALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHH-HHccCCC
Confidence            999999999999 9888773

>KOG1915|consensus

Probab=99.22  E-value=2.4e-07  Score=84.51  Aligned_cols=277  Identities=12%  Similarity=0.064  Sum_probs=222.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy1863          82 DALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSC  161 (425)
Q Consensus        82 d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~  161 (425)
                      +.|+.+...++.+.+..|....                             +....++.-|.--..++++..|..+++++
T Consensus        49 ~EL~eYq~RkRkefEd~irrnR-----------------------------~~~~~WikYaqwEesq~e~~RARSv~ERA   99 (677)
T KOG1915|consen   49 EELSEYQLRKRKEFEDQIRRNR-----------------------------LNMQVWIKYAQWEESQKEIQRARSVFERA   99 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            4778888888888877665431                             12334466677788889999999999999


Q ss_pred             c---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHH
Q psy1863         162 D---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALY  238 (425)
Q Consensus       162 ~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  238 (425)
                      +   ..+...|...+.+-+.......|..++++|+.+-|.-...|+.....--.+|+...|.+.|++-+...|+ ..+|.
T Consensus       100 Ldvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~  178 (677)
T KOG1915|consen  100 LDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWL  178 (677)
T ss_pred             HhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHH
Confidence            9   6677889999999999999999999999999999999999999988888999999999999999999987 67888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH-----HHHHHHh---
Q psy1863         239 NLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA-----LSQLHRE---  310 (425)
Q Consensus       239 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~-----~~~l~~~---  310 (425)
                      .....-.+.+..+.|...|++.+-.+| ....|...+..-...|+..-|...|+. |++...++.     +...+..   
T Consensus       179 sfI~fElRykeieraR~IYerfV~~HP-~v~~wikyarFE~k~g~~~~aR~Vyer-Aie~~~~d~~~e~lfvaFA~fEe~  256 (677)
T KOG1915|consen  179 SFIKFELRYKEIERARSIYERFVLVHP-KVSNWIKYARFEEKHGNVALARSVYER-AIEFLGDDEEAEILFVAFAEFEER  256 (677)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHheecc-cHHHHHHHHHHHHhcCcHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHHHHH
Confidence            888888888999999999999998887 678899999999999999999999999 999877665     3334443   


Q ss_pred             --hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHH-------------HhH------HhhchhhhcHHHHHHHHHHHhcC
Q psy1863         311 --MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQ-------------SIR------NSAHSSLAQDLEINKAVTFLRMN  369 (425)
Q Consensus       311 --~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------~~~------~~~~~~~~~~~~~~la~~~~~~g  369 (425)
                        .++.|...|+-+++..|.+-......+|.....             +..      .....+++-+.|+..-.+-...|
T Consensus       257 qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g  336 (677)
T KOG1915|consen  257 QKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVG  336 (677)
T ss_pred             HHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcC
Confidence              788889999999999998855444333322211             111      12334556688888888888899


Q ss_pred             CHHHHHHHHHHHHhhccCCcc
Q psy1863         370 DVSQAVDVLKSCDEMTSSAAT  390 (425)
Q Consensus       370 ~~~~A~~~~~~~~~~~~~~~~  390 (425)
                      +.+.-.++|+++....|....
T Consensus       337 ~~~~Ire~yErAIanvpp~~e  357 (677)
T KOG1915|consen  337 DKDRIRETYERAIANVPPASE  357 (677)
T ss_pred             CHHHHHHHHHHHHccCCchhH
Confidence            999999999999755544433

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.22  E-value=2.9e-10  Score=102.44  Aligned_cols=169  Identities=18%  Similarity=0.120  Sum_probs=131.5

Q ss_pred             hhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC--
Q psy1863         133 LAQDLEINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD--TYN--  199 (425)
Q Consensus       133 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~--  199 (425)
                      .+.+++...|..|...|++++|...|.++.         ...+.++...+.+|... ++++|+.++++++.+.  .+.  
T Consensus        33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~  111 (282)
T PF14938_consen   33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFS  111 (282)
T ss_dssp             HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HH
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHH
Confidence            356677788899999999999999999987         33345667777777665 9999999999999874  222  


Q ss_pred             --HHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCcC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---
Q psy1863         200 --SAAFVNLGNCAMAR-EDYVKGKELYVHALDNDAT------CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM---  267 (425)
Q Consensus       200 --~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---  267 (425)
                        ..++..+|.+|... |++++|+++|++++.....      ....+..+|.++...|+|++|++.|++.....-++   
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~  191 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL  191 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence              35688999999998 9999999999999987321      14577899999999999999999999998754321   


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         268 ----PEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       268 ----~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                          ...+...+.|+...||+..|...+++ ....+|+..
T Consensus       192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~-~~~~~~~F~  230 (282)
T PF14938_consen  192 KYSAKEYFLKAILCHLAMGDYVAARKALER-YCSQDPSFA  230 (282)
T ss_dssp             GHHHHHHHHHHHHHHHHTT-HHHHHHHHHH-HGTTSTTST
T ss_pred             chhHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCCCCC
Confidence                13456788899999999999999999 998888654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.22  E-value=3.6e-10  Score=93.74  Aligned_cols=115  Identities=19%  Similarity=0.266  Sum_probs=94.2

Q ss_pred             cCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC---cHHHHHHHHHHHHHcCCHHHH
Q psy1863         179 QGEVEQAEKMAEEACTADTYN--SAAFVNLGNCAMAREDYVKGKELYVHALDNDAT---CIEALYNLGLAHKHLNEYSDS  253 (425)
Q Consensus       179 ~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~g~~~~A  253 (425)
                      .+.+..+...+...++..+..  ..+++.+|.++...|++++|+..|++++.+.|+   .+.++.++|.++...|++++|
T Consensus        12 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA   91 (168)
T CHL00033         12 DKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKA   91 (168)
T ss_pred             ccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHH
Confidence            344556666665555555544  567899999999999999999999999988765   356899999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHH-------HcCCHHHHHHHHHH
Q psy1863         254 LECFHKLQAIVPSMPEVLYQIASLYE-------ITGDVEQASDVNEN  293 (425)
Q Consensus       254 ~~~~~~al~~~p~~~~~~~~la~~~~-------~~g~~~~A~~~~~~  293 (425)
                      +..+++++.+.|.....+.++|.++.       ..|+++.|...+.+
T Consensus        92 ~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033         92 LEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence            99999999999999999999999988       67777755555444

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.22  E-value=5.7e-11  Score=82.55  Aligned_cols=67  Identities=37%  Similarity=0.442  Sum_probs=64.7

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCc
Q psy1863         165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE-DYVKGKELYVHALDNDA  231 (425)
Q Consensus       165 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~  231 (425)
                      ++.+|..+|.+++..|++++|+.+|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            57899999999999999999999999999999999999999999999999 79999999999999987

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.19  E-value=4.5e-10  Score=93.50  Aligned_cols=120  Identities=21%  Similarity=0.306  Sum_probs=105.5

Q ss_pred             CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy1863         197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC---IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQ  273 (425)
Q Consensus       197 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  273 (425)
                      +....+++.+|..+...|++++|+.+|++++...|+.   ..++.++|.++...|++++|+..+.+++...|.+..++..
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  111 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN  111 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            4556779999999999999999999999999887653   5789999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHhhcCCch
Q psy1863         274 IASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEKCILTSAKLIAPSI  330 (425)
Q Consensus       274 la~~~~~~g~~~~A~~~~~~~a~~~~p~~~~~~l~~~~~~~A~~~~~~a~~~~~~~~  330 (425)
                      +|.++...|+...+...+.. ++.             .+.+|.+++++++...|++.
T Consensus       112 lg~~~~~~g~~~~a~~~~~~-A~~-------------~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603        112 IAVIYHKRGEKAEEAGDQDE-AEA-------------LFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HHHHHHHcCChHhHhhCHHH-HHH-------------HHHHHHHHHHHHHhhCchhH
Confidence            99999999998877777766 543             35678899999999998874

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.18  E-value=7.4e-09  Score=90.59  Aligned_cols=140  Identities=16%  Similarity=0.110  Sum_probs=119.9

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---HHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAA---FVNLGNCAMAREDYVKGKELYVHALDNDATC---IEA  236 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~  236 (425)
                      ...+..++..|..++..|++++|+..|++++...|..+.+   .+.+|.++++.+++++|+..+++.++.+|++   +.+
T Consensus        29 ~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a  108 (243)
T PRK10866         29 DNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV  108 (243)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence            4567778899999999999999999999999999998755   4899999999999999999999999998876   668


Q ss_pred             HHHHHHHHHHcC------------------CHHHHHHHHHHHHhhCCCCHHH-----------------HHHHHHHHHHc
Q psy1863         237 LYNLGLAHKHLN------------------EYSDSLECFHKLQAIVPSMPEV-----------------LYQIASLYEIT  281 (425)
Q Consensus       237 ~~~la~~~~~~g------------------~~~~A~~~~~~al~~~p~~~~~-----------------~~~la~~~~~~  281 (425)
                      ++.+|.++...+                  ...+|+..|++.++..|++..+                 -+.+|..|.+.
T Consensus       109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~  188 (243)
T PRK10866        109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKR  188 (243)
T ss_pred             HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            899998865544                  1357889999999999976431                 13567788999


Q ss_pred             CCHHHHHHHHHHHHHhcCcchH
Q psy1863         282 GDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       282 g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      |.+..|+.-++. +++..|+.+
T Consensus       189 ~~y~AA~~r~~~-v~~~Yp~t~  209 (243)
T PRK10866        189 GAYVAVVNRVEQ-MLRDYPDTQ  209 (243)
T ss_pred             CchHHHHHHHHH-HHHHCCCCc
Confidence            999999999999 999999877

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.18  E-value=1.3e-07  Score=84.53  Aligned_cols=185  Identities=15%  Similarity=0.061  Sum_probs=150.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------------
Q psy1863         138 EINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD------------------  196 (425)
Q Consensus       138 ~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------  196 (425)
                      .+..+......|+++.|..-..++.   |.++.+....-.+|...|++.+......+.-+..                  
T Consensus       156 ~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl  235 (400)
T COG3071         156 ELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL  235 (400)
T ss_pred             HHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence            3778899999999999999988888   8999999999999999999998887776654331                  


Q ss_pred             ------------------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHH
Q psy1863         197 ------------------------TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSD  252 (425)
Q Consensus       197 ------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~  252 (425)
                                              ..++.....++.-+..+|+.++|.+..+++++..-+ +.....++  ...-+++..
T Consensus       236 L~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-~~L~~~~~--~l~~~d~~~  312 (400)
T COG3071         236 LQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-PRLCRLIP--RLRPGDPEP  312 (400)
T ss_pred             HHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-hhHHHHHh--hcCCCCchH
Confidence                                    233555667777888999999999999999987543 22222222  245678888


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH-HHHHHHh-----hHHHHHHHHHHHHhhc
Q psy1863         253 SLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA-LSQLHRE-----MKHEAEKCILTSAKLI  326 (425)
Q Consensus       253 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~-~~~l~~~-----~~~~A~~~~~~a~~~~  326 (425)
                      =++..++.++..|+++..+..||..+.+.+.+.+|..+|+. +++..|+.. +..++..     +..+|.+.+++++...
T Consensus       313 l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~lea-Al~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~  391 (400)
T COG3071         313 LIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEA-ALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLT  391 (400)
T ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHH-HHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999999999 999998887 7777776     8888888888887543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.18  E-value=2.6e-09  Score=86.13  Aligned_cols=116  Identities=19%  Similarity=0.197  Sum_probs=79.6

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---HHHHHHHHHHHHHcCCHH
Q psy1863         178 LQGEVEQAEKMAEEACTADTYN---SAAFVNLGNCAMAREDYVKGKELYVHALDNDATC---IEALYNLGLAHKHLNEYS  251 (425)
Q Consensus       178 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~  251 (425)
                      ..++...+...++..++.+|++   ..+.+.+|.+++..|++++|...|+.++...|+.   +.+...+|.++...|+++
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            4677777777777777777776   3456667777777777777777777777766543   346667777777777777


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863         252 DSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLL  295 (425)
Q Consensus       252 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a  295 (425)
                      +|+..++. +...+-.+.++..+|.++...|++++|+..|++ +
T Consensus       103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~-A  144 (145)
T PF09976_consen  103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQK-A  144 (145)
T ss_pred             HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH-h
Confidence            77777755 223333455666777777777777777777776 5

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=1.1e-09  Score=94.90  Aligned_cols=122  Identities=20%  Similarity=0.104  Sum_probs=109.6

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC---CHHHHHHHH
Q psy1863         181 EVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLN---EYSDSLECF  257 (425)
Q Consensus       181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~  257 (425)
                      ..+.-+.-++.-+..+|++..-|..||.+|+.+|+++.|...|.+++++.|+++..+..+|.+++.+.   ...++...+
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            45677778888899999999999999999999999999999999999999999999999999887654   456899999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         258 HKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       258 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      ++++..+|.+..+.+.||..+...|++.+|+..++. .++..|.+.
T Consensus       217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~-lL~~lp~~~  261 (287)
T COG4235         217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQM-LLDLLPADD  261 (287)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHH-HHhcCCCCC
Confidence            999999999999999999999999999999999999 888776655

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.16  E-value=2.6e-09  Score=91.26  Aligned_cols=138  Identities=21%  Similarity=0.176  Sum_probs=112.3

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---HHHHH
Q psy1863         165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN---SAAFVNLGNCAMAREDYVKGKELYVHALDNDATC---IEALY  238 (425)
Q Consensus       165 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~  238 (425)
                      .+..++..|..++..|++.+|+..|++++...|.+   +.+.+.+|.+++..|++++|+..+++.++.+|++   +.+++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            56788999999999999999999999999998876   4779999999999999999999999999998876   56888


Q ss_pred             HHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCHHH-----------------HHHHHHHHHHcCCHHHHHHH
Q psy1863         239 NLGLAHKHLN-----------EYSDSLECFHKLQAIVPSMPEV-----------------LYQIASLYEITGDVEQASDV  290 (425)
Q Consensus       239 ~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~-----------------~~~la~~~~~~g~~~~A~~~  290 (425)
                      .+|.+++.+.           ...+|+..|+..+...|++..+                 -+.+|..|.+.|.+..|+..
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r  163 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR  163 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            8999876543           3458999999999999976532                 24567888889999999999


Q ss_pred             HHHHHHhcCcchH
Q psy1863         291 NENLLLEAVRNDA  303 (425)
Q Consensus       291 ~~~~a~~~~p~~~  303 (425)
                      ++. +++..|+.+
T Consensus       164 ~~~-v~~~yp~t~  175 (203)
T PF13525_consen  164 FQY-VIENYPDTP  175 (203)
T ss_dssp             HHH-HHHHSTTSH
T ss_pred             HHH-HHHHCCCCc
Confidence            999 999999887

>KOG3785|consensus

Probab=99.16  E-value=1.9e-08  Score=88.31  Aligned_cols=147  Identities=18%  Similarity=0.198  Sum_probs=123.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------C-
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA--------------D-  196 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------~-  196 (425)
                      .++.+.+|.+++..|+|++|...|.-+.   ...+..+.+|+.+++..|.|.+|.....++-+.              + 
T Consensus        57 ~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklnd  136 (557)
T KOG3785|consen   57 DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLND  136 (557)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCc
Confidence            4556788999999999999999999887   455678999999999999999998877665321              1 


Q ss_pred             -----------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy1863         197 -----------TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP  265 (425)
Q Consensus       197 -----------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  265 (425)
                                 .+..+-...++.+....-.|.+|+..|.+++..+|+......+++.||.++.-|+-+.+.+.-.++..|
T Consensus       137 Ek~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~p  216 (557)
T KOG3785|consen  137 EKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFP  216 (557)
T ss_pred             HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCC
Confidence                       122233567788888888999999999999999999988889999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHc
Q psy1863         266 SMPEVLYQIASLYEIT  281 (425)
Q Consensus       266 ~~~~~~~~la~~~~~~  281 (425)
                      +++.+...++....++
T Consensus       217 dStiA~NLkacn~fRl  232 (557)
T KOG3785|consen  217 DSTIAKNLKACNLFRL  232 (557)
T ss_pred             CcHHHHHHHHHHHhhh
Confidence            9998888777766554

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.15  E-value=1.6e-10  Score=83.72  Aligned_cols=80  Identities=29%  Similarity=0.389  Sum_probs=46.8

Q ss_pred             cCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHH
Q psy1863         179 QGEVEQAEKMAEEACTADTY--NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC  256 (425)
Q Consensus       179 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~  256 (425)
                      +|++++|+.+++++++..|.  +...++.+|.+++..|+|++|+..+++ ...+|.++...+.+|.++..+|++++|+..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            45666666666666666653  234455566666666666666666666 555555555555666666666666666666


Q ss_pred             HHH
Q psy1863         257 FHK  259 (425)
Q Consensus       257 ~~~  259 (425)
                      +++
T Consensus        81 l~~   83 (84)
T PF12895_consen   81 LEK   83 (84)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.15  E-value=2.1e-09  Score=96.45  Aligned_cols=185  Identities=18%  Similarity=0.116  Sum_probs=145.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhcc-----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy1863         140 NKAVTFLRMNDVSQAVDVLKSCD-----EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE  214 (425)
Q Consensus       140 ~~a~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  214 (425)
                      .++..+...++-+.++..++..+     +.++.+....|.++...|++++|++.+.+.     .+.+.......++...+
T Consensus        71 ~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~  145 (290)
T PF04733_consen   71 LLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMN  145 (290)
T ss_dssp             HHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcC
Confidence            33444444457777888777766     245566677788899999999999988764     67788888899999999


Q ss_pred             CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy1863         215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLN--EYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNE  292 (425)
Q Consensus       215 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  292 (425)
                      +++.|.+.++.+-+.+++..-+....+.+....|  ++++|.-.|++.....|.++..+..++.++..+|++++|...+.
T Consensus       146 R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~  225 (290)
T PF04733_consen  146 RPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLE  225 (290)
T ss_dssp             -HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            9999999999999888777666666666666666  69999999999888888899999999999999999999999999


Q ss_pred             HHHHhcCcchH--HHHHHHh------hHHHHHHHHHHHHhhcCCch
Q psy1863         293 NLLLEAVRNDA--LSQLHRE------MKHEAEKCILTSAKLIAPSI  330 (425)
Q Consensus       293 ~~a~~~~p~~~--~~~l~~~------~~~~A~~~~~~a~~~~~~~~  330 (425)
                      + ++..+|.++  +.++..+      ..+.+.+++.+.....|...
T Consensus       226 ~-al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~  270 (290)
T PF04733_consen  226 E-ALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP  270 (290)
T ss_dssp             H-HCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred             H-HHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence            9 999999999  7777666      33567778888887888765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK15331 chaperone protein SicA; Provisional

Probab=99.14  E-value=2.6e-09  Score=84.75  Aligned_cols=103  Identities=16%  Similarity=0.280  Sum_probs=88.8

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL  242 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  242 (425)
                      +..-+..+..|.-++..|++++|...|+-....+|.++..+..||.|+..+|+|++|+..|..+..++++++...+..|.
T Consensus        34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq  113 (165)
T PRK15331         34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ  113 (165)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence            45567778888888889999999999988888889898889999999999999999999999988888888888888999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCC
Q psy1863         243 AHKHLNEYSDSLECFHKLQAIVPS  266 (425)
Q Consensus       243 ~~~~~g~~~~A~~~~~~al~~~p~  266 (425)
                      |++.+|+.+.|+.+|..++. .|.
T Consensus       114 C~l~l~~~~~A~~~f~~a~~-~~~  136 (165)
T PRK15331        114 CQLLMRKAAKARQCFELVNE-RTE  136 (165)
T ss_pred             HHHHhCCHHHHHHHHHHHHh-Ccc
Confidence            99999999999999888887 344

>KOG2376|consensus

Probab=99.14  E-value=2e-08  Score=93.70  Aligned_cols=230  Identities=11%  Similarity=0.037  Sum_probs=146.8

Q ss_pred             HHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHH
Q psy1863         142 AVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVK  218 (425)
Q Consensus       142 a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  218 (425)
                      -..+...|+|++|.+...+++   |+...+...--.+....++|++|+...+.-......+ ...+..+.|.+++++.++
T Consensus        19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~De   97 (652)
T KOG2376|consen   19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDE   97 (652)
T ss_pred             HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHH
Confidence            445667788888888888887   7888888888888888888888885444322211111 112677888888888888


Q ss_pred             HHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy1863         219 GKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEA  298 (425)
Q Consensus       219 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~  298 (425)
                      |+.+++   ..++.+..+....|.+++++|+|++|...|+..++.+.++.+.-......-...  --.+ + ..+ .+..
T Consensus        98 alk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a--~l~~-~-~~q-~v~~  169 (652)
T KOG2376|consen   98 ALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA--ALQV-Q-LLQ-SVPE  169 (652)
T ss_pred             HHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH--hhhH-H-HHH-hccC
Confidence            888888   455666777888888888888899988888888777665544433222211110  0001 1 233 3444


Q ss_pred             CcchH---HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCC
Q psy1863         299 VRNDA---LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMND  370 (425)
Q Consensus       299 ~p~~~---~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  370 (425)
                      .|++.   +++.+-.     ++.+|++.+++++++........-.          ....+......+...++-++..+|+
T Consensus       170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~----------~eEeie~el~~IrvQlayVlQ~~Gq  239 (652)
T KOG2376|consen  170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDT----------NEEEIEEELNPIRVQLAYVLQLQGQ  239 (652)
T ss_pred             CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhccccc----------chhhHHHHHHHHHHHHHHHHHHhcc
Confidence            45433   4444333     7888888888776554322110000          0011111123567789999999999


Q ss_pred             HHHHHHHHHHHHhhccCCcc
Q psy1863         371 VSQAVDVLKSCDEMTSSAAT  390 (425)
Q Consensus       371 ~~~A~~~~~~~~~~~~~~~~  390 (425)
                      -++|..+|..+.+..+.+..
T Consensus       240 t~ea~~iy~~~i~~~~~D~~  259 (652)
T KOG2376|consen  240 TAEASSIYVDIIKRNPADEP  259 (652)
T ss_pred             hHHHHHHHHHHHHhcCCCch
Confidence            99999999999876665543

>KOG1941|consensus

Probab=99.14  E-value=2.7e-08  Score=87.57  Aligned_cols=164  Identities=18%  Similarity=0.235  Sum_probs=134.4

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc--------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD--------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS------  200 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------  200 (425)
                      -+.+++++..+.+..+|.+++.+-+..+        ..-..+...+|..+..++.++++++.|+.|++....+.      
T Consensus        83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl  162 (518)
T KOG1941|consen   83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL  162 (518)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence            3445788888888888999998877766        12345677899999999999999999999998764432      


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----
Q psy1863         201 AAFVNLGNCAMAREDYVKGKELYVHALDNDAT----------CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP-----  265 (425)
Q Consensus       201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----  265 (425)
                      .++..+|..|....++++|..+..++.++..+          ...+++.++..+..+|...+|.++++++.++.-     
T Consensus       163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr  242 (518)
T KOG1941|consen  163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR  242 (518)
T ss_pred             ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence            56889999999999999999999999887322          145778999999999999999999999977632     


Q ss_pred             -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q psy1863         266 -SMPEVLYQIASLYEITGDVEQASDVNENLLLEAV  299 (425)
Q Consensus       266 -~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~  299 (425)
                       -.......+|.+|...|+.+.|..-|+. +....
T Consensus       243 a~~arc~~~~aDIyR~~gd~e~af~rYe~-Am~~m  276 (518)
T KOG1941|consen  243 ALQARCLLCFADIYRSRGDLERAFRRYEQ-AMGTM  276 (518)
T ss_pred             HHHHHHHHHHHHHHHhcccHhHHHHHHHH-HHHHH
Confidence             2345677899999999999999999999 87653

>KOG0543|consensus

Probab=99.13  E-value=1.5e-09  Score=97.42  Aligned_cols=123  Identities=24%  Similarity=0.324  Sum_probs=83.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCC---------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHH
Q psy1863         171 NLSFIYFLQGEVEQAEKMAEEACTADTY---------------NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIE  235 (425)
Q Consensus       171 ~lg~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  235 (425)
                      .-|..|++.|+|..|...|++++..-+.               -..++.|++.|+.++++|.+|+..+.++|.++|++..
T Consensus       213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K  292 (397)
T KOG0543|consen  213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK  292 (397)
T ss_pred             HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh
Confidence            4455555555555555555555543211               1235777777788888888888888888888877788


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHH
Q psy1863         236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA-SDVNEN  293 (425)
Q Consensus       236 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~  293 (425)
                      +++..|.++..+|+|+.|+..|++++++.|++-.+...+..+..+...+.+. ...|.+
T Consensus       293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~  351 (397)
T KOG0543|consen  293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN  351 (397)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888888888888887777777777776655444333 455555

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.13  E-value=6.5e-09  Score=100.58  Aligned_cols=139  Identities=12%  Similarity=0.072  Sum_probs=117.8

Q ss_pred             cchHHH--HHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHhc
Q psy1863         163 EMTSSA--ATNLSFIYFLQGE---VEQAEKMAEEACTADTYNSAAFVNLGNCAMAR--------EDYVKGKELYVHALDN  229 (425)
Q Consensus       163 ~~~~~~--~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~  229 (425)
                      |.++.+  ++..|.-+...++   +..|+.+|+++++++|+++.++..++.++...        ++...+....++++.+
T Consensus       334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al  413 (517)
T PRK10153        334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL  413 (517)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence            444444  4566777766555   78999999999999999999999988887654        2345667777776664


Q ss_pred             --CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         230 --DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       230 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                        +|..+.++..+|..+...|++++|...+++++.++| +..+|..+|.++...|++++|+..|++ |+.++|.++
T Consensus       414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~-A~~L~P~~p  487 (517)
T PRK10153        414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYST-AFNLRPGEN  487 (517)
T ss_pred             ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCCCc
Confidence              777788999999999999999999999999999999 578999999999999999999999999 999999988

>KOG0543|consensus

Probab=99.13  E-value=1.6e-09  Score=97.19  Aligned_cols=128  Identities=15%  Similarity=0.189  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcc------------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy1863         138 EINKAVTFLRMNDVSQAVDVLKSCD------------------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN  199 (425)
Q Consensus       138 ~~~~a~~~~~~g~~~~A~~~~~~~~------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  199 (425)
                      .-..|..+++.|+|..|...|++++                  .....++.+++.|+.++++|.+|+..+.++|..+|+|
T Consensus       211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N  290 (397)
T KOG0543|consen  211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN  290 (397)
T ss_pred             HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence            3567999999999999999999987                  1234578999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhhCC
Q psy1863         200 SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDS-LECFHKLQAIVP  265 (425)
Q Consensus       200 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~p  265 (425)
                      ..+++..|.++..+|+|+.|+..|++++++.|++..+...+..+..+..++.+. .+.|..++...+
T Consensus       291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            999999999999999999999999999999999999999999888877666554 778888876654

>PRK15331 chaperone protein SicA; Provisional

Probab=99.13  E-value=1.2e-09  Score=86.58  Aligned_cols=107  Identities=6%  Similarity=-0.026  Sum_probs=99.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy1863         195 ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQI  274 (425)
Q Consensus       195 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  274 (425)
                      +.++.....+..|.-++..|++++|...|+-....+|.++..+..||.|+..+|+|++|+..|..+..+++++|...+..
T Consensus        32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a  111 (165)
T PRK15331         32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT  111 (165)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence            34555677889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         275 ASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       275 a~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      |.|+..+|+.+.|..+|.. ++. .|.+.
T Consensus       112 gqC~l~l~~~~~A~~~f~~-a~~-~~~~~  138 (165)
T PRK15331        112 GQCQLLMRKAAKARQCFEL-VNE-RTEDE  138 (165)
T ss_pred             HHHHHHhCCHHHHHHHHHH-HHh-CcchH
Confidence            9999999999999999999 887 46655

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.12  E-value=1.1e-08  Score=92.35  Aligned_cols=164  Identities=15%  Similarity=0.167  Sum_probs=117.2

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCC--CC--
Q psy1863         134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQ-GEVEQAEKMAEEACTADT--YN--  199 (425)
Q Consensus       134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p--~~--  199 (425)
                      +...+...+.++.+. ++++|+.+|++++         ..-+.++..+|.+|... |++++|+++|++|++...  +.  
T Consensus        74 Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~  152 (282)
T PF14938_consen   74 AAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPH  152 (282)
T ss_dssp             HHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChh
Confidence            344445555555444 8888998888887         33467888999999999 999999999999998742  22  


Q ss_pred             --HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--
Q psy1863         200 --SAAFVNLGNCAMAREDYVKGKELYVHALDNDATC-------IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMP--  268 (425)
Q Consensus       200 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--  268 (425)
                        ..++..+|.++...|+|++|++.|+++....-++       ...+...+.|++..|++..|...+++....+|...  
T Consensus       153 ~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s  232 (282)
T PF14938_consen  153 SAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS  232 (282)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence              2457899999999999999999999998763221       24567788999999999999999999999988543  


Q ss_pred             ---HHHHHHHHHHHH--cCCHHHHHHHHHHHHHhcC
Q psy1863         269 ---EVLYQIASLYEI--TGDVEQASDVNENLLLEAV  299 (425)
Q Consensus       269 ---~~~~~la~~~~~--~g~~~~A~~~~~~~a~~~~  299 (425)
                         .....|..++..  ...++.|+.-|.. ..+++
T Consensus       233 ~E~~~~~~l~~A~~~~D~e~f~~av~~~d~-~~~ld  267 (282)
T PF14938_consen  233 REYKFLEDLLEAYEEGDVEAFTEAVAEYDS-ISRLD  267 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-CCCHHHHCHHHTT-SS---
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHcc-cCccH
Confidence               234445555443  3567777777777 44443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.12  E-value=4.3e-08  Score=94.33  Aligned_cols=221  Identities=14%  Similarity=0.085  Sum_probs=148.3

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q psy1863         165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAH  244 (425)
Q Consensus       165 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~  244 (425)
                      ..++......++...|++++|++++.+....-++...+.-..|.++..+|++++|...|+..+..+|++...+..+..+.
T Consensus         3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~   82 (517)
T PF12569_consen    3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL   82 (517)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            45677788899999999999999999988888999999999999999999999999999999999999999999888887


Q ss_pred             HHcC-----CHHHHHHHHHHHHhhCCC--------------------------------CHHHHHHHHHHHHHcCCHHHH
Q psy1863         245 KHLN-----EYSDSLECFHKLQAIVPS--------------------------------MPEVLYQIASLYEITGDVEQA  287 (425)
Q Consensus       245 ~~~g-----~~~~A~~~~~~al~~~p~--------------------------------~~~~~~~la~~~~~~g~~~~A  287 (425)
                      ....     ..+.-...|++.....|.                                .|..+.++-.+|....+..-.
T Consensus        83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i  162 (517)
T PF12569_consen   83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAII  162 (517)
T ss_pred             hhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHH
Confidence            4333     456667777777666652                                122223333333321111111


Q ss_pred             HHHHHHH--HHhc-------------CcchH---HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHH
Q psy1863         288 SDVNENL--LLEA-------------VRNDA---LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQS  344 (425)
Q Consensus       288 ~~~~~~~--a~~~-------------~p~~~---~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  344 (425)
                      ...+...  .++.             .|...   +..++..     ++++|+.++++++...|..++.+...|-.+-..+
T Consensus       163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G  242 (517)
T PF12569_consen  163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAG  242 (517)
T ss_pred             HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC
Confidence            1122220  1110             11111   2344444     8889999999999999988877666653222222


Q ss_pred             hHHhhchhh---------hcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy1863         345 IRNSAHSSL---------AQDLEINKAVTFLRMNDVSQAVDVLKSCDEMT  385 (425)
Q Consensus       345 ~~~~~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  385 (425)
                      ....+....         ..-+-...+..+++.|++++|.+.+..|-+..
T Consensus       243 ~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  243 DLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             CHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence            222222111         22233347888899999999999999995444

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.12  E-value=4.5e-09  Score=84.75  Aligned_cols=121  Identities=17%  Similarity=0.173  Sum_probs=101.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhcc---cch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHH
Q psy1863         140 NKAVTFLRMNDVSQAVDVLKSCD---EMT---SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN---SAAFVNLGNCA  210 (425)
Q Consensus       140 ~~a~~~~~~g~~~~A~~~~~~~~---~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~  210 (425)
                      ..+......++...+...++.++   |..   ..+...+|.+++..|++++|...|+.++...|+.   +.+.+.++.++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~   95 (145)
T PF09976_consen   16 EQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARIL   95 (145)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence            34445557889998888888887   444   6778889999999999999999999999987665   35688899999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863         211 MAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQ  261 (425)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  261 (425)
                      ...|++++|+..++. +...+..+.++..+|.++...|++++|+..|++++
T Consensus        96 ~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   96 LQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            999999999999976 33444557788899999999999999999999874

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.11  E-value=5e-10  Score=76.67  Aligned_cols=62  Identities=23%  Similarity=0.356  Sum_probs=31.2

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy1863         206 LGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM  267 (425)
Q Consensus       206 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  267 (425)
                      +|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            44455555555555555555555555555555555555555555555555555555555543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.10  E-value=3e-10  Score=82.21  Aligned_cols=80  Identities=26%  Similarity=0.385  Sum_probs=72.6

Q ss_pred             hcCHHHHHHHHHHHHhcCcC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy1863         213 REDYVKGKELYVHALDNDAT--CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDV  290 (425)
Q Consensus       213 ~g~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  290 (425)
                      +|+|++|+.+++++++..|.  +...++.+|.++++.|++++|+..+++ ...+|.++...+.+|.|+..+|++++|+..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            68999999999999999984  567788899999999999999999999 888888889999999999999999999999


Q ss_pred             HHH
Q psy1863         291 NEN  293 (425)
Q Consensus       291 ~~~  293 (425)
                      +++
T Consensus        81 l~~   83 (84)
T PF12895_consen   81 LEK   83 (84)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            987

>KOG2047|consensus

Probab=99.09  E-value=8e-07  Score=84.06  Aligned_cols=195  Identities=9%  Similarity=0.107  Sum_probs=158.4

Q ss_pred             HHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHH
Q psy1863         143 VTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTY----NSAAFVNLGNC  209 (425)
Q Consensus       143 ~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~  209 (425)
                      .+-+..|+..+-+..|.+++         ......|..+|..|...|+.+.|...|+++....-.    -..+|...|..
T Consensus       355 RV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waem  434 (835)
T KOG2047|consen  355 RVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEM  434 (835)
T ss_pred             hhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHH
Confidence            45566788888899998888         233567899999999999999999999999987632    25789999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCcC------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy1863         210 AMAREDYVKGKELYVHALDNDAT------------------CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVL  271 (425)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~~~------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  271 (425)
                      -....+++.|+++.+.+......                  +..+|..++...-..|=++.....|++.+.+.--.|...
T Consensus       435 Elrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii  514 (835)
T KOG2047|consen  435 ELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII  514 (835)
T ss_pred             HHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH
Confidence            99999999999999999865211                  245778888888899999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH----HHH--------HHHhhHHHHHHHHHHHHhhcCCchhhHhhchH
Q psy1863         272 YQIASLYEITGDVEQASDVNENLLLEAVRNDA----LSQ--------LHREMKHEAEKCILTSAKLIAPSIEDNFSNGY  338 (425)
Q Consensus       272 ~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~----~~~--------l~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  338 (425)
                      .+.|..+....-++++.+.|++ .+.+.|-..    |..        +|....+.|...|+++++..|+...-...+.|
T Consensus       515 ~NyAmfLEeh~yfeesFk~YEr-gI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlY  592 (835)
T KOG2047|consen  515 INYAMFLEEHKYFEESFKAYER-GISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLY  592 (835)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHc-CCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            9999999999999999999999 998865322    221        12228899999999999999865544444433

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=4.2e-09  Score=91.39  Aligned_cols=106  Identities=19%  Similarity=0.192  Sum_probs=100.2

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcCcCcHHHHHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE---DYVKGKELYVHALDNDATCIEALYN  239 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~  239 (425)
                      |.++..|..||.+|+.+|+++.|...|.+++++.|+++..+..+|.++..+.   .-.++...+++++..+|++..+.+.
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l  232 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL  232 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence            9999999999999999999999999999999999999999999999987654   3678999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy1863         240 LGLAHKHLNEYSDSLECFHKLQAIVPSMP  268 (425)
Q Consensus       240 la~~~~~~g~~~~A~~~~~~al~~~p~~~  268 (425)
                      ||..++..|+|.+|+..++..+...|.+.
T Consensus       233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         233 LAFAAFEQGDYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence            99999999999999999999999988654

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.08  E-value=5.9e-10  Score=76.33  Aligned_cols=65  Identities=25%  Similarity=0.281  Sum_probs=57.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcH
Q psy1863         170 TNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCI  234 (425)
Q Consensus       170 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  234 (425)
                      +.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            35788999999999999999999999999999999999999999999999999999999999875

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.06  E-value=8.9e-09  Score=90.72  Aligned_cols=105  Identities=9%  Similarity=0.108  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---HHHHH
Q psy1863         166 SSAATNLSFIY-FLQGEVEQAEKMAEEACTADTYN---SAAFVNLGNCAMAREDYVKGKELYVHALDNDATC---IEALY  238 (425)
Q Consensus       166 ~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~  238 (425)
                      ....+..|..+ +..|+|++|+..|+..++..|++   +.+++.+|.+|+..|++++|+..|++++..+|++   +.+++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            34555555554 45677777777777777777766   4667777777777777777777777777766653   66677


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy1863         239 NLGLAHKHLNEYSDSLECFHKLQAIVPSMPEV  270 (425)
Q Consensus       239 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  270 (425)
                      .+|.++..+|++++|...|+++++..|+...+
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence            77777777777777777777777777765543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.06  E-value=1.9e-07  Score=98.79  Aligned_cols=286  Identities=15%  Similarity=0.071  Sum_probs=190.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcc---cc---------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----
Q psy1863         137 LEINKAVTFLRMNDVSQAVDVLKSCD---EM---------TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS----  200 (425)
Q Consensus       137 ~~~~~a~~~~~~g~~~~A~~~~~~~~---~~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----  200 (425)
                      +....+..+...|++++|...+..+.   +.         ...+...+|.++...|++++|...+++++...|...    
T Consensus       411 l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  490 (903)
T PRK04841        411 LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSR  490 (903)
T ss_pred             hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHH
Confidence            34566888889999999999888765   11         234556678888999999999999999988544322    


Q ss_pred             -HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------
Q psy1863         201 -AAFVNLGNCAMAREDYVKGKELYVHALDNDAT------CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS-------  266 (425)
Q Consensus       201 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------  266 (425)
                       .+...+|.++...|++++|...+++++.....      ...++.++|.++...|++++|...+.+++.....       
T Consensus       491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~  570 (903)
T PRK04841        491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP  570 (903)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence             34677888999999999999999999876332      1346678899999999999999999998876321       


Q ss_pred             -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcc----hH---HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhH
Q psy1863         267 -MPEVLYQIASLYEITGDVEQASDVNENLLLEAVRN----DA---LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDN  333 (425)
Q Consensus       267 -~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~----~~---~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~  333 (425)
                       ....+..+|.++...|++++|...+.+ ++.....    ..   +..++.+     +++.|...+.++..+.+......
T Consensus       571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~  649 (903)
T PRK04841        571 MHEFLLRIRAQLLWEWARLDEAEQCARK-GLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHS  649 (903)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHH-hHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccH
Confidence             123456788889999999999999999 8775322    11   3344444     88999999988877644321100


Q ss_pred             hhc------h-HHHHHHHhHHhhc-------------hhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcc---
Q psy1863         334 FSN------G-YNWCVQSIRNSAH-------------SSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT---  390 (425)
Q Consensus       334 ~~~------~-~~~~~~~~~~~~~-------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---  390 (425)
                      ...      . ..+...+....+.             ..........++.++...|++++|+..+.++.........   
T Consensus       650 ~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~  729 (903)
T PRK04841        650 DWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSD  729 (903)
T ss_pred             hHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHH
Confidence            000      0 0000000100000             0001122456888999999999999999988654322222   


Q ss_pred             chhHHHHHhhhccCcCCCCcHHHHHHhHhHHhh
Q psy1863         391 NLSFIYFLVSSEFQYLPTSEVPIYLENLLTVLQ  423 (425)
Q Consensus       391 ~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~  423 (425)
                      .......+...........+|..++.+++++..
T Consensus       730 ~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~  762 (903)
T PRK04841        730 LNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN  762 (903)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence            222222333333444467788888888887654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.03  E-value=1.1e-08  Score=90.11  Aligned_cols=104  Identities=12%  Similarity=0.164  Sum_probs=94.8

Q ss_pred             CHHHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCcCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHH
Q psy1863         199 NSAAFVNLGNCA-MAREDYVKGKELYVHALDNDATC---IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS---MPEVL  271 (425)
Q Consensus       199 ~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~  271 (425)
                      .....+..+..+ +..|+|++|+..|++.++.+|++   +.+++.+|.+|+..|++++|+..|++++...|+   .++++
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            346677777776 66799999999999999999987   689999999999999999999999999999887   56899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         272 YQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       272 ~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      +.+|.++..+|++++|...|++ +++..|++.
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~-vi~~yP~s~  251 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQ-VIKKYPGTD  251 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHH-HHHHCcCCH
Confidence            9999999999999999999999 999999887

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.03  E-value=1.2e-08  Score=78.00  Aligned_cols=96  Identities=21%  Similarity=0.138  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC---cHHHHHHH
Q psy1863         167 SAATNLSFIYFLQGEVEQAEKMAEEACTADTYN---SAAFVNLGNCAMAREDYVKGKELYVHALDNDAT---CIEALYNL  240 (425)
Q Consensus       167 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~l  240 (425)
                      .+++.+|.++-..|+.++|+.+|++++......   ..+++.+|.++..+|++++|+..+++++...|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            567788888888888888888888888765433   456788888888888888888888888887777   66777778


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Q psy1863         241 GLAHKHLNEYSDSLECFHKLQA  262 (425)
Q Consensus       241 a~~~~~~g~~~~A~~~~~~al~  262 (425)
                      +.++...|+.++|+..+-.++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            8888888888888888877664

>PRK11906 transcriptional regulator; Provisional

Probab=99.02  E-value=2.2e-08  Score=92.33  Aligned_cols=134  Identities=14%  Similarity=0.049  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHcCC---HHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHhcCcCc
Q psy1863         169 ATNLSFIYFLQGE---VEQAEKMAEEAC---TADTYNSAAFVNLGNCAMAR---------EDYVKGKELYVHALDNDATC  233 (425)
Q Consensus       169 ~~~lg~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~  233 (425)
                      .+..|...+..+.   .+.|+.+|.+++   .++|....++..++.|++..         ....+|....+++++++|.+
T Consensus       258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D  337 (458)
T PRK11906        258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD  337 (458)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence            3666666655553   467888999999   99999999999999998764         24568899999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         234 IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       234 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      +.++..+|.+....|+++.|+..|++++.++|+.+.+++..|.+....|+.++|.+.+++ +++++|.-.
T Consensus       338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~-alrLsP~~~  406 (458)
T PRK11906        338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK-SLQLEPRRR  406 (458)
T ss_pred             HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH-HhccCchhh
Confidence            999999999999999999999999999999999999999999999999999999999999 999999765

>PRK11906 transcriptional regulator; Provisional

Probab=99.01  E-value=3.9e-08  Score=90.72  Aligned_cols=155  Identities=10%  Similarity=0.063  Sum_probs=130.1

Q ss_pred             HHHHHHHHHcC---CHHHHHHHHHhcc------cchHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCH
Q psy1863         139 INKAVTFLRMN---DVSQAVDVLKSCD------EMTSSAATNLSFIYFLQ---------GEVEQAEKMAEEACTADTYNS  200 (425)
Q Consensus       139 ~~~a~~~~~~g---~~~~A~~~~~~~~------~~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~p~~~  200 (425)
                      +..|...+..+   ..+.|..+|.+++      |..+.++..++.|++..         .+..+|....+++++++|.++
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da  338 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG  338 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence            56677776665   4567888899988      77789999999998764         345678999999999999999


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH-HHHHHHH
Q psy1863         201 AAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLY-QIASLYE  279 (425)
Q Consensus       201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~la~~~~  279 (425)
                      .++..+|.+....++++.|...|++++.++|+.+.+++..|.+....|+.++|++.++++++++|....+-. .+-.-.+
T Consensus       339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~  418 (458)
T PRK11906        339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY  418 (458)
T ss_pred             HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999997655433 3333133


Q ss_pred             HcCCHHHHHHHHHH
Q psy1863         280 ITGDVEQASDVNEN  293 (425)
Q Consensus       280 ~~g~~~~A~~~~~~  293 (425)
                      -....+.|+.+|-+
T Consensus       419 ~~~~~~~~~~~~~~  432 (458)
T PRK11906        419 VPNPLKNNIKLYYK  432 (458)
T ss_pred             cCCchhhhHHHHhh
Confidence            44567788887766

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.01  E-value=2.9e-08  Score=96.16  Aligned_cols=132  Identities=11%  Similarity=0.070  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHcCC---HHHHHHHHHhcc---cchHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhc--CCCCH
Q psy1863         137 LEINKAVTFLRMND---VSQAVDVLKSCD---EMTSSAATNLSFIYFLQG--------EVEQAEKMAEEACTA--DTYNS  200 (425)
Q Consensus       137 ~~~~~a~~~~~~g~---~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~~--~p~~~  200 (425)
                      -.+..|..++..++   +..|+.+|++++   |+.+.++..++.++....        +...+.....+++..  +|..+
T Consensus       341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~  420 (517)
T PRK10153        341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLP  420 (517)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCCh
Confidence            34566888877655   889999999999   999999999888876542        345666667776664  77788


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy1863         201 AAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPE  269 (425)
Q Consensus       201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  269 (425)
                      .++..+|......|++++|...+++++.++|+ ..+|..+|.++...|++++|++.|++|+.++|..+.
T Consensus       421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            89999999999999999999999999999995 889999999999999999999999999999998775

>KOG4340|consensus

Probab=99.00  E-value=1.9e-08  Score=86.30  Aligned_cols=152  Identities=15%  Similarity=0.121  Sum_probs=107.0

Q ss_pred             HHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q psy1863         146 LRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKEL  222 (425)
Q Consensus       146 ~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  222 (425)
                      .+..+|..||+++....   |.+...+..+|.||+...+|..|..+|++.-...|......+..+..+.+.+.+..|+..
T Consensus        21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV  100 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV  100 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            55666777777766555   555666777777777777777777777777777777766666666666666666666655


Q ss_pred             HHHHHhc------------------------------Cc--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy1863         223 YVHALDN------------------------------DA--TCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEV  270 (425)
Q Consensus       223 ~~~al~~------------------------------~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  270 (425)
                      .......                              -|  +.+....+.|.+.++.|+++.|++-|+.+++...-++..
T Consensus       101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpll  180 (459)
T KOG4340|consen  101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLL  180 (459)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchh
Confidence            4443321                              12  345667777888888888888888888888887777777


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy1863         271 LYQIASLYEITGDVEQASDVNENLLLEA  298 (425)
Q Consensus       271 ~~~la~~~~~~g~~~~A~~~~~~~a~~~  298 (425)
                      -++++.++.+.|++..|+.+..+ .++.
T Consensus       181 AYniALaHy~~~qyasALk~iSE-IieR  207 (459)
T KOG4340|consen  181 AYNLALAHYSSRQYASALKHISE-IIER  207 (459)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHH-HHHh
Confidence            78888888888888888877777 5543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.98  E-value=1.4e-06  Score=92.33  Aligned_cols=31  Identities=16%  Similarity=0.056  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q psy1863         356 DLEINKAVTFLRMNDVSQAVDVLKSCDEMTS  386 (425)
Q Consensus       356 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  386 (425)
                      .+...+|.++...|+.++|...+.++.....
T Consensus       732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~la~  762 (903)
T PRK04841        732 RNLILLNQLYWQQGRKSEAQRVLLEALKLAN  762 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence            4566789999999999999999999976553

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.96  E-value=2.1e-07  Score=79.27  Aligned_cols=171  Identities=13%  Similarity=0.155  Sum_probs=138.7

Q ss_pred             chhhHHHHHHHHHHHHcCCHHHHHHHHHhcc------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---H
Q psy1863         132 SLAQDLEINKAVTFLRMNDVSQAVDVLKSCD------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSA---A  202 (425)
Q Consensus       132 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~  202 (425)
                      ....+.+++.|...++.|++++|+..|+.+.      |....+...++.++++.+++++|+...++.+.+.|.++.   +
T Consensus        31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~  110 (254)
T COG4105          31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA  110 (254)
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence            3456677899999999999999999999988      666789999999999999999999999999999988764   5


Q ss_pred             HHHHHHHHHHh--------cCHHHHHHHHHHHHhcCcCcHH-----------------HHHHHHHHHHHcCCHHHHHHHH
Q psy1863         203 FVNLGNCAMAR--------EDYVKGKELYVHALDNDATCIE-----------------ALYNLGLAHKHLNEYSDSLECF  257 (425)
Q Consensus       203 ~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~-----------------~~~~la~~~~~~g~~~~A~~~~  257 (425)
                      ++..|.+++..        .-..+|+..|+..+...|++..                 --..+|..|.+.|.+-.|+.-+
T Consensus       111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~  190 (254)
T COG4105         111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRF  190 (254)
T ss_pred             HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence            77778776643        2356788899999999998621                 1145788999999999999999


Q ss_pred             HHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         258 HKLQAIVPSMP---EVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       258 ~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      +.+++..|+..   .++..+..+|..+|-.++|...-.- ...-.|+++
T Consensus       191 ~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v-l~~N~p~s~  238 (254)
T COG4105         191 EEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKV-LGANYPDSQ  238 (254)
T ss_pred             HHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHH-HHhcCCCCc
Confidence            99999887654   5788888999999999999776554 333345544

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.95  E-value=2.8e-08  Score=92.07  Aligned_cols=120  Identities=23%  Similarity=0.163  Sum_probs=101.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCH
Q psy1863         171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEY  250 (425)
Q Consensus       171 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  250 (425)
                      .+-..+...++++.|+..+++..+.+|+   +...++.++...++-.+|+..+.+++...|.+...+...+..+...+++
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~  250 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY  250 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence            3444555678889999999998888765   5566888888888889999999999988888888888889999999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863         251 SDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNEN  293 (425)
Q Consensus       251 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  293 (425)
                      +.|+.+.++++...|+.-..|+.|+.+|..+|+++.|+..+..
T Consensus       251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence            9999999999999999999999999999999999999877665

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.91  E-value=7.3e-08  Score=89.35  Aligned_cols=120  Identities=17%  Similarity=0.232  Sum_probs=110.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHH
Q psy1863         141 KAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGK  220 (425)
Q Consensus       141 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  220 (425)
                      +-..+...++++.|+.++++.....+.+...++.++...++..+|+..+.+++...|.+...+...+..+...++++.|+
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL  254 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELAL  254 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence            34455667899999999999986667888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863         221 ELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKL  260 (425)
Q Consensus       221 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  260 (425)
                      .+.++++...|+....|+.|+.+|..+|+++.|+..++.+
T Consensus       255 ~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  255 EIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            9999999999999999999999999999999999877643

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG4340|consensus

Probab=98.90  E-value=5.2e-07  Score=77.69  Aligned_cols=207  Identities=14%  Similarity=0.051  Sum_probs=156.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------------------
Q psy1863         138 EINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA-------------------  195 (425)
Q Consensus       138 ~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------------------  195 (425)
                      .-.+|.+|+...+|..|..+|++.-   |.........+..++..+.+.+|+.+.......                   
T Consensus        47 LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~  126 (459)
T KOG4340|consen   47 LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEG  126 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccc
Confidence            3567999999999999999999876   777777777888888888888887765443321                   


Q ss_pred             -----------CC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1863         196 -----------DT--YNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQA  262 (425)
Q Consensus       196 -----------~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  262 (425)
                                 -|  +.+...++.|.+.++.|+++.|++-|+.+++...-++-.-++++.++++.|++..|+++..+.++
T Consensus       127 Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIie  206 (459)
T KOG4340|consen  127 DLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIE  206 (459)
T ss_pred             cCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence                       13  45677899999999999999999999999999888889999999999999999999998877765


Q ss_pred             h----CCC----------------C---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcc-----hH--HHH
Q psy1863         263 I----VPS----------------M---------PEVLYQIASLYEITGDVEQASDVNENLLLEAVRN-----DA--LSQ  306 (425)
Q Consensus       263 ~----~p~----------------~---------~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~-----~~--~~~  306 (425)
                      .    +|.                +         ..+++..+-++.+.|+++.|.+.+..    +-|.     +|  +.+
T Consensus       207 RG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD----mPPRaE~elDPvTLHN  282 (459)
T KOG4340|consen  207 RGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD----MPPRAEEELDPVTLHN  282 (459)
T ss_pred             hhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc----CCCcccccCCchhhhH
Confidence            4    341                1         12455567788999999999876655    3332     22  777


Q ss_pred             HHHh----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHh
Q psy1863         307 LHRE----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNS  348 (425)
Q Consensus       307 l~~~----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (425)
                      ++..    ++-....-+.-.+.++|-..+...++.+.+|.......
T Consensus       283 ~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~l  328 (459)
T KOG4340|consen  283 QALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDL  328 (459)
T ss_pred             HHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhH
Confidence            7766    55566666666777788555555566666776655543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.90  E-value=4.5e-08  Score=74.93  Aligned_cols=92  Identities=17%  Similarity=0.033  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcc------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHH
Q psy1863         137 LEINKAVTFLRMNDVSQAVDVLKSCD------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTY---NSAAFVNLG  207 (425)
Q Consensus       137 ~~~~~a~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la  207 (425)
                      +.++.|..+-..|+.++|+.+|++++      +....++..+|.++...|++++|+..+++++...|+   +......++
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A   82 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA   82 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence            45889999999999999999999999      445679999999999999999999999999999888   778888899


Q ss_pred             HHHHHhcCHHHHHHHHHHHHh
Q psy1863         208 NCAMAREDYVKGKELYVHALD  228 (425)
Q Consensus       208 ~~~~~~g~~~~A~~~~~~al~  228 (425)
                      .++...|++++|+..+-.++.
T Consensus        83 l~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   83 LALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHCCCHHHHHHHHHHHHH
Confidence            999999999999999988775

>KOG1915|consensus

Probab=98.88  E-value=6.5e-05  Score=69.13  Aligned_cols=283  Identities=14%  Similarity=0.086  Sum_probs=183.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHH
Q psy1863         138 EINKAVTFLRMNDVSQAVDVLKSCD--EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS---AAFVNLGNCAMA  212 (425)
Q Consensus       138 ~~~~a~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~  212 (425)
                      +...-..-++.+..+.|..+|++.+  ......|...+..-...|...-|..+|++|++.-.++.   ......|..-..
T Consensus       177 W~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~  256 (677)
T KOG1915|consen  177 WLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEER  256 (677)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            3444555667788999999999988  55566788888888899999999999999998765543   335555666667


Q ss_pred             hcCHHHHHHHHHHHHhcCcCc--HHHHHHHHHHHHHcCC---HHHHHH-----HHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy1863         213 REDYVKGKELYVHALDNDATC--IEALYNLGLAHKHLNE---YSDSLE-----CFHKLQAIVPSMPEVLYQIASLYEITG  282 (425)
Q Consensus       213 ~g~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~---~~~A~~-----~~~~al~~~p~~~~~~~~la~~~~~~g  282 (425)
                      ++.++.|...|+-++..-|.+  ...+......--+-|+   .++++.     -|++.++.+|.+.++|+..-.+-...|
T Consensus       257 qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g  336 (677)
T KOG1915|consen  257 QKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVG  336 (677)
T ss_pred             HHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcC
Confidence            889999999999999988876  3333333333333344   234433     467778889999999999888888889


Q ss_pred             CHHHHHHHHHHHHHhcCcchH----H-------HHHHHh------hHHHHHHHHHHHHhhcCCchhhHhh----------
Q psy1863         283 DVEQASDVNENLLLEAVRNDA----L-------SQLHRE------MKHEAEKCILTSAKLIAPSIEDNFS----------  335 (425)
Q Consensus       283 ~~~~A~~~~~~~a~~~~p~~~----~-------~~l~~~------~~~~A~~~~~~a~~~~~~~~~~~~~----------  335 (425)
                      +.+.-.+.|++ |+...|...    |       .+.+..      +.+.+.+.|+.++++.|..--+...          
T Consensus       337 ~~~~Ire~yEr-AIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feI  415 (677)
T KOG1915|consen  337 DKDRIRETYER-AIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEI  415 (677)
T ss_pred             CHHHHHHHHHH-HHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH
Confidence            99999999999 888777544    2       222222      7788888999999988865321110          


Q ss_pred             -----------ch--------------HH----------HHHHHhH-HhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHH
Q psy1863         336 -----------NG--------------YN----------WCVQSIR-NSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLK  379 (425)
Q Consensus       336 -----------~~--------------~~----------~~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  379 (425)
                                 +|              |.          .|..-.. .....|-+...|...|.+-...|+.+.|..+|+
T Consensus       416 Rq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaife  495 (677)
T KOG1915|consen  416 RQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFE  495 (677)
T ss_pred             HHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence                       00              11          1111000 122333355667777888888888888888888


Q ss_pred             HHHhhccCCccchhHHHHHhhhccCcCCCCcHHHHHHhHhHHh
Q psy1863         380 SCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLTVL  422 (425)
Q Consensus       380 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~  422 (425)
                      -+.+...-....+-+-.++ .-+........+-..++.+|..-
T Consensus       496 lAi~qp~ldmpellwkaYI-dFEi~~~E~ekaR~LYerlL~rt  537 (677)
T KOG1915|consen  496 LAISQPALDMPELLWKAYI-DFEIEEGEFEKARALYERLLDRT  537 (677)
T ss_pred             HHhcCcccccHHHHHHHhh-hhhhhcchHHHHHHHHHHHHHhc
Confidence            8754333222222222222 11222234445555666555543

>KOG4234|consensus

Probab=98.88  E-value=4.6e-08  Score=79.13  Aligned_cols=109  Identities=21%  Similarity=0.209  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863         168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNS-----AAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL  242 (425)
Q Consensus       168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  242 (425)
                      .+-.-|.-++..|+|++|..-|..|+...|..+     ..+.+.|.++++++.++.|+..+.++++++|++..++...|.
T Consensus        97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAe  176 (271)
T KOG4234|consen   97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAE  176 (271)
T ss_pred             HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHH
Confidence            344567777888888888888888888887654     346777888888888888888888888888888888888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy1863         243 AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIAS  276 (425)
Q Consensus       243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  276 (425)
                      +|.++.+|++|++.|++.+..+|....+.-.++.
T Consensus       177 ayek~ek~eealeDyKki~E~dPs~~ear~~i~r  210 (271)
T KOG4234|consen  177 AYEKMEKYEEALEDYKKILESDPSRREAREAIAR  210 (271)
T ss_pred             HHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence            8888888888888888888888866555444443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.86  E-value=1.1e-08  Score=70.75  Aligned_cols=64  Identities=25%  Similarity=0.310  Sum_probs=33.7

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHH
Q psy1863         178 LQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLG  241 (425)
Q Consensus       178 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la  241 (425)
                      ..|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..++
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            4455555555555555555555555555555555555555555555555555555544444433

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.85  E-value=1.1e-08  Score=70.75  Aligned_cols=66  Identities=24%  Similarity=0.282  Sum_probs=45.1

Q ss_pred             HHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy1863         211 MAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIAS  276 (425)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  276 (425)
                      +..|++++|+..|++++..+|++..++..+|.+|...|++++|...+++++..+|+++..+..++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            456777777777777777777777777777777777777777777777777777766655555443

...

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.83  E-value=1.8e-07  Score=72.71  Aligned_cols=65  Identities=18%  Similarity=0.140  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC
Q psy1863         168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYN---SAAFVNLGNCAMAREDYVKGKELYVHALDNDAT  232 (425)
Q Consensus       168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  232 (425)
                      .++.-|...+..|+|++|++.|+......|..   ..+...+|.+|+..|++++|+..+++-++++|+
T Consensus        12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~   79 (142)
T PF13512_consen   12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT   79 (142)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            33344444444444444444444444443322   233444444444444444444444444444443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.82  E-value=2.9e-08  Score=69.68  Aligned_cols=64  Identities=22%  Similarity=0.304  Sum_probs=34.0

Q ss_pred             HHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy1863         208 NCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVL  271 (425)
Q Consensus       208 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  271 (425)
                      .+|+..+++++|+.++++++..+|+++..+...|.++..+|++++|+..++++++..|+++.+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~   66 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR   66 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence            3445555555555555555555555555555555555555555555555555555555444443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.81  E-value=1.4e-07  Score=73.26  Aligned_cols=84  Identities=18%  Similarity=0.250  Sum_probs=73.4

Q ss_pred             chhhHHHHHHHHHHHHcCCHHHHHHHHHhcc------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HH
Q psy1863         132 SLAQDLEINKAVTFLRMNDVSQAVDVLKSCD------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS---AA  202 (425)
Q Consensus       132 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~  202 (425)
                      ......++..|...+..|+|.+|++.|+.+.      +-...+...+|.+|+..|++++|+..+++.++++|.++   .+
T Consensus         7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa   86 (142)
T PF13512_consen    7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA   86 (142)
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence            3445566888999999999999999999988      55678999999999999999999999999999998876   56


Q ss_pred             HHHHHHHHHHhcC
Q psy1863         203 FVNLGNCAMARED  215 (425)
Q Consensus       203 ~~~la~~~~~~g~  215 (425)
                      ++..|.+++.+..
T Consensus        87 ~Y~~gL~~~~~~~   99 (142)
T PF13512_consen   87 YYMRGLSYYEQDE   99 (142)
T ss_pred             HHHHHHHHHHHhh
Confidence            8888888887765

>KOG4234|consensus

Probab=98.80  E-value=6.2e-08  Score=78.41  Aligned_cols=100  Identities=21%  Similarity=0.236  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy1863         203 FVNLGNCAMAREDYVKGKELYVHALDNDATC-----IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASL  277 (425)
Q Consensus       203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  277 (425)
                      +-.-|+-++..|+|++|..-|..++.+.|..     ...|.|.|.+..+++.++.|+..+.++++++|.+..++...+.+
T Consensus        98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea  177 (271)
T KOG4234|consen   98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA  177 (271)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence            4456888999999999999999999999976     34678999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         278 YEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       278 ~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      |.++..+++|+..|.+ .++.+|...
T Consensus       178 yek~ek~eealeDyKk-i~E~dPs~~  202 (271)
T KOG4234|consen  178 YEKMEKYEEALEDYKK-ILESDPSRR  202 (271)
T ss_pred             HHhhhhHHHHHHHHHH-HHHhCcchH
Confidence            9999999999999999 999999866

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.79  E-value=4.1e-08  Score=68.86  Aligned_cols=70  Identities=21%  Similarity=0.215  Sum_probs=64.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHH
Q psy1863         172 LSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLG  241 (425)
Q Consensus       172 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la  241 (425)
                      |..+|...+++++|+.++++++..+|+++..+...|.++..+|++.+|+..++++++..|+++.+....+
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            3578899999999999999999999999999999999999999999999999999999999887765544

>KOG2047|consensus

Probab=98.79  E-value=1.2e-05  Score=76.33  Aligned_cols=251  Identities=12%  Similarity=0.132  Sum_probs=184.1

Q ss_pred             chhhHHHHHHHHHHHHcCCHHHHHHHHHhcc-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------
Q psy1863         132 SLAQDLEINKAVTFLRMNDVSQAVDVLKSCD-------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADT-------  197 (425)
Q Consensus       132 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------  197 (425)
                      .....++...|..|-..|+.+.|..+|+++.       .+.+.+|..-|..-+...+++.|+++.+.|...-.       
T Consensus       384 Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~y  463 (835)
T KOG2047|consen  384 GSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYY  463 (835)
T ss_pred             CChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhh
Confidence            3346788899999999999999999999998       45578999999999999999999999999875421       


Q ss_pred             -----------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-
Q psy1863         198 -----------YNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP-  265 (425)
Q Consensus       198 -----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-  265 (425)
                                 .+..+|..++......|-++.....|++.+.+.--.|..-.|.|..+....-+++|.+.|++.+.+.| 
T Consensus       464 d~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~  543 (835)
T KOG2047|consen  464 DNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKW  543 (835)
T ss_pred             cCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC
Confidence                       12345888888888899999999999999999888899999999999999999999999999999874 


Q ss_pred             -CCHHHHHHHHH---HHHHcCCHHHHHHHHHHHHHhcCcchH----HHHHHHh-----hHHHHHHHHHHHHhhcCCchhh
Q psy1863         266 -SMPEVLYQIAS---LYEITGDVEQASDVNENLLLEAVRNDA----LSQLHRE-----MKHEAEKCILTSAKLIAPSIED  332 (425)
Q Consensus       266 -~~~~~~~~la~---~~~~~g~~~~A~~~~~~~a~~~~p~~~----~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~  332 (425)
                       ...++|...-.   .-+.--..+.|...|++ +++..|...    +...+.+     -...|+..|+++-...+.....
T Consensus       544 p~v~diW~tYLtkfi~rygg~klEraRdLFEq-aL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l  622 (835)
T KOG2047|consen  544 PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQ-ALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRL  622 (835)
T ss_pred             ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHH
Confidence             44455543322   22333578999999999 999988544    3333333     3455667777765544332221


Q ss_pred             HhhchHHHHHH------------HhHHhhchhh----hcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q psy1863         333 NFSNGYNWCVQ------------SIRNSAHSSL----AQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTS  386 (425)
Q Consensus       333 ~~~~~~~~~~~------------~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  386 (425)
                      ..   |+-++.            .+++.+...+    ...+.+.-|..-.+.|..+.|..+|.-..+.-+
T Consensus       623 ~m---yni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~d  689 (835)
T KOG2047|consen  623 DM---YNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICD  689 (835)
T ss_pred             HH---HHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCC
Confidence            11   111111            2223333333    234555678888899999999999988765443

>KOG4648|consensus

Probab=98.76  E-value=4.2e-08  Score=85.82  Aligned_cols=102  Identities=18%  Similarity=0.180  Sum_probs=67.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH
Q psy1863         140 NKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDY  216 (425)
Q Consensus       140 ~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  216 (425)
                      ..|+.|+++|+|++|+.||.+.+   |.++..+.+.+..|+++..|..|..-+..|+.++.....+|...|..-..+|..
T Consensus       102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~  181 (536)
T KOG4648|consen  102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN  181 (536)
T ss_pred             HhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence            45666777777777777776666   666666666677777777777776666666666666666666666666666777


Q ss_pred             HHHHHHHHHHHhcCcCcHHHHHHHH
Q psy1863         217 VKGKELYVHALDNDATCIEALYNLG  241 (425)
Q Consensus       217 ~~A~~~~~~al~~~~~~~~~~~~la  241 (425)
                      .+|.+.++.++.+.|++.+....++
T Consensus       182 ~EAKkD~E~vL~LEP~~~ELkK~~a  206 (536)
T KOG4648|consen  182 MEAKKDCETVLALEPKNIELKKSLA  206 (536)
T ss_pred             HHHHHhHHHHHhhCcccHHHHHHHH
Confidence            7777777777777666554443333

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.76  E-value=3.6e-07  Score=78.62  Aligned_cols=103  Identities=16%  Similarity=0.249  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---HHHHHHHHH
Q psy1863         169 ATNLSFIYFLQGEVEQAEKMAEEACTADTYN---SAAFVNLGNCAMAREDYVKGKELYVHALDNDATC---IEALYNLGL  242 (425)
Q Consensus       169 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~  242 (425)
                      .+..|.-++..|+|..|...|...++..|++   +.+++-||.+++.+|+|++|...|..+.+..|++   +++++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            4556666666666666666666666666554   3556666666666666666666666666655543   455666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy1863         243 AHKHLNEYSDSLECFHKLQAIVPSMPEVL  271 (425)
Q Consensus       243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~  271 (425)
                      +...+|+.++|...|+++++..|+.+.+.
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~  252 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDAAK  252 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence            66666666666666666666666555443

>KOG1941|consensus

Probab=98.75  E-value=9.2e-07  Score=78.18  Aligned_cols=235  Identities=17%  Similarity=0.130  Sum_probs=167.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcc------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CC--CHHHHHHH
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCD------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD----TY--NSAAFVNL  206 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~--~~~~~~~l  206 (425)
                      +..|.-++...++++|+....+.+      .....++-.+..+...+|.|++++.+--..++..    ..  ...++.++
T Consensus        10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnl   89 (518)
T KOG1941|consen   10 IEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNL   89 (518)
T ss_pred             HHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667888899999999999888887      2333455566778888999998887655544432    11  23678999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCcCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHH
Q psy1863         207 GNCAMAREDYVKGKELYVHALDNDATC-----IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMP------EVLYQIA  275 (425)
Q Consensus       207 a~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la  275 (425)
                      +..+....++.+++.+.+..+.+....     ..+...+|.++..++.++++++.|++++++..++.      .++..||
T Consensus        90 ar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lg  169 (518)
T KOG1941|consen   90 ARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLG  169 (518)
T ss_pred             HHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHH
Confidence            999999999999999988888774333     35677899999999999999999999998855432      4788999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCcchH------------HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchH
Q psy1863         276 SLYEITGDVEQASDVNENLLLEAVRNDA------------LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGY  338 (425)
Q Consensus       276 ~~~~~~g~~~~A~~~~~~~a~~~~p~~~------------~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~  338 (425)
                      .++..+.|+++|..+..+ +.++..+..            +..++..     ..-.|.++.+++.++.-.          
T Consensus       170 slf~~l~D~~Kal~f~~k-A~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~----------  238 (518)
T KOG1941|consen  170 SLFAQLKDYEKALFFPCK-AAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ----------  238 (518)
T ss_pred             HHHHHHHhhhHHhhhhHh-HHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH----------
Confidence            999999999999999999 887743221            2222222     344455555555443211          


Q ss_pred             HHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchh
Q psy1863         339 NWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLS  393 (425)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~  393 (425)
                               ....+........+|.+|...|+.+.|..-|+++........+.+.
T Consensus       239 ---------~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmg  284 (518)
T KOG1941|consen  239 ---------HGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMG  284 (518)
T ss_pred             ---------hCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHH
Confidence                     1111122334456899999999999999999998665544444443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.75  E-value=7.2e-07  Score=73.35  Aligned_cols=136  Identities=17%  Similarity=0.031  Sum_probs=110.6

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL  242 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  242 (425)
                      ...+..++..|..|-..|-+.-|.--|.+++.+.|..+.+++.+|..+...|+|+.|.+.|...++++|.+..+..|.|.
T Consensus        62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi  141 (297)
T COG4785          62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI  141 (297)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce
Confidence            34556777888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q psy1863         243 AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAV  299 (425)
Q Consensus       243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~  299 (425)
                      .+.--|+++-|.+.+.+-.+.+|++|.--.-+-. -...-++.+|...+.+-+...+
T Consensus       142 ~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl-~E~k~dP~~A~tnL~qR~~~~d  197 (297)
T COG4785         142 ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL-NEQKLDPKQAKTNLKQRAEKSD  197 (297)
T ss_pred             eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHH-HHhhCCHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999988853222111 1234567777665544144443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.74  E-value=9.7e-06  Score=70.43  Aligned_cols=192  Identities=27%  Similarity=0.296  Sum_probs=161.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcc-----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-H
Q psy1863         136 DLEINKAVTFLRMNDVSQAVDVLKSCD-----EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGN-C  209 (425)
Q Consensus       136 ~~~~~~a~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-~  209 (425)
                      ......+..+...+++..+...+....     +.....+...|..+...+++..++..+..++...+.........+. +
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (291)
T COG0457          60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA  139 (291)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence            344667888889999999998887764     6677888899999999999999999999999988877666666666 8


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCc---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHH
Q psy1863         210 AMAREDYVKGKELYVHALDNDA---TCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS-MPEVLYQIASLYEITGDVE  285 (425)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~  285 (425)
                      +...|+++.|...+.+++...|   .........+..+...++++.|+..+.+++...+. ....+..++.++...++++
T Consensus       140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (291)
T COG0457         140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE  219 (291)
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence            9999999999999999988776   45667777777788999999999999999999998 6899999999999999999


Q ss_pred             HHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCC
Q psy1863         286 QASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAP  328 (425)
Q Consensus       286 ~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~  328 (425)
                      .|...+.. ++...|...  +..++..     ....+...+.+.+...|.
T Consensus       220 ~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         220 EALEYYEK-ALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HHHHHHHH-HHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            99999999 999988732  3333322     578888888888888886

>KOG4648|consensus

Probab=98.73  E-value=3.9e-08  Score=85.98  Aligned_cols=100  Identities=18%  Similarity=0.163  Sum_probs=65.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC
Q psy1863         170 TNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNE  249 (425)
Q Consensus       170 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  249 (425)
                      -..|.-|+.+|.|++|+.+|.+++..+|.++..+.+.+..|+++++|..|...+..++.++.....+|...|.+-..+|+
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~  180 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN  180 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence            34566666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHhhCCCCHH
Q psy1863         250 YSDSLECFHKLQAIVPSMPE  269 (425)
Q Consensus       250 ~~~A~~~~~~al~~~p~~~~  269 (425)
                      ..+|.+.++.++++.|++..
T Consensus       181 ~~EAKkD~E~vL~LEP~~~E  200 (536)
T KOG4648|consen  181 NMEAKKDCETVLALEPKNIE  200 (536)
T ss_pred             HHHHHHhHHHHHhhCcccHH
Confidence            66666666666666665443

>KOG4555|consensus

Probab=98.72  E-value=6.3e-07  Score=67.41  Aligned_cols=93  Identities=14%  Similarity=0.100  Sum_probs=44.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc----HHHHHHHHHHHHHc
Q psy1863         172 LSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC----IEALYNLGLAHKHL  247 (425)
Q Consensus       172 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~  247 (425)
                      -|......|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|+..+++++++....    ..++...|.+|..+
T Consensus        49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~  128 (175)
T KOG4555|consen   49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL  128 (175)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence            34444444555555555555555555555555555555555555555555555555442221    22344444444444


Q ss_pred             CCHHHHHHHHHHHHhhC
Q psy1863         248 NEYSDSLECFHKLQAIV  264 (425)
Q Consensus       248 g~~~~A~~~~~~al~~~  264 (425)
                      |+-+.|...|+.+-++.
T Consensus       129 g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  129 GNDDAARADFEAAAQLG  145 (175)
T ss_pred             CchHHHHHhHHHHHHhC
Confidence            44444444444444443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.71  E-value=3.3e-07  Score=78.79  Aligned_cols=100  Identities=15%  Similarity=0.247  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHH
Q psy1863         203 FVNLGNCAMAREDYVKGKELYVHALDNDATC---IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS---MPEVLYQIAS  276 (425)
Q Consensus       203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~  276 (425)
                      .++.+.-++..|+|.+|...|..-++..|+.   +.+++-||.+++.+|++++|...|..+.+-.|+   -+++++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            7888899999999999999999999999976   789999999999999999999999999999886   4688999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         277 LYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       277 ~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      +...+|+.++|...|++ +++..|+.+
T Consensus       224 ~~~~l~~~d~A~atl~q-v~k~YP~t~  249 (262)
T COG1729         224 SLGRLGNTDEACATLQQ-VIKRYPGTD  249 (262)
T ss_pred             HHHHhcCHHHHHHHHHH-HHHHCCCCH
Confidence            99999999999999999 999999987

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.70  E-value=2.7e-08  Score=70.86  Aligned_cols=61  Identities=28%  Similarity=0.376  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhc---C----cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1863         202 AFVNLGNCAMAREDYVKGKELYVHALDN---D----ATCIEALYNLGLAHKHLNEYSDSLECFHKLQA  262 (425)
Q Consensus       202 ~~~~la~~~~~~g~~~~A~~~~~~al~~---~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  262 (425)
                      ++.++|.+|..+|++++|+.+|++++++   .    |..+.++.++|.++..+|++++|+++++++++
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3444444444444444444444444433   0    11133444444444444444444444444443

...

>KOG3081|consensus

Probab=98.68  E-value=8.3e-06  Score=69.42  Aligned_cols=160  Identities=14%  Similarity=0.119  Sum_probs=131.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hc
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMA----RE  214 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g  214 (425)
                      ..-|.+++..|++++|.+.....  .+.++...--.++.+..+++-|....++..+++.+.  ++..||..+..    .+
T Consensus       112 l~aa~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~la~gge  187 (299)
T KOG3081|consen  112 LLAAIIYMHDGDFDEALKALHLG--ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVKLATGGE  187 (299)
T ss_pred             HHhhHHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHHHhccch
Confidence            44578999999999999998884  444555555678888899999999999998887543  34444444433    35


Q ss_pred             CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHH
Q psy1863         215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASD-VNEN  293 (425)
Q Consensus       215 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~  293 (425)
                      ++.+|.-+|+..-...|.++......+.|+..+|+|++|...++.++..++++++++.++..+-...|...++.. ...+
T Consensus       188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q  267 (299)
T KOG3081|consen  188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ  267 (299)
T ss_pred             hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence            689999999999998888899999999999999999999999999999999999999999999999998766654 5555


Q ss_pred             HHHhcCcchH
Q psy1863         294 LLLEAVRNDA  303 (425)
Q Consensus       294 ~a~~~~p~~~  303 (425)
                       ....+|+++
T Consensus       268 -Lk~~~p~h~  276 (299)
T KOG3081|consen  268 -LKLSHPEHP  276 (299)
T ss_pred             -HHhcCCcch
Confidence             666788888

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.68  E-value=3.3e-05  Score=66.99  Aligned_cols=214  Identities=24%  Similarity=0.263  Sum_probs=171.5

Q ss_pred             cCCHHHHHHHHHhcc---cc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHH
Q psy1863         148 MNDVSQAVDVLKSCD---EM--TSSAATNLSFIYFLQGEVEQAEKMAEEACT--ADTYNSAAFVNLGNCAMAREDYVKGK  220 (425)
Q Consensus       148 ~g~~~~A~~~~~~~~---~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~  220 (425)
                      .+.+..+...+....   +.  ........+..+...+++..+...+...+.  ..+.....+...+..+...+++..++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            455666666666666   22  367888999999999999999999999997  78888899999999999999999999


Q ss_pred             HHHHHHHhcCcCcHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy1863         221 ELYVHALDNDATCIEALYNLGL-AHKHLNEYSDSLECFHKLQAIVP---SMPEVLYQIASLYEITGDVEQASDVNENLLL  296 (425)
Q Consensus       221 ~~~~~al~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~  296 (425)
                      ..+.+++...+.........+. ++...|+++.|...+.+++...|   .........+..+...++++.|+..+.+ ++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~  194 (291)
T COG0457         116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEK-AL  194 (291)
T ss_pred             HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH-HH
Confidence            9999999988877556666666 89999999999999999988776   3556677777778899999999999999 99


Q ss_pred             hcCcc-hH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhc
Q psy1863         297 EAVRN-DA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRM  368 (425)
Q Consensus       297 ~~~p~-~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  368 (425)
                      ...+. ..  +..++..     ++..|...+..++...|..                         .......+..+...
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~  249 (291)
T COG0457         195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDN-------------------------AEALYNLALLLLEL  249 (291)
T ss_pred             hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCccc-------------------------HHHHhhHHHHHHHc
Confidence            99888 34  5555554     5789999999999888871                         12233344445566


Q ss_pred             CCHHHHHHHHHHHHhhccC
Q psy1863         369 NDVSQAVDVLKSCDEMTSS  387 (425)
Q Consensus       369 g~~~~A~~~~~~~~~~~~~  387 (425)
                      |.++.+...+.+..+..+.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         250 GRYEEALEALEKALELDPD  268 (291)
T ss_pred             CCHHHHHHHHHHHHHhCcc
Confidence            6788888888888666554

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.67  E-value=1.2e-07  Score=87.45  Aligned_cols=67  Identities=27%  Similarity=0.299  Sum_probs=49.6

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHhcCHHHHHHHHHHHHhc
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAA---FVNLGNCAMAREDYVKGKELYVHALDN  229 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~  229 (425)
                      |..+.+++++|.+|+..|+|++|+..|+++++++|++..+   |+++|.+|..+|++++|+.++++++++
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            6677777777777777777777777777777777777643   777777777777777777777777775

>KOG3081|consensus

Probab=98.66  E-value=1.4e-05  Score=68.18  Aligned_cols=156  Identities=17%  Similarity=0.104  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH
Q psy1863         167 SAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKH  246 (425)
Q Consensus       167 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  246 (425)
                      .....-|.+|...|++++|++.....     .+.++...-..++.+..+++-|.+..+++.+.+.+  .++..||..+..
T Consensus       109 i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~  181 (299)
T KOG3081|consen  109 IDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVK  181 (299)
T ss_pred             HHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHH
Confidence            34455577889999999999888763     35566666667888899999999999999988644  445556655543


Q ss_pred             ----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh------hHHH
Q psy1863         247 ----LNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE------MKHE  314 (425)
Q Consensus       247 ----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~------~~~~  314 (425)
                          .+++.+|.-+|++.-...|..+......+.|+..+|++++|...++. ++..++++|  +.++..+      +.+-
T Consensus       182 la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~e-aL~kd~~dpetL~Nliv~a~~~Gkd~~~  260 (299)
T KOG3081|consen  182 LATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEE-ALDKDAKDPETLANLIVLALHLGKDAEV  260 (299)
T ss_pred             HhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHH-HHhccCCCHHHHHHHHHHHHHhCCChHH
Confidence                35789999999999888888999999999999999999999999999 999999999  6666555      4455


Q ss_pred             HHHHHHHHHhhcCCch
Q psy1863         315 AEKCILTSAKLIAPSI  330 (425)
Q Consensus       315 A~~~~~~a~~~~~~~~  330 (425)
                      -.++..+.....|...
T Consensus       261 ~~r~l~QLk~~~p~h~  276 (299)
T KOG3081|consen  261 TERNLSQLKLSHPEHP  276 (299)
T ss_pred             HHHHHHHHHhcCCcch
Confidence            5667777766677654

>KOG2796|consensus

Probab=98.66  E-value=3e-06  Score=71.86  Aligned_cols=137  Identities=12%  Similarity=0.087  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----C--cCcHHHHH
Q psy1863         166 SSAATNLSFIYFLQGEVEQAEKMAEEACTAD-TYNSAAFVNLGNCAMAREDYVKGKELYVHALDN----D--ATCIEALY  238 (425)
Q Consensus       166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~--~~~~~~~~  238 (425)
                      ..+.+.+..++...|+|.-+...+.+.++.+ |..+.....+|.+.++-|+.+.|..+|+.+-+.    +  .....+..
T Consensus       177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~  256 (366)
T KOG2796|consen  177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM  256 (366)
T ss_pred             HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence            4566788888999999999999999999988 667888899999999999999999999966543    2  23356778


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         239 NLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       239 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      +.+.+|.-.+++-.|...|.+.+..+|.++.+.++.|.|...+|+...|++..+. +++..|...
T Consensus       257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~-~~~~~P~~~  320 (366)
T KOG2796|consen  257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEA-MVQQDPRHY  320 (366)
T ss_pred             hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHH-HhccCCccc
Confidence            8899999999999999999999999999999999999999999999999999999 999999765

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.64  E-value=7.2e-08  Score=68.58  Aligned_cols=67  Identities=30%  Similarity=0.375  Sum_probs=54.3

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD-------TYNSAAFVNLGNCAMAREDYVKGKELYVHALDN  229 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  229 (425)
                      |..+.++.++|.+|..+|++++|+.+|++++++.       |....++.++|.++..+|++++|++++++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3456788899999999999999999999998662       223466889999999999999999999998875

...

>KOG4555|consensus

Probab=98.62  E-value=2.7e-06  Score=64.05  Aligned_cols=90  Identities=20%  Similarity=0.135  Sum_probs=59.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHh
Q psy1863         141 KAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS----AAFVNLGNCAMAR  213 (425)
Q Consensus       141 ~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~  213 (425)
                      .|..+...|+.+.|++.|.+++   |..+.+|++.+..+..+|+.++|+.-+++++++..+..    .++...|.+|..+
T Consensus        49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~  128 (175)
T KOG4555|consen   49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL  128 (175)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence            4666666667777777776666   66667777777777777777777777777766653332    3456666667777


Q ss_pred             cCHHHHHHHHHHHHhcC
Q psy1863         214 EDYVKGKELYVHALDND  230 (425)
Q Consensus       214 g~~~~A~~~~~~al~~~  230 (425)
                      |+-+.|...|+.+-++.
T Consensus       129 g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  129 GNDDAARADFEAAAQLG  145 (175)
T ss_pred             CchHHHHHhHHHHHHhC
Confidence            77777777666666553

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.62  E-value=2.2e-07  Score=85.72  Aligned_cols=70  Identities=21%  Similarity=0.227  Sum_probs=65.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy1863         195 ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEA---LYNLGLAHKHLNEYSDSLECFHKLQAIV  264 (425)
Q Consensus       195 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~  264 (425)
                      .+|+++.+++++|.+++..|+|++|+..|+++++++|++..+   |+|+|.+|..+|++++|+.+++++++..
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            478999999999999999999999999999999999999854   9999999999999999999999999973

>KOG1586|consensus

Probab=98.58  E-value=1.5e-05  Score=66.51  Aligned_cols=168  Identities=14%  Similarity=0.083  Sum_probs=112.5

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---
Q psy1863         134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSA---  201 (425)
Q Consensus       134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---  201 (425)
                      +.+++..-|+.|-...++..|-..|-++-         .+.+..+...+.+|. .+++++|+.++++++++..+-..   
T Consensus        33 Aadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~  111 (288)
T KOG1586|consen   33 AAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTM  111 (288)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHH
Confidence            34444444555555555555555554443         122334444555554 45889999999988888654432   


Q ss_pred             ---HHHHHHHHHHHh-cCHHHHHHHHHHHHhcCcCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--
Q psy1863         202 ---AFVNLGNCAMAR-EDYVKGKELYVHALDNDATC------IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPE--  269 (425)
Q Consensus       202 ---~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--  269 (425)
                         .+..+|.+|..- .++++|+.+|+++-+.....      -..+...+..-..+++|.+|+..|++.....-+++-  
T Consensus       112 aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLK  191 (288)
T KOG1586|consen  112 AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLK  191 (288)
T ss_pred             HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence               355788888654 88999999999987654322      234555666667889999999999988776555442  


Q ss_pred             -----HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         270 -----VLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       270 -----~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                           -++.-|.|+.-..+.-.+...+++ ..+++|...
T Consensus       192 ys~KdyflkAgLChl~~~D~v~a~~ALek-y~~~dP~F~  229 (288)
T KOG1586|consen  192 YSAKDYFLKAGLCHLCKADEVNAQRALEK-YQELDPAFT  229 (288)
T ss_pred             hHHHHHHHHHHHHhHhcccHHHHHHHHHH-HHhcCCccc
Confidence                 345667788887888888888888 888888766

>KOG3617|consensus

Probab=98.58  E-value=4.1e-05  Score=74.82  Aligned_cols=27  Identities=11%  Similarity=0.042  Sum_probs=22.6

Q ss_pred             cHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy1863         355 QDLEINKAVTFLRMNDVSQAVDVLKSC  381 (425)
Q Consensus       355 ~~~~~~la~~~~~~g~~~~A~~~~~~~  381 (425)
                      ..+.-.+|.+..++|.|..|-+-|.++
T Consensus      1145 ~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1145 KQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHhhh
Confidence            355667999999999999999888877

>KOG1586|consensus

Probab=98.56  E-value=2.8e-05  Score=64.90  Aligned_cols=126  Identities=17%  Similarity=0.188  Sum_probs=68.2

Q ss_pred             CHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCcchH--------HHHHHHh---
Q psy1863         249 EYSDSLECFHKLQAIVPSMP------EVLYQIASLYEIT-GDVEQASDVNENLLLEAVRNDA--------LSQLHRE---  310 (425)
Q Consensus       249 ~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~-g~~~~A~~~~~~~a~~~~p~~~--------~~~l~~~---  310 (425)
                      +.++|+.++++++++..+-.      .-+..+|.+|..- .++++|+.+|++ +-+....+.        +...+..   
T Consensus        88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~-Aae~yk~ees~ssANKC~lKvA~yaa~  166 (288)
T KOG1586|consen   88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQ-AAEYYKGEESVSSANKCLLKVAQYAAQ  166 (288)
T ss_pred             ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHH-HHHHHcchhhhhhHHHHHHHHHHHHHH
Confidence            45555555555554443222      1234566666544 677777777777 665543322        2222222   


Q ss_pred             --hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCC
Q psy1863         311 --MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSA  388 (425)
Q Consensus       311 --~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  388 (425)
                        ++.+|+..|++.....-++.-..      |..            ..-.+..|.|++-..+.-.+...++++..+.|..
T Consensus       167 leqY~~Ai~iyeqva~~s~~n~LLK------ys~------------KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F  228 (288)
T KOG1586|consen  167 LEQYSKAIDIYEQVARSSLDNNLLK------YSA------------KDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF  228 (288)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHH------hHH------------HHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence              66666666666654432222111      111            1233456788888788877778888887777776


Q ss_pred             ccchh
Q psy1863         389 ATNLS  393 (425)
Q Consensus       389 ~~~l~  393 (425)
                      .+.-.
T Consensus       229 ~dsRE  233 (288)
T KOG1586|consen  229 TDSRE  233 (288)
T ss_pred             cccHH
Confidence            65444

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.55  E-value=1.6e-06  Score=69.72  Aligned_cols=86  Identities=17%  Similarity=0.213  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC----
Q psy1863         217 VKGKELYVHALDNDATCIEALYNLGLAHKHLN----------EYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG----  282 (425)
Q Consensus       217 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----  282 (425)
                      +.|.+.++.....+|.+++.+++-|.++..+.          -+++|+.-|++++.++|+..++++++|.+|...+    
T Consensus         8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~   87 (186)
T PF06552_consen    8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP   87 (186)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence            33444444444444444444444444443321          2345556666666666666666666666665543    


Q ss_pred             -------CHHHHHHHHHHHHHhcCcchH
Q psy1863         283 -------DVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       283 -------~~~~A~~~~~~~a~~~~p~~~  303 (425)
                             .+++|..+|++ +...+|++.
T Consensus        88 d~~~A~~~F~kA~~~Fqk-Av~~~P~ne  114 (186)
T PF06552_consen   88 DTAEAEEYFEKATEYFQK-AVDEDPNNE  114 (186)
T ss_dssp             -HHHHHHHHHHHHHHHHH-HHHH-TT-H
T ss_pred             ChHHHHHHHHHHHHHHHH-HHhcCCCcH
Confidence                   25566677777 777777777

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.54  E-value=1.4e-06  Score=69.96  Aligned_cols=94  Identities=21%  Similarity=0.242  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC---
Q psy1863         182 VEQAEKMAEEACTADTYNSAAFVNLGNCAMARED----------YVKGKELYVHALDNDATCIEALYNLGLAHKHLN---  248 (425)
Q Consensus       182 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---  248 (425)
                      |+.|.+.++.....+|.+++.+++.|.++..+.+          +++|+.-|++++.++|+...+++++|.+|...+   
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            6788888888899999999999998888876643          567888888999999999999999999998665   


Q ss_pred             --------CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy1863         249 --------EYSDSLECFHKLQAIVPSMPEVLYQIA  275 (425)
Q Consensus       249 --------~~~~A~~~~~~al~~~p~~~~~~~~la  275 (425)
                              .|++|..+|+++...+|++......|.
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe  121 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE  121 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence                    378899999999999998765544443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.54  E-value=2.5e-05  Score=62.90  Aligned_cols=128  Identities=13%  Similarity=0.151  Sum_probs=97.5

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC--cHHHHHHHH
Q psy1863         165 TSSAATNLSFIYFLQGEVEQAEKMAEEACT-ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDAT--CIEALYNLG  241 (425)
Q Consensus       165 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~la  241 (425)
                      ...-.+.||......|++.+|..+|++++. +..+++..+..+++..+..+++..|...+++..+.+|.  .++....+|
T Consensus        88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a  167 (251)
T COG4700          88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA  167 (251)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence            334566788888888888888888888875 34667777888888888888888888888888887764  466777788


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863         242 LAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNEN  293 (425)
Q Consensus       242 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  293 (425)
                      .++...|++.+|...|+.++...| .+.+....+..+..+|+.++|..-+..
T Consensus       168 R~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~  218 (251)
T COG4700         168 RTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVA  218 (251)
T ss_pred             HHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            888888888888888888888777 455666667777778877776655554

>KOG2053|consensus

Probab=98.54  E-value=2.9e-05  Score=76.54  Aligned_cols=124  Identities=13%  Similarity=0.050  Sum_probs=96.1

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHH
Q psy1863         178 LQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECF  257 (425)
Q Consensus       178 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  257 (425)
                      ..+++.+|.....+.++..|+...+...-|.++.++|+.++|..+++..-...+++..++..+-.+|..+|++++|..+|
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Y  100 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLY  100 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence            45677888888888888888888888888888888888888887777766667777778888888888888888888888


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         258 HKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       258 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      +++...+|+ ......+-.+|.+.++|.+-.+.--+ ..+..|.++
T Consensus       101 e~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~-LyK~~pk~~  144 (932)
T KOG2053|consen  101 ERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQ-LYKNFPKRA  144 (932)
T ss_pred             HHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCccc
Confidence            888888887 77777777778777777665555444 445567777

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.53  E-value=3.2e-05  Score=66.16  Aligned_cols=81  Identities=16%  Similarity=0.238  Sum_probs=66.0

Q ss_pred             CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHH
Q psy1863         199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC---IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPE---VLY  272 (425)
Q Consensus       199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~  272 (425)
                      .+..+++-|...+..|+|++|++.|+.+...+|..   ..+...++.++++.+++++|+...++.++..|.++.   +++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            45678888999999999999999999998888765   567888889999999999999999999998887654   566


Q ss_pred             HHHHHHH
Q psy1863         273 QIASLYE  279 (425)
Q Consensus       273 ~la~~~~  279 (425)
                      ..|.++.
T Consensus       113 lkgLs~~  119 (254)
T COG4105         113 LKGLSYF  119 (254)
T ss_pred             HHHHHHh
Confidence            6666643

>KOG1070|consensus

Probab=98.46  E-value=3.4e-05  Score=79.39  Aligned_cols=189  Identities=17%  Similarity=0.066  Sum_probs=153.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcc--------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy1863         136 DLEINKAVTFLRMNDVSQAVDVLKSCD--------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLG  207 (425)
Q Consensus       136 ~~~~~~a~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  207 (425)
                      -.|+..-...+..++.++|.+..++++        ......|..+-++...-|.-+...+.|++|.+... ...++..|.
T Consensus      1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd-~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD-AYTVHLKLL 1537 (1710)
T ss_pred             hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc-hHHHHHHHH
Confidence            344555556778899999999999998        22334555555555556777788889999987653 345688889


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHH
Q psy1863         208 NCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS--MPEVLYQIASLYEITGDVE  285 (425)
Q Consensus       208 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~  285 (425)
                      .+|...+++++|.++++..++...+...+|..+|..++++++-+.|...+.+|++--|.  +.......|.+-++.|+.+
T Consensus      1538 ~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred             HHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence            99999999999999999999998888999999999999999999999999999999997  6677888899999999999


Q ss_pred             HHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhc
Q psy1863         286 QASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLI  326 (425)
Q Consensus       286 ~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~  326 (425)
                      .+...|+. .+..+|.-.  |.-+...     +.+.+...|++++.+.
T Consensus      1618 RGRtlfEg-ll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1618 RGRTLFEG-LLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred             hhHHHHHH-HHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence            99999999 888888766  6666555     6677888888887764

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.41  E-value=0.00016  Score=58.42  Aligned_cols=130  Identities=17%  Similarity=0.130  Sum_probs=111.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CcCcHHHHHHHHHHHHHcCCH
Q psy1863         172 LSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN-DATCIEALYNLGLAHKHLNEY  250 (425)
Q Consensus       172 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~~  250 (425)
                      ++......=|++....-..+.+...|.. .-.+.||+.....|++.+|...|++++.- ..+++..+..++...+..+++
T Consensus        62 ~~~a~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~  140 (251)
T COG4700          62 LLMALQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF  140 (251)
T ss_pred             HHHHHHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence            4444455556777777777777777744 44678999999999999999999999974 567889999999999999999


Q ss_pred             HHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         251 SDSLECFHKLQAIVPS--MPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       251 ~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      ..|...+++..+.+|.  .++....+|..+...|.+.+|...|+. ++...|+..
T Consensus       141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~-a~~~ypg~~  194 (251)
T COG4700         141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEV-AISYYPGPQ  194 (251)
T ss_pred             HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHH-HHHhCCCHH
Confidence            9999999999999984  678889999999999999999999999 999999877

>KOG2796|consensus

Probab=98.38  E-value=1.2e-05  Score=68.33  Aligned_cols=143  Identities=19%  Similarity=0.260  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcc----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----C--CCCHHHHHH
Q psy1863         136 DLEINKAVTFLRMNDVSQAVDVLKSCD----EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA----D--TYNSAAFVN  205 (425)
Q Consensus       136 ~~~~~~a~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~--p~~~~~~~~  205 (425)
                      .+.+.++.++.-.|.|.-....+.+.+    +..+.....+|.+.++.||.+.|..+|+..-+.    +  ..+..+..+
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n  257 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN  257 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence            344677888889999999999999998    677888999999999999999999999955433    2  344566788


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHH
Q psy1863         206 LGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM---PEVLYQIASLY  278 (425)
Q Consensus       206 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~  278 (425)
                      .+.+|.-.+++.+|...|.+++..+|.++.+.++.|.|..-.|+..+|++..+.++...|..   ....+++..+|
T Consensus       258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy  333 (366)
T KOG2796|consen  258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY  333 (366)
T ss_pred             hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999953   33455555444

>KOG3617|consensus

Probab=98.38  E-value=0.00016  Score=70.87  Aligned_cols=235  Identities=17%  Similarity=0.128  Sum_probs=151.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHH
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVK  218 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  218 (425)
                      ...|......|..++|..+|.+.     .-+-.|-..|...|.+++|.+..+.--++  .--..+++.+.-+...++.+.
T Consensus       804 akvAvLAieLgMlEeA~~lYr~c-----kR~DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~~  876 (1416)
T KOG3617|consen  804 AKVAVLAIELGMLEEALILYRQC-----KRYDLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIEA  876 (1416)
T ss_pred             hHHHHHHHHHhhHHHHHHHHHHH-----HHHHHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHHH
Confidence            44566777888899999988887     33445667788888888888776542222  123568888888888899999


Q ss_pred             HHHHHHHHH----------hcCcC----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------
Q psy1863         219 GKELYVHAL----------DNDAT----------CIEALYNLGLAHKHLNEYSDSLECFHKLQAIV--------------  264 (425)
Q Consensus       219 A~~~~~~al----------~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------  264 (425)
                      |+++|+++-          .-+|.          ++..|.--|......|+.+.|+.+|..+-...              
T Consensus       877 AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~k  956 (1416)
T KOG3617|consen  877 ALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDK  956 (1416)
T ss_pred             HHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchH
Confidence            999988752          22332          24455666777888899999999888875432              


Q ss_pred             -------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------cCcchH----HHHHHHh----hHHHHHHHHHHHH
Q psy1863         265 -------PSMPEVLYQIASLYEITGDVEQASDVNENLLLE------AVRNDA----LSQLHRE----MKHEAEKCILTSA  323 (425)
Q Consensus       265 -------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~------~~p~~~----~~~l~~~----~~~~A~~~~~~a~  323 (425)
                             ..+..+.+.+|..|...|++.+|+.+|.+ |-.      +..+|.    +.+++..    +.-.|..+|++.-
T Consensus       957 Aa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr-AqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g 1035 (1416)
T KOG3617|consen  957 AARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR-AQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG 1035 (1416)
T ss_pred             HHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc
Confidence                   24566889999999999999999998877 543      333333    6666666    6666667776653


Q ss_pred             hhcCCchhhHhhchHH--HHHHHhHH----------hhchh-hhcHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy1863         324 KLIAPSIEDNFSNGYN--WCVQSIRN----------SAHSS-LAQDLEINKAVTFLRMNDVSQAVDVLKSC  381 (425)
Q Consensus       324 ~~~~~~~~~~~~~~~~--~~~~~~~~----------~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~  381 (425)
                      -........++..|..  .+..+...          +.+++ ..+.+...-+..+....+|++|+..+-.+
T Consensus      1036 ~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1036 GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred             hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            2222222223322210  00011111          11111 13455556778888888888888877655

>KOG2471|consensus

Probab=98.38  E-value=2.5e-05  Score=71.95  Aligned_cols=111  Identities=11%  Similarity=-0.002  Sum_probs=93.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc----cc--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD----EM--------TSSAATNLSFIYFLQGEVEQAEKMAEEACTA-------  195 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~----~~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------  195 (425)
                      +...+.++..++..|++.+|.+.+...-    +.        ....|+++|.+++..|.|.-+..+|.+|++.       
T Consensus       240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~  319 (696)
T KOG2471|consen  240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN  319 (696)
T ss_pred             cHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc
Confidence            3445677889999999999999887654    11        3346789999999999999999999999961       


Q ss_pred             --C---------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q psy1863         196 --D---------TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHK  245 (425)
Q Consensus       196 --~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  245 (425)
                        .         .....+.++.|..|...|+.-.|.++|.+++.....+|..|..++.|+.
T Consensus       320 g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi  380 (696)
T KOG2471|consen  320 GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI  380 (696)
T ss_pred             cCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence              1         1234678999999999999999999999999999999999999999885

>KOG4642|consensus

Probab=98.38  E-value=7.7e-07  Score=74.24  Aligned_cols=87  Identities=17%  Similarity=0.217  Sum_probs=46.2

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy1863         207 GNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQ  286 (425)
Q Consensus       207 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  286 (425)
                      |+.++...+|+.|+.+|.+++.++|..+..|.+.+.|++++.+++.+...+.+++++.|+...+++.+|.+......+++
T Consensus        17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e   96 (284)
T KOG4642|consen   17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE   96 (284)
T ss_pred             cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence            34444444555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHH
Q psy1863         287 ASDVNEN  293 (425)
Q Consensus       287 A~~~~~~  293 (425)
                      |+..+++
T Consensus        97 aI~~Lqr  103 (284)
T KOG4642|consen   97 AIKVLQR  103 (284)
T ss_pred             HHHHHHH
Confidence            5555555

>KOG4642|consensus

Probab=98.36  E-value=1.2e-06  Score=73.11  Aligned_cols=93  Identities=15%  Similarity=0.204  Sum_probs=73.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCH
Q psy1863         171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEY  250 (425)
Q Consensus       171 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  250 (425)
                      .-|..++....|..|+.+|.+++.++|..+..+.+.+.|+++..+++.+..-.+++++++|+.....+.+|.+......|
T Consensus        15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~   94 (284)
T KOG4642|consen   15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY   94 (284)
T ss_pred             hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence            34556666677788888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHhh
Q psy1863         251 SDSLECFHKLQAI  263 (425)
Q Consensus       251 ~~A~~~~~~al~~  263 (425)
                      ++|+..+.++..+
T Consensus        95 ~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   95 DEAIKVLQRAYSL  107 (284)
T ss_pred             cHHHHHHHHHHHH
Confidence            8888888887554

>KOG1070|consensus

Probab=98.27  E-value=0.00016  Score=74.76  Aligned_cols=176  Identities=12%  Similarity=0.098  Sum_probs=148.3

Q ss_pred             HHHHhcCCcchhhHHHHHHH--HHHHHcCCHHHHHHHHHhcc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy1863         123 QSIRNSAHSSLAQDLEINKA--VTFLRMNDVSQAVDVLKSCD--EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTY  198 (425)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~a--~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  198 (425)
                      ++++.-.+......+.+..|  +....-|.-+.-.+.|+++.  -+...++..|..+|...+.+++|.++++..++....
T Consensus      1483 rAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q 1562 (1710)
T KOG1070|consen 1483 RALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ 1562 (1710)
T ss_pred             HHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc
Confidence            34444444443433333333  33334466667777888887  455678889999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy1863         199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDAT--CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIAS  276 (425)
Q Consensus       199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  276 (425)
                      ...+|..+|..++++.+-+.|...+.+|++.-|.  +.......|.+-++.|+.+.+...|+-.+...|...+.|.-...
T Consensus      1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence            9999999999999999999999999999999887  78888899999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcC
Q psy1863         277 LYEITGDVEQASDVNENLLLEAV  299 (425)
Q Consensus       277 ~~~~~g~~~~A~~~~~~~a~~~~  299 (425)
                      .-...|+.+.+...|++ ++.+.
T Consensus      1643 ~eik~~~~~~vR~lfeR-vi~l~ 1664 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFER-VIELK 1664 (1710)
T ss_pred             HHHccCCHHHHHHHHHH-HHhcC
Confidence            99999999999999999 87664

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.21  E-value=4.5e-05  Score=68.58  Aligned_cols=135  Identities=13%  Similarity=0.117  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH
Q psy1863         168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMA-REDYVKGKELYVHALDNDATCIEALYNLGLAHKH  246 (425)
Q Consensus       168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  246 (425)
                      +|..+.....+.+..+.|..+|.+|.+..+.+..+|...|.+-+. .++.+.|.++|+.+++..|.+...|......+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            556666666666678888888888876666677778888887666 4555558888888888888888888888888888


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         247 LNEYSDSLECFHKLQAIVPSMP---EVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       247 ~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      .|+.+.|...|++++..-|...   .+|......-...|+.+....+.++ +.+..|++.
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R-~~~~~~~~~  141 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKR-AEELFPEDN  141 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHH-HHHHTTTS-
T ss_pred             hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHhhhhh
Confidence            8888888888888887766443   4677777777777888888888888 777777654

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1585|consensus

Probab=98.21  E-value=0.00037  Score=58.84  Aligned_cols=165  Identities=16%  Similarity=0.083  Sum_probs=122.7

Q ss_pred             hhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CC
Q psy1863         133 LAQDLEINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD-----TY  198 (425)
Q Consensus       133 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~  198 (425)
                      -+..++..-+..+...++|++|..++.++.         -.-+.++-..|.+......+.++..+++++....     |+
T Consensus        29 gaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd  108 (308)
T KOG1585|consen   29 GAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD  108 (308)
T ss_pred             hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc
Confidence            345566677788888899999999999987         1224556677777888889999999999998764     55


Q ss_pred             CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCC
Q psy1863         199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC------IEALYNLGLAHKHLNEYSDSLECFHKLQAI------VPS  266 (425)
Q Consensus       199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~  266 (425)
                      ....-...+.-.....+.++|+.+|++++.+....      ...+...+.++.+..++++|-..+.+-...      .|+
T Consensus       109 tAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~  188 (308)
T KOG1585|consen  109 TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNS  188 (308)
T ss_pred             hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhccc
Confidence            55555566666677889999999999998774322      345667788889999999998887765433      233


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy1863         267 MPEVLYQIASLYEITGDVEQASDVNENLLLEA  298 (425)
Q Consensus       267 ~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~  298 (425)
                      ....+.....+|....++..|..+++. ..+.
T Consensus       189 ~~k~~va~ilv~L~~~Dyv~aekc~r~-~~qi  219 (308)
T KOG1585|consen  189 QCKAYVAAILVYLYAHDYVQAEKCYRD-CSQI  219 (308)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHhcc-hhcC
Confidence            344566666777777899999999988 6654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.18  E-value=4.7e-06  Score=51.59  Aligned_cols=40  Identities=25%  Similarity=0.287  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy1863         168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLG  207 (425)
Q Consensus       168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  207 (425)
                      ++..+|..|...|++++|+..|+++++.+|+++.++..+|
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            4445555555555555555555555555555555555444

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.17  E-value=5e-06  Score=51.45  Aligned_cols=40  Identities=23%  Similarity=0.287  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy1863         236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIA  275 (425)
Q Consensus       236 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  275 (425)
                      ++..+|.+|..+|++++|+..|+++++.+|+++.++..+|
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            3444555555555555555555555555555555544444

>KOG2053|consensus

Probab=98.15  E-value=0.0018  Score=64.39  Aligned_cols=215  Identities=13%  Similarity=0.069  Sum_probs=147.1

Q ss_pred             hhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHH
Q psy1863         111 EDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEK  187 (425)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~  187 (425)
                      .++|..++..|...++..+....+.   ...|.++.++|+.++|..+++..-   +.+...+..+-.+|..+|++++|..
T Consensus        22 ~~qfkkal~~~~kllkk~Pn~~~a~---vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   22 SSQFKKALAKLGKLLKKHPNALYAK---VLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             hHHHHHHHHHHHHHHHHCCCcHHHH---HHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence            3577888888888888766655332   456889999999999997777665   6677788889999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH-HcCCHH---------HHHHHH
Q psy1863         188 MAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHK-HLNEYS---------DSLECF  257 (425)
Q Consensus       188 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~g~~~---------~A~~~~  257 (425)
                      +|++++..+|+ ......+-.+|.+-+.|.+-.+.--+..+..|.++........+.+ .....+         -|...+
T Consensus        99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~  177 (932)
T KOG2053|consen   99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV  177 (932)
T ss_pred             HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence            99999999998 8888888888999888888777777777788887655444444443 333322         344556


Q ss_pred             HHHHhhC-CCCHHH-HHHHHHHHHHcCCHHHHHHHHHH-HHHhcCcchH-HHH-----HHHh-hHHHHHHHHHHHHhhcC
Q psy1863         258 HKLQAIV-PSMPEV-LYQIASLYEITGDVEQASDVNEN-LLLEAVRNDA-LSQ-----LHRE-MKHEAEKCILTSAKLIA  327 (425)
Q Consensus       258 ~~al~~~-p~~~~~-~~~la~~~~~~g~~~~A~~~~~~-~a~~~~p~~~-~~~-----l~~~-~~~~A~~~~~~a~~~~~  327 (425)
                      ++.+... +-...+ ....-.++..+|++++|..++.. .+-...+.+. +.+     +..+ ++.+-.+...+++...+
T Consensus       178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~  257 (932)
T KOG2053|consen  178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN  257 (932)
T ss_pred             HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence            6666555 221111 12223455677889999988833 1223333333 211     1222 77888888888888887


Q ss_pred             Cc
Q psy1863         328 PS  329 (425)
Q Consensus       328 ~~  329 (425)
                      ++
T Consensus       258 Dd  259 (932)
T KOG2053|consen  258 DD  259 (932)
T ss_pred             cc
Confidence            76

>KOG0545|consensus

Probab=98.13  E-value=3.4e-05  Score=64.84  Aligned_cols=103  Identities=17%  Similarity=0.226  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCH----------HHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q psy1863         167 SAATNLSFIYFLQGEVEQAEKMAEEACTA--------DTYNS----------AAFVNLGNCAMAREDYVKGKELYVHALD  228 (425)
Q Consensus       167 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~----------~~~~~la~~~~~~g~~~~A~~~~~~al~  228 (425)
                      .++..-|+-++..|+|.+|...|..|+..        .|..+          ..+.|.+.|+...|+|-++++....++.
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~  258 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR  258 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence            45666777777777877777777776532        24332          3466777777777777777777777777


Q ss_pred             cCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy1863         229 NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPE  269 (425)
Q Consensus       229 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  269 (425)
                      .+|.+..+++..|.+....-+..+|...|.++++++|.-..
T Consensus       259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence            77777777777777777777777777777777777775443

>KOG0376|consensus

Probab=98.13  E-value=4.1e-06  Score=77.27  Aligned_cols=107  Identities=20%  Similarity=0.198  Sum_probs=81.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCH
Q psy1863         171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEY  250 (425)
Q Consensus       171 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  250 (425)
                      .-+...+.-++|+.|+..|.++++++|+++..+.+.+..+.+.+++..|+.-+.++++.+|....+|+..|.++...+.+
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~   88 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF   88 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence            34555666677777777777888887777777777777777777788888777788877777777777777777777778


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy1863         251 SDSLECFHKLQAIVPSMPEVLYQIASL  277 (425)
Q Consensus       251 ~~A~~~~~~al~~~p~~~~~~~~la~~  277 (425)
                      .+|...|++.....|+.+.+...+-.|
T Consensus        89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec  115 (476)
T KOG0376|consen   89 KKALLDLEKVKKLAPNDPDATRKIDEC  115 (476)
T ss_pred             HHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence            888888877777777777776666655

>KOG2610|consensus

Probab=98.12  E-value=0.00084  Score=59.38  Aligned_cols=152  Identities=11%  Similarity=-0.080  Sum_probs=85.2

Q ss_pred             HHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHHHhc
Q psy1863         142 AVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA-DTYN---SAAFVNLGNCAMARE  214 (425)
Q Consensus       142 a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~g  214 (425)
                      +.+....|++.+|....++.+   |.+.-++..--.+++.+|+...-...+++.+-. +|+.   ..+.-.++-.+...|
T Consensus       110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g  189 (491)
T KOG2610|consen  110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG  189 (491)
T ss_pred             HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence            334445555555555555555   555555555556666666666666666666554 4333   233444555556666


Q ss_pred             CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHH
Q psy1863         215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS----MPEVLYQIASLYEITGDVEQASDV  290 (425)
Q Consensus       215 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~  290 (425)
                      -|++|.+..+++++++|.+..+....+.++...|++.++.+...+.-..-..    ...-|...+.++..-+.++.|++.
T Consensus       190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI  269 (491)
T KOG2610|consen  190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI  269 (491)
T ss_pred             cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence            6666666666666666666666666666666666666666665543222111    112244455556666666666666


Q ss_pred             HHH
Q psy1863         291 NEN  293 (425)
Q Consensus       291 ~~~  293 (425)
                      |..
T Consensus       270 yD~  272 (491)
T KOG2610|consen  270 YDR  272 (491)
T ss_pred             HHH
Confidence            655

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.10  E-value=0.00033  Score=65.30  Aligned_cols=162  Identities=13%  Similarity=0.117  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc----------------
Q psy1863         168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDA----------------  231 (425)
Q Consensus       168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----------------  231 (425)
                      .-..+-.-..+..+.+.-++...+|++++|+.+.++..|+.-  ...-..+|..+|+++++...                
T Consensus       170 ~Aq~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~  247 (539)
T PF04184_consen  170 PAQEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFW  247 (539)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchh
Confidence            334555566778889999999999999999999999887752  22335677777777765410                


Q ss_pred             -------C--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-C
Q psy1863         232 -------T--CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS--MPEVLYQIASLYEITGDVEQASDVNENLLLEA-V  299 (425)
Q Consensus       232 -------~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~-~  299 (425)
                             .  ...+...+|.|..++|+.++|++.++..++..|.  +..++.+|..++..++.+.++...+.+ --+. .
T Consensus       248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k-YdDi~l  326 (539)
T PF04184_consen  248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK-YDDISL  326 (539)
T ss_pred             hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH-hccccC
Confidence                   0  0335578999999999999999999999998875  456899999999999999999999888 6543 2


Q ss_pred             cchH-HH-HHHHh---------------------hHHHHHHHHHHHHhhcCCchhh
Q psy1863         300 RNDA-LS-QLHRE---------------------MKHEAEKCILTSAKLIAPSIED  332 (425)
Q Consensus       300 p~~~-~~-~l~~~---------------------~~~~A~~~~~~a~~~~~~~~~~  332 (425)
                      |... +. .-+.+                     ....|.+.+.++++.+|..+..
T Consensus       327 pkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y  382 (539)
T PF04184_consen  327 PKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY  382 (539)
T ss_pred             CchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence            4444 11 11111                     1234678899999999887653

The molecular function of this protein is uncertain.

>KOG0545|consensus

Probab=98.09  E-value=4.3e-05  Score=64.27  Aligned_cols=102  Identities=10%  Similarity=0.029  Sum_probs=90.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc-----------cch----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD-----------EMT----------SSAATNLSFIYFLQGEVEQAEKMAEEAC  193 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~-----------~~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al  193 (425)
                      ..+.-..|+-++..|+|.+|...|..++           |..          ...+.++..|++..|+|-++++.....+
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            4455678999999999999999999987           332          3456789999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHH
Q psy1863         194 TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEA  236 (425)
Q Consensus       194 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  236 (425)
                      ..+|.+..+++..|.+....=+.++|...|.++++++|.-..+
T Consensus       258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence            9999999999999999999999999999999999999976443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.09  E-value=3.4e-06  Score=48.70  Aligned_cols=30  Identities=20%  Similarity=0.258  Sum_probs=12.5

Q ss_pred             HHHHhcCcCcHHHHHHHHHHHHHcCCHHHH
Q psy1863         224 VHALDNDATCIEALYNLGLAHKHLNEYSDS  253 (425)
Q Consensus       224 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A  253 (425)
                      +++++++|+++.+|+++|.+|...|++++|
T Consensus         3 ~kAie~~P~n~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen    3 KKAIELNPNNAEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence            344444444444444444444444444433

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.09  E-value=0.00014  Score=65.34  Aligned_cols=131  Identities=10%  Similarity=0.095  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy1863         138 EINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFL-QGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAR  213 (425)
Q Consensus       138 ~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  213 (425)
                      |+.......+.+..+.|..+|.++.   +....+|...|.+.+. .++.+.|...|+.+++..|.+...|......+...
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~   83 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL   83 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            3455556666667999999999999   4567889999999666 67777799999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCcCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy1863         214 EDYVKGKELYVHALDNDATCI---EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMP  268 (425)
Q Consensus       214 g~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  268 (425)
                      |+.+.|..+|++++..-|...   .+|......-...|+.+......+++.+..|...
T Consensus        84 ~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~  141 (280)
T PF05843_consen   84 NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN  141 (280)
T ss_dssp             T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred             CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence            999999999999998876654   6888888888899999999999999999988743

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG0376|consensus

Probab=98.05  E-value=8.8e-06  Score=75.10  Aligned_cols=121  Identities=18%  Similarity=0.178  Sum_probs=104.5

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy1863         204 VNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGD  283 (425)
Q Consensus       204 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  283 (425)
                      -+-+...+.-++|+.|+..|.++++++|+++..+.+.+.++.+.+++..|+..+.++++.+|....+|+..|.+...++.
T Consensus         8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~   87 (476)
T KOG0376|consen    8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE   87 (476)
T ss_pred             hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence            34567778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCcchH--HHHHHHhhHHHHHHHHHHHHhh
Q psy1863         284 VEQASDVNENLLLEAVRNDA--LSQLHREMKHEAEKCILTSAKL  325 (425)
Q Consensus       284 ~~~A~~~~~~~a~~~~p~~~--~~~l~~~~~~~A~~~~~~a~~~  325 (425)
                      +.+|...|+. ...+.|+++  ...+..++.--...-|+.++-.
T Consensus        88 ~~~A~~~l~~-~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~  130 (476)
T KOG0376|consen   88 FKKALLDLEK-VKKLAPNDPDATRKIDECNKIVSEEKFEKAILT  130 (476)
T ss_pred             HHHHHHHHHH-hhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccC
Confidence            9999999999 999999999  4444444444444445555443

>KOG1585|consensus

Probab=98.03  E-value=0.0032  Score=53.31  Aligned_cols=153  Identities=13%  Similarity=0.145  Sum_probs=101.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhcc--------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHH
Q psy1863         140 NKAVTFLRMNDVSQAVDVLKSCD--------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN------SAAFVN  205 (425)
Q Consensus       140 ~~a~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~  205 (425)
                      ..|...-....+.++..+|+++.        |+.+..-...+--.....++++|+.+|++++.+-...      .+.+..
T Consensus        76 qaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk  155 (308)
T KOG1585|consen   76 QAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK  155 (308)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            33444455556666666666665        4443333334444556778999999999988764322      244667


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhc------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCHHHHHHHH
Q psy1863         206 LGNCAMAREDYVKGKELYVHALDN------DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV----PSMPEVLYQIA  275 (425)
Q Consensus       206 la~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la  275 (425)
                      .++++.+..++++|-..+.+-...      .|+....+.....+|....+|..|..+++..-++.    |++..+..+|-
T Consensus       156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL  235 (308)
T KOG1585|consen  156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL  235 (308)
T ss_pred             hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence            788899999999998887765433      34445556666677777889999999999876653    34566666766


Q ss_pred             HHHHHcCCHHHHHHHHHH
Q psy1863         276 SLYEITGDVEQASDVNEN  293 (425)
Q Consensus       276 ~~~~~~g~~~~A~~~~~~  293 (425)
                      ..| ..|+.++....+..
T Consensus       236 ~ay-d~gD~E~~~kvl~s  252 (308)
T KOG1585|consen  236 TAY-DEGDIEEIKKVLSS  252 (308)
T ss_pred             HHh-ccCCHHHHHHHHcC
Confidence            654 45788877666655

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.01  E-value=5.9e-06  Score=47.70  Aligned_cols=33  Identities=24%  Similarity=0.327  Sum_probs=30.9

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHH
Q psy1863         188 MAEEACTADTYNSAAFVNLGNCAMAREDYVKGK  220 (425)
Q Consensus       188 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  220 (425)
                      +|+++++++|+++.+|+++|.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            378999999999999999999999999999986

>KOG2471|consensus

Probab=97.93  E-value=7e-05  Score=69.10  Aligned_cols=141  Identities=21%  Similarity=0.227  Sum_probs=111.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCC--------CHHHHHHHH
Q psy1863         140 NKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEA-CTADTY--------NSAAFVNLG  207 (425)
Q Consensus       140 ~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~~~~~la  207 (425)
                      -....++...+...+..-.+.++   .+.+.+....+..++..|++.+|.+.+... +...|.        .-..|+++|
T Consensus       211 ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlG  290 (696)
T KOG2471|consen  211 YKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLG  290 (696)
T ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcc
Confidence            33445566666666665555555   677888889999999999999999887653 222233        223478999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhc---------Cc---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy1863         208 NCAMAREDYVKGKELYVHALDN---------DA---------TCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPE  269 (425)
Q Consensus       208 ~~~~~~g~~~~A~~~~~~al~~---------~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  269 (425)
                      .++++.|.|.-+..+|.++++.         .|         ....+.+|.|..|...|+.-.|.+||.++......+|.
T Consensus       291 cIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPr  370 (696)
T KOG2471|consen  291 CIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPR  370 (696)
T ss_pred             eEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcH
Confidence            9999999999999999999962         11         22568899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1863         270 VLYQIASLYEI  280 (425)
Q Consensus       270 ~~~~la~~~~~  280 (425)
                      .|..++.|+..
T Consensus       371 lWLRlAEcCim  381 (696)
T KOG2471|consen  371 LWLRLAECCIM  381 (696)
T ss_pred             HHHHHHHHHHH
Confidence            99999998754

>KOG2610|consensus

Probab=97.91  E-value=0.00041  Score=61.28  Aligned_cols=121  Identities=10%  Similarity=-0.007  Sum_probs=73.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CcCc---HHHHHHHHHHHHHcC
Q psy1863         173 SFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN-DATC---IEALYNLGLAHKHLN  248 (425)
Q Consensus       173 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~---~~~~~~la~~~~~~g  248 (425)
                      +.+.+..|++.+|....++.++..|.+.-++..--..++-.|+.+.-...+++.+-. +|+.   ..+.-.++..+...|
T Consensus       110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g  189 (491)
T KOG2610|consen  110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG  189 (491)
T ss_pred             HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence            344455566666666666666666666666555555666666666666666666654 3333   333444555566666


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863         249 EYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNEN  293 (425)
Q Consensus       249 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  293 (425)
                      -|++|.+.-+++++++|.+.-+...++.++...|++.++.++..+
T Consensus       190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK  234 (491)
T ss_pred             cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence            666666666666666666666666666666666666666666655

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.90  E-value=0.018  Score=52.36  Aligned_cols=244  Identities=13%  Similarity=-0.021  Sum_probs=154.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcc--cchH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy1863         137 LEINKAVTFLRMNDVSQAVDVLKSCD--EMTS-SAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAR  213 (425)
Q Consensus       137 ~~~~~a~~~~~~g~~~~A~~~~~~~~--~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  213 (425)
                      +.+.-+..-+-.|+++.|.+-|+.++  |..- -.+..|-.-....|+.+.|..+.+.+....|.-+.++...-......
T Consensus       122 IhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~  201 (531)
T COG3898         122 IHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAA  201 (531)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhc
Confidence            44556778888899999999999887  3221 12222333345689999999999999999999988888877788889


Q ss_pred             cCHHHHHHHHHHHHhc---CcCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q psy1863         214 EDYVKGKELYVHALDN---DATC-----IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVE  285 (425)
Q Consensus       214 g~~~~A~~~~~~al~~---~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  285 (425)
                      |+|+.|+++.......   .++-     ...+...+.... .-+...|...-.+++++.|+...+-..-+..+...|+..
T Consensus       202 gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~r  280 (531)
T COG3898         202 GDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLR  280 (531)
T ss_pred             CChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchh
Confidence            9999999998776653   2221     112222222222 345778888889999999999988888899999999999


Q ss_pred             HHHHHHHHHHHhcCcchH-HHHHHHh----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhH------Hhhchhh-
Q psy1863         286 QASDVNENLLLEAVRNDA-LSQLHRE----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIR------NSAHSSL-  353 (425)
Q Consensus       286 ~A~~~~~~~a~~~~p~~~-~~~l~~~----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-  353 (425)
                      ++-..++. +-+..|.-. +..+-..    ....-.+-..+...+.|++.+..+...-..+.-+..      ..+.... 
T Consensus       281 Kg~~ilE~-aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~  359 (531)
T COG3898         281 KGSKILET-AWKAEPHPDIALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA  359 (531)
T ss_pred             hhhhHHHH-HHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence            99999999 988888755 3333333    111112223334445566655544432111111110      0111111 


Q ss_pred             -hcHHHHHHHHHHHhc-CCHHHHHHHHHHHH
Q psy1863         354 -AQDLEINKAVTFLRM-NDVSQAVDVLKSCD  382 (425)
Q Consensus       354 -~~~~~~~la~~~~~~-g~~~~A~~~~~~~~  382 (425)
                       ...++..++.+-... |+-.++..++-++.
T Consensus       360 pres~~lLlAdIeeAetGDqg~vR~wlAqav  390 (531)
T COG3898         360 PRESAYLLLADIEEAETGDQGKVRQWLAQAV  390 (531)
T ss_pred             chhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence             123445556655544 77777777776663

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.88  E-value=2.9e-05  Score=44.92  Aligned_cols=30  Identities=37%  Similarity=0.660  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy1863         236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVP  265 (425)
Q Consensus       236 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p  265 (425)
                      +|+++|.++..+|++++|+.+|+++++++|
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            344444444444444444444444444444

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.88  E-value=2.7e-05  Score=45.11  Aligned_cols=31  Identities=32%  Similarity=0.322  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy1863         168 AATNLSFIYFLQGEVEQAEKMAEEACTADTY  198 (425)
Q Consensus       168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  198 (425)
                      +|+++|.++..+|++++|+..|+++++++|+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            4445555555555555555555555554443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.85  E-value=0.0012  Score=63.95  Aligned_cols=104  Identities=15%  Similarity=0.186  Sum_probs=53.9

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc----HHHHHHHHHHHHHcCCHHHHHHH
Q psy1863         181 EVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC----IEALYNLGLAHKHLNEYSDSLEC  256 (425)
Q Consensus       181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~  256 (425)
                      +.+.|.+.+.......|+..-..+..|.++...|+.++|+..|++++...+.-    .-.++.+|.++..+++|++|..+
T Consensus       248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~  327 (468)
T PF10300_consen  248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY  327 (468)
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence            44555555555555556555555555555555666666666665555322211    22344555555555566666555


Q ss_pred             HHHHHhhCCCC-HHHHHHHHHHHHHcCCH
Q psy1863         257 FHKLQAIVPSM-PEVLYQIASLYEITGDV  284 (425)
Q Consensus       257 ~~~al~~~p~~-~~~~~~la~~~~~~g~~  284 (425)
                      |.+..+.+.-. ....+..|.|+...|+.
T Consensus       328 f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~  356 (468)
T PF10300_consen  328 FLRLLKESKWSKAFYAYLAAACLLMLGRE  356 (468)
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence            55555543321 12233445555555555

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.85  E-value=0.013  Score=54.06  Aligned_cols=167  Identities=16%  Similarity=0.113  Sum_probs=115.6

Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH---hcCHHHHHHHHHHHH-hcCcCcHH
Q psy1863         164 MTSSAATNLSFIYFLQGEVEQAEKMAEEACTA----DTYNSAAFVNLGNCAMA---REDYVKGKELYVHAL-DNDATCIE  235 (425)
Q Consensus       164 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al-~~~~~~~~  235 (425)
                      ..+++..++=.+|....+|+.-+++.+..-.+    -+..+.+...+|.++.+   .|+.++|+..+..++ ...+.+++
T Consensus       139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d  218 (374)
T PF13281_consen  139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD  218 (374)
T ss_pred             cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence            34566677778899999999998888877666    45667778888888888   899999999999854 45667788


Q ss_pred             HHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--------
Q psy1863         236 ALYNLGLAHKHL---------NEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEA--------  298 (425)
Q Consensus       236 ~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~--------  298 (425)
                      ++..+|.+|...         ...++|+..|.++.+.+| +...-.|++.++...|...+...-.+++.+.+        
T Consensus       219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg  297 (374)
T PF13281_consen  219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG  297 (374)
T ss_pred             HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence            999999888532         357899999999999986 34444566666666665433332233312111        


Q ss_pred             --CcchH---HHHHHHh-----hHHHHHHHHHHHHhhcCCchh
Q psy1863         299 --VRNDA---LSQLHRE-----MKHEAEKCILTSAKLIAPSIE  331 (425)
Q Consensus       299 --~p~~~---~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~  331 (425)
                        .+...   ...+..+     ++++|.+.++++++..|+...
T Consensus       298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~  340 (374)
T PF13281_consen  298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE  340 (374)
T ss_pred             cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence              11111   2222222     999999999999988776543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.85  E-value=4.5e-05  Score=44.07  Aligned_cols=32  Identities=28%  Similarity=0.255  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy1863         167 SAATNLSFIYFLQGEVEQAEKMAEEACTADTY  198 (425)
Q Consensus       167 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  198 (425)
                      .+++.+|.+++..|++++|+.+|+++++++|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            34555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.84  E-value=5.3e-05  Score=43.78  Aligned_cols=31  Identities=35%  Similarity=0.598  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy1863         236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVPS  266 (425)
Q Consensus       236 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  266 (425)
                      +++.+|.++..+|++++|+.+|+++++++|+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            4444444444444444444444444444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG0551|consensus

Probab=97.83  E-value=0.00014  Score=63.98  Aligned_cols=100  Identities=12%  Similarity=0.093  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHH
Q psy1863         166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN----SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLG  241 (425)
Q Consensus       166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la  241 (425)
                      +.-+-.-|+-|+...+|..|+..|.++++..-.+    ...|.|.+.+....|+|..|+.-+.+++..+|++..+++.-|
T Consensus        81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A  160 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA  160 (390)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence            3445566888888888889999998888775333    345788888888889999999999999999999988988889


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCC
Q psy1863         242 LAHKHLNEYSDSLECFHKLQAIVP  265 (425)
Q Consensus       242 ~~~~~~g~~~~A~~~~~~al~~~p  265 (425)
                      .|++.+.++.+|..+++..+.++.
T Consensus       161 kc~~eLe~~~~a~nw~ee~~~~d~  184 (390)
T KOG0551|consen  161 KCLLELERFAEAVNWCEEGLQIDD  184 (390)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhH
Confidence            999999998888888888876653

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.82  E-value=0.0026  Score=58.54  Aligned_cols=170  Identities=14%  Similarity=0.128  Sum_probs=124.5

Q ss_pred             chhhHHHHHHHHHHHHcCCHHHHHHHHHhcc-------cchHHHHHHHHHHHHH---cCCHHHHHHHHHHHH-hcCCCCH
Q psy1863         132 SLAQDLEINKAVTFLRMNDVSQAVDVLKSCD-------EMTSSAATNLSFIYFL---QGEVEQAEKMAEEAC-TADTYNS  200 (425)
Q Consensus       132 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al-~~~p~~~  200 (425)
                      .+..++.+++-.+|....+|+.=+.+.+..-       +..+.+.+.+|.++.+   .|+.++|+..+..++ ...+.++
T Consensus       138 ~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~  217 (374)
T PF13281_consen  138 LLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP  217 (374)
T ss_pred             hcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence            3456667777788999999999888887765       4567788899999999   999999999999944 5567788


Q ss_pred             HHHHHHHHHHHH---------hcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hh-------
Q psy1863         201 AAFVNLGNCAMA---------REDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQ-AI-------  263 (425)
Q Consensus       201 ~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~-------  263 (425)
                      +++..+|.+|-.         ....++|+..|.++.+.+|+. ..-.|++.++...|.-.+......+.. .+       
T Consensus       218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~k  296 (374)
T PF13281_consen  218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRK  296 (374)
T ss_pred             HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhh
Confidence            999999998754         234789999999999999654 344566667776665433332222221 11       


Q ss_pred             C---C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         264 V---P-SMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       264 ~---p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      .   + .+.-.+..++.+....|++++|++.+++ +..+.|...
T Consensus       297 g~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~-~~~l~~~~W  339 (374)
T PF13281_consen  297 GSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEK-AFKLKPPAW  339 (374)
T ss_pred             ccccccccHHHHHHHHHHHHHcCCHHHHHHHHHH-HhhcCCcch
Confidence            1   1 1223445667777889999999999999 998877655

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.80  E-value=0.014  Score=53.02  Aligned_cols=246  Identities=12%  Similarity=0.001  Sum_probs=161.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcc-----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHH
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCD-----EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSA-AFVNLGNCAMA  212 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~  212 (425)
                      +..|.+..-.|+-..|.+.-.+.-     ...+-++..-+..-...|+++.|.+-|+..+. +|..-. -+..|-.-...
T Consensus        88 LStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr  166 (531)
T COG3898          88 LSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQR  166 (531)
T ss_pred             HhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHh
Confidence            445677777788888887766654     34456666777888888999999998887663 333221 12333333456


Q ss_pred             hcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CC---HHHHHHHHHHHHH-cCCHH
Q psy1863         213 REDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP---SM---PEVLYQIASLYEI-TGDVE  285 (425)
Q Consensus       213 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~---~~~~~~la~~~~~-~g~~~  285 (425)
                      .|..+-|+.+-+.+....|.-+.++...-...+..|+++.|++..+......-   +.   ..+-..-+..... .-+..
T Consensus       167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~  246 (531)
T COG3898         167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPA  246 (531)
T ss_pred             cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChH
Confidence            78899999999999999998888888877788888999999998877655432   21   1222222332222 35677


Q ss_pred             HHHHHHHHHHHhcCcchH----HHHHHHh---hHHHHHHHHHHHHhhcCCchhhHhhc----h---HHHHHHHhHHhhch
Q psy1863         286 QASDVNENLLLEAVRNDA----LSQLHRE---MKHEAEKCILTSAKLIAPSIEDNFSN----G---YNWCVQSIRNSAHS  351 (425)
Q Consensus       286 ~A~~~~~~~a~~~~p~~~----~~~l~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~  351 (425)
                      .|...-.+ +.++.|+..    ...-...   +..++-..++.+.+..|...-.....    |   ...+....+-....
T Consensus       247 ~Ar~~A~~-a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~slk  325 (531)
T COG3898         247 SARDDALE-ANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLESLK  325 (531)
T ss_pred             HHHHHHHH-HhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHHhcC
Confidence            88888888 888888876    1111111   77888888888888887543211110    0   11222222234555


Q ss_pred             hhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q psy1863         352 SLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTS  386 (425)
Q Consensus       352 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  386 (425)
                      +.+.+..+..+..-+..|+|..|..--+.+....|
T Consensus       326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p  360 (531)
T COG3898         326 PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP  360 (531)
T ss_pred             ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc
Confidence            55667777888888899999999887777644443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=0.0022  Score=56.14  Aligned_cols=156  Identities=16%  Similarity=0.069  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHH
Q psy1863         136 DLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAF-VNLGNCAM  211 (425)
Q Consensus       136 ~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~~~~  211 (425)
                      +.-+..+......|++.+|...|..++   +.+..+...++.+|...|+.+.|...+...-.........- ......+.
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~  214 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE  214 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence            334555667777777777777777777   66777777778888888877777766655322221111110 01111222


Q ss_pred             HhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHH
Q psy1863         212 AREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP--SMPEVLYQIASLYEITGDVEQASD  289 (425)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~  289 (425)
                      +.....+. ..+++.+..+|++..+.+.+|..+...|+.++|.+.+-..++.+.  .+..+.-.+-.++...|.-+.+..
T Consensus       215 qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~  293 (304)
T COG3118         215 QAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVL  293 (304)
T ss_pred             HHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHH
Confidence            22222221 234555666777777777788888888888888777777776654  244556666666666664433333


Q ss_pred             HHH
Q psy1863         290 VNE  292 (425)
Q Consensus       290 ~~~  292 (425)
                      .++
T Consensus       294 ~~R  296 (304)
T COG3118         294 AYR  296 (304)
T ss_pred             HHH
Confidence            333

>KOG0551|consensus

Probab=97.73  E-value=0.00049  Score=60.70  Aligned_cols=101  Identities=16%  Similarity=0.121  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy1863         202 AFVNLGNCAMAREDYVKGKELYVHALDNDAT----CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASL  277 (425)
Q Consensus       202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  277 (425)
                      -+-.-|+-|++.++|..|+..|.++|+..-.    ++..|.|.+.+....|+|..|+..+.+++..+|.+..+++.=+.|
T Consensus        83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc  162 (390)
T KOG0551|consen   83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC  162 (390)
T ss_pred             HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence            3555789999999999999999999987433    366789999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         278 YEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       278 ~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      +..+..+..|..+.+. .+.++.+..
T Consensus       163 ~~eLe~~~~a~nw~ee-~~~~d~e~K  187 (390)
T KOG0551|consen  163 LLELERFAEAVNWCEE-GLQIDDEAK  187 (390)
T ss_pred             HHHHHHHHHHHHHHhh-hhhhhHHHH
Confidence            9999999999999888 776654433

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.71  E-value=0.0018  Score=52.06  Aligned_cols=111  Identities=20%  Similarity=0.175  Sum_probs=70.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHH-HHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHH
Q psy1863         173 SFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYV-KGKELYVHALDNDATCIEALYNLGLAHKHLNEYS  251 (425)
Q Consensus       173 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  251 (425)
                      |......|+.+.++..+++++.+.....-.-...       ..|- .....++..      ...+...++..+...|+++
T Consensus        13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~~~~   79 (146)
T PF03704_consen   13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-------EEWVEPERERLREL------YLDALERLAEALLEAGDYE   79 (146)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-------STTHHHHHHHHHHH------HHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-------cHHHHHHHHHHHHH------HHHHHHHHHHHHHhccCHH
Confidence            4445566777777777777776653221100000       1111 111122221      2446677888888999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy1863         252 DSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLE  297 (425)
Q Consensus       252 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~  297 (425)
                      +|+..+.+++..+|.+..++..+..+|...|+...|+..|++ ...
T Consensus        80 ~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~-~~~  124 (146)
T PF03704_consen   80 EALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYER-YRR  124 (146)
T ss_dssp             HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH-HHH
Confidence            999999999999999999999999999999999999999988 543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1550|consensus

Probab=97.70  E-value=0.018  Score=57.21  Aligned_cols=145  Identities=21%  Similarity=0.236  Sum_probs=117.1

Q ss_pred             HHHHHHHHHhcc-cchHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhc-----
Q psy1863         151 VSQAVDVLKSCD-EMTSSAATNLSFIYFLQ-----GEVEQAEKMAEEACTA-----DTYNSAAFVNLGNCAMARE-----  214 (425)
Q Consensus       151 ~~~A~~~~~~~~-~~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-----  214 (425)
                      ...|..+++.+. ..+..+...+|.+|..-     .|.+.|+.+++.+.+.     .-..+.+.+.+|.+|.+..     
T Consensus       228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~  307 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKI  307 (552)
T ss_pred             hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccc
Confidence            567888888877 77888889999998764     6899999999999771     1225567888999998853     


Q ss_pred             CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CCHHHH
Q psy1863         215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLN---EYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT----GDVEQA  287 (425)
Q Consensus       215 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A  287 (425)
                      ++..|+.+|.++-...  ++.+.+.+|.++..-.   ++..|..+|..|...  .+..+.+.++.||..-    -+...|
T Consensus       308 d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A  383 (552)
T KOG1550|consen  308 DYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELA  383 (552)
T ss_pred             cHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHH
Confidence            7788999999998874  5778889999988765   678999999998765  4788999999998753    478999


Q ss_pred             HHHHHHHHHhcCc
Q psy1863         288 SDVNENLLLEAVR  300 (425)
Q Consensus       288 ~~~~~~~a~~~~p  300 (425)
                      ..++.+ +.+..+
T Consensus       384 ~~~~k~-aA~~g~  395 (552)
T KOG1550|consen  384 FAYYKK-AAEKGN  395 (552)
T ss_pred             HHHHHH-HHHccC
Confidence            999999 888773

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.67  E-value=0.0022  Score=51.61  Aligned_cols=106  Identities=19%  Similarity=0.173  Sum_probs=70.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcc--------cchHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCD--------EMTSS-AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNC  209 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~--------~~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  209 (425)
                      ...|......|+.+.++..+.+++        +..+. .|.            ......++..      ...+...++..
T Consensus        10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~------------~~~r~~l~~~------~~~~~~~l~~~   71 (146)
T PF03704_consen   10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWV------------EPERERLREL------YLDALERLAEA   71 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTH------------HHHHHHHHHH------HHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHH------------HHHHHHHHHH------HHHHHHHHHHH
Confidence            344666778889999999999987        22111 111            1111222221      22456667777


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1863         210 AMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQA  262 (425)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  262 (425)
                      +...|++++|+..+++++..+|.+..++..+..+|...|+..+|+..|++..+
T Consensus        72 ~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   72 LLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888877644

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.62  E-value=0.0076  Score=49.45  Aligned_cols=117  Identities=17%  Similarity=0.139  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHhcCCCCHH---HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---HHHHHHHHHHHHHcCCHHHHHHHH
Q psy1863         184 QAEKMAEEACTADTYNSA---AFVNLGNCAMAREDYVKGKELYVHALDNDATC---IEALYNLGLAHKHLNEYSDSLECF  257 (425)
Q Consensus       184 ~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~  257 (425)
                      +.....++....+|.+..   +...++..+...|++++|+..++.++....+.   .-+-.++|.+...+|.+++|+..+
T Consensus        70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L  149 (207)
T COG2976          70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL  149 (207)
T ss_pred             hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            444555555556655543   35667888888899999999888888653332   345678888888999999888887


Q ss_pred             HHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         258 HKLQAIVPS-MPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       258 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      .....  ++ .+......|.++...|+.++|+..|.+ +++.+++.+
T Consensus       150 ~t~~~--~~w~~~~~elrGDill~kg~k~~Ar~ay~k-Al~~~~s~~  193 (207)
T COG2976         150 DTIKE--ESWAAIVAELRGDILLAKGDKQEARAAYEK-ALESDASPA  193 (207)
T ss_pred             hcccc--ccHHHHHHHHhhhHHHHcCchHHHHHHHHH-HHHccCChH
Confidence            64321  11 223455678888999999999999999 888876555

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.60  E-value=0.0085  Score=56.27  Aligned_cols=158  Identities=18%  Similarity=0.125  Sum_probs=113.3

Q ss_pred             HHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----------------------
Q psy1863         143 VTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADT----------------------  197 (425)
Q Consensus       143 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----------------------  197 (425)
                      ...-+..+...-++.-++++   |+-+.++..|+.-.  ..-..+|..+|+++++...                      
T Consensus       176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~R  253 (539)
T PF04184_consen  176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRR  253 (539)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhcc
Confidence            34456677888888888888   67777777776532  2235667777777665420                      


Q ss_pred             -C--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHH
Q psy1863         198 -Y--NSAAFVNLGNCAMAREDYVKGKELYVHALDNDAT--CIEALYNLGLAHKHLNEYSDSLECFHKLQAI-VPSMPEVL  271 (425)
Q Consensus       198 -~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~  271 (425)
                       .  ...+...+|.|..++|+.++|++.++..++.+|.  +..+..++..++..++.|.++...+.+.-.+ .|......
T Consensus       254 dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~  333 (539)
T PF04184_consen  254 DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATIC  333 (539)
T ss_pred             ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHH
Confidence             0  1234678999999999999999999999988775  4678999999999999999999999886433 35556655


Q ss_pred             HHHHHHHHH-cCC---------------HHHHHHHHHHHHHhcCcchH
Q psy1863         272 YQIASLYEI-TGD---------------VEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       272 ~~la~~~~~-~g~---------------~~~A~~~~~~~a~~~~p~~~  303 (425)
                      +.-+.+-.+ .++               -..|++.+.+ |++.+|.-+
T Consensus       334 YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~R-AvefNPHVp  380 (539)
T PF04184_consen  334 YTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHR-AVEFNPHVP  380 (539)
T ss_pred             HHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHH-HHHhCCCCc
Confidence            655554322 222               1346788999 999999877

The molecular function of this protein is uncertain.

>KOG3616|consensus

Probab=97.58  E-value=0.051  Score=53.41  Aligned_cols=139  Identities=15%  Similarity=0.115  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcC
Q psy1863         137 LEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN-SAAFVNLGNCAMARED  215 (425)
Q Consensus       137 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~  215 (425)
                      .+-..+..|...|+|+.|.++|.++-     ....-...|-+.|++.+|.++-++..  .|.. ...|...+.-.-..|+
T Consensus       767 yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgk  839 (1636)
T KOG3616|consen  767 YYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGK  839 (1636)
T ss_pred             cchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcc
Confidence            34466778889999999999998873     22233456778899999988877764  3333 3446666667777788


Q ss_pred             HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863         216 YVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS-MPEVLYQIASLYEITGDVEQASDVNEN  293 (425)
Q Consensus       216 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~  293 (425)
                      |.+|..+|-..-  .|+.+      ...|-+.|.+++-+....+   .+|+ -.+.+..+|.-+...|+...|...|-+
T Consensus       840 f~eaeqlyiti~--~p~~a------iqmydk~~~~ddmirlv~k---~h~d~l~dt~~~f~~e~e~~g~lkaae~~fle  907 (1636)
T KOG3616|consen  840 FAEAEQLYITIG--EPDKA------IQMYDKHGLDDDMIRLVEK---HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLE  907 (1636)
T ss_pred             hhhhhheeEEcc--CchHH------HHHHHhhCcchHHHHHHHH---hChhhhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence            877766553211  12211      1223344444444444332   2232 234555666666666666666665555

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.56  E-value=0.0047  Score=54.10  Aligned_cols=142  Identities=16%  Similarity=0.092  Sum_probs=103.6

Q ss_pred             HHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc-HH
Q psy1863         157 VLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC-IE  235 (425)
Q Consensus       157 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~  235 (425)
                      .+.+.++.....-..-+.-....|++.+|...|..++...|.+..+...++.++...|+.+.|...+...-...... ..
T Consensus       125 ~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~  204 (304)
T COG3118         125 FLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAH  204 (304)
T ss_pred             HHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHH
Confidence            33444455555566777788899999999999999999999999999999999999999999988877643322221 11


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCc
Q psy1863         236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVR  300 (425)
Q Consensus       236 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p  300 (425)
                      .....-..+.+.....+ ...+++.+..+|++..+-+.++..+...|+.+.|.+.+-. .++.+.
T Consensus       205 ~l~a~i~ll~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~-~l~~d~  267 (304)
T COG3118         205 GLQAQIELLEQAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLA-LLRRDR  267 (304)
T ss_pred             HHHHHHHHHHHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhcc
Confidence            11111122222222222 2345566778999999999999999999999999999888 766643

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.56  E-value=0.056  Score=48.63  Aligned_cols=23  Identities=13%  Similarity=0.224  Sum_probs=19.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHH
Q psy1863         359 INKAVTFLRMNDVSQAVDVLKSC  381 (425)
Q Consensus       359 ~~la~~~~~~g~~~~A~~~~~~~  381 (425)
                      .+.|...++.++|+.|+++|+-+
T Consensus       250 W~~~~~~~~~k~y~~A~~w~~~a  272 (278)
T PF08631_consen  250 WNKGKKHYKAKNYDEAIEWYELA  272 (278)
T ss_pred             HHHHHHHHhhcCHHHHHHHHHHH
Confidence            34688888999999999999865

It is also involved in sporulation [].

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.52  E-value=0.081  Score=49.41  Aligned_cols=165  Identities=13%  Similarity=0.012  Sum_probs=94.7

Q ss_pred             hhhHHHHHHHHHHHHcCCHHHHHHHHHhcc-cc------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HH
Q psy1863         133 LAQDLEINKAVTFLRMNDVSQAVDVLKSCD-EM------TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS---AA  202 (425)
Q Consensus       133 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~-~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~  202 (425)
                      .....++..+....+.|.++.|...+.++. ..      .+.+....+.+....|+..+|+..++..+.......   ..
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~  223 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS  223 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence            345566777888888888888887777776 11      567777778888888888888888777776211110   00


Q ss_pred             HHHHHHHHHH--hcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy1863         203 FVNLGNCAMA--REDYVKGKELYVHALDNDATCIEALYNLGLAHKHL------NEYSDSLECFHKLQAIVPSMPEVLYQI  274 (425)
Q Consensus       203 ~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l  274 (425)
                      ...+......  ...........     .....+.++..+|......      +..++++..|.++++..|....+|+.+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~  298 (352)
T PF02259_consen  224 NAELKSGLLESLEVISSTNLDKE-----SKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSW  298 (352)
T ss_pred             HHHHhhccccccccccccchhhh-----hHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHH
Confidence            0000000000  00000000000     0001144556666666666      777777777777777777777777777


Q ss_pred             HHHHHHcC-----------------CHHHHHHHHHHHHHhcCcchH
Q psy1863         275 ASLYEITG-----------------DVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       275 a~~~~~~g-----------------~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      |..+...-                 -...|+..|-+ ++...+...
T Consensus       299 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~-al~~~~~~~  343 (352)
T PF02259_consen  299 ALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLK-ALSLGSKYV  343 (352)
T ss_pred             HHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHH-HHhhCCCch
Confidence            76654431                 11347788888 888877744

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.48  E-value=0.0017  Score=62.80  Aligned_cols=115  Identities=17%  Similarity=0.143  Sum_probs=93.3

Q ss_pred             cCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCHHHHH
Q psy1863         148 MNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN----SAAFVNLGNCAMAREDYVKGK  220 (425)
Q Consensus       148 ~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~  220 (425)
                      ..+.+.|.+++....   |+.+-..+..|.++...|+.++|+..|++++.....-    .-.++.+|.++..+++|++|.
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~  325 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA  325 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence            456778888888877   9999999999999999999999999999988543222    345889999999999999999


Q ss_pred             HHHHHHHhcCcC-cHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHh
Q psy1863         221 ELYVHALDNDAT-CIEALYNLGLAHKHLNEY-------SDSLECFHKLQA  262 (425)
Q Consensus       221 ~~~~~al~~~~~-~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~  262 (425)
                      .+|.+..+.+.- .....+..|.|+...|+.       ++|.+.|.++-.
T Consensus       326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            999999987554 345567788999999998       666666665543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.47  E-value=0.015  Score=47.78  Aligned_cols=95  Identities=8%  Similarity=-0.013  Sum_probs=52.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH
Q psy1863         170 TNLSFIYFLQGEVEQAEKMAEEACTADTYN---SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKH  246 (425)
Q Consensus       170 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  246 (425)
                      ..++..+...|++++|+..++.++....+.   .-+-.+++.+...+|.+++|+..+.....-. -.+......|.++..
T Consensus        93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~  171 (207)
T COG2976          93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLA  171 (207)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHH
Confidence            345555566666666666666665433221   1234566666666666666666555432110 012233455666666


Q ss_pred             cCCHHHHHHHHHHHHhhCC
Q psy1863         247 LNEYSDSLECFHKLQAIVP  265 (425)
Q Consensus       247 ~g~~~~A~~~~~~al~~~p  265 (425)
                      .|+-++|+..|++++...+
T Consensus       172 kg~k~~Ar~ay~kAl~~~~  190 (207)
T COG2976         172 KGDKQEARAAYEKALESDA  190 (207)
T ss_pred             cCchHHHHHHHHHHHHccC
Confidence            6666666666666666653

>KOG1308|consensus

Probab=97.46  E-value=0.00012  Score=64.77  Aligned_cols=93  Identities=9%  Similarity=0.025  Sum_probs=77.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHH
Q psy1863         173 SFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSD  252 (425)
Q Consensus       173 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~  252 (425)
                      +.-.+..|.+++|++.|..++.++|.....+...+.++..+++...|+..|..++.++|+....|-..|.+...+|++++
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~  200 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE  200 (377)
T ss_pred             HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence            34445678888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHhhCC
Q psy1863         253 SLECFHKLQAIVP  265 (425)
Q Consensus       253 A~~~~~~al~~~p  265 (425)
                      |...+..+.+++-
T Consensus       201 aa~dl~~a~kld~  213 (377)
T KOG1308|consen  201 AAHDLALACKLDY  213 (377)
T ss_pred             HHHHHHHHHhccc
Confidence            8888888887763

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.40  E-value=0.029  Score=51.00  Aligned_cols=139  Identities=19%  Similarity=0.173  Sum_probs=100.4

Q ss_pred             HHHHHHHHHc----CCHHHHHHHHHhcc-cchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCC-HHHHHHHHH
Q psy1863         139 INKAVTFLRM----NDVSQAVDVLKSCD-EMTSSAATNLSFIYFL----QGEVEQAEKMAEEACTADTYN-SAAFVNLGN  208 (425)
Q Consensus       139 ~~~a~~~~~~----g~~~~A~~~~~~~~-~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~-~~~~~~la~  208 (425)
                      ..++..+...    .+..+|..+|..+. ...+.+.+.||.+|..    ..++.+|..+|+++.+..... ..+...+|.
T Consensus        77 ~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~  156 (292)
T COG0790          77 ALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGL  156 (292)
T ss_pred             HHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence            4455555443    36788888888776 7777888889988887    448889999999988775433 344777777


Q ss_pred             HHHHhc-------CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy1863         209 CAMARE-------DYVKGKELYVHALDNDATCIEALYNLGLAHKH----LNEYSDSLECFHKLQAIVPSMPEVLYQIASL  277 (425)
Q Consensus       209 ~~~~~g-------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  277 (425)
                      .|..-+       +...|...|.++-...  ++.+..++|.+|..    ..++.+|..+|.++-+...  ..+.+.++ +
T Consensus       157 ~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~  231 (292)
T COG0790         157 AYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-L  231 (292)
T ss_pred             HHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-H
Confidence            776642       2336888888887765  67788888877755    3478899999988887765  77788888 6


Q ss_pred             HHHcC
Q psy1863         278 YEITG  282 (425)
Q Consensus       278 ~~~~g  282 (425)
                      +...|
T Consensus       232 ~~~~g  236 (292)
T COG0790         232 MYLNG  236 (292)
T ss_pred             HHhcC
Confidence            66555

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.35  E-value=0.00039  Score=40.07  Aligned_cols=30  Identities=33%  Similarity=0.295  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy1863         168 AATNLSFIYFLQGEVEQAEKMAEEACTADT  197 (425)
Q Consensus       168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  197 (425)
                      +|+.+|.+|...|++++|+.+|+++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            445555555555555555555555555544

...

>KOG1914|consensus

Probab=97.32  E-value=0.16  Score=48.35  Aligned_cols=302  Identities=11%  Similarity=0.036  Sum_probs=168.7

Q ss_pred             HHHHHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhc-ccchhHH
Q psy1863           8 FERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAV-RNDALSQ   86 (425)
Q Consensus         8 ~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~d~l~~   86 (425)
                      +...|+.|+.++..=.+.-....|..|+..+++-..+-+-|.+.. + ..+.... ..-..+.....|+=.+ ..+.|+.
T Consensus       178 Y~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~-~-~vp~~~T-~~e~~qv~~W~n~I~wEksNpL~t  254 (656)
T KOG1914|consen  178 YEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNA-P-AVPPKGT-KDEIQQVELWKNWIKWEKSNPLRT  254 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccC-C-CCCCCCC-hHHHHHHHHHHHHHHHHhcCCccc
Confidence            345788999999999999999999999999888665554333210 0 0111111 0001111100000000 0112221


Q ss_pred             ----HHHHHHHHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q psy1863          87 ----LHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD  162 (425)
Q Consensus        87 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~  162 (425)
                          ....+..-+-...+..    -+..+.-|..+..++.+          .++++..+|..-.....-+++..+|++++
T Consensus       255 ~~~~~~~~Rv~yayeQ~ll~----l~~~peiWy~~s~yl~~----------~s~l~~~~~d~~~a~~~t~e~~~~yEr~I  320 (656)
T KOG1914|consen  255 LDGTMLTRRVMYAYEQCLLY----LGYHPEIWYDYSMYLIE----------ISDLLTEKGDVPDAKSLTDEAASIYERAI  320 (656)
T ss_pred             ccccHHHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHH----------hhHHHHHhcccccchhhHHHHHHHHHHHH
Confidence                1111111111111110    01111222223322222          12233333333333334678888888887


Q ss_pred             ----cchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcH
Q psy1863         163 ----EMTSSAATNLSFIYFLQG---EVEQAEKMAEEACTADTYNS-AAFVNLGNCAMAREDYVKGKELYVHALDNDATCI  234 (425)
Q Consensus       163 ----~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  234 (425)
                          ..+...++.++..-...-   .++.....+.+++.....++ -++..+-+.-.+..-...|...|.++-+..-...
T Consensus       321 ~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~h  400 (656)
T KOG1914|consen  321 EGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRH  400 (656)
T ss_pred             HHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcc
Confidence                334444555554433322   36677778888887654333 3456666666667778889999999887643332


Q ss_pred             HHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CcchH---HHHHH
Q psy1863         235 EALYNLGL-AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEA--VRNDA---LSQLH  308 (425)
Q Consensus       235 ~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~--~p~~~---~~~l~  308 (425)
                      .++..-|. -|...++..-|...|+-.++..++.+.........+..+++-..|...|++ ++..  .|+-.   |..+-
T Consensus       401 hVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr-~l~s~l~~~ks~~Iw~r~l  479 (656)
T KOG1914|consen  401 HVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFER-VLTSVLSADKSKEIWDRML  479 (656)
T ss_pred             hhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHH-HHhccCChhhhHHHHHHHH
Confidence            33333332 245688999999999999999999999888888999999999999999999 8876  33332   44443


Q ss_pred             Hh-----hHHHHHHHHHHHHhhcC
Q psy1863         309 RE-----MKHEAEKCILTSAKLIA  327 (425)
Q Consensus       309 ~~-----~~~~A~~~~~~a~~~~~  327 (425)
                      ..     +.....+.-++-....|
T Consensus       480 ~yES~vGdL~si~~lekR~~~af~  503 (656)
T KOG1914|consen  480 EYESNVGDLNSILKLEKRRFTAFP  503 (656)
T ss_pred             HHHHhcccHHHHHHHHHHHHHhcc
Confidence            33     55555555555555555

>KOG1308|consensus

Probab=97.32  E-value=9.4e-05  Score=65.44  Aligned_cols=94  Identities=12%  Similarity=0.044  Sum_probs=86.4

Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy1863         209 CAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQAS  288 (425)
Q Consensus       209 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  288 (425)
                      -.+..|.++.|++.|..++.++|.....+...+.++.++++...|+..|..++.++|+...-|-..|.....+|++++|.
T Consensus       123 eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa  202 (377)
T KOG1308|consen  123 EALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA  202 (377)
T ss_pred             HHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcchH
Q psy1863         289 DVNENLLLEAVRNDA  303 (425)
Q Consensus       289 ~~~~~~a~~~~p~~~  303 (425)
                      ..+.. +.+++-+..
T Consensus       203 ~dl~~-a~kld~dE~  216 (377)
T KOG1308|consen  203 HDLAL-ACKLDYDEA  216 (377)
T ss_pred             HHHHH-HHhccccHH
Confidence            99999 988764433

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.30  E-value=0.00053  Score=39.46  Aligned_cols=29  Identities=38%  Similarity=0.707  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy1863         237 LYNLGLAHKHLNEYSDSLECFHKLQAIVP  265 (425)
Q Consensus       237 ~~~la~~~~~~g~~~~A~~~~~~al~~~p  265 (425)
                      |+.+|.+|..+|++++|+.+|+++++++|
T Consensus         4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    4 YYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            33444444444444444444444444433

...

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=97.14  E-value=0.052  Score=50.60  Aligned_cols=154  Identities=17%  Similarity=0.095  Sum_probs=107.9

Q ss_pred             cCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------C------------CCCH-
Q psy1863         148 MNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA--------------D------------TYNS-  200 (425)
Q Consensus       148 ~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------~------------p~~~-  200 (425)
                      .+|.+.=+.++++. |-+.+++..++.++..+|+.+.|.++.++|+-.              +            +.|- 
T Consensus        23 ~~Dp~~l~~ll~~~-PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~  101 (360)
T PF04910_consen   23 SHDPNALINLLQKN-PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQ  101 (360)
T ss_pred             ccCHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchH
Confidence            34555444454443 777777777777777777777777777776522              1            2222 


Q ss_pred             --HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC-cHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CCHHHH
Q psy1863         201 --AAFVNLGNCAMAREDYVKGKELYVHALDNDAT-CIEAL-YNLGLAHKHLNEYSDSLECFHKLQAIVP-----SMPEVL  271 (425)
Q Consensus       201 --~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~  271 (425)
                        .+.+.......+.|-+.-|.++++-.+.++|. ++... ..+-....+.++++--+..++.......     .-|...
T Consensus       102 fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a  181 (360)
T PF04910_consen  102 FFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFA  181 (360)
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHH
Confidence              34566677788899999999999999999998 66544 4444455677888877887776655211     234677


Q ss_pred             HHHHHHHHHcCCH---------------HHHHHHHHHHHHhcCcchH
Q psy1863         272 YQIASLYEITGDV---------------EQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       272 ~~la~~~~~~g~~---------------~~A~~~~~~~a~~~~p~~~  303 (425)
                      +.++.++...++.               +.|...+.+ |+...|.-.
T Consensus       182 ~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~-Ai~~fP~vl  227 (360)
T PF04910_consen  182 FSIALAYFRLEKEESSQSSAQSGRSENSESADEALQK-AILRFPWVL  227 (360)
T ss_pred             HHHHHHHHHhcCccccccccccccccchhHHHHHHHH-HHHHhHHHH
Confidence            8888888888888               899999999 998888755

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG1258|consensus

Probab=97.10  E-value=0.14  Score=49.43  Aligned_cols=190  Identities=8%  Similarity=0.048  Sum_probs=143.4

Q ss_pred             HHHHcCCHHHHHHHHHhcc-----------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy1863         144 TFLRMNDVSQAVDVLKSCD-----------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMA  212 (425)
Q Consensus       144 ~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  212 (425)
                      ++.......+.+-.++..+           +.....|......-...|+++...-.|++++--.......|...+.....
T Consensus       264 ~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~  343 (577)
T KOG1258|consen  264 VYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMES  343 (577)
T ss_pred             HHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHH
Confidence            3344445555566666665           33445666677777889999999999999998888888999999999989


Q ss_pred             hcCHHHHHHHHHHHHhc-CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH--
Q psy1863         213 REDYVKGKELYVHALDN-DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASD--  289 (425)
Q Consensus       213 ~g~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--  289 (425)
                      .|+.+-|-..+..+.+. .|..+.+...-+..--..|++..|...+++..+-.|+...+-..........|+.+.+..  
T Consensus       344 ~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~  423 (577)
T KOG1258|consen  344 SGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKN  423 (577)
T ss_pred             cCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHH
Confidence            99999999888888877 567788888888888889999999999999998889888888888888888899988883  


Q ss_pred             -HHHHHHHhcCcchH-----HHHHHHh------hHHHHHHHHHHHHhhcCCchhhHh
Q psy1863         290 -VNENLLLEAVRNDA-----LSQLHRE------MKHEAEKCILTSAKLIAPSIEDNF  334 (425)
Q Consensus       290 -~~~~~a~~~~p~~~-----~~~l~~~------~~~~A~~~~~~a~~~~~~~~~~~~  334 (425)
                       .+.. ...-..+..     +.+.++.      +.+.|...+.++.+..|.+...+.
T Consensus       424 ~l~s~-~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~  479 (577)
T KOG1258|consen  424 ELYSS-IYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYL  479 (577)
T ss_pred             HHHHH-hcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHH
Confidence             3333 222111111     3333333      888999999999999888765443

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.07  E-value=0.045  Score=50.36  Aligned_cols=131  Identities=9%  Similarity=-0.004  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh--------hHHHHHHHHH
Q psy1863         251 SDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE--------MKHEAEKCIL  320 (425)
Q Consensus       251 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~--------~~~~A~~~~~  320 (425)
                      +.-+..+++|++.+|++...+..+-.+..+..+.++...-+++ ++..+|+++  |..+-..        .+......|.
T Consensus        48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~-~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~  126 (321)
T PF08424_consen   48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEE-LLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE  126 (321)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence            3444555555555555555555555555555555555555555 555555554  2111111        3444444555


Q ss_pred             HHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCc
Q psy1863         321 TSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAA  389 (425)
Q Consensus       321 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  389 (425)
                      ++++............       .............+...+.......|..+.|+..++......-..|
T Consensus       127 ~~l~~L~~~~~~~~~~-------~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P  188 (321)
T PF08424_consen  127 KCLRALSRRRSGRMTS-------HPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRP  188 (321)
T ss_pred             HHHHHHHHhhcccccc-------ccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCc
Confidence            4444332211111000       0000011111234455677777888888999988888865444333

>KOG4507|consensus

Probab=96.99  E-value=0.0029  Score=60.14  Aligned_cols=92  Identities=16%  Similarity=0.058  Sum_probs=51.1

Q ss_pred             HHhcCHHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy1863         211 MAREDYVKGKELYVHALDNDATC-IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASD  289 (425)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  289 (425)
                      ...|+...|+.++..++...|.. .....++|.+..+.|-..+|...+.+++.+....+-.++.+|..+..+.+.+.|++
T Consensus       618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~  697 (886)
T KOG4507|consen  618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE  697 (886)
T ss_pred             eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence            34555555555555555555532 22344555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHhcCcchH
Q psy1863         290 VNENLLLEAVRNDA  303 (425)
Q Consensus       290 ~~~~~a~~~~p~~~  303 (425)
                      .|+. |++.+|+++
T Consensus       698 ~~~~-a~~~~~~~~  710 (886)
T KOG4507|consen  698 AFRQ-ALKLTTKCP  710 (886)
T ss_pred             HHHH-HHhcCCCCh
Confidence            5555 555555555

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.98  E-value=0.0016  Score=37.08  Aligned_cols=25  Identities=20%  Similarity=0.363  Sum_probs=9.3

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcC
Q psy1863         206 LGNCAMAREDYVKGKELYVHALDND  230 (425)
Q Consensus       206 la~~~~~~g~~~~A~~~~~~al~~~  230 (425)
                      +|.++...|++++|+..|++++...
T Consensus         6 ~a~~~~~~g~~~~A~~~~~~~~~~~   30 (33)
T PF13174_consen    6 LARCYYKLGDYDEAIEYFQRLIKRY   30 (33)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHC
Confidence            3333333333333333333333333

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.97  E-value=0.0015  Score=37.19  Aligned_cols=33  Identities=15%  Similarity=0.162  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy1863         167 SAATNLSFIYFLQGEVEQAEKMAEEACTADTYN  199 (425)
Q Consensus       167 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  199 (425)
                      ++++.+|.++...|++++|+..|+++++..|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            468899999999999999999999999999874

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.95  E-value=0.29  Score=44.44  Aligned_cols=161  Identities=20%  Similarity=0.144  Sum_probs=121.3

Q ss_pred             HHHHHcCCHHHHHHHHHhcc-cchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----h
Q psy1863         143 VTFLRMNDVSQAVDVLKSCD-EMTSSAATNLSFIYFL----QGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMA----R  213 (425)
Q Consensus       143 ~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~  213 (425)
                      ......+++..|...+..+- ...+.+...++.+|..    ..+..+|..+|..+  ....++.+.+.+|..|..    .
T Consensus        49 ~~~~~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~  126 (292)
T COG0790          49 AGSAYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVP  126 (292)
T ss_pred             ccccccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcc
Confidence            34445678888888888876 3455788888888876    35688899999944  456678889999999987    4


Q ss_pred             cCHHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----c
Q psy1863         214 EDYVKGKELYVHALDNDATC-IEALYNLGLAHKHLN-------EYSDSLECFHKLQAIVPSMPEVLYQIASLYEI----T  281 (425)
Q Consensus       214 g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~  281 (425)
                      .+..+|..+|+++....... ..+.+.+|.+|..-+       +...|...|.++-...  ++.+.+.+|.+|..    .
T Consensus       127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~  204 (292)
T COG0790         127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVP  204 (292)
T ss_pred             cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCC
Confidence            59999999999999885333 344788888887642       2337888888887765  78899999988865    3


Q ss_pred             CCHHHHHHHHHHHHHhcCcchHHHHHH
Q psy1863         282 GDVEQASDVNENLLLEAVRNDALSQLH  308 (425)
Q Consensus       282 g~~~~A~~~~~~~a~~~~p~~~~~~l~  308 (425)
                      .++++|..+|.+ +.+.........++
T Consensus       205 ~d~~~A~~wy~~-Aa~~g~~~a~~~~~  230 (292)
T COG0790         205 RDLKKAFRWYKK-AAEQGDGAACYNLG  230 (292)
T ss_pred             cCHHHHHHHHHH-HHHCCCHHHHHHHH
Confidence            489999999999 88877622244444

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.94  E-value=0.002  Score=37.61  Aligned_cols=26  Identities=27%  Similarity=0.505  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1863         237 LYNLGLAHKHLNEYSDSLECFHKLQA  262 (425)
Q Consensus       237 ~~~la~~~~~~g~~~~A~~~~~~al~  262 (425)
                      +.++|.+|..+|++++|+++|++++.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            55666666666666666666666443

>KOG0985|consensus

Probab=96.93  E-value=0.45  Score=48.93  Aligned_cols=176  Identities=16%  Similarity=0.126  Sum_probs=113.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC-------------
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD--TYN-------------  199 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~-------------  199 (425)
                      .++|-.+|...++.|...+|++.|-++  ++|..+...-.+....|.|++-+.++..+-+..  |.-             
T Consensus      1104 p~vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~r 1181 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNR 1181 (1666)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhch
Confidence            456677788888888888888777776  666777777777788888888887777665442  111             


Q ss_pred             ------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--
Q psy1863         200 ------------SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP--  265 (425)
Q Consensus       200 ------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--  265 (425)
                                  ..-.-..|.-++..|.|+.|.-+|..        ..-|..++..+..+|+|+.|...-+++-....  
T Consensus      1182 l~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK 1253 (1666)
T KOG0985|consen 1182 LTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWK 1253 (1666)
T ss_pred             HHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHH
Confidence                        11122334444455555555444432        33466788888889999999888877643321  


Q ss_pred             -----------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh----hHHHHH
Q psy1863         266 -----------------------SMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE----MKHEAE  316 (425)
Q Consensus       266 -----------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~----~~~~A~  316 (425)
                                             -..+-+-.+...|...|-+++-+..++. ++.+...+.  +..|+.+    .+++-.
T Consensus      1254 ~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea-~LGLERAHMgmfTELaiLYskykp~km~ 1332 (1666)
T KOG0985|consen 1254 EVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEA-GLGLERAHMGMFTELAILYSKYKPEKMM 1332 (1666)
T ss_pred             HHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh-hhchhHHHHHHHHHHHHHHHhcCHHHHH
Confidence                                   1223344566677788888888888888 887766555  5556655    555555


Q ss_pred             HHHHH
Q psy1863         317 KCILT  321 (425)
Q Consensus       317 ~~~~~  321 (425)
                      +.++-
T Consensus      1333 EHl~L 1337 (1666)
T KOG0985|consen 1333 EHLKL 1337 (1666)
T ss_pred             HHHHH
Confidence            54443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.92  E-value=0.0017  Score=37.90  Aligned_cols=28  Identities=39%  Similarity=0.458  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q psy1863         202 AFVNLGNCAMAREDYVKGKELYVHALDN  229 (425)
Q Consensus       202 ~~~~la~~~~~~g~~~~A~~~~~~al~~  229 (425)
                      ++.+||.+|...|+|++|+.+|++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4677888888888888888888886544

>KOG0985|consensus

Probab=96.90  E-value=0.42  Score=49.16  Aligned_cols=84  Identities=14%  Similarity=0.085  Sum_probs=57.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcc-------------------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1863         141 KAVTFLRMNDVSQAVDVLKSCD-------------------------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA  195 (425)
Q Consensus       141 ~a~~~~~~g~~~~A~~~~~~~~-------------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  195 (425)
                      .|.+....+-|++|..+|++.-                         -..+.+|..+|......|...+|++.|-++   
T Consensus      1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred             HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence            4666777777888888877753                         344667777777777777777777777543   


Q ss_pred             CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q psy1863         196 DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN  229 (425)
Q Consensus       196 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  229 (425)
                        +++..+.....+..+.|.|++-+.++..+-+.
T Consensus      1131 --dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1131 --DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred             --CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence              45566666666677777777777777666554

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=96.87  E-value=0.64  Score=47.21  Aligned_cols=162  Identities=11%  Similarity=-0.001  Sum_probs=94.0

Q ss_pred             chhhHHHHHHHHHHHHcCCHHHHHHHHHhcc-cch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CCHHHHH
Q psy1863         132 SLAQDLEINKAVTFLRMNDVSQAVDVLKSCD-EMT-SSAATNLSFIYFLQGEVEQAEKMAEEACTADT-----YNSAAFV  204 (425)
Q Consensus       132 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~  204 (425)
                      +...++...-+..+...|...+|+...-.+- |.. +......|.-.+..++..-    ....++.-|     .++....
T Consensus       344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsl----l~~~~~~lP~~~l~~~P~Lvl  419 (894)
T COG2909         344 ARLKELHRAAAEWFAEHGLPSEAIDHALAAGDPEMAADLLEQLEWQLFNGSELSL----LLAWLKALPAELLASTPRLVL  419 (894)
T ss_pred             CchhHHHHHHHHHHHhCCChHHHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHH----HHHHHHhCCHHHHhhCchHHH
Confidence            4456777777778888888888887666553 221 2222333444444444332    222222222     2334445


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCcC--c-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHH
Q psy1863         205 NLGNCAMAREDYVKGKELYVHALDNDAT--C-------IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM-----PEV  270 (425)
Q Consensus       205 ~la~~~~~~g~~~~A~~~~~~al~~~~~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~  270 (425)
                      ..+.......++++|..+..++...-|.  .       ....-..|.+....|+++.|++..+.++..-|.+     ..+
T Consensus       420 l~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~  499 (894)
T COG2909         420 LQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVA  499 (894)
T ss_pred             HHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhh
Confidence            5556666677777777776666544222  1       2333445666667777777777777777766643     235


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy1863         271 LYQIASLYEITGDVEQASDVNENLLLEA  298 (425)
Q Consensus       271 ~~~la~~~~~~g~~~~A~~~~~~~a~~~  298 (425)
                      ...+|.+..-.|++++|..+... +.++
T Consensus       500 ~sv~~~a~~~~G~~~~Al~~~~~-a~~~  526 (894)
T COG2909         500 LSVLGEAAHIRGELTQALALMQQ-AEQM  526 (894)
T ss_pred             hhhhhHHHHHhchHHHHHHHHHH-HHHH
Confidence            56677777777777777777776 6665

>KOG0530|consensus

Probab=96.87  E-value=0.12  Score=44.62  Aligned_cols=159  Identities=11%  Similarity=-0.025  Sum_probs=116.1

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHH-HHH
Q psy1863         177 FLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE-DYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYS-DSL  254 (425)
Q Consensus       177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~-~A~  254 (425)
                      .....-..|+.....++.++|.+..+|...-.++..++ +..+-+.++...+..+|.+.++|...-.+....|++. .-+
T Consensus        54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL  133 (318)
T KOG0530|consen   54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL  133 (318)
T ss_pred             hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence            33445567788888888888888888777766665543 5677788888888888888888888888888888777 778


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHH--------HHHh---hHHHHHHHHHH
Q psy1863         255 ECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQ--------LHRE---MKHEAEKCILT  321 (425)
Q Consensus       255 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~--------l~~~---~~~~A~~~~~~  321 (425)
                      +..+.++..+..+-.+|...-.+....+.++.-+.+..+ .++.+--+.  |..        .|..   ..+.-+.+..+
T Consensus       134 ef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~-Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~  212 (318)
T KOG0530|consen  134 EFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADE-LLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKD  212 (318)
T ss_pred             HHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHH-HHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888 666553332  221        1111   44555667778


Q ss_pred             HHhhcCCchhhHhhc
Q psy1863         322 SAKLIAPSIEDNFSN  336 (425)
Q Consensus       322 a~~~~~~~~~~~~~~  336 (425)
                      .+...|.+..+|..+
T Consensus       213 ~I~~vP~NeSaWnYL  227 (318)
T KOG0530|consen  213 KILLVPNNESAWNYL  227 (318)
T ss_pred             HHHhCCCCccHHHHH
Confidence            888888887766543

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=96.83  E-value=0.49  Score=47.99  Aligned_cols=194  Identities=14%  Similarity=0.091  Sum_probs=124.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc---c---------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---E---------MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS--  200 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--  200 (425)
                      +.+.+..|+......++.+|..++.++.   +         ..+......|.+....|++++|+++.+.++..-|.+.  
T Consensus       415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~  494 (894)
T COG2909         415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR  494 (894)
T ss_pred             chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence            4566778999999999999999988876   1         1234455668888999999999999999998877653  


Q ss_pred             ---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc----Cc--HHHHHHHHHHHHHcCC--HHHHHHHHHHHHh----hCC
Q psy1863         201 ---AAFVNLGNCAMAREDYVKGKELYVHALDNDA----TC--IEALYNLGLAHKHLNE--YSDSLECFHKLQA----IVP  265 (425)
Q Consensus       201 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----~~--~~~~~~la~~~~~~g~--~~~A~~~~~~al~----~~p  265 (425)
                         .+...+|.+..-.|++++|..+..++.+...    ..  ..+....+.++..+|+  +.+....|...-.    ..|
T Consensus       495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~  574 (894)
T COG2909         495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKP  574 (894)
T ss_pred             hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcc
Confidence               4578889999999999999999999887732    22  3344566788888883  3333333333222    123


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----CcchH-----HHHHHHh-----hHHHHHHHHHHHHhhcCCc
Q psy1863         266 SMPEVLYQIASLYEITGDVEQASDVNENLLLEA----VRNDA-----LSQLHRE-----MKHEAEKCILTSAKLIAPS  329 (425)
Q Consensus       266 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~----~p~~~-----~~~l~~~-----~~~~A~~~~~~a~~~~~~~  329 (425)
                      -........+.++...-+++.+..-..+ .++.    .|...     +..|+.+     +.++|.....+........
T Consensus       575 ~~~f~~~~r~~ll~~~~r~~~~~~ear~-~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~  651 (894)
T COG2909         575 RHEFLVRIRAQLLRAWLRLDLAEAEARL-GIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG  651 (894)
T ss_pred             cchhHHHHHHHHHHHHHHHhhhhHHhhh-cchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence            3222222223332222224444444444 4433    22222     2255555     8888888888877765444

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.82  E-value=0.033  Score=44.55  Aligned_cols=73  Identities=15%  Similarity=0.053  Sum_probs=32.2

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC
Q psy1863         177 FLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNE  249 (425)
Q Consensus       177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  249 (425)
                      ...++.+++...+...--+.|..+..-..-|.+++..|+|.+|+..++.+....|..+.+--.++.|+..+|+
T Consensus        21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D   93 (160)
T PF09613_consen   21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD   93 (160)
T ss_pred             HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence            3344444444444444444444444444444444444444444444444444444444444444444444443

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.80  E-value=0.021  Score=42.42  Aligned_cols=91  Identities=12%  Similarity=0.163  Sum_probs=42.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHhcC-----------HHHHHHHHHHHHhcCcCcHHHHH
Q psy1863         173 SFIYFLQGEVEQAEKMAEEACTADTYNSA---AFVNLGNCAMARED-----------YVKGKELYVHALDNDATCIEALY  238 (425)
Q Consensus       173 g~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~~~~~~~~~  238 (425)
                      +..++..|++-+|++..+..+...+++..   .+..-|.++..+..           .-.++++|.++..+.|..+..++
T Consensus         3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~   82 (111)
T PF04781_consen    3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF   82 (111)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence            34445555555555555555555544432   22222333322211           12245555555555555555555


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhh
Q psy1863         239 NLGLAHKHLNEYSDSLECFHKLQAI  263 (425)
Q Consensus       239 ~la~~~~~~g~~~~A~~~~~~al~~  263 (425)
                      .+|.-+.....|+++..-.++++.+
T Consensus        83 ~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   83 ELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            5555444444455555555555443

>KOG2300|consensus

Probab=96.79  E-value=0.48  Score=44.67  Aligned_cols=178  Identities=12%  Similarity=0.107  Sum_probs=122.2

Q ss_pred             HHcCCHHHHHHHHHhcc---------cch--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC-------
Q psy1863         146 LRMNDVSQAVDVLKSCD---------EMT--------SSAATNLSFIYFLQGEVEQAEKMAEEACTAD---TY-------  198 (425)
Q Consensus       146 ~~~g~~~~A~~~~~~~~---------~~~--------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~-------  198 (425)
                      +..|-+++|.++-++++         +..        ...+-.+..|-.-.|++.+|+.....+.+..   |.       
T Consensus       286 m~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~  365 (629)
T KOG2300|consen  286 MPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAH  365 (629)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHh
Confidence            35567777877777776         111        1234466777788999999999888776653   43       


Q ss_pred             CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC-c--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--------
Q psy1863         199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDAT-C--IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM--------  267 (425)
Q Consensus       199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--------  267 (425)
                      .+.....+|.....-+.++.|...|..+.+.... +  +.+..++|.+|.+.|+-+.--+..+   .+.|.+        
T Consensus       366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~  442 (629)
T KOG2300|consen  366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQR  442 (629)
T ss_pred             HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHH
Confidence            2345677788888889999999999999987443 2  3455789999999887655444444   344532        


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--------HHHHHHh-----hHHHHHHHHHHHHhhcC
Q psy1863         268 --PEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--------LSQLHRE-----MKHEAEKCILTSAKLIA  327 (425)
Q Consensus       268 --~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--------~~~l~~~-----~~~~A~~~~~~a~~~~~  327 (425)
                        ..+++..|...+.++++.+|...+.+ .++......        +.-|+.+     +..++.....-+++...
T Consensus       443 l~a~~~~v~glfaf~qn~lnEaK~~l~e-~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAk  516 (629)
T KOG2300|consen  443 LEASILYVYGLFAFKQNDLNEAKRFLRE-TLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAK  516 (629)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHH-HHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHh
Confidence              23667778888899999999999999 888752222        2223333     66677776666666543

>KOG1839|consensus

Probab=96.78  E-value=0.015  Score=60.82  Aligned_cols=162  Identities=17%  Similarity=0.121  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHH------HHHhcc----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------C
Q psy1863         136 DLEINKAVTFLRMNDVSQAVD------VLKSCD----EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD--------T  197 (425)
Q Consensus       136 ~~~~~~a~~~~~~g~~~~A~~------~~~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p  197 (425)
                      +.....|......|.+.+|.+      ++....    |..+..+..++.++...|++++|+..-.++.-+.        |
T Consensus       933 ~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~ 1012 (1236)
T KOG1839|consen  933 KDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP 1012 (1236)
T ss_pred             hhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH
Confidence            334566777788888887777      444333    7888999999999999999999999988876543        5


Q ss_pred             CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----
Q psy1863         198 YNSAAFVNLGNCAMAREDYVKGKELYVHALDN--------DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP----  265 (425)
Q Consensus       198 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----  265 (425)
                      +....+.+++...+..+....|...+.++..+        +|.......+++.++...++++.|+.+.+.|+....    
T Consensus      1013 ~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g 1092 (1236)
T KOG1839|consen 1013 NTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLG 1092 (1236)
T ss_pred             HHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcC
Confidence            56677889998889999999999999888765        566677778999999999999999999999988643    


Q ss_pred             ----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy1863         266 ----SMPEVLYQIASLYEITGDVEQASDVNENLLLEA  298 (425)
Q Consensus       266 ----~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~  298 (425)
                          .....+..++..+..++++..|....+. ...+
T Consensus      1093 ~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~-t~~i 1128 (1236)
T KOG1839|consen 1093 PKELETALSYHALARLFESMKDFRNALEHEKV-TYGI 1128 (1236)
T ss_pred             ccchhhhhHHHHHHHHHhhhHHHHHHHHHHhh-HHHH
Confidence                2345677788888888888888777666 5543

>KOG2300|consensus

Probab=96.74  E-value=0.12  Score=48.61  Aligned_cols=125  Identities=13%  Similarity=0.051  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-C--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---------
Q psy1863         166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTY-N--SAAFVNLGNCAMAREDYVKGKELYVHALDNDATC---------  233 (425)
Q Consensus       166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---------  233 (425)
                      +..++.+|......|.++.|...|..|.+.-.. +  ..+..++|.+|.+.|+-+.--+..+.   +.|.+         
T Consensus       367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l  443 (629)
T KOG2300|consen  367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRL  443 (629)
T ss_pred             HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHH
Confidence            444455555555555555555555555544321 1  12234455555555543332222222   22221         


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863         234 -IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS------MPEVLYQIASLYEITGDVEQASDVNEN  293 (425)
Q Consensus       234 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~  293 (425)
                       ..+++..|...+.++++.+|.....+.++....      ..-.+..+|.+....|+..++....+-
T Consensus       444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrp  510 (629)
T KOG2300|consen  444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRP  510 (629)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccch
Confidence             234445555555556666666555555554311      111334455555556666555555444

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.74  E-value=0.1  Score=48.76  Aligned_cols=161  Identities=9%  Similarity=-0.047  Sum_probs=104.6

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC-c--HH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADT----YNSAAFVNLGNCAMAREDYVKGKELYVHALDNDAT-C--IE  235 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~--~~  235 (425)
                      ......|...+.+....|.++.|...+.++...++    ..+.+.+..+......|+..+|+..++..+..... .  ..
T Consensus       143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~  222 (352)
T PF02259_consen  143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI  222 (352)
T ss_pred             hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence            45667888889999999999999999998887652    24677788888889999999999998888873211 1  11


Q ss_pred             --HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhcCcchH--HH
Q psy1863         236 --ALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT------GDVEQASDVNENLLLEAVRNDA--LS  305 (425)
Q Consensus       236 --~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~~a~~~~p~~~--~~  305 (425)
                        .....+..+..............     ......++..+|......      +..+++...|.+ +.+.+|+..  +.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~-a~~~~~~~~k~~~  296 (352)
T PF02259_consen  223 SNAELKSGLLESLEVISSTNLDKES-----KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKE-ATKLDPSWEKAWH  296 (352)
T ss_pred             cHHHHhhccccccccccccchhhhh-----HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHH-HHHhChhHHHHHH
Confidence              11111110000000000000000     001235677778777777      899999999999 999999877  66


Q ss_pred             HHHHh-------h---------------HHHHHHHHHHHHhhcCCc
Q psy1863         306 QLHRE-------M---------------KHEAEKCILTSAKLIAPS  329 (425)
Q Consensus       306 ~l~~~-------~---------------~~~A~~~~~~a~~~~~~~  329 (425)
                      .++..       +               ...|+..|-+++...+..
T Consensus       297 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~  342 (352)
T PF02259_consen  297 SWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKY  342 (352)
T ss_pred             HHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCc
Confidence            66655       1               134778888888887773

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.72  E-value=0.041  Score=44.04  Aligned_cols=85  Identities=16%  Similarity=0.119  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy1863         201 AAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI  280 (425)
Q Consensus       201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  280 (425)
                      ..+..+..+-...++.+++...+.-.--+.|..+..-..-|.++...|++.+|+..++.+....|..+.+--.++.|+..
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            45667777778889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHH
Q psy1863         281 TGDVE  285 (425)
Q Consensus       281 ~g~~~  285 (425)
                      +|+..
T Consensus        91 ~~D~~   95 (160)
T PF09613_consen   91 LGDPS   95 (160)
T ss_pred             cCChH
Confidence            98864

>KOG1550|consensus

Probab=96.71  E-value=0.1  Score=51.88  Aligned_cols=142  Identities=23%  Similarity=0.179  Sum_probs=111.3

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHhc-----CcCcHHHHHHHHHHHHHcC--
Q psy1863         181 EVEQAEKMAEEACTADTYNSAAFVNLGNCAMAR-----EDYVKGKELYVHALDN-----DATCIEALYNLGLAHKHLN--  248 (425)
Q Consensus       181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~g--  248 (425)
                      +...|..+++.+.+.  .+..+...+|.+|..-     .+.+.|+.+|+.+...     .-.++.+.+.+|.+|.+..  
T Consensus       227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~  304 (552)
T KOG1550|consen  227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV  304 (552)
T ss_pred             hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence            356788888887654  4677788888887754     6899999999999771     1124667889999998843  


Q ss_pred             ---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCcchHHHHHHHh---------hHH
Q psy1863         249 ---EYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG---DVEQASDVNENLLLEAVRNDALSQLHRE---------MKH  313 (425)
Q Consensus       249 ---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~a~~~~p~~~~~~l~~~---------~~~  313 (425)
                         +++.|+.+|.++-..  .++.+.+.+|.++..-.   +...|..+|.. |....-......++.+         +..
T Consensus       305 ~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~-Aa~~G~~~A~~~la~~y~~G~gv~r~~~  381 (552)
T KOG1550|consen  305 EKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSL-AAKAGHILAIYRLALCYELGLGVERNLE  381 (552)
T ss_pred             ccccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHH-HHHcCChHHHHHHHHHHHhCCCcCCCHH
Confidence               778899999998766  47889999999988765   67899999999 8876555554555554         899


Q ss_pred             HHHHHHHHHHhhcC
Q psy1863         314 EAEKCILTSAKLIA  327 (425)
Q Consensus       314 ~A~~~~~~a~~~~~  327 (425)
                      .|..++.++....+
T Consensus       382 ~A~~~~k~aA~~g~  395 (552)
T KOG1550|consen  382 LAFAYYKKAAEKGN  395 (552)
T ss_pred             HHHHHHHHHHHccC
Confidence            99999999999884

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.70  E-value=0.14  Score=47.76  Aligned_cols=137  Identities=14%  Similarity=0.038  Sum_probs=105.6

Q ss_pred             chhhHHHHHHHHHHHHcCCHHHHHHHHHhcc-----------------------------cch---HHHHHHHHHHHHHc
Q psy1863         132 SLAQDLEINKAVTFLRMNDVSQAVDVLKSCD-----------------------------EMT---SSAATNLSFIYFLQ  179 (425)
Q Consensus       132 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~-----------------------------~~~---~~~~~~lg~~~~~~  179 (425)
                      +...+.++.++.++..+|+...|.+++++++                             +.+   -.+.+.......+.
T Consensus        37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~R  116 (360)
T PF04910_consen   37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRR  116 (360)
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhc
Confidence            3356778999999999999999999999987                             111   13455666778889


Q ss_pred             CCHHHHHHHHHHHHhcCCC-CHHH-HHHHHHHHHHhcCHHHHHHHHHHHHhcCc-----CcHHHHHHHHHHHHHcCCH--
Q psy1863         180 GEVEQAEKMAEEACTADTY-NSAA-FVNLGNCAMAREDYVKGKELYVHALDNDA-----TCIEALYNLGLAHKHLNEY--  250 (425)
Q Consensus       180 g~~~~A~~~~~~al~~~p~-~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~g~~--  250 (425)
                      |-+..|.++.+-.+.++|. ++-. .+.+=....+.++|+--+..++.......     .-|...+..+.+++..++-  
T Consensus       117 G~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~  196 (360)
T PF04910_consen  117 GCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEES  196 (360)
T ss_pred             CcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccc
Confidence            9999999999999999998 6644 44444445677888888888887665311     1345778888999999888  


Q ss_pred             -------------HHHHHHHHHHHhhCCCCH
Q psy1863         251 -------------SDSLECFHKLQAIVPSMP  268 (425)
Q Consensus       251 -------------~~A~~~~~~al~~~p~~~  268 (425)
                                   +.|...+.+|+...|...
T Consensus       197 ~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl  227 (360)
T PF04910_consen  197 SQSSAQSGRSENSESADEALQKAILRFPWVL  227 (360)
T ss_pred             cccccccccccchhHHHHHHHHHHHHhHHHH
Confidence                         899999999999887433

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG3824|consensus

Probab=96.66  E-value=0.0085  Score=52.57  Aligned_cols=73  Identities=22%  Similarity=0.231  Sum_probs=61.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q psy1863         171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLA  243 (425)
Q Consensus       171 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~  243 (425)
                      ..+.-....|+.++|...|+.|+.++|.++.++..+|......++.-+|-.+|-+++.+.|.+.+++.+.+..
T Consensus       121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            3444556688999999999999999999999999999988888889999999999999999988888776543

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.66  E-value=0.025  Score=40.96  Aligned_cols=66  Identities=17%  Similarity=0.217  Sum_probs=38.8

Q ss_pred             HHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHH
Q psy1863         220 KELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM--PEVLYQIASLYEITGDVE  285 (425)
Q Consensus       220 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~  285 (425)
                      +..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++.  ..+.-.+-.++..+|.-+
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~   75 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD   75 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence            445666666677777777777777777777777777777777666543  445555555555555543

>PRK10941 hypothetical protein; Provisional

Probab=96.63  E-value=0.03  Score=49.66  Aligned_cols=70  Identities=14%  Similarity=0.036  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy1863         203 FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLY  272 (425)
Q Consensus       203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  272 (425)
                      ..++-.+|.+.++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+-.
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~  253 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM  253 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence            4455556666666666666666666666666666666666666666666666666666666666665443

>KOG3824|consensus

Probab=96.62  E-value=0.0089  Score=52.45  Aligned_cols=71  Identities=24%  Similarity=0.278  Sum_probs=63.2

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy1863         206 LGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIAS  276 (425)
Q Consensus       206 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  276 (425)
                      .+.-....|+.++|...|+.++.+.|++++++..+|......++.-+|-.+|-+++.++|.+..++.+.+.
T Consensus       122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  122 AAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            34445678999999999999999999999999999999998899999999999999999999988877654

>KOG4507|consensus

Probab=96.61  E-value=0.0043  Score=58.99  Aligned_cols=101  Identities=20%  Similarity=0.204  Sum_probs=63.3

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHH
Q psy1863         178 LQGEVEQAEKMAEEACTADTYNSA-AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC  256 (425)
Q Consensus       178 ~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~  256 (425)
                      .+|+...|++++..|+...|.... ...+++++....|-...|-..+.+++.+..+.+-..+.+|..+..+.+.+.|++.
T Consensus       619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~  698 (886)
T KOG4507|consen  619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA  698 (886)
T ss_pred             ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence            356666666666666666654432 3566666666666666666666666666655566666666666666666666666


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHH
Q psy1863         257 FHKLQAIVPSMPEVLYQIASLY  278 (425)
Q Consensus       257 ~~~al~~~p~~~~~~~~la~~~  278 (425)
                      |+.++..+|+++.+-..|-.+-
T Consensus       699 ~~~a~~~~~~~~~~~~~l~~i~  720 (886)
T KOG4507|consen  699 FRQALKLTTKCPECENSLKLIR  720 (886)
T ss_pred             HHHHHhcCCCChhhHHHHHHHH
Confidence            6666666666666555544443

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.60  E-value=0.2  Score=46.04  Aligned_cols=136  Identities=15%  Similarity=-0.007  Sum_probs=101.3

Q ss_pred             cchHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q psy1863         163 EMTSSAATNLSFIYFLQG------------EVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND  230 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  230 (425)
                      |.+..+|..+....-..-            -.+.-+..+++|++.+|++...+..+-.+..+..+.++..+-+++++..+
T Consensus        16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~   95 (321)
T PF08424_consen   16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN   95 (321)
T ss_pred             cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            566666665554433321            14567788999999999999998888888888889999999999999999


Q ss_pred             cCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCC------------------CHHHHHHHHHHHHHcCCHHHHHH
Q psy1863         231 ATCIEALYNLGLAHKH---LNEYSDSLECFHKLQAIVPS------------------MPEVLYQIASLYEITGDVEQASD  289 (425)
Q Consensus       231 ~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~------------------~~~~~~~la~~~~~~g~~~~A~~  289 (425)
                      |+++..|...-.....   .-.++.....|.++++....                  ...++..+.....+.|-.+.|+.
T Consensus        96 ~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava  175 (321)
T PF08424_consen   96 PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVA  175 (321)
T ss_pred             CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHH
Confidence            9998888765544433   34577888888877765220                  12345667777888999999999


Q ss_pred             HHHHHHHhcC
Q psy1863         290 VNENLLLEAV  299 (425)
Q Consensus       290 ~~~~~a~~~~  299 (425)
                      .++- .++++
T Consensus       176 ~~Qa-~lE~n  184 (321)
T PF08424_consen  176 LWQA-LLEFN  184 (321)
T ss_pred             HHHH-HHHHH
Confidence            9999 88874

>KOG2396|consensus

Probab=96.54  E-value=0.04  Score=51.77  Aligned_cols=84  Identities=6%  Similarity=0.009  Sum_probs=55.3

Q ss_pred             HHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcC
Q psy1863         155 VDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARED-YVKGKELYVHALDND  230 (425)
Q Consensus       155 ~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~  230 (425)
                      ..+|+.+.   +.++..|..........+.+.+--..|.+++..+|+++..|..-|.-.+.-+. .+.|...|.++++.+
T Consensus        91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n  170 (568)
T KOG2396|consen   91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN  170 (568)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence            34455555   55566666655555555557777777777777777777777777666666555 677777777777777


Q ss_pred             cCcHHHHH
Q psy1863         231 ATCIEALY  238 (425)
Q Consensus       231 ~~~~~~~~  238 (425)
                      |+++..|.
T Consensus       171 pdsp~Lw~  178 (568)
T KOG2396|consen  171 PDSPKLWK  178 (568)
T ss_pred             CCChHHHH
Confidence            77776664

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.48  E-value=0.022  Score=36.35  Aligned_cols=35  Identities=29%  Similarity=0.448  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy1863         237 LYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVL  271 (425)
Q Consensus       237 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  271 (425)
                      ++.+|..+.++|+|++|..+.+.+++..|++..+.
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~   38 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ   38 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            44455555555555555555555555555554443

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.39  E-value=0.4  Score=38.82  Aligned_cols=140  Identities=14%  Similarity=0.122  Sum_probs=94.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcc-----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CH--HHHHHHHHH
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCD-----EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTY--NS--AAFVNLGNC  209 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~--~~~~~la~~  209 (425)
                      +.-+.-+...+..++|+..|....     .-...+....|.+....|+-..|+..|.++-...|-  -.  .+...-+..
T Consensus        62 flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~l  141 (221)
T COG4649          62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYL  141 (221)
T ss_pred             HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHH
Confidence            344666777788888888888776     333456677888888888888888888887655432  11  234445566


Q ss_pred             HHHhcCHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy1863         210 AMAREDYVKGKELYVHAL-DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE  279 (425)
Q Consensus       210 ~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  279 (425)
                      +...|.|++-....+..- ..+|-...+.-.||..-++.|++.+|...|..... +...|....+.+.+..
T Consensus       142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml  211 (221)
T COG4649         142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML  211 (221)
T ss_pred             HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence            677888877665554432 12444456677788888888888888888887665 4455666666555543

>PRK10941 hypothetical protein; Provisional

Probab=96.37  E-value=0.029  Score=49.72  Aligned_cols=68  Identities=16%  Similarity=0.076  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         235 EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       235 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      ....++-.+|.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++. .++..|+++
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~-fl~~~P~dp  249 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSY-FVEQCPEDP  249 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH-HHHhCCCch
Confidence            35678888999999999999999999999999999999999999999999999999999 999999988

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.35  E-value=0.022  Score=36.34  Aligned_cols=36  Identities=19%  Similarity=0.179  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy1863         168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAF  203 (425)
Q Consensus       168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  203 (425)
                      .++.+|..+++.|+|++|..+.+.+++..|++..+.
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~   38 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ   38 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            345555555555555555555555555555555443

>KOG2396|consensus

Probab=96.30  E-value=0.14  Score=48.24  Aligned_cols=93  Identities=9%  Similarity=0.050  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q psy1863         183 EQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNE-YSDSLECFHKLQ  261 (425)
Q Consensus       183 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al  261 (425)
                      ..-...|+.|....+.++..|.+......+.+.+.+-...|.+++..+|+++..|..-|.-.+..+. .+.|...|.+++
T Consensus        88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL  167 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL  167 (568)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence            3456778888888888888888888777777778888888999999999999888888887777665 888888889999


Q ss_pred             hhCCCCHHHHHHHH
Q psy1863         262 AIVPSMPEVLYQIA  275 (425)
Q Consensus       262 ~~~p~~~~~~~~la  275 (425)
                      +.+|+.+..|...-
T Consensus       168 R~npdsp~Lw~eyf  181 (568)
T KOG2396|consen  168 RFNPDSPKLWKEYF  181 (568)
T ss_pred             hcCCCChHHHHHHH
Confidence            99988888775433

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.25  E-value=0.064  Score=38.81  Aligned_cols=67  Identities=18%  Similarity=0.081  Sum_probs=48.7

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc--HHHHHHHHHHHHHcCCHH
Q psy1863         185 AEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC--IEALYNLGLAHKHLNEYS  251 (425)
Q Consensus       185 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~  251 (425)
                      .+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++.  ..+...+-.++..+|.-+
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~   75 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD   75 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence            4567788888999999999999999999999999999999999888765  445555555555555543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.23  E-value=0.69  Score=41.64  Aligned_cols=91  Identities=18%  Similarity=0.218  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHhc-CHHHHHHHHHHHHhc----Cc------C----cHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhC
Q psy1863         203 FVNLGNCAMARE-DYVKGKELYVHALDN----DA------T----CIEALYNLGLAHKHLNEYS---DSLECFHKLQAIV  264 (425)
Q Consensus       203 ~~~la~~~~~~g-~~~~A~~~~~~al~~----~~------~----~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~  264 (425)
                      +++.|......+ ++++|...++++.+.    .+      +    ...++..++.+|...+.++   +|....+.+-...
T Consensus        38 ~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~  117 (278)
T PF08631_consen   38 CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY  117 (278)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC
Confidence            444455555555 555555555554443    10      0    0234555666666555443   3333333444444


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863         265 PSMPEVLYQIASLYEITGDVEQASDVNEN  293 (425)
Q Consensus       265 p~~~~~~~~la~~~~~~g~~~~A~~~~~~  293 (425)
                      |+.+..+...-.+....++.+.+.+.+.+
T Consensus       118 ~~~~~~~~L~l~il~~~~~~~~~~~~L~~  146 (278)
T PF08631_consen  118 GNKPEVFLLKLEILLKSFDEEEYEEILMR  146 (278)
T ss_pred             CCCcHHHHHHHHHHhccCChhHHHHHHHH
Confidence            55555543333333335666666666666

It is also involved in sporulation [].

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.19  E-value=0.064  Score=39.89  Aligned_cols=91  Identities=18%  Similarity=0.165  Sum_probs=59.1

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCcCcH---HHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCHHHH
Q psy1863         206 LGNCAMAREDYVKGKELYVHALDNDATCI---EALYNLGLAHKHLN-----------EYSDSLECFHKLQAIVPSMPEVL  271 (425)
Q Consensus       206 la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~  271 (425)
                      ++..++..|++-+|+++.+..+..++++.   ..+..-|.++..+.           -.-.|+++|.++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            45677889999999999999998877665   44555666665432           12355666666666666666666


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy1863         272 YQIASLYEITGDVEQASDVNENLLLE  297 (425)
Q Consensus       272 ~~la~~~~~~g~~~~A~~~~~~~a~~  297 (425)
                      +.+|.-+.....|+++..-.++ ++.
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak~-~Ls  106 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAKR-GLS  106 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHH-Hhc
Confidence            6666555555555555555555 444

>smart00028 TPR Tetratricopeptide repeats

Probab=96.16  E-value=0.01  Score=32.92  Aligned_cols=30  Identities=30%  Similarity=0.334  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy1863         168 AATNLSFIYFLQGEVEQAEKMAEEACTADT  197 (425)
Q Consensus       168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  197 (425)
                      ++..+|.++...|++++|+..++++++..|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            344444444444444444444444444443

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>smart00028 TPR Tetratricopeptide repeats

Probab=96.15  E-value=0.0096  Score=33.00  Aligned_cols=26  Identities=38%  Similarity=0.678  Sum_probs=10.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy1863         238 YNLGLAHKHLNEYSDSLECFHKLQAI  263 (425)
Q Consensus       238 ~~la~~~~~~g~~~~A~~~~~~al~~  263 (425)
                      ..+|.++...|++++|+.++.++++.
T Consensus         5 ~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        5 YNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            33444444444444444444444433

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG3364|consensus

Probab=96.13  E-value=0.11  Score=40.09  Aligned_cols=72  Identities=15%  Similarity=0.192  Sum_probs=49.1

Q ss_pred             chhhHHHHHHHHHHHHcC---CHHHHHHHHHhcc-----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy1863         132 SLAQDLEINKAVTFLRMN---DVSQAVDVLKSCD-----EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAF  203 (425)
Q Consensus       132 ~~~~~~~~~~a~~~~~~g---~~~~A~~~~~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  203 (425)
                      ....+..+++|+.+....   +..+.+.+++..+     ...-+..+.|+..+++.++|+.++.+.+..++..|+|..+.
T Consensus        29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~  108 (149)
T KOG3364|consen   29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL  108 (149)
T ss_pred             cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            444555677777777665   4455666666666     23345667777778888888888888888888777776654

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.99  E-value=0.44  Score=39.56  Aligned_cols=101  Identities=18%  Similarity=0.069  Sum_probs=68.1

Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc--CcH----
Q psy1863         164 MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN---SAAFVNLGNCAMAREDYVKGKELYVHALDNDA--TCI----  234 (425)
Q Consensus       164 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~----  234 (425)
                      .-..++..+|..|...|+.++|++.|.++.+.....   ...+.++..+.+..|++.....+..++-..-.  .+.    
T Consensus        34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~n  113 (177)
T PF10602_consen   34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRN  113 (177)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence            334677788888888888888888888877665332   24567777777888888888888877765522  222    


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy1863         235 EALYNLGLAHKHLNEYSDSLECFHKLQAIV  264 (425)
Q Consensus       235 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~  264 (425)
                      .....-|..+...++|..|-..|-.+....
T Consensus       114 rlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  114 RLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            123345666667777777777776654433

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.93  E-value=0.14  Score=43.80  Aligned_cols=43  Identities=14%  Similarity=0.253  Sum_probs=24.9

Q ss_pred             cCCHHHHHHHHHhcc----------cchHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy1863         148 MNDVSQAVDVLKSCD----------EMTSSAATNLSFIYFLQGEVEQAEKMAE  190 (425)
Q Consensus       148 ~g~~~~A~~~~~~~~----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~  190 (425)
                      ...+++|++.|.-++          ...+..+..+|.+|...|+.+....+++
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~  142 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLR  142 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence            345666666666655          2234566677777777777444443333

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.89  E-value=0.19  Score=37.77  Aligned_cols=86  Identities=16%  Similarity=0.058  Sum_probs=50.8

Q ss_pred             HhcCHHHHHHHHHHHHhcCcC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCH----
Q psy1863         212 AREDYVKGKELYVHALDNDAT------------CIEALYNLGLAHKHLNEYSDSLECFHKLQAI-------VPSMP----  268 (425)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~----  268 (425)
                      .-|-|++|..-+++++....+            +..++..|+.++..+|+|++++..-.+++..       +.+..    
T Consensus        21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI  100 (144)
T PF12968_consen   21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI  100 (144)
T ss_dssp             HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence            345566666666666654211            1334556666777777777776666666543       22222    


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy1863         269 EVLYQIASLYEITGDVEQASDVNENLLLEA  298 (425)
Q Consensus       269 ~~~~~la~~~~~~g~~~~A~~~~~~~a~~~  298 (425)
                      .+.++.+..+..+|+.++|+..|+. +.++
T Consensus       101 aaVfsra~Al~~~Gr~~eA~~~fr~-agEM  129 (144)
T PF12968_consen  101 AAVFSRAVALEGLGRKEEALKEFRM-AGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHHH-HHHH
Confidence            3456777788888888888888887 6554

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.85  E-value=0.88  Score=40.00  Aligned_cols=95  Identities=16%  Similarity=0.106  Sum_probs=52.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCH
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA-----DTYNS  200 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~  200 (425)
                      .++...+...+++.|.|.+|+......+         +.-..++..-..+|....+..++...+..|-..     .|...
T Consensus       125 ~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpql  204 (421)
T COG5159         125 LELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQL  204 (421)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHH
Confidence            3444556667777777777776665554         334455555666666666666655555444322     13322


Q ss_pred             HHHH--HHHHHHHHhcCHHHHHHHHHHHHhc
Q psy1863         201 AAFV--NLGNCAMAREDYVKGKELYVHALDN  229 (425)
Q Consensus       201 ~~~~--~la~~~~~~g~~~~A~~~~~~al~~  229 (425)
                      .+..  .-|.....-.+|.-|-.+|-++++-
T Consensus       205 qa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg  235 (421)
T COG5159         205 QAQLDLLSGILHCDDRDYKTASSYFIEALEG  235 (421)
T ss_pred             HHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence            2222  2244444555666666666666654

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.85  E-value=0.16  Score=40.03  Aligned_cols=71  Identities=13%  Similarity=0.031  Sum_probs=32.6

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC
Q psy1863         179 QGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNE  249 (425)
Q Consensus       179 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  249 (425)
                      .++.+++...+...--+.|+.+..-..-|.+++..|+|++|+..++......+..+...-.++.|+.-+|+
T Consensus        23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D   93 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD   93 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence            44444444444444444444444444444444444444444444444444444444444444444444443

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG4814|consensus

Probab=95.84  E-value=0.95  Score=44.27  Aligned_cols=90  Identities=13%  Similarity=0.162  Sum_probs=62.5

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCcCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy1863         204 VNLGNCAMAREDYVKGKELYVHALDNDATC------IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASL  277 (425)
Q Consensus       204 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  277 (425)
                      .+-|.-.++..+|..+++.|...+...|++      +....+++.||..+.+.+.|.+++++|-+.+|.++-....+-.+
T Consensus       358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~  437 (872)
T KOG4814|consen  358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQS  437 (872)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            344555667777777777777777665543      44556777777777777777777777777777777666666666


Q ss_pred             HHHcCCHHHHHHHHHH
Q psy1863         278 YEITGDVEQASDVNEN  293 (425)
Q Consensus       278 ~~~~g~~~~A~~~~~~  293 (425)
                      ....|.-++|+.+...
T Consensus       438 ~~~E~~Se~AL~~~~~  453 (872)
T KOG4814|consen  438 FLAEDKSEEALTCLQK  453 (872)
T ss_pred             HHHhcchHHHHHHHHH
Confidence            6667777777777666

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.80  E-value=0.57  Score=35.30  Aligned_cols=96  Identities=14%  Similarity=0.088  Sum_probs=51.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhcc---------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy1863         140 NKAVTFLRMNDVSQAVDVLKSCD---------------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFV  204 (425)
Q Consensus       140 ~~a~~~~~~g~~~~A~~~~~~~~---------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  204 (425)
                      ..|.-.+..|-|++|..-++++.               ..++-++..|+..+..+|+|++++...++++           
T Consensus        14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL-----------   82 (144)
T PF12968_consen   14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRAL-----------   82 (144)
T ss_dssp             HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-----------
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHH-----------
Confidence            33555566677777777777765               1234455666666667777766665554443           


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCcCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1863         205 NLGNCAMAREDYVKGKELYVHALDNDATCIE----ALYNLGLAHKHLNEYSDSLECFHKLQA  262 (425)
Q Consensus       205 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~  262 (425)
                                      .+|.+-=+++.+...    +-++.|..+...|+.++|+..|+.+-+
T Consensus        83 ----------------~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   83 ----------------RYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             ----------------HHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             ----------------HHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence                            223332233333332    234566666667777777777766543

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1258|consensus

Probab=95.79  E-value=2.1  Score=41.70  Aligned_cols=162  Identities=10%  Similarity=0.088  Sum_probs=129.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCH
Q psy1863         141 KAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD-TYNSAAFVNLGNCAMAREDY  216 (425)
Q Consensus       141 ~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~  216 (425)
                      -...-...|+++...-.|++++   ......|...+.-....|+.+-|-..+..+.+.. |..+.+...-+..--..|++
T Consensus       303 yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~  382 (577)
T KOG1258|consen  303 YLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNF  382 (577)
T ss_pred             HhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccH
Confidence            3445567899999999999998   6778899999999999999999999998888876 77778888888888889999


Q ss_pred             HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHH---HHHHHHhhCCC---CHHHHHHHHHH-HHHcCCHHHHHH
Q psy1863         217 VKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLE---CFHKLQAIVPS---MPEVLYQIASL-YEITGDVEQASD  289 (425)
Q Consensus       217 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~---~~~~al~~~p~---~~~~~~~la~~-~~~~g~~~~A~~  289 (425)
                      +.|...+++..+-.|+...+-........+.|+.+.+..   .+.....-..+   ....+...+.. +.-.++.+.|..
T Consensus       383 ~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~  462 (577)
T KOG1258|consen  383 DDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARI  462 (577)
T ss_pred             HHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHH
Confidence            999999999999889988888888888889999999884   33222211111   12334445544 344689999999


Q ss_pred             HHHHHHHhcCcchH
Q psy1863         290 VNENLLLEAVRNDA  303 (425)
Q Consensus       290 ~~~~~a~~~~p~~~  303 (425)
                      .+.+ +.+..|.+.
T Consensus       463 ~l~~-~~~~~~~~k  475 (577)
T KOG1258|consen  463 ILLE-ANDILPDCK  475 (577)
T ss_pred             HHHH-hhhcCCccH
Confidence            9999 999999887

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.79  E-value=0.16  Score=43.48  Aligned_cols=87  Identities=17%  Similarity=0.201  Sum_probs=56.2

Q ss_pred             cCCHHHHHHHHHHHHhcC-----CC--CHHHHHHHHHHHHHhcCHHH-------HHHHHHHHHhcC--c----CcHHHHH
Q psy1863         179 QGEVEQAEKMAEEACTAD-----TY--NSAAFVNLGNCAMAREDYVK-------GKELYVHALDND--A----TCIEALY  238 (425)
Q Consensus       179 ~g~~~~A~~~~~~al~~~-----p~--~~~~~~~la~~~~~~g~~~~-------A~~~~~~al~~~--~----~~~~~~~  238 (425)
                      .-.+++|++.|.-|+-..     +.  -+..+..+|.+|...|+-+.       |...|++++...  |    +...+.+
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y  169 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY  169 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence            345666777666665321     11  24567888888888888544       455555555432  1    1256777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy1863         239 NLGLAHKHLNEYSDSLECFHKLQAIVP  265 (425)
Q Consensus       239 ~la~~~~~~g~~~~A~~~~~~al~~~p  265 (425)
                      .+|.++++.|++++|..+|.+++....
T Consensus       170 LigeL~rrlg~~~eA~~~fs~vi~~~~  196 (214)
T PF09986_consen  170 LIGELNRRLGNYDEAKRWFSRVIGSKK  196 (214)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence            888888888888888888888876543

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.73  E-value=0.21  Score=39.38  Aligned_cols=84  Identities=13%  Similarity=0.045  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy1863         202 AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT  281 (425)
Q Consensus       202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  281 (425)
                      .+......-...++.+++...+...--+.|+.+..-..-|.++...|++.+|+..++......+..+.+.-.++.|+..+
T Consensus        12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al   91 (153)
T TIGR02561        12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK   91 (153)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence            34455555566899999999999888899999999999999999999999999999999888888888888899999888


Q ss_pred             CCHH
Q psy1863         282 GDVE  285 (425)
Q Consensus       282 g~~~  285 (425)
                      ||.+
T Consensus        92 ~Dp~   95 (153)
T TIGR02561        92 GDAE   95 (153)
T ss_pred             CChH
Confidence            8864

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.72  E-value=1.8  Score=40.61  Aligned_cols=169  Identities=13%  Similarity=0.094  Sum_probs=112.4

Q ss_pred             chhhHHHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------------C
Q psy1863         132 SLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA---------------D  196 (425)
Q Consensus       132 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------------~  196 (425)
                      ..+.++++.-.......++-+.|.......++..|.....++.+|....+-+.-..+|+++...               .
T Consensus       299 ~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~  378 (660)
T COG5107         299 YYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKV  378 (660)
T ss_pred             hhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccc
Confidence            3456667776666677888889998888888777778888888888887777766666665432               0


Q ss_pred             CCCH----H-----------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHH-HHHHHcCCHHHHHHHHHHH
Q psy1863         197 TYNS----A-----------AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLG-LAHKHLNEYSDSLECFHKL  260 (425)
Q Consensus       197 p~~~----~-----------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~a  260 (425)
                      .+++    +           ++..+-+.-.+..-.+.|.+.|-++-+..-....++..-| .-|...|++.-|-..|+-.
T Consensus       379 D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelG  458 (660)
T COG5107         379 DNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELG  458 (660)
T ss_pred             cCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHH
Confidence            1111    1           1222223333444566777777777655312222322222 2345678899999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcc
Q psy1863         261 QAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRN  301 (425)
Q Consensus       261 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~  301 (425)
                      +...|+.+......-..+...++-+.|...|++ ++..-..
T Consensus       459 l~~f~d~~~y~~kyl~fLi~inde~naraLFet-sv~r~~~  498 (660)
T COG5107         459 LLKFPDSTLYKEKYLLFLIRINDEENARALFET-SVERLEK  498 (660)
T ss_pred             HHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHH-hHHHHHH
Confidence            999998887777777777888999999999998 7655433

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.62  E-value=0.31  Score=40.40  Aligned_cols=97  Identities=16%  Similarity=0.180  Sum_probs=77.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHH----
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD--TYNSAA----  202 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~----  202 (425)
                      ...+..+|..|.+.|+++.|++.|.++.      ....+.+..+..+.+..|++.....+..++-..-  +.+...    
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl  115 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            4556789999999999999999999987      3456778888899999999999999999887654  233322    


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Q psy1863         203 FVNLGNCAMAREDYVKGKELYVHALDNDA  231 (425)
Q Consensus       203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~  231 (425)
                      ...-|..++..++|.+|-..|-.+..-..
T Consensus       116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~~  144 (177)
T PF10602_consen  116 KVYEGLANLAQRDFKEAAELFLDSLSTFT  144 (177)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence            34457777889999999999988775543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=95.61  E-value=0.19  Score=47.14  Aligned_cols=126  Identities=10%  Similarity=-0.052  Sum_probs=80.8

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHH
Q psy1863         177 FLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC  256 (425)
Q Consensus       177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~  256 (425)
                      +..|+.-.|-.-...++...|..|......+.++..+|+|+.|......+-..-.+...+...+-.....+|++++|...
T Consensus       300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~  379 (831)
T PRK15180        300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST  379 (831)
T ss_pred             hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence            34566666766667777777777776666777777777777777666555444333344444455555667777777777


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         257 FHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       257 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      -.-.+.-.-+++++..--+.....+|-++++..++++ .+.++|...
T Consensus       380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~-~~~~~~~~~  425 (831)
T PRK15180        380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKR-VLLLNPETQ  425 (831)
T ss_pred             HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHH-HhccCChhc
Confidence            6666665555666655555555666777777777777 666665443

>KOG1310|consensus

Probab=95.55  E-value=0.055  Score=51.21  Aligned_cols=93  Identities=15%  Similarity=0.067  Sum_probs=68.9

Q ss_pred             HHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy1863         210 AMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHL---NEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQ  286 (425)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  286 (425)
                      .+..+.+..|+..|.+++...|.....+.+.+.++++.   |+.-.|+..+..+++++|....+++.|+.++..++++.+
T Consensus       384 ~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~e  463 (758)
T KOG1310|consen  384 GLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLE  463 (758)
T ss_pred             hhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHH
Confidence            33444567778888888888888777777777777663   456677777777888888778888888888888888888


Q ss_pred             HHHHHHHHHHhcCcchH
Q psy1863         287 ASDVNENLLLEAVRNDA  303 (425)
Q Consensus       287 A~~~~~~~a~~~~p~~~  303 (425)
                      |+++... +....|.+.
T Consensus       464 al~~~~a-lq~~~Ptd~  479 (758)
T KOG1310|consen  464 ALSCHWA-LQMSFPTDV  479 (758)
T ss_pred             hhhhHHH-HhhcCchhh
Confidence            8887777 666677555

>KOG3364|consensus

Probab=95.49  E-value=0.57  Score=36.23  Aligned_cols=74  Identities=26%  Similarity=0.317  Sum_probs=46.9

Q ss_pred             CHHHHHHHHHHHHHhc---CHHHHHHHHHHHHh-cCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy1863         199 NSAAFVNLGNCAMARE---DYVKGKELYVHALD-NDAT-CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLY  272 (425)
Q Consensus       199 ~~~~~~~la~~~~~~g---~~~~A~~~~~~al~-~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  272 (425)
                      +....++++.++....   +..+.+.+++..++ -+|+ .-+..+.|+..+.+.|+|+.++.+.+..++..|++..+..
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~  109 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE  109 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            3455666666665543   34566777777775 3443 2455667777777777777777777777777776665543

>KOG0530|consensus

Probab=95.43  E-value=0.3  Score=42.25  Aligned_cols=164  Identities=13%  Similarity=0.077  Sum_probs=127.6

Q ss_pred             HHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHH-HHH
Q psy1863         146 LRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFL-QGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYV-KGK  220 (425)
Q Consensus       146 ~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~  220 (425)
                      .+...-+.|..+-..++   |.+-.+|...-.+... ..+..+-++++.+.+..+|.|..+|...-.+....|++. .-+
T Consensus        54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL  133 (318)
T KOG0530|consen   54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL  133 (318)
T ss_pred             hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence            34455667777777777   7776777666555544 456788899999999999999999999988888899888 889


Q ss_pred             HHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cC-----CHHHHHHHHHHH
Q psy1863         221 ELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI-TG-----DVEQASDVNENL  294 (425)
Q Consensus       221 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g-----~~~~A~~~~~~~  294 (425)
                      +..+.++..+..+..+|...-.+...-+.++.-+.+..+.++.+-.+-.+|...-.+... .|     ..+.-+.+..+ 
T Consensus       134 ef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~-  212 (318)
T KOG0530|consen  134 EFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKD-  212 (318)
T ss_pred             HHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHH-
Confidence            999999999999999999999999999999999999999999988777777654332222 12     23344567777 


Q ss_pred             HHhcCcchH--HHHHHHh
Q psy1863         295 LLEAVRNDA--LSQLHRE  310 (425)
Q Consensus       295 a~~~~p~~~--~~~l~~~  310 (425)
                      .+...|++.  |..|.-+
T Consensus       213 ~I~~vP~NeSaWnYL~G~  230 (318)
T KOG0530|consen  213 KILLVPNNESAWNYLKGL  230 (318)
T ss_pred             HHHhCCCCccHHHHHHHH
Confidence            888889887  6665443

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=95.24  E-value=0.43  Score=44.18  Aligned_cols=85  Identities=13%  Similarity=0.069  Sum_probs=65.6

Q ss_pred             HHHHHHcCCHHHHHHHHHhcc-----------cc----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q psy1863         142 AVTFLRMNDVSQAVDVLKSCD-----------EM----------TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS  200 (425)
Q Consensus       142 a~~~~~~g~~~~A~~~~~~~~-----------~~----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  200 (425)
                      |..++++++|..|..-|..++           |.          ...+-..|..||+..++.+-|+.+..+.+.++|.++
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f  262 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF  262 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence            556667777766666666665           11          112345788899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy1863         201 AAFVNLGNCAMAREDYVKGKELYVHA  226 (425)
Q Consensus       201 ~~~~~la~~~~~~g~~~~A~~~~~~a  226 (425)
                      .-+...|.|+..+.+|.+|-.-+.-+
T Consensus       263 rnHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  263 RNHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999987655444

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.22  E-value=0.054  Score=32.44  Aligned_cols=29  Identities=31%  Similarity=0.398  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy1863         235 EALYNLGLAHKHLNEYSDSLECFHKLQAI  263 (425)
Q Consensus       235 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  263 (425)
                      .++.++|.+|..+|++++|..++++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            45566666666666666666666666654

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.19  E-value=0.042  Score=32.94  Aligned_cols=36  Identities=17%  Similarity=0.092  Sum_probs=27.4

Q ss_pred             HHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHH
Q psy1863          15 IIGLIDESCICARNQDFKAALEKAKLASNKERVLIK   50 (425)
Q Consensus        15 ~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~   50 (425)
                      +..+...|..+..+|++++|+..+++++.+.+.+.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G   37 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLG   37 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhc
Confidence            356788899999999999999999999999876655

>KOG1310|consensus

Probab=95.12  E-value=0.11  Score=49.36  Aligned_cols=104  Identities=18%  Similarity=0.086  Sum_probs=81.9

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---cCHHHHHHHHHHHHhcCcCcHHHHHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAR---EDYVKGKELYVHALDNDATCIEALYN  239 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~  239 (425)
                      |...+....-|.--+..+....|+..|.+++...|.....+.+.+.++++.   |+.-.|+.-+..+++++|....+++.
T Consensus       371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~  450 (758)
T KOG1310|consen  371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFR  450 (758)
T ss_pred             hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHH
Confidence            333444444454455556778889999999999999988888888888765   56667888888888999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy1863         240 LGLAHKHLNEYSDSLECFHKLQAIVPS  266 (425)
Q Consensus       240 la~~~~~~g~~~~A~~~~~~al~~~p~  266 (425)
                      |+.++..++++.+|+++...+....|.
T Consensus       451 la~aL~el~r~~eal~~~~alq~~~Pt  477 (758)
T KOG1310|consen  451 LARALNELTRYLEALSCHWALQMSFPT  477 (758)
T ss_pred             HHHHHHHHhhHHHhhhhHHHHhhcCch
Confidence            999999999999999988877777773

>KOG2422|consensus

Probab=95.12  E-value=3.3  Score=40.24  Aligned_cols=152  Identities=16%  Similarity=0.142  Sum_probs=98.2

Q ss_pred             cCCHHHHHHHHHHHHhc------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----------------
Q psy1863         179 QGEVEQAEKMAEEACTA------------DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN-----------------  229 (425)
Q Consensus       179 ~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----------------  229 (425)
                      ...|++|...|.-+...            .|.+...+..++.++..+|+.+-|....++++-.                 
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR  330 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR  330 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence            34577887777777654            3677788889999999999988877777776632                 


Q ss_pred             ----CcCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHHH-----
Q psy1863         230 ----DATCIE---ALYNLGLAHKHLNEYSDSLECFHKLQAIVPS-MPEVLYQIASLYE-ITGDVEQASDVNENLL-----  295 (425)
Q Consensus       230 ----~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~-~~g~~~~A~~~~~~~a-----  295 (425)
                          .|.+-.   +++..-..+.+.|-+..|.++++-.++++|. +|-+...+..+|. +..+|.=-+++++. .     
T Consensus       331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~-~e~~n~  409 (665)
T KOG2422|consen  331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNE-PENMNK  409 (665)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHH-HHhhcc
Confidence                222222   2233334455678999999999999999997 7766555555543 34455544444444 3     


Q ss_pred             HhcCcchH-HHHHHHh--------hHHHHHHHHHHHHhhcCCchh
Q psy1863         296 LEAVRNDA-LSQLHRE--------MKHEAEKCILTSAKLIAPSIE  331 (425)
Q Consensus       296 ~~~~p~~~-~~~l~~~--------~~~~A~~~~~~a~~~~~~~~~  331 (425)
                      +..-|+.+ -..++..        +.+.|...+.+|++..|....
T Consensus       410 l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~vl~  454 (665)
T KOG2422|consen  410 LSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPLVLS  454 (665)
T ss_pred             HhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcHHHH
Confidence            23345555 2233333        467788888888888885443

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=94.97  E-value=0.067  Score=47.23  Aligned_cols=78  Identities=9%  Similarity=0.120  Sum_probs=43.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy1863         195 ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYN-LGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLY  272 (425)
Q Consensus       195 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  272 (425)
                      ..|+++..|...+..-...|-|.+-...|.++++.+|.+.+.|.. -+.-+...++++.+...|.++++.+|++|..|.
T Consensus       102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~  180 (435)
T COG5191         102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI  180 (435)
T ss_pred             cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence            345555555555555555555555555666666666665555543 233344455566666666666666665555443

>KOG1464|consensus

Probab=94.96  E-value=2.3  Score=37.17  Aligned_cols=112  Identities=11%  Similarity=0.136  Sum_probs=64.7

Q ss_pred             HHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---------------cchHHHHHHHHHHHHHcCCH
Q psy1863         118 YNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---------------EMTSSAATNLSFIYFLQGEV  182 (425)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---------------~~~~~~~~~lg~~~~~~g~~  182 (425)
                      |+-..+.++......+.-.....+|..++..|+|.+-.+++++.-               ....+++..-...|-.+.+-
T Consensus       128 YeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnN  207 (440)
T KOG1464|consen  128 YETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNN  207 (440)
T ss_pred             HHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhccc
Confidence            333445555555544444444567777777777777776666654               11223444445566666666


Q ss_pred             HHHHHHHHHHHhcCCC--CHHHHH----HHHHHHHHhcCHHHHHHHHHHHHhc
Q psy1863         183 EQAEKMAEEACTADTY--NSAAFV----NLGNCAMAREDYVKGKELYVHALDN  229 (425)
Q Consensus       183 ~~A~~~~~~al~~~p~--~~~~~~----~la~~~~~~g~~~~A~~~~~~al~~  229 (425)
                      .+-..+|++++.+..-  +|.+.-    .=|..+.+.|+|++|...|-.+.+.
T Consensus       208 KkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN  260 (440)
T KOG1464|consen  208 KKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN  260 (440)
T ss_pred             HHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence            6667777777665422  222211    1244566677777777777777765

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.96  E-value=0.047  Score=46.06  Aligned_cols=55  Identities=18%  Similarity=0.270  Sum_probs=27.2

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC
Q psy1863         178 LQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDAT  232 (425)
Q Consensus       178 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  232 (425)
                      ..|+.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|...|++.++++|.
T Consensus         7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~   61 (287)
T COG4976           7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE   61 (287)
T ss_pred             ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence            3444444455555555555544444555555444455555555555555555443

>KOG4014|consensus

Probab=94.92  E-value=1.5  Score=35.93  Aligned_cols=179  Identities=16%  Similarity=0.081  Sum_probs=109.5

Q ss_pred             cchhhHHHHHHHHHH-HHcCCHHHHHHHHHhcc--cchHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCCCCHHH
Q psy1863         131 SSLAQDLEINKAVTF-LRMNDVSQAVDVLKSCD--EMTSSAATNLSFIYFL-----QGEVEQAEKMAEEACTADTYNSAA  202 (425)
Q Consensus       131 ~~~~~~~~~~~a~~~-~~~g~~~~A~~~~~~~~--~~~~~~~~~lg~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~  202 (425)
                      ....++....+|..+ -.+.+|++|.++|+.--  ...+...+.+|..++.     .+++..|++.+..+..  .+.+.+
T Consensus        30 ~EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~a  107 (248)
T KOG4014|consen   30 EEKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQA  107 (248)
T ss_pred             ccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHH
Confidence            333445555556544 34568888888887765  5566777777776654     4578888888888776  456777


Q ss_pred             HHHHHHHHHHh-----cC--HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHH
Q psy1863         203 FVNLGNCAMAR-----ED--YVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP--SMPEVLYQ  273 (425)
Q Consensus       203 ~~~la~~~~~~-----g~--~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~  273 (425)
                      ..++|.++...     ++  ..+|..++.++..+.  +..+.++|...|+.-  .++       +....|  ..+..   
T Consensus       108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g--~~k-------~~t~ap~~g~p~~---  173 (248)
T KOG4014|consen  108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGG--KEK-------FKTNAPGEGKPLD---  173 (248)
T ss_pred             HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhcc--chh-------hcccCCCCCCCcc---
Confidence            77777776542     23  678888888887664  456666666655432  222       122233  22222   


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCcchH------HHHHHHh---hHHHHHHHHHHHHhhc
Q psy1863         274 IASLYEITGDVEQASDVNENLLLEAVRNDA------LSQLHRE---MKHEAEKCILTSAKLI  326 (425)
Q Consensus       274 la~~~~~~g~~~~A~~~~~~~a~~~~p~~~------~~~l~~~---~~~~A~~~~~~a~~~~  326 (425)
                      .+..+....+.+.|.++--+ +-++.--..      ++.+|.-   +.++|..+-.++.++.
T Consensus       174 ~~~~~~~~kDMdka~qfa~k-ACel~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~  234 (248)
T KOG4014|consen  174 RAELGSLSKDMDKALQFAIK-ACELDIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM  234 (248)
T ss_pred             hhhhhhhhHhHHHHHHHHHH-HHhcCChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence            22334445678888888888 777654333      2333332   7777887777776654

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=94.87  E-value=0.11  Score=48.67  Aligned_cols=122  Identities=14%  Similarity=0.035  Sum_probs=97.7

Q ss_pred             HHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHH
Q psy1863         145 FLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKE  221 (425)
Q Consensus       145 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  221 (425)
                      ....|+.-.|-.-+..++   |..|......+.+....|+|+.|...+.-+-..-.....+...+-...+.+|++++|..
T Consensus       299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s  378 (831)
T PRK15180        299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS  378 (831)
T ss_pred             HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence            345678877777666666   77787778889999999999999988877665555555566666677788999999999


Q ss_pred             HHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy1863         222 LYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS  266 (425)
Q Consensus       222 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  266 (425)
                      ..+..+...-+++++..--+.....+|-+++|..++++.+.++|.
T Consensus       379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~  423 (831)
T PRK15180        379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE  423 (831)
T ss_pred             HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence            999988877777887777777777889999999999999999873

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.85  E-value=0.054  Score=45.71  Aligned_cols=58  Identities=17%  Similarity=0.280  Sum_probs=42.1

Q ss_pred             HHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy1863         210 AMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM  267 (425)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  267 (425)
                      ....++.+-|.+.|.+++.+.|.....|+.+|....+.|+++.|...|++.++++|.+
T Consensus         5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            3456677777777777777777777777777777777777777777777777777754

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=94.80  E-value=0.68  Score=44.81  Aligned_cols=139  Identities=15%  Similarity=0.043  Sum_probs=105.6

Q ss_pred             HHcCCHHH-HHHHHHhcc---cchHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHH
Q psy1863         146 LRMNDVSQ-AVDVLKSCD---EMTSSAATN--LSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKG  219 (425)
Q Consensus       146 ~~~g~~~~-A~~~~~~~~---~~~~~~~~~--lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  219 (425)
                      +..+.... ++..+...+   +.++..+..  +...+...++...+.-....++..+|.+..+..+++......|....+
T Consensus        41 l~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~  120 (620)
T COG3914          41 LNAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLA  120 (620)
T ss_pred             hcccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHH
Confidence            33444443 555555444   445544322  577778889999999999999999999999999999998888877777


Q ss_pred             HHHHHH-HHhcCcCcHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy1863         220 KELYVH-ALDNDATCIEALYNL------GLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDV  284 (425)
Q Consensus       220 ~~~~~~-al~~~~~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  284 (425)
                      ...+.. +....|.+..+...+      +.....+|+..++.....++....|.++.+...+.....+...+
T Consensus       121 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~  192 (620)
T COG3914         121 LADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSW  192 (620)
T ss_pred             HHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccc
Confidence            666665 888889888776665      88888899999999999999999999988877777765544443

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=94.71  E-value=5.6  Score=40.37  Aligned_cols=161  Identities=17%  Similarity=0.110  Sum_probs=108.3

Q ss_pred             chhhHHHHHHHHHHH-HcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---
Q psy1863         132 SLAQDLEINKAVTFL-RMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTY---  198 (425)
Q Consensus       132 ~~~~~~~~~~a~~~~-~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---  198 (425)
                      .....+.+.+|.+++ ...+++.|..++.+++         .....+.+.++.++...+... |...+++.++....   
T Consensus        56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~  134 (608)
T PF10345_consen   56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGH  134 (608)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCc
Confidence            344667889999887 7889999999999997         123445667788888888777 99999999887544   


Q ss_pred             C-HHHHHHHH--HHHHHhcCHHHHHHHHHHHHhcC--cCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----
Q psy1863         199 N-SAAFVNLG--NCAMAREDYVKGKELYVHALDND--ATCIE----ALYNLGLAHKHLNEYSDSLECFHKLQAIVP----  265 (425)
Q Consensus       199 ~-~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~--~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p----  265 (425)
                      . ....+.+-  ......+++..|+..++......  +.++.    +....+.+....+..+++++..+++.....    
T Consensus       135 ~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~  214 (608)
T PF10345_consen  135 SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQL  214 (608)
T ss_pred             hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhccc
Confidence            2 22223332  22233379999999999998875  34433    233456677778888888888887744321    


Q ss_pred             ------CCHHHHHHHHH--HHHHcCCHHHHHHHHHH
Q psy1863         266 ------SMPEVLYQIAS--LYEITGDVEQASDVNEN  293 (425)
Q Consensus       266 ------~~~~~~~~la~--~~~~~g~~~~A~~~~~~  293 (425)
                            ....++..+-.  ++...|+++.+...+++
T Consensus       215 ~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~  250 (608)
T PF10345_consen  215 DPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQ  250 (608)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                  12334444443  45567887777666555

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG4814|consensus

Probab=94.65  E-value=1.2  Score=43.68  Aligned_cols=95  Identities=13%  Similarity=0.084  Sum_probs=81.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q psy1863         170 TNLSFIYFLQGEVEQAEKMAEEACTADTYN------SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLA  243 (425)
Q Consensus       170 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~  243 (425)
                      -+-|.-.++..+|..+++.|...+..-|.+      .....+++.||..+.+.|.|.+++++|-+.+|.++-....+-.+
T Consensus       358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~  437 (872)
T KOG4814|consen  358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQS  437 (872)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            345666788899999999999999876654      35578899999999999999999999999999999888888888


Q ss_pred             HHHcCCHHHHHHHHHHHHhhC
Q psy1863         244 HKHLNEYSDSLECFHKLQAIV  264 (425)
Q Consensus       244 ~~~~g~~~~A~~~~~~al~~~  264 (425)
                      ....|.-++|+.+..+.....
T Consensus       438 ~~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  438 FLAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             HHHhcchHHHHHHHHHHHhhh
Confidence            889999999999988876653

>KOG3807|consensus

Probab=94.53  E-value=3.5  Score=37.21  Aligned_cols=122  Identities=13%  Similarity=0.126  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----------------
Q psy1863         168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND-----------------  230 (425)
Q Consensus       168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------------  230 (425)
                      .-+.+-...++..+..+-++....+++++|..+.++..++.-  ..--..+|.+.++++++..                 
T Consensus       186 ~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~  263 (556)
T KOG3807|consen  186 PEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQH  263 (556)
T ss_pred             hHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccch
Confidence            334455556666777778888888999999988888877653  2233556777777776541                 


Q ss_pred             ------cCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Q psy1863         231 ------ATC--IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM--PEVLYQIASLYEITGDVEQASDVN  291 (425)
Q Consensus       231 ------~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~  291 (425)
                            ..+  ..+...++.|..++|+..+|++.++...+-.|-.  ..++-++...+..+.-|......+
T Consensus       264 da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL  334 (556)
T KOG3807|consen  264 EAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL  334 (556)
T ss_pred             hhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  111  2234578999999999999999999888777722  234455555555554444433333

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=94.44  E-value=2.4  Score=41.24  Aligned_cols=100  Identities=17%  Similarity=-0.015  Sum_probs=54.1

Q ss_pred             HHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCCCHHHHHHH------HHHHHH
Q psy1863         143 VTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEE-ACTADTYNSAAFVNL------GNCAMA  212 (425)
Q Consensus       143 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~l------a~~~~~  212 (425)
                      ..+...++...+...+...+   +.++.+..+||......|..-.+...+.. +....|.+......+      +.....
T Consensus        75 i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (620)
T COG3914          75 ILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKL  154 (620)
T ss_pred             hhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHH
Confidence            33344455544444444444   55666666666665555555544444443 555566665553333      555555


Q ss_pred             hcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863         213 REDYVKGKELYVHALDNDATCIEALYNLGL  242 (425)
Q Consensus       213 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~  242 (425)
                      .|+..++....+++....|.++.+...+..
T Consensus       155 l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~  184 (620)
T COG3914         155 LGRTAEAELALERAVDLLPKYPRVLGALMT  184 (620)
T ss_pred             hccHHHHHHHHHHHHHhhhhhhhhHhHHHH
Confidence            666666666666666666666554444333

>KOG2581|consensus

Probab=94.39  E-value=0.95  Score=41.77  Aligned_cols=129  Identities=14%  Similarity=0.130  Sum_probs=93.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhcc------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCC-HH
Q psy1863         140 NKAVTFLRMNDVSQAVDVLKSCD------------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD-----TYN-SA  201 (425)
Q Consensus       140 ~~a~~~~~~g~~~~A~~~~~~~~------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~-~~  201 (425)
                      .....+..++++.+|.++-...+            --.+..|+.+..+|...|+...-...+...+...     ... ..
T Consensus       131 Lv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qav  210 (493)
T KOG2581|consen  131 LVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAV  210 (493)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHH
Confidence            33444556789999988877665            2345678888888888998777666666555432     222 23


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhc--Cc--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy1863         202 AFVNLGNCAMAREDYVKGKELYVHALDN--DA--TCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMP  268 (425)
Q Consensus       202 ~~~~la~~~~~~g~~~~A~~~~~~al~~--~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  268 (425)
                      ..+.+-..|...+.|+.|-....+..--  +.  ..+..++.+|.+..-+++|..|.++|-.++...|+..
T Consensus       211 LiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~  281 (493)
T KOG2581|consen  211 LINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA  281 (493)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence            4556677888899999998887776521  11  2356678899999999999999999999999999743

>KOG2041|consensus

Probab=94.37  E-value=6.1  Score=39.41  Aligned_cols=137  Identities=15%  Similarity=0.140  Sum_probs=91.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcCHH
Q psy1863         140 NKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADT--YNSAAFVNLGNCAMAREDYV  217 (425)
Q Consensus       140 ~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~  217 (425)
                      ..|.+-.--|+|++|.++|-.+-..     -.--.++...|||-.-..+++..-.-+.  ....++.++|..+..+..|+
T Consensus       739 q~aei~~~~g~feeaek~yld~drr-----DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We  813 (1189)
T KOG2041|consen  739 QRAEISAFYGEFEEAEKLYLDADRR-----DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWE  813 (1189)
T ss_pred             HhHhHhhhhcchhHhhhhhhccchh-----hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555567888888777666311     1122345566666666655554322221  22467889999999999999


Q ss_pred             HHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863         218 KGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNEN  293 (425)
Q Consensus       218 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  293 (425)
                      +|.++|.+.-..        -++..+++....|++-    +.....-|++...+-.+|..+...|.-++|.+.|-+
T Consensus       814 ~A~~yY~~~~~~--------e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  814 EAAKYYSYCGDT--------ENQIECLYRLELFGEL----EVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR  877 (1189)
T ss_pred             HHHHHHHhccch--------HhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence            999998875322        3456677777666653    334455688888888899999999999999988876

>KOG2041|consensus

Probab=94.17  E-value=6.8  Score=39.12  Aligned_cols=140  Identities=14%  Similarity=0.115  Sum_probs=73.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE  214 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  214 (425)
                      .+.+.++|..+..+..+++|.++|...-     -.-++..+++...+|++-..    ....-|++...+-.+|..+...|
T Consensus       796 e~A~r~ig~~fa~~~~We~A~~yY~~~~-----~~e~~~ecly~le~f~~LE~----la~~Lpe~s~llp~~a~mf~svG  866 (1189)
T KOG2041|consen  796 EDAFRNIGETFAEMMEWEEAAKYYSYCG-----DTENQIECLYRLELFGELEV----LARTLPEDSELLPVMADMFTSVG  866 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcc-----chHhHHHHHHHHHhhhhHHH----HHHhcCcccchHHHHHHHHHhhc
Confidence            3445667777777777777777777662     12244555666555554333    23344666667777777777777


Q ss_pred             CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863         215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNEN  293 (425)
Q Consensus       215 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  293 (425)
                      --++|.+.|-+.-  .|.   +   .-..+..++++.+|.+.-++-  ..|.........+.-+...++.-+|++..++
T Consensus       867 MC~qAV~a~Lr~s--~pk---a---Av~tCv~LnQW~~avelaq~~--~l~qv~tliak~aaqll~~~~~~eaIe~~Rk  935 (1189)
T KOG2041|consen  867 MCDQAVEAYLRRS--LPK---A---AVHTCVELNQWGEAVELAQRF--QLPQVQTLIAKQAAQLLADANHMEAIEKDRK  935 (1189)
T ss_pred             hHHHHHHHHHhcc--CcH---H---HHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHhhcchHHHHHHhhh
Confidence            7777777664421  111   1   112333445556665554432  1122222222223333444555555555555

>KOG1463|consensus

Probab=94.13  E-value=4.3  Score=36.76  Aligned_cols=26  Identities=15%  Similarity=0.138  Sum_probs=16.1

Q ss_pred             HHHHhhHHhccccHHHHHHHHHHhhH
Q psy1863          18 LIDESCICARNQDFKAALEKAKLASN   43 (425)
Q Consensus        18 l~~~~~~~~~~g~~~~A~~~~~~a~~   43 (425)
                      +.+.+.......+.+++...++..+.
T Consensus         7 ~~e~~~~~~~~~~~~~~~~il~~vl~   32 (411)
T KOG1463|consen    7 LLERAQNLVSVNQVEEAINILKSVLN   32 (411)
T ss_pred             HHHHHHHhcccchhhhhHHHHHHHhh
Confidence            35555556666666777776666554

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=94.10  E-value=0.79  Score=48.03  Aligned_cols=127  Identities=17%  Similarity=0.186  Sum_probs=97.6

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCcCc---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy1863         205 NLGNCAMAREDYVKGKELYVHALDNDATC---IEALYNLGLAHKHL----N---EYSDSLECFHKLQAIVPSMPEVLYQI  274 (425)
Q Consensus       205 ~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~l  274 (425)
                      ....++...+.|+.|+..|++.-...|..   .++.+..|.....+    |   .+++|+..|++. .-.|.-|--|...
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  558 (932)
T PRK13184        480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGK  558 (932)
T ss_pred             cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhH
Confidence            34567788899999999999999999876   45777888877642    3   477888888764 3456677788999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhcCcchH-H--------HHHHHh---hHHHHHHHHHHHHhhcCCchhhH
Q psy1863         275 ASLYEITGDVEQASDVNENLLLEAVRNDA-L--------SQLHRE---MKHEAEKCILTSAKLIAPSIEDN  333 (425)
Q Consensus       275 a~~~~~~g~~~~A~~~~~~~a~~~~p~~~-~--------~~l~~~---~~~~A~~~~~~a~~~~~~~~~~~  333 (425)
                      |.+|..+|++++-+++|.- |++..|++| +        ..|-..   ....|..+.--++...|..+...
T Consensus       559 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  628 (932)
T PRK13184        559 ALVYQRLGEYNEEIKSLLL-ALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSR  628 (932)
T ss_pred             HHHHHHhhhHHHHHHHHHH-HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccch
Confidence            9999999999999999999 999999988 2        222222   55667777777888888776543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.99  E-value=3.4  Score=39.79  Aligned_cols=132  Identities=16%  Similarity=0.126  Sum_probs=75.7

Q ss_pred             HHHHHHcCCHHHHHHHHH--hcccch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHH
Q psy1863         142 AVTFLRMNDVSQAVDVLK--SCDEMT-SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVK  218 (425)
Q Consensus       142 a~~~~~~g~~~~A~~~~~--~~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  218 (425)
                      -......|+++++.....  +.+|.- ..-...++..+..+|-++.|+.+..        ++...+.|+   .+.|+.+.
T Consensus       268 fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFeLA---l~lg~L~~  336 (443)
T PF04053_consen  268 FKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------DPDHRFELA---LQLGNLDI  336 (443)
T ss_dssp             HHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHHH---HHCT-HHH
T ss_pred             HHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhHHH---HhcCCHHH
Confidence            345567788888766665  223322 3335566777777888887776542        345555544   56788888


Q ss_pred             HHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy1863         219 GKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEA  298 (425)
Q Consensus       219 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~  298 (425)
                      |.+..+     ..+++..|..||.....+|+++-|..+|.++-        -+..|..+|...|+.+.=...... +...
T Consensus       337 A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~-a~~~  402 (443)
T PF04053_consen  337 ALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKI-AEER  402 (443)
T ss_dssp             HHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHH-HHHT
T ss_pred             HHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHH-HHHc
Confidence            776533     23467788888888888888888888887652        233455566666766554444444 4433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2422|consensus

Probab=93.95  E-value=5.2  Score=38.93  Aligned_cols=152  Identities=14%  Similarity=0.047  Sum_probs=102.9

Q ss_pred             CCHHHHHHHHHhcc---------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------
Q psy1863         149 NDVSQAVDVLKSCD---------------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA------------------  195 (425)
Q Consensus       149 g~~~~A~~~~~~~~---------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------  195 (425)
                      .-|++|...|.-+.               |-+...+..++.+...+|+.+-|....++++=.                  
T Consensus       252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL  331 (665)
T KOG2422|consen  252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL  331 (665)
T ss_pred             hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence            45566666665554               778899999999999999999888887777632                  


Q ss_pred             ---CCCCHHH---HHHHHHHHHHhcCHHHHHHHHHHHHhcCcC-cHHHHHHHHHHH-HHcCCHHHHHHHHHHHH-----h
Q psy1863         196 ---DTYNSAA---FVNLGNCAMAREDYVKGKELYVHALDNDAT-CIEALYNLGLAH-KHLNEYSDSLECFHKLQ-----A  262 (425)
Q Consensus       196 ---~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~la~~~-~~~g~~~~A~~~~~~al-----~  262 (425)
                         .|.|-..   ++..-....+.|-+.-|.++++-.++++|. +|.+...+-.+| .+..+|+==++.++..-     .
T Consensus       332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~  411 (665)
T KOG2422|consen  332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS  411 (665)
T ss_pred             cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence               1333322   233344456789999999999999999998 777666555555 45667776666666552     2


Q ss_pred             hCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcCcch
Q psy1863         263 IVPSMPEVLYQIASLYEITGD---VEQASDVNENLLLEAVRND  302 (425)
Q Consensus       263 ~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~a~~~~p~~  302 (425)
                      ..|+.+. -..+|..|.....   -..|...+.+ |+...|.-
T Consensus       412 ~~PN~~y-S~AlA~f~l~~~~~~~rqsa~~~l~q-Al~~~P~v  452 (665)
T KOG2422|consen  412 QLPNFGY-SLALARFFLRKNEEDDRQSALNALLQ-ALKHHPLV  452 (665)
T ss_pred             hcCCchH-HHHHHHHHHhcCChhhHHHHHHHHHH-HHHhCcHH
Confidence            3343322 2345555555544   5778889999 99988853

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.72  E-value=3.2  Score=33.82  Aligned_cols=111  Identities=15%  Similarity=0.177  Sum_probs=81.3

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHhcc-----cch--HHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCCCHHHHHH
Q psy1863         134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD-----EMT--SSAATNLSFIYFLQGEVEQAEKMAEEAC-TADTYNSAAFVN  205 (425)
Q Consensus       134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~-----~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~  205 (425)
                      ..-..+..|.+....|+...|+..|.++-     |.-  -.+...-+.++...|-|++-....+..- ..+|--..+.-.
T Consensus        93 pvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEA  172 (221)
T COG4649          93 PVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREA  172 (221)
T ss_pred             hHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHH
Confidence            33344778999999999999999999987     322  2445566778888999998766555432 234555567788


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q psy1863         206 LGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHK  245 (425)
Q Consensus       206 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  245 (425)
                      ||..-.+.|++.+|.+.|.+... +...+....+.+.+.+
T Consensus       173 LglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml  211 (221)
T COG4649         173 LGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML  211 (221)
T ss_pred             HhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence            99999999999999999999886 4455555556655544

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=93.67  E-value=6.5  Score=37.18  Aligned_cols=165  Identities=15%  Similarity=-0.035  Sum_probs=109.4

Q ss_pred             HHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----
Q psy1863         158 LKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN-----  229 (425)
Q Consensus       158 ~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----  229 (425)
                      +++++   +..+.+|+.........++-+.|+...++++...|.   ....++.+|....+-+.-..+|+++.+.     
T Consensus       291 ~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~y  367 (660)
T COG5107         291 HNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKY  367 (660)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHH
Confidence            44444   777888888888888899999999999888877776   5566777777777766666666666532     


Q ss_pred             -------------CcCc-H-----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCC
Q psy1863         230 -------------DATC-I-----------EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASL-YEITGD  283 (425)
Q Consensus       230 -------------~~~~-~-----------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~  283 (425)
                                   +|.. +           .+|.-+-..-.+..-.+.|...|-++-+..-..+.++..-|.+ |...|+
T Consensus       368 s~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d  447 (660)
T COG5107         368 SMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGD  447 (660)
T ss_pred             hhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCC
Confidence                         1110 1           1222233333445567788888887755443344444433333 456789


Q ss_pred             HHHHHHHHHHHHHhcCcchH------HHHHHHh-hHHHHHHHHHHHHhhc
Q psy1863         284 VEQASDVNENLLLEAVRNDA------LSQLHRE-MKHEAEKCILTSAKLI  326 (425)
Q Consensus       284 ~~~A~~~~~~~a~~~~p~~~------~~~l~~~-~~~~A~~~~~~a~~~~  326 (425)
                      +.-|...|+- .+...|+++      +..|-.+ +-..|...|++++...
T Consensus       448 ~~ta~~ifel-Gl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~  496 (660)
T COG5107         448 RATAYNIFEL-GLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERL  496 (660)
T ss_pred             cchHHHHHHH-HHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHH
Confidence            9999999999 999999988      2223333 7778888888776543

>KOG0890|consensus

Probab=93.35  E-value=19  Score=41.47  Aligned_cols=107  Identities=8%  Similarity=0.086  Sum_probs=67.9

Q ss_pred             CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC-----------
Q psy1863         199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV-PS-----------  266 (425)
Q Consensus       199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~-----------  266 (425)
                      ....|...|.+....|+++.|....-+|.+..  -+.+....|...+..|+-..|+..+++.+..+ |+           
T Consensus      1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence            35667777777777777777777777776654  45667777777777777777877777777543 21           


Q ss_pred             -----CHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhcCcchH--HHHHH
Q psy1863         267 -----MPEVLYQIASLYEITGDV--EQASDVNENLLLEAVRNDA--LSQLH  308 (425)
Q Consensus       267 -----~~~~~~~la~~~~~~g~~--~~A~~~~~~~a~~~~p~~~--~~~l~  308 (425)
                           ...+...++.-....|++  ..-+..|.. +.+..|...  ++.+|
T Consensus      1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~-~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHD-AKAILPEWEDKHYHLG 1796 (2382)
T ss_pred             hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHH-HHHHcccccCceeeHH
Confidence                 012334444444555554  344566777 777777443  44444

>KOG1839|consensus

Probab=93.32  E-value=1  Score=47.87  Aligned_cols=130  Identities=17%  Similarity=0.112  Sum_probs=102.6

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHhcc-----------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------
Q psy1863         134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD-----------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA-------  195 (425)
Q Consensus       134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------  195 (425)
                      ....+..++..+...|+.++|+..-.++.           +.....+.+++...+..+....|...+.++..+       
T Consensus       972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge 1051 (1236)
T KOG1839|consen  972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGE 1051 (1236)
T ss_pred             HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCC
Confidence            35556788999999999999999988776           667788899999999999999999999998765       


Q ss_pred             -CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc--------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy1863         196 -DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDA--------TCIEALYNLGLAHKHLNEYSDSLECFHKLQAI  263 (425)
Q Consensus       196 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  263 (425)
                       .|.......+++.++...++++.|+.+.+.|+....        .....+..++..+..++++..|+...+....+
T Consensus      1052 ~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1052 DHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred             CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence             366667788999999999999999999999998632        12445566666666677776666666555443

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=93.22  E-value=0.19  Score=44.54  Aligned_cols=80  Identities=8%  Similarity=-0.068  Sum_probs=70.6

Q ss_pred             HHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhcCcc
Q psy1863         223 YVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQ-IASLYEITGDVEQASDVNENLLLEAVRN  301 (425)
Q Consensus       223 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~~a~~~~p~  301 (425)
                      |.++-...|+++..|...+....+.|-+.+-...|.++++.+|.+.+.|.. .+.-+...++++.+...|.+ ++.++|+
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~-glR~N~~  174 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLK-GLRMNSR  174 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHh-hhccCCC
Confidence            444555678899999999988889999999999999999999999999876 55567788999999999999 9999999


Q ss_pred             hH
Q psy1863         302 DA  303 (425)
Q Consensus       302 ~~  303 (425)
                      +|
T Consensus       175 ~p  176 (435)
T COG5191         175 SP  176 (435)
T ss_pred             Cc
Confidence            99

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=93.17  E-value=0.58  Score=43.33  Aligned_cols=92  Identities=10%  Similarity=0.033  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCH----------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q psy1863         169 ATNLSFIYFLQGEVEQAEKMAEEACTAD--------TYNS----------AAFVNLGNCAMAREDYVKGKELYVHALDND  230 (425)
Q Consensus       169 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~----------~~~~~la~~~~~~g~~~~A~~~~~~al~~~  230 (425)
                      -..-|..++++++|..|.--|..++++.        |..+          .+--.+..||..+++.+-|+....+.+.++
T Consensus       179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln  258 (569)
T PF15015_consen  179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN  258 (569)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence            3445677888999999999999998874        1111          124567888999999999999999999899


Q ss_pred             cCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863         231 ATCIEALYNLGLAHKHLNEYSDSLECFHKL  260 (425)
Q Consensus       231 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  260 (425)
                      |.++.-+...|.|+..+.+|.+|-..+--+
T Consensus       259 P~~frnHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  259 PSYFRNHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988888888888888888888887765443

>KOG1914|consensus

Probab=93.17  E-value=8.8  Score=37.20  Aligned_cols=66  Identities=12%  Similarity=0.080  Sum_probs=46.2

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN  229 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  229 (425)
                      |.+..+|+.|-.-+..+ -+++....|++.+...|..+.+|.......+..++|+.-.++|.+++..
T Consensus        17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk   82 (656)
T KOG1914|consen   17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK   82 (656)
T ss_pred             CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            66666777666666555 6777777777777777777777777777777777777777777777654

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.16  E-value=0.95  Score=40.22  Aligned_cols=79  Identities=15%  Similarity=0.130  Sum_probs=56.6

Q ss_pred             HHHHHHHHHhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q psy1863         151 VSQAVDVLKSCD-EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN  229 (425)
Q Consensus       151 ~~~A~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  229 (425)
                      |..-+....+++ .....++..++..+...|+++.++..+++.+..+|.+...|..+-..|...|+...|+..|++.-+.
T Consensus       137 f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         137 FDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            333343444444 4556677777777888888888888888888888888888888888888888888888877776653

>KOG3783|consensus

Probab=93.15  E-value=8.8  Score=37.15  Aligned_cols=70  Identities=10%  Similarity=0.046  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhccc-----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy1863         138 EINKAVTFLRMNDVSQAVDVLKSCDE-----MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLG  207 (425)
Q Consensus       138 ~~~~a~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  207 (425)
                      .+..|..+...|+.+.|+..+...++     -..-.++.+|.++..+.+|..|...+....+.+..+.-.|..++
T Consensus       270 ll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa  344 (546)
T KOG3783|consen  270 LLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFA  344 (546)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHH
Confidence            34557777777777778888877773     23445667788888888888888888888777665555554444

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.11  E-value=0.53  Score=34.38  Aligned_cols=53  Identities=13%  Similarity=0.073  Sum_probs=29.1

Q ss_pred             HHcCCHHHHHHHHHHHHhcCC----C-----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q psy1863         177 FLQGEVEQAEKMAEEACTADT----Y-----NSAAFVNLGNCAMAREDYVKGKELYVHALDN  229 (425)
Q Consensus       177 ~~~g~~~~A~~~~~~al~~~p----~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  229 (425)
                      ...|+|.+|++.+.+..+...    .     ...+..++|.++...|++++|+..+++++++
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            344555555555444443321    1     1234556666666667777777666666665

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=93.05  E-value=0.94  Score=39.74  Aligned_cols=64  Identities=16%  Similarity=0.123  Sum_probs=34.4

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy1863         207 GNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEV  270 (425)
Q Consensus       207 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  270 (425)
                      =..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|++.+...++.-|+.+.+
T Consensus       188 k~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a  251 (269)
T COG2912         188 KAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA  251 (269)
T ss_pred             HHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence            3344455555555555555555555555555555555555555555555555555555554443

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.00  E-value=0.47  Score=34.64  Aligned_cols=56  Identities=20%  Similarity=0.328  Sum_probs=41.4

Q ss_pred             HHHhcCHHHHHHHHHHHHhcCcC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy1863         210 AMAREDYVKGKELYVHALDNDAT---------CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP  265 (425)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  265 (425)
                      ..+.|+|.+|++.+.+.+.....         ...+..++|.++...|++++|+..+++++++..
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            35678899998888887765221         135667788888888888888888888887643

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=92.93  E-value=6.3  Score=34.89  Aligned_cols=188  Identities=13%  Similarity=0.063  Sum_probs=117.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcc-----------cchHHHHHHHHHHHHHcCCHHHHHHHH---HHHHhcC--CCCHHH
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCD-----------EMTSSAATNLSFIYFLQGEVEQAEKMA---EEACTAD--TYNSAA  202 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~---~~al~~~--p~~~~~  202 (425)
                      +.+|....+.+++++|+..|.+.+           .....+...++.+|...|++..--...   +.+....  |....+
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki   86 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI   86 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence            677888899999999999999988           334567789999999999886543332   2222221  222222


Q ss_pred             HHHHHHHH-HHhcCHHHHHHHHHHHHhcCcCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHH
Q psy1863         203 FVNLGNCA-MAREDYVKGKELYVHALDNDATC------IEALYNLGLAHKHLNEYSDSLECFHKLQAI------VPSMPE  269 (425)
Q Consensus       203 ~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~  269 (425)
                      ...+..-+ .....++.-+..+...++-....      ...-..+..++++.|+|.+|+......+.-      .|+-..
T Consensus        87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~  166 (421)
T COG5159          87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT  166 (421)
T ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence            22222221 12344566666666665542211      112245778889999999999987766543      233445


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CcchHHHHHHHh---------hHHHHHHHHHHHHhhcC
Q psy1863         270 VLYQIASLYEITGDVEQASDVNENLLLEA-----VRNDALSQLHRE---------MKHEAEKCILTSAKLIA  327 (425)
Q Consensus       270 ~~~~la~~~~~~g~~~~A~~~~~~~a~~~-----~p~~~~~~l~~~---------~~~~A~~~~~~a~~~~~  327 (425)
                      ++..=..+|....+..++...+.. |...     .|.-.-.++...         ++.-|..+|-++++-+.
T Consensus       167 vhllESKvyh~irnv~KskaSLTa-Art~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft  237 (421)
T COG5159         167 VHLLESKVYHEIRNVSKSKASLTA-ARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFT  237 (421)
T ss_pred             hhhhhHHHHHHHHhhhhhhhHHHH-HHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccc
Confidence            666667788888888887777766 5443     232222222221         88899999998887664

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=92.89  E-value=0.42  Score=27.71  Aligned_cols=21  Identities=14%  Similarity=0.407  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHH
Q psy1863         168 AATNLSFIYFLQGEVEQAEKM  188 (425)
Q Consensus       168 ~~~~lg~~~~~~g~~~~A~~~  188 (425)
                      .++.+|..+..+|++++|+..
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHH
Confidence            344555555555555555555

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG3616|consensus

Probab=92.74  E-value=12  Score=37.70  Aligned_cols=57  Identities=11%  Similarity=0.239  Sum_probs=35.3

Q ss_pred             HHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhh
Q psy1863         342 VQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVS  400 (425)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~  400 (425)
                      ++.-+...+.|+-.......+..+.+.|+..+|+..+.+..  .|.+|.|..+...+..
T Consensus      1312 idtak~qnykpil~kyva~yaa~li~~~d~aq~lal~~q~g--a~anpanfniyk~i~e 1368 (1636)
T KOG3616|consen 1312 IDTAKKQNYKPILDKYVALYAAHLIHEGDLAQALALLEQHG--APANPANFNIYKLIFE 1368 (1636)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhC--CCCCcccccHHHHHHH
Confidence            33333334444333333446777889999999999998873  5666777665555433

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=92.71  E-value=1.5  Score=46.15  Aligned_cols=98  Identities=12%  Similarity=0.123  Sum_probs=77.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHh----c---CHHHHHHHHHHHHhcCcCcHHHHHHHH
Q psy1863         172 LSFIYFLQGEVEQAEKMAEEACTADTYNS---AAFVNLGNCAMAR----E---DYVKGKELYVHALDNDATCIEALYNLG  241 (425)
Q Consensus       172 lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~~~~~~~~~~la  241 (425)
                      ...++.....|++|+..|++.....|+-.   ++.+..|.+...+    |   .+++|+.-|++.- -.|.-|--|...|
T Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  559 (932)
T PRK13184        481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKA  559 (932)
T ss_pred             CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHH
Confidence            34567777889999999999999888754   6678888877654    2   4667777776643 2455677788999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy1863         242 LAHKHLNEYSDSLECFHKLQAIVPSMPEV  270 (425)
Q Consensus       242 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~  270 (425)
                      .+|.++|++++-++++.-+++..|+.|..
T Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (932)
T PRK13184        560 LVYQRLGEYNEEIKSLLLALKRYSQHPEI  588 (932)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence            99999999999999999999999887753

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=92.68  E-value=0.19  Score=26.66  Aligned_cols=20  Identities=25%  Similarity=0.431  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHH
Q psy1863         169 ATNLSFIYFLQGEVEQAEKM  188 (425)
Q Consensus       169 ~~~lg~~~~~~g~~~~A~~~  188 (425)
                      ...+|.++...|++++|...
T Consensus         4 ~~~la~~~~~~G~~~eA~~~   23 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERL   23 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHH
Confidence            33444444444444444443

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=92.60  E-value=5.5  Score=33.43  Aligned_cols=54  Identities=20%  Similarity=0.210  Sum_probs=26.6

Q ss_pred             CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC----cHHHHHHHHHHHHHcCCHHHH
Q psy1863         199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDAT----CIEALYNLGLAHKHLNEYSDS  253 (425)
Q Consensus       199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~g~~~~A  253 (425)
                      ++...+.+|..|. ..+.++|+.++-+++++.+.    +++++..|+.++.++|+++.|
T Consensus       140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            3444444444433 44455555555555554221    255555555555555555554

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=92.13  E-value=11  Score=35.76  Aligned_cols=125  Identities=7%  Similarity=-0.014  Sum_probs=72.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcc---cch-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCD---EMT-----SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCA  210 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~---~~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (425)
                      ...|.++.+++++.+|.++|.++.   ...     .+++.+.-...+-+++.+.-.......-+..|..+....-.|...
T Consensus        10 c~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~   89 (549)
T PF07079_consen   10 CFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVA   89 (549)
T ss_pred             HHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            445777778888888888777776   111     123333333334455666665555555566676666666777777


Q ss_pred             HHhcCHHHHHHHHHHHHhcCcCcHHHH---------------HHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy1863         211 MAREDYVKGKELYVHALDNDATCIEAL---------------YNLGLAHKHLNEYSDSLECFHKLQAI  263 (425)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~~~~~~~~---------------~~la~~~~~~g~~~~A~~~~~~al~~  263 (425)
                      .+.|+|.+|+..+...-..-..+...|               ...+.++...|++.++...+++.+..
T Consensus        90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~  157 (549)
T PF07079_consen   90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER  157 (549)
T ss_pred             HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            777777777776665554422211111               13455556666666666666665543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=91.88  E-value=0.63  Score=26.96  Aligned_cols=20  Identities=10%  Similarity=0.155  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHhcCHHHHHHH
Q psy1863         203 FVNLGNCAMAREDYVKGKEL  222 (425)
Q Consensus       203 ~~~la~~~~~~g~~~~A~~~  222 (425)
                      ++.+|..+..+|++++|+..
T Consensus         4 ~y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    4 LYGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHH
Confidence            44445555555555555555

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.48  E-value=0.44  Score=33.07  Aligned_cols=35  Identities=11%  Similarity=0.085  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863          11 MEQEIIGLIDESCICARNQDFKAALEKAKLASNKE   45 (425)
Q Consensus        11 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~   45 (425)
                      +|.+...++..|+.+-..|+|++|+..+++|+..-
T Consensus         2 le~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l   36 (76)
T cd02681           2 LERDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLL   36 (76)
T ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            57788999999999999999999999999998755

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=91.40  E-value=0.82  Score=41.03  Aligned_cols=62  Identities=19%  Similarity=0.126  Sum_probs=37.4

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH
Q psy1863         185 AEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKH  246 (425)
Q Consensus       185 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  246 (425)
                      |..+|.+|+.+.|.+...++.+|.++...|+.-.|+-+|-+++......+.+..|+...+.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            45666666666666666666666666666666666666666665543345566666665555

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.37  E-value=1.4  Score=39.12  Aligned_cols=63  Identities=19%  Similarity=0.210  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy1863         234 IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLE  297 (425)
Q Consensus       234 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~  297 (425)
                      ..++..++..+...|+++.++..+++.+..+|-+...|..+-..|...|+...|+..|++ ..+
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~-l~~  215 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQ-LKK  215 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHH-HHH
Confidence            556777888888888888888888888888888888888888888888888888888888 444

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=91.35  E-value=1.7  Score=38.13  Aligned_cols=74  Identities=14%  Similarity=-0.069  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHH
Q psy1863         167 SAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNL  240 (425)
Q Consensus       167 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l  240 (425)
                      ....++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.+.|.+.-|++.++..++..|+.+.+-.-.
T Consensus       182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir  255 (269)
T COG2912         182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIR  255 (269)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHH
Confidence            44556667788899999999999999999999999999999999999999999999999999999987665433

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=91.15  E-value=2.7  Score=29.21  Aligned_cols=54  Identities=15%  Similarity=0.108  Sum_probs=32.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH---HHHHHcCCHHHHHHHHHH
Q psy1863         240 LGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIA---SLYEITGDVEQASDVNEN  293 (425)
Q Consensus       240 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la---~~~~~~g~~~~A~~~~~~  293 (425)
                      -|.-++...+.++|+..+.++++..++.+.-+..+|   .+|...|++++.+.+--.
T Consensus        12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~   68 (80)
T PF10579_consen   12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ   68 (80)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445666667777777777777666555444333   456666777766665443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=90.98  E-value=0.98  Score=40.51  Aligned_cols=62  Identities=13%  Similarity=0.149  Sum_probs=33.3

Q ss_pred             HHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy1863         219 GKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI  280 (425)
Q Consensus       219 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  280 (425)
                      |..+|.+|+.+.|++...++.+|.++...|+.=.|+=+|-+++-.....+.+..++...+.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            44556666666666666666666666666666566655555554443345555555555555

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=90.72  E-value=0.47  Score=25.08  Aligned_cols=22  Identities=14%  Similarity=0.012  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Q psy1863         236 ALYNLGLAHKHLNEYSDSLECF  257 (425)
Q Consensus       236 ~~~~la~~~~~~g~~~~A~~~~  257 (425)
                      +...+|.++...|++++|...+
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Confidence            3444555555555555555444

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=90.71  E-value=16  Score=34.81  Aligned_cols=31  Identities=10%  Similarity=-0.049  Sum_probs=16.5

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEAC  193 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  193 (425)
                      |..+......|...++.+++.+|+..+..--
T Consensus        76 ~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~  106 (549)
T PF07079_consen   76 GKSAYLPLFKALVAYKQKEYRKALQALSVWK  106 (549)
T ss_pred             CCchHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            4444555555555555555555555554433

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1538|consensus

Probab=90.67  E-value=8.5  Score=38.11  Aligned_cols=51  Identities=8%  Similarity=0.068  Sum_probs=32.4

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863         207 GNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKL  260 (425)
Q Consensus       207 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  260 (425)
                      ...+...++|++|....++--+.-   +.+++..|..+....+|++|.+.|.++
T Consensus       780 VqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  780 VQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKA  830 (1081)
T ss_pred             hhheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence            344556777888776655433322   446666777777777777777776654

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=90.61  E-value=4.1  Score=34.17  Aligned_cols=55  Identities=22%  Similarity=0.300  Sum_probs=31.7

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHH
Q psy1863         232 TCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS----MPEVLYQIASLYEITGDVEQA  287 (425)
Q Consensus       232 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A  287 (425)
                      +++...+.+|..|. ..+.++|+..+.+++++.+.    +++++..|+.++..+|+++.|
T Consensus       139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            34555556665554 33556666666666665432    355666666666666666655

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=90.60  E-value=12  Score=33.28  Aligned_cols=34  Identities=18%  Similarity=0.324  Sum_probs=19.5

Q ss_pred             CCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhc
Q psy1863         264 VPSMPEVLYQIAS-LYEITGDVEQASDVNENLLLEA  298 (425)
Q Consensus       264 ~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~~a~~~  298 (425)
                      .|...+.+...+. .|...++...|...+.. ..+.
T Consensus       136 ~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~-f~~~  170 (260)
T PF04190_consen  136 YPSEADLFIARAVLQYLCLGNLRDANELFDT-FTSK  170 (260)
T ss_dssp             SS--HHHHHHHHHHHHHHTTBHHHHHHHHHH-HHHH
T ss_pred             CCcchhHHHHHHHHHHHHhcCHHHHHHHHHH-HHHH
Confidence            4455555555444 36667888888876666 4443

; PDB: 3LKU_E 2WPV_G.

>KOG1464|consensus

Probab=90.36  E-value=12  Score=32.94  Aligned_cols=180  Identities=13%  Similarity=0.084  Sum_probs=105.4

Q ss_pred             cCCHHHHHHHHHhcc---c----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCC-HHHHHHHHHHHHHhc
Q psy1863         148 MNDVSQAVDVLKSCD---E----MTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD-----TYN-SAAFVNLGNCAMARE  214 (425)
Q Consensus       148 ~g~~~~A~~~~~~~~---~----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~-~~~~~~la~~~~~~g  214 (425)
                      ..+.++|+.-|.+++   +    ....++-.+..+++.+|+|++-...|.+.+..-     .+. ....+.+-..-....
T Consensus        40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~  119 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK  119 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence            347888999999988   2    234566777888999999999888888876431     111 122222222222233


Q ss_pred             CHHHHHHHHHHHHhc--CcCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------------CCHHHHHHHHH
Q psy1863         215 DYVKGKELYVHALDN--DATCI----EALYNLGLAHKHLNEYSDSLECFHKLQAIVP------------SMPEVLYQIAS  276 (425)
Q Consensus       215 ~~~~A~~~~~~al~~--~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------------~~~~~~~~la~  276 (425)
                      +.+--..+|+..+..  +..+.    .+...+|.+|+..|.|.+-...+++.-..-.            .-..+|..-..
T Consensus       120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ  199 (440)
T KOG1464|consen  120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ  199 (440)
T ss_pred             hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence            334444444444432  11222    2335688889888888877777666543321            11234444456


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcCcchH----HHHHHHh---------hHHHHHHHHHHHHhhcCC
Q psy1863         277 LYEITGDVEQASDVNENLLLEAVRNDA----LSQLHRE---------MKHEAEKCILTSAKLIAP  328 (425)
Q Consensus       277 ~~~~~g~~~~A~~~~~~~a~~~~p~~~----~~~l~~~---------~~~~A~~~~~~a~~~~~~  328 (425)
                      .|..+.+-.+-...|++ ++.+...-|    +-.+-.+         .+++|-.-|-++++-...
T Consensus       200 mYT~qKnNKkLK~lYeq-alhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDE  263 (440)
T KOG1464|consen  200 MYTEQKNNKKLKALYEQ-ALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDE  263 (440)
T ss_pred             hhhhhcccHHHHHHHHH-HHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccc
Confidence            67777777777788888 877654333    2222222         677777777777765543

>KOG4014|consensus

Probab=90.22  E-value=9.4  Score=31.49  Aligned_cols=147  Identities=16%  Similarity=0.172  Sum_probs=93.1

Q ss_pred             hHHHHHHHHHHHH-----cCCHHHHHHHHHhcc-cchHHHHHHHHHHHHHc-----C--CHHHHHHHHHHHHhcCCCCHH
Q psy1863         135 QDLEINKAVTFLR-----MNDVSQAVDVLKSCD-EMTSSAATNLSFIYFLQ-----G--EVEQAEKMAEEACTADTYNSA  201 (425)
Q Consensus       135 ~~~~~~~a~~~~~-----~g~~~~A~~~~~~~~-~~~~~~~~~lg~~~~~~-----g--~~~~A~~~~~~al~~~p~~~~  201 (425)
                      ++..+..|..++.     .++...|+..+..+- ...+.+...+|.++..-     +  +..+|.+++.++.++.  +..
T Consensus        68 ~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~  145 (248)
T KOG4014|consen   68 PKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGE  145 (248)
T ss_pred             cHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--Cch
Confidence            4444555654442     347889999998887 77888999999988762     2  3778999999987664  556


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy1863         202 AFVNLGNCAMAREDYVKGKELYVHALDNDAT--CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE  279 (425)
Q Consensus       202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  279 (425)
                      +.+.|...|+...  ++       +....|.  .+..   .+..+.-..+.+.|.++--++-+++  ++.+..++...|.
T Consensus       146 aCf~LS~m~~~g~--~k-------~~t~ap~~g~p~~---~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyk  211 (248)
T KOG4014|consen  146 ACFLLSTMYMGGK--EK-------FKTNAPGEGKPLD---RAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYK  211 (248)
T ss_pred             HHHHHHHHHhccc--hh-------hcccCCCCCCCcc---hhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHH
Confidence            6777776665432  22       2222331  1211   2233344567788888888877664  5667777777665


Q ss_pred             Hc----CCHHHHHHHHHHHHHhc
Q psy1863         280 IT----GDVEQASDVNENLLLEA  298 (425)
Q Consensus       280 ~~----g~~~~A~~~~~~~a~~~  298 (425)
                      .-    .+.++|..+-.+ +.++
T Consensus       212 lGDGv~Kde~~Aekyk~r-A~e~  233 (248)
T KOG4014|consen  212 LGDGVPKDEDQAEKYKDR-AKEI  233 (248)
T ss_pred             ccCCCCccHHHHHHHHHH-HHHH
Confidence            42    356667666666 5554

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=90.15  E-value=4.1  Score=38.44  Aligned_cols=55  Identities=20%  Similarity=0.200  Sum_probs=45.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcc-----------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCD-----------EMTSSAATNLSFIYFLQGEVEQAEKMAEEAC  193 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  193 (425)
                      +.+..++.-.|||..|++.++..-           +-...+++.+|.+|+.+++|.+|++.|...+
T Consensus       126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL  191 (404)
T PF10255_consen  126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL  191 (404)
T ss_pred             HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466778888999999999877664           4456678889999999999999999988876

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.12  E-value=0.62  Score=27.34  Aligned_cols=28  Identities=18%  Similarity=0.223  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy1863         236 ALYNLGLAHKHLNEYSDSLECFHKLQAI  263 (425)
Q Consensus       236 ~~~~la~~~~~~g~~~~A~~~~~~al~~  263 (425)
                      ++..||.+....++|++|+..|.+++.+
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3445555555555555555555555543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.07  E-value=0.61  Score=27.38  Aligned_cols=27  Identities=26%  Similarity=0.067  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1863         168 AATNLSFIYFLQGEVEQAEKMAEEACT  194 (425)
Q Consensus       168 ~~~~lg~~~~~~g~~~~A~~~~~~al~  194 (425)
                      ++..||.+-...++|++|+.-|.++++
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~   29 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALE   29 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            344455555555555555555555443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=89.80  E-value=20  Score=34.66  Aligned_cols=101  Identities=15%  Similarity=0.119  Sum_probs=53.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHH
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVK  218 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  218 (425)
                      ...+..+.++|-.+.|+..     ..+++..+.|+   ...|+++.|.+..+     ..+++..|..||...+.+|+++-
T Consensus       299 ~~i~~fL~~~G~~e~AL~~-----~~D~~~rFeLA---l~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~l  365 (443)
T PF04053_consen  299 QSIARFLEKKGYPELALQF-----VTDPDHRFELA---LQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIEL  365 (443)
T ss_dssp             HHHHHHHHHTT-HHHHHHH-----SS-HHHHHHHH---HHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHH
T ss_pred             HHHHHHHHHCCCHHHHHhh-----cCChHHHhHHH---HhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHH
Confidence            3445555666666666644     23344444433   45677776665443     23356677777777777777777


Q ss_pred             HHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863         219 GKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKL  260 (425)
Q Consensus       219 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  260 (425)
                      |..+|+++-.        +..+..+|.-.|+.+.=.+..+.+
T Consensus       366 Ae~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a  399 (443)
T PF04053_consen  366 AEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIA  399 (443)
T ss_dssp             HHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHH
Confidence            7777766432        234445555566554444433333

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=89.60  E-value=1.9  Score=29.92  Aligned_cols=53  Identities=17%  Similarity=0.114  Sum_probs=26.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcc------cchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCD------EMTSSAATNLSFIYFLQGEVEQAEKMAEE  191 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  191 (425)
                      +..|.-++...+.++|+..+++++      ++...++-.+..+|...|+|.+++.+...
T Consensus        10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~   68 (80)
T PF10579_consen   10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ   68 (80)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555665555555      22223333344445555555555554433

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.88  E-value=1.6  Score=30.10  Aligned_cols=40  Identities=13%  Similarity=0.087  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHH
Q psy1863          11 MEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIK   50 (425)
Q Consensus        11 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~   50 (425)
                      ||+....++..|+.+-.+|++++|+..+++++..=..+..
T Consensus         2 L~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~   41 (75)
T cd02682           2 LEEMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVK   41 (75)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            5677888999999999999999999999999886644444

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG2581|consensus

Probab=88.47  E-value=22  Score=33.32  Aligned_cols=101  Identities=16%  Similarity=0.154  Sum_probs=70.5

Q ss_pred             hhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC--C
Q psy1863         133 LAQDLEINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA--DTY--N  199 (425)
Q Consensus       133 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~--~  199 (425)
                      +++.+++-+..++-..|+...-...+...+         ...+...+.|=..|...+.|+.|-....+..--  ..+  .
T Consensus       167 i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~  246 (493)
T KOG2581|consen  167 IAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEW  246 (493)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHH
Confidence            345666666777777777665555554444         223444566677888888999998877776421  122  2


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc
Q psy1863         200 SAAFVNLGNCAMAREDYVKGKELYVHALDNDATC  233 (425)
Q Consensus       200 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  233 (425)
                      +..++.+|.+..-+++|..|.+++-+|+...|.+
T Consensus       247 ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  247 ARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             HHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence            3457788999999999999999999999998874

>KOG0890|consensus

Probab=88.46  E-value=13  Score=42.53  Aligned_cols=136  Identities=10%  Similarity=0.015  Sum_probs=92.6

Q ss_pred             CCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC--------
Q psy1863         129 AHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD-EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD-TY--------  198 (425)
Q Consensus       129 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~--------  198 (425)
                      .......+.++..|.+....|+++.|...+-.+. ...+.++...|...+..|+-..|+..+++.++.+ |+        
T Consensus      1664 ~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1664 NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred             cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence            3344567888899999999999999988877777 6678888899999999999999999999988665 22        


Q ss_pred             --CH------HHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCcCcHHHHHHHHHHHH------------HcCCHHH---H
Q psy1863         199 --NS------AAFVNLGNCAMARED--YVKGKELYVHALDNDATCIEALYNLGLAHK------------HLNEYSD---S  253 (425)
Q Consensus       199 --~~------~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~la~~~~------------~~g~~~~---A  253 (425)
                        ..      .+...++......|+  ...-+++|..+.+..|.....++.+|..|.            +.|++..   +
T Consensus      1744 p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~ 1823 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKA 1823 (2382)
T ss_pred             chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHH
Confidence              11      122233333333444  244577888888888877666666664442            2355555   5


Q ss_pred             HHHHHHHHhhC
Q psy1863         254 LECFHKLQAIV  264 (425)
Q Consensus       254 ~~~~~~al~~~  264 (425)
                      +-.|.+++..+
T Consensus      1824 ~~~~~~sl~yg 1834 (2382)
T KOG0890|consen 1824 IYFFGRALYYG 1834 (2382)
T ss_pred             HHHHHHHHHhc
Confidence            55555666544

>KOG0529|consensus

Probab=88.45  E-value=22  Score=33.34  Aligned_cols=96  Identities=16%  Similarity=0.028  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC----CHHHHHHH
Q psy1863         183 EQAEKMAEEACTADTYNSAAFVNLGNCAMARED--YVKGKELYVHALDNDATCIEALYNLGLAHKHLN----EYSDSLEC  256 (425)
Q Consensus       183 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g----~~~~A~~~  256 (425)
                      ++-+.+...++..+|+...+|+....++.+.+.  +..=+.+++++++.+|.+..+|...-.+.....    ...+=+++
T Consensus        92 d~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~f  171 (421)
T KOG0529|consen   92 DEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEF  171 (421)
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHH
Confidence            334455555556666666666666655554442  455555566666666655555544333332221    12344555


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHH
Q psy1863         257 FHKLQAIVPSMPEVLYQIASLY  278 (425)
Q Consensus       257 ~~~al~~~p~~~~~~~~la~~~  278 (425)
                      ..+++..++.+-.+|.....+.
T Consensus       172 tt~~I~~nfSNYsaWhyRs~lL  193 (421)
T KOG0529|consen  172 TTKLINDNFSNYSAWHYRSLLL  193 (421)
T ss_pred             HHHHHhccchhhhHHHHHHHHH
Confidence            5555555555555555554443

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=88.07  E-value=12  Score=35.24  Aligned_cols=60  Identities=13%  Similarity=0.063  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHH--HHHH--HHHHHHHcCCHHHHHHHHHHHHhc
Q psy1863         136 DLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSS--AATN--LSFIYFLQGEVEQAEKMAEEACTA  195 (425)
Q Consensus       136 ~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~--~~~~--lg~~~~~~g~~~~A~~~~~~al~~  195 (425)
                      +.....+..++..++|..|...+..+.   +....  .+..  .|..++..-++.+|.+.++..+..
T Consensus       132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            445677888999999999999998887   22222  3333  455567788999999999987765

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.91  E-value=0.97  Score=31.53  Aligned_cols=34  Identities=12%  Similarity=0.044  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863          12 EQEIIGLIDESCICARNQDFKAALEKAKLASNKE   45 (425)
Q Consensus        12 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~   45 (425)
                      +.+...++..|+.+-..|+|++|+..+.+|+..-
T Consensus         3 ~~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l   36 (77)
T cd02683           3 ELAAKEVLKRAVELDQEGRFQEALVCYQEGIDLL   36 (77)
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            4567889999999999999999999999998765

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=87.90  E-value=2.7  Score=37.23  Aligned_cols=58  Identities=12%  Similarity=0.052  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863         236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNEN  293 (425)
Q Consensus       236 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  293 (425)
                      .+...+..|...|.+.+|++..++++..+|-+...+..+-.++..+||--.+...|++
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer  338 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER  338 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence            3345577788999999999999999999999999999999999999999999888888

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=87.66  E-value=20  Score=31.90  Aligned_cols=140  Identities=13%  Similarity=0.023  Sum_probs=65.7

Q ss_pred             CCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy1863         129 AHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGN  208 (425)
Q Consensus       129 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  208 (425)
                      ..+.-..+++..+|..+.+.|++.+|..+|-..-.....+...+-......               -.|.....+...+.
T Consensus        84 ~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~---------------~~~~e~dlfi~RaV  148 (260)
T PF04190_consen   84 SYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK---------------GYPSEADLFIARAV  148 (260)
T ss_dssp             S-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH---------------TSS--HHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh---------------cCCcchhHHHHHHH
Confidence            344445778888999999999999888777654211111111111111122               23333444433333


Q ss_pred             -HHHHhcCHHHHHHHHHHHHhc----CcC-----------cHHHHH-HHHHHHHHcCC---HHHHHHHHHHHHhhCCCCH
Q psy1863         209 -CAMAREDYVKGKELYVHALDN----DAT-----------CIEALY-NLGLAHKHLNE---YSDSLECFHKLQAIVPSMP  268 (425)
Q Consensus       209 -~~~~~g~~~~A~~~~~~al~~----~~~-----------~~~~~~-~la~~~~~~g~---~~~A~~~~~~al~~~p~~~  268 (425)
                       .|...++...|...+...++.    +|.           .|...+ .+-..-...++   |..-.+.|...++.+|...
T Consensus       149 L~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~  228 (260)
T PF04190_consen  149 LQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSFK  228 (260)
T ss_dssp             HHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHTH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHHH
Confidence             356667777777766655544    321           121111 11111122233   3344455666666777777


Q ss_pred             HHHHHHHHHHHHcCC
Q psy1863         269 EVLYQIASLYEITGD  283 (425)
Q Consensus       269 ~~~~~la~~~~~~g~  283 (425)
                      .....+|..|.....
T Consensus       229 ~~L~~IG~~yFgi~~  243 (260)
T PF04190_consen  229 EYLDKIGQLYFGIQP  243 (260)
T ss_dssp             HHHHHHHHHHH---S
T ss_pred             HHHHHHHHHHCCCCC
Confidence            788888888877543

; PDB: 3LKU_E 2WPV_G.

>KOG0529|consensus

Probab=86.96  E-value=13  Score=34.77  Aligned_cols=96  Identities=11%  Similarity=0.022  Sum_probs=70.6

Q ss_pred             CHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHH
Q psy1863         150 DVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGE--VEQAEKMAEEACTADTYNSAAFVNLGNCAMA----REDYVKGK  220 (425)
Q Consensus       150 ~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~  220 (425)
                      -+++-+.+...++   |+...+|+....++.+.+.  +..=+...+++++.+|.+..+|...=.+...    .....+=+
T Consensus        90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El  169 (421)
T KOG0529|consen   90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL  169 (421)
T ss_pred             hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence            4555566666666   8888888888888887654  5788889999999999888776544333322    22356668


Q ss_pred             HHHHHHHhcCcCcHHHHHHHHHHHH
Q psy1863         221 ELYVHALDNDATCIEALYNLGLAHK  245 (425)
Q Consensus       221 ~~~~~al~~~~~~~~~~~~la~~~~  245 (425)
                      .+..+++..++++..+|.+...+..
T Consensus       170 ~ftt~~I~~nfSNYsaWhyRs~lL~  194 (421)
T KOG0529|consen  170 EFTTKLINDNFSNYSAWHYRSLLLS  194 (421)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHH
Confidence            8888999889999999988777665

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=86.91  E-value=38  Score=34.42  Aligned_cols=28  Identities=7%  Similarity=-0.134  Sum_probs=20.0

Q ss_pred             hhHHhccccHHHHHHHHHHhhHHHHHHH
Q psy1863          22 SCICARNQDFKAALEKAKLASNKERVLI   49 (425)
Q Consensus        22 ~~~~~~~g~~~~A~~~~~~a~~~~~~l~   49 (425)
                      ++.....|..+.|...+.++++.-..+.
T Consensus       308 ~l~~~~~~~~~ks~k~~~k~l~~i~~~~  335 (608)
T PF10345_consen  308 GLHNLYKGSMDKSEKFLEKALKQIEKLK  335 (608)
T ss_pred             HHHHhhccCchHHHHHHHHHHHHHHHhh
Confidence            4555667777799999999887664333

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=86.33  E-value=1.6  Score=29.67  Aligned_cols=33  Identities=24%  Similarity=0.235  Sum_probs=29.2

Q ss_pred             HHHHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863          13 QEIIGLIDESCICARNQDFKAALEKAKLASNKE   45 (425)
Q Consensus        13 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~   45 (425)
                      .+...++..|+.+-..|++++|++.+.+|+..-
T Consensus         3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l   35 (69)
T PF04212_consen    3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYL   35 (69)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            455779999999999999999999999998755

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.30  E-value=1.3  Score=30.66  Aligned_cols=33  Identities=12%  Similarity=-0.036  Sum_probs=29.8

Q ss_pred             HHHHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863          13 QEIIGLIDESCICARNQDFKAALEKAKLASNKE   45 (425)
Q Consensus        13 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~   45 (425)
                      .+.+.|+.+|+..-..|+|++|++.|..|++.-
T Consensus         4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~   36 (75)
T cd02680           4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELC   36 (75)
T ss_pred             HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHH
Confidence            467889999999999999999999999998755

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=86.28  E-value=3.6  Score=36.45  Aligned_cols=57  Identities=11%  Similarity=0.068  Sum_probs=38.3

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863         204 VNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKL  260 (425)
Q Consensus       204 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  260 (425)
                      ...+..|...|.+.+|+++.++++.++|-+...+..+-.++..+|+--.|++.|++.
T Consensus       283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            344555666777777777777777777766667777777777777766666666554

>PF12854 PPR_1: PPR repeat

Probab=85.84  E-value=2.2  Score=24.17  Aligned_cols=24  Identities=13%  Similarity=0.041  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHH
Q psy1863         201 AAFVNLGNCAMAREDYVKGKELYV  224 (425)
Q Consensus       201 ~~~~~la~~~~~~g~~~~A~~~~~  224 (425)
                      .+|..+...+.+.|+.++|.+.|+
T Consensus         8 ~ty~~lI~~~Ck~G~~~~A~~l~~   31 (34)
T PF12854_consen    8 VTYNTLIDGYCKAGRVDEAFELFD   31 (34)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHH
Confidence            344444444455555555544444

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=85.63  E-value=35  Score=32.76  Aligned_cols=148  Identities=13%  Similarity=0.093  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcc----cch-----HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhc------
Q psy1863         138 EINKAVTFLRMNDVSQAVDVLKSCD----EMT-----SSAATNLSFIYFLQGEV-------EQAEKMAEEACTA------  195 (425)
Q Consensus       138 ~~~~a~~~~~~g~~~~A~~~~~~~~----~~~-----~~~~~~lg~~~~~~g~~-------~~A~~~~~~al~~------  195 (425)
                      .-.+|..++..|+|+-|...|+.+.    .+.     +.+.-..|.+.+..+..       +....+++.++..      
T Consensus       211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~  290 (414)
T PF12739_consen  211 MRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSAL  290 (414)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhc
Confidence            3467999999999999999999887    111     22333445555555522       1333333333221      


Q ss_pred             -----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--Cc--C---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy1863         196 -----DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN--DA--T---CIEALYNLGLAHKHLNEYSDSLECFHKLQAI  263 (425)
Q Consensus       196 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~--~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  263 (425)
                           ......+....+.++...|.+.+|...+-+....  ..  .   .+-.+-..|.++              ..+..
T Consensus       291 ~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~--------------~~~~~  356 (414)
T PF12739_consen  291 PRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY--------------ASLRS  356 (414)
T ss_pred             cccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh--------------ccccc
Confidence                 1122344556666677778777776666555544  21  1   233334444444              11111


Q ss_pred             -CC--C-----CHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhcCc
Q psy1863         264 -VP--S-----MPEVL-YQIASLYEITGDVEQASDVNENLLLEAVR  300 (425)
Q Consensus       264 -~p--~-----~~~~~-~~la~~~~~~g~~~~A~~~~~~~a~~~~p  300 (425)
                       .|  .     ....+ ..-|.-|...|+...|..+|.. +.....
T Consensus       357 ~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~-a~~vY~  401 (414)
T PF12739_consen  357 NRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQ-ALQVYE  401 (414)
T ss_pred             CCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHhC
Confidence             11  1     01122 2335667888888888888888 776654

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>KOG1538|consensus

Probab=85.59  E-value=42  Score=33.61  Aligned_cols=218  Identities=15%  Similarity=0.073  Sum_probs=106.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcc-----------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCD-----------------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTY---  198 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~-----------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---  198 (425)
                      -.+|...+..=+++-|.+.|.+..                 ...|. -..++.++...|+|.+|.+.|.+.-..+.-   
T Consensus       589 ~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEm  667 (1081)
T KOG1538|consen  589 RELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DLLLADVFAYQGKFHEAAKLFKRSGHENRALEM  667 (1081)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHH
Confidence            345666666667777777776654                 11122 235677778888888888888763221110   


Q ss_pred             -CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcCcHHHHHHHHHHHHHcCCHHHHHHHHH----------HHHhhCC
Q psy1863         199 -NSAAFVNLGNCAMAREDYVKGKELYVHALDN--DATCIEALYNLGLAHKHLNEYSDSLECFH----------KLQAIVP  265 (425)
Q Consensus       199 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~----------~al~~~p  265 (425)
                       ...-.+.++.-++..|..++-....++--+-  +-..|.   ..|..+...|+.++|+...-          -+-+++.
T Consensus       668 yTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~  744 (1081)
T KOG1538|consen  668 YTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDK  744 (1081)
T ss_pred             HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcch
Confidence             1112344555566666555544444432211  111222   23555666777777776431          1112222


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchHHHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHH
Q psy1863         266 SMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNW  340 (425)
Q Consensus       266 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  340 (425)
                      ...+.+..++..+..+..+.-|.+.|.+ .-.      ...+-.+     ++.+|....++.    |...+..+..-..|
T Consensus       745 ~ere~l~~~a~ylk~l~~~gLAaeIF~k-~gD------~ksiVqlHve~~~W~eAFalAe~h----Pe~~~dVy~pyaqw  813 (1081)
T KOG1538|consen  745 AEREPLLLCATYLKKLDSPGLAAEIFLK-MGD------LKSLVQLHVETQRWDEAFALAEKH----PEFKDDVYMPYAQW  813 (1081)
T ss_pred             hhhhHHHHHHHHHhhccccchHHHHHHH-hcc------HHHHhhheeecccchHhHhhhhhC----ccccccccchHHHH
Confidence            3344445555555555555566666655 211      1111111     555555444333    22222111111122


Q ss_pred             HHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy1863         341 CVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD  382 (425)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  382 (425)
                      +.+...           ....-.+|.+.|+-.+|...+++..
T Consensus       814 LAE~Dr-----------FeEAqkAfhkAGr~~EA~~vLeQLt  844 (1081)
T KOG1538|consen  814 LAENDR-----------FEEAQKAFHKAGRQREAVQVLEQLT  844 (1081)
T ss_pred             hhhhhh-----------HHHHHHHHHHhcchHHHHHHHHHhh
Confidence            222111           1122356778888888888888874

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.23  E-value=1.7  Score=30.17  Aligned_cols=33  Identities=21%  Similarity=0.063  Sum_probs=29.5

Q ss_pred             HHHHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863          13 QEIIGLIDESCICARNQDFKAALEKAKLASNKE   45 (425)
Q Consensus        13 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~   45 (425)
                      .+...|+.+|+..-..|+|++|+.++..++..-
T Consensus         4 ~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~   36 (75)
T cd02684           4 EKAIALVVQAVKKDQRGDAAAALSLYCSALQYF   36 (75)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            366889999999999999999999999998755

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=85.13  E-value=2  Score=26.15  Aligned_cols=25  Identities=20%  Similarity=0.405  Sum_probs=22.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Q psy1863         358 EINKAVTFLRMNDVSQAVDVLKSCD  382 (425)
Q Consensus       358 ~~~la~~~~~~g~~~~A~~~~~~~~  382 (425)
                      .+.+|..|..+|+.+.|.+.++.+.
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl   26 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVI   26 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHH
Confidence            3578999999999999999999986

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF13041 PPR_2: PPR repeat family

Probab=85.10  E-value=5.7  Score=24.69  Aligned_cols=29  Identities=7%  Similarity=0.093  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q psy1863         201 AAFVNLGNCAMAREDYVKGKELYVHALDN  229 (425)
Q Consensus       201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  229 (425)
                      .+|..+-..+.+.|++++|.++|++..+.
T Consensus         4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~   32 (50)
T PF13041_consen    4 VTYNTLISGYCKAGKFEEALKLFKEMKKR   32 (50)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence            34444555555555555555555555543

>KOG0546|consensus

Probab=85.07  E-value=1.5  Score=39.91  Aligned_cols=70  Identities=21%  Similarity=0.232  Sum_probs=37.4

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy1863         204 VNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQ  273 (425)
Q Consensus       204 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  273 (425)
                      .+++.+-+..+.+..|+.....++..+++...+++..+..+....++++|++.++.+....|++..+...
T Consensus       279 ~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~  348 (372)
T KOG0546|consen  279 RNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEE  348 (372)
T ss_pred             cchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHH
Confidence            3445555555555555555555555555555555555555555555555555555555555555444333

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=84.84  E-value=2.4  Score=23.14  Aligned_cols=20  Identities=20%  Similarity=0.453  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHhcCcCcHHHH
Q psy1863         218 KGKELYVHALDNDATCIEAL  237 (425)
Q Consensus       218 ~A~~~~~~al~~~~~~~~~~  237 (425)
                      .|...|++++...|.++..|
T Consensus         5 ~~r~i~e~~l~~~~~~~~~W   24 (33)
T smart00386        5 RARKIYERALEKFPKSVELW   24 (33)
T ss_pred             HHHHHHHHHHHHCCCChHHH
Confidence            33333333333333333333

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=84.56  E-value=11  Score=33.29  Aligned_cols=60  Identities=22%  Similarity=0.167  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863         202 AFVNLGNCAMAREDYVKGKELYVHALDNDAT------CIEALYNLGLAHKHLNEYSDSLECFHKLQ  261 (425)
Q Consensus       202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al  261 (425)
                      ....+|..|+..|++++|.++|+.+......      ...+...+..|+...|+.++.+.+.-+.+
T Consensus       180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            3456677777777777777777777544221      14455667777777777777766655543

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=84.41  E-value=17  Score=28.27  Aligned_cols=49  Identities=16%  Similarity=0.125  Sum_probs=18.5

Q ss_pred             hcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863         213 REDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQ  261 (425)
Q Consensus       213 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  261 (425)
                      +|+-++--+.+....+....+|..+..+|.+|.+.|+..+|-+.+.+|-
T Consensus        99 ~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC  147 (161)
T PF09205_consen   99 QGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEAC  147 (161)
T ss_dssp             TT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            3333333334444333333334444444444544554444444444443

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=84.09  E-value=43  Score=32.54  Aligned_cols=173  Identities=13%  Similarity=0.043  Sum_probs=100.7

Q ss_pred             CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy1863         197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIAS  276 (425)
Q Consensus       197 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  276 (425)
                      |-+...+..+-.++...-++.-....+.+++... .+..+++.++.+|... ..++-...+++.++.+-++...-..|+.
T Consensus        63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~  140 (711)
T COG1747          63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD  140 (711)
T ss_pred             cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence            3344455555555555556666667777777664 4577888888888887 5577788888888888777777888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhc-CcchHHHHHHHhhHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhc
Q psy1863         277 LYEITGDVEQASDVNENLLLEA-VRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQ  355 (425)
Q Consensus       277 ~~~~~g~~~~A~~~~~~~a~~~-~p~~~~~~l~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (425)
                      .|.+ ++...+..+|.+ ++.. -|.-.        ...-.+.+.+.....|++.+.....-     ..+....-.....
T Consensus       141 ~yEk-ik~sk~a~~f~K-a~yrfI~~~q--------~~~i~evWeKL~~~i~dD~D~fl~l~-----~kiqt~lg~~~~~  205 (711)
T COG1747         141 KYEK-IKKSKAAEFFGK-ALYRFIPRRQ--------NAAIKEVWEKLPELIGDDKDFFLRLQ-----KKIQTKLGEGRGS  205 (711)
T ss_pred             HHHH-hchhhHHHHHHH-HHHHhcchhh--------hhhHHHHHHHHHHhccccHHHHHHHH-----HHHHHhhccchHH
Confidence            8777 888888889988 6643 22111        01112233444444444433222110     0000000000001


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q psy1863         356 DLEINKAVTFLRMNDVSQAVDVLKSCDEMTS  386 (425)
Q Consensus       356 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  386 (425)
                      .+.-.+-.-|....++++|+.+++.+.+...
T Consensus       206 Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~  236 (711)
T COG1747         206 VLMQDVYKKYSENENWTEAIRILKHILEHDE  236 (711)
T ss_pred             HHHHHHHHHhccccCHHHHHHHHHHHhhhcc
Confidence            1111233456677889999999987755443

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=83.88  E-value=11  Score=33.22  Aligned_cols=77  Identities=21%  Similarity=0.220  Sum_probs=56.7

Q ss_pred             HHHHHHHHHhcc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCHHHHHHH
Q psy1863         151 VSQAVDVLKSCD--EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTY------NSAAFVNLGNCAMAREDYVKGKEL  222 (425)
Q Consensus       151 ~~~A~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~  222 (425)
                      ...|...|++.-  .........+|..|+..|++++|.++|+.+......      ...+...+..|+...|+.+..+.+
T Consensus       161 L~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~  240 (247)
T PF11817_consen  161 LEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT  240 (247)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            345555555544  344556678999999999999999999999765422      235677888999999999988877


Q ss_pred             HHHHH
Q psy1863         223 YVHAL  227 (425)
Q Consensus       223 ~~~al  227 (425)
                      .-+.+
T Consensus       241 ~leLl  245 (247)
T PF11817_consen  241 SLELL  245 (247)
T ss_pred             HHHHh
Confidence            66554

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=83.83  E-value=2.3  Score=25.93  Aligned_cols=24  Identities=21%  Similarity=0.405  Sum_probs=13.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcc
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCD  162 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~  162 (425)
                      +.+|..|...|+.+.|..++++++
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl   26 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVI   26 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHH
Confidence            345555555555555555555554

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.78  E-value=2.2  Score=29.53  Aligned_cols=33  Identities=18%  Similarity=0.143  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863          13 QEIIGLIDESCICARNQDFKAALEKAKLASNKE   45 (425)
Q Consensus        13 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~   45 (425)
                      .+...|+.+|+..-..|++++|+..+.+|+..-
T Consensus         4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l   36 (75)
T cd02678           4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEYF   36 (75)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            456889999999999999999999999998755

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>PF12854 PPR_1: PPR repeat

Probab=83.60  E-value=3.5  Score=23.38  Aligned_cols=27  Identities=15%  Similarity=0.150  Sum_probs=16.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863         267 MPEVLYQIASLYEITGDVEQASDVNEN  293 (425)
Q Consensus       267 ~~~~~~~la~~~~~~g~~~~A~~~~~~  293 (425)
                      +..+|..+...|.+.|+.++|.+.|++
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            445566666666666666666666554

>PF13041 PPR_2: PPR repeat family

Probab=82.96  E-value=8.2  Score=23.95  Aligned_cols=28  Identities=11%  Similarity=0.201  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy1863         236 ALYNLGLAHKHLNEYSDSLECFHKLQAI  263 (425)
Q Consensus       236 ~~~~la~~~~~~g~~~~A~~~~~~al~~  263 (425)
                      +|..+-..+.+.|++++|.+.|++..+.
T Consensus         5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~   32 (50)
T PF13041_consen    5 TYNTLISGYCKAGKFEEALKLFKEMKKR   32 (50)
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence            4444555555555555555555555443

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=82.84  E-value=4  Score=22.18  Aligned_cols=30  Identities=10%  Similarity=0.216  Sum_probs=22.9

Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy1863         248 NEYSDSLECFHKLQAIVPSMPEVLYQIASL  277 (425)
Q Consensus       248 g~~~~A~~~~~~al~~~p~~~~~~~~la~~  277 (425)
                      |+.+.|...|++++...|.++..|...+..
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            467788888888888888888887766543

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=82.79  E-value=9.6  Score=32.44  Aligned_cols=62  Identities=8%  Similarity=-0.042  Sum_probs=53.9

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy1863         207 GNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMP  268 (425)
Q Consensus       207 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  268 (425)
                      ..-+.+.+...+|+...+.-++..|.+......+-.++.-.|++++|..-++-+-++.|++.
T Consensus         8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455           8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            34567788899999999999999999988888888999999999999999999988888754

>KOG0546|consensus

Probab=82.35  E-value=2  Score=39.10  Aligned_cols=108  Identities=14%  Similarity=0.015  Sum_probs=86.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhcc--------------cc--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy1863         140 NKAVTFLRMNDVSQAVDVLKSCD--------------EM--------TSSAATNLSFIYFLQGEVEQAEKMAEEACTADT  197 (425)
Q Consensus       140 ~~a~~~~~~g~~~~A~~~~~~~~--------------~~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  197 (425)
                      ..+...++.++++.|..-+.+++              ++        ......+++.+-+..+.+..|+.....++..++
T Consensus       227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~  306 (372)
T KOG0546|consen  227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDER  306 (372)
T ss_pred             ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccCh
Confidence            34566778888888877777765              11        123455678888889999999999888888889


Q ss_pred             CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHc
Q psy1863         198 YNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHL  247 (425)
Q Consensus       198 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  247 (425)
                      ....+++..+..+....++++|+..++.+....|++......+..+-...
T Consensus       307 s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~  356 (372)
T KOG0546|consen  307 SKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKK  356 (372)
T ss_pred             hhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHH
Confidence            99999999999999999999999999999999999887766555544433

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=82.25  E-value=2.5  Score=39.82  Aligned_cols=56  Identities=18%  Similarity=0.237  Sum_probs=30.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q psy1863         171 NLSFIYFLQGEVEQAEKMAEEACTAD---------TYNSAAFVNLGNCAMAREDYVKGKELYVHAL  227 (425)
Q Consensus       171 ~lg~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  227 (425)
                      .|..++.-.|||..|++.++.. +++         +-+..+++.+|-+|+.+++|.+|+..|...+
T Consensus       127 gLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL  191 (404)
T PF10255_consen  127 GLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL  191 (404)
T ss_pred             HHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555566666666665432 111         2223445556666666666666666666555

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=80.98  E-value=37  Score=29.63  Aligned_cols=26  Identities=27%  Similarity=0.404  Sum_probs=17.6

Q ss_pred             HHHHHHHHH-HhcCCHHHHHHHHHHHH
Q psy1863         357 LEINKAVTF-LRMNDVSQAVDVLKSCD  382 (425)
Q Consensus       357 ~~~~la~~~-~~~g~~~~A~~~~~~~~  382 (425)
                      +.++.+..| .-+|+.++|+++.+++.
T Consensus       170 l~LN~svF~yei~~~~~~A~~ia~~af  196 (236)
T PF00244_consen  170 LALNYSVFYYEILNDPEKAIEIAKQAF  196 (236)
T ss_dssp             HHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            444555544 55899999999888874

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.67  E-value=3.9  Score=28.28  Aligned_cols=33  Identities=24%  Similarity=0.208  Sum_probs=29.2

Q ss_pred             HHHHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863          13 QEIIGLIDESCICARNQDFKAALEKAKLASNKE   45 (425)
Q Consensus        13 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~   45 (425)
                      .....++..|+..-..|++++|+..+.+|+..-
T Consensus         4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l   36 (75)
T cd02656           4 QQAKELIKQAVKEDEDGNYEEALELYKEALDYL   36 (75)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            456779999999999999999999999998755

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>KOG0686|consensus

Probab=80.43  E-value=16  Score=34.16  Aligned_cols=96  Identities=17%  Similarity=0.097  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc--------CcH
Q psy1863         166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN---SAAFVNLGNCAMAREDYVKGKELYVHALDNDA--------TCI  234 (425)
Q Consensus       166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--------~~~  234 (425)
                      -.++..+|.-|..-|+++.|++.|.++-......   ...+.++-.+-...|+|..-..+-.++.+.-.        -.+
T Consensus       150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~  229 (466)
T KOG0686|consen  150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA  229 (466)
T ss_pred             HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence            4567778888888888888888888865554333   34466677777777887777776666665410        012


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863         235 EALYNLGLAHKHLNEYSDSLECFHKLQ  261 (425)
Q Consensus       235 ~~~~~la~~~~~~g~~~~A~~~~~~al  261 (425)
                      .+...-|.+.+.+++|..|..+|-.+.
T Consensus       230 kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  230 KLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            344555666667778888888876553

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=80.10  E-value=18  Score=30.90  Aligned_cols=60  Identities=12%  Similarity=-0.022  Sum_probs=53.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc
Q psy1863         174 FIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC  233 (425)
Q Consensus       174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  233 (425)
                      .-+...+...+|+...+.-++..|.+......+-..+.-.|+|++|..-++-+-++.|+.
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~   68 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD   68 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence            345677889999999999999999999988888899999999999999999999998876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	425
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		3e-10
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		6e-08
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		1e-06
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		3e-06
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		2e-04

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 63/122 (51%)
Query: 166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVH 225
           + A  NL   Y+ QG+ ++A +  ++A   D  ++ A+ NLGN    + DY +  E Y  
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 226 ALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVE 285
           AL+ D    EA YNLG A+    +Y +++E + K   + P   E  Y + + Y   GD +
Sbjct: 61  ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 286 QA 287
           +A
Sbjct: 121 EA 122

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 56/105 (53%)
Query: 165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYV 224
           ++ A  NL   Y+ QG+ ++A +  ++A   D  N+ A+ NLGN    + DY +  E Y 
Sbjct: 8   SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 225 HALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPE 269
            AL+ D    EA YNLG A+    +Y +++E + K   + P+  E
Sbjct: 68  KALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 53/102 (51%)
Query: 165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYV 224
           ++ A  NL   Y+ QG+ ++A +  ++A   D  N++A+ NLGN    + DY K  E Y 
Sbjct: 8   SAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQ 67
Query: 225 HALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266
            AL+ D    +A Y  G A+    +Y  ++E + K   + P+
Sbjct: 68  KALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPN 109

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 54/105 (51%)
Query: 165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYV 224
           ++ A  NL   Y+ QG+ ++A +  ++A      N+ A+ NLGN    + DY +  E Y 
Sbjct: 8   SAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 225 HALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPE 269
            AL+      EA YNLG A+    +Y +++E + K   + P+  E
Sbjct: 68  KALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAE 112

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYV 224
           ++ A  NL   Y+ QG+ ++A +  ++A   D  N+ A+ NLGN    + DY +  E Y 
Sbjct: 8   SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 225 HALDNDATCIEALYNLGLAHK 245
            AL+ D    EA  NLG A +
Sbjct: 68  KALELDPNNAEAKQNLGNAKQ 88

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	425
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-14
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	7e-14
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	7e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	8e-14
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-13
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	8e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-08
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-13
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-13
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-10
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-12
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-12
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	6e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	6e-12
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	9e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	9e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-11
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	8e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-09
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-10
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-09
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-04
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-10
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	6e-08
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-10
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-07
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-10
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-09
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-07
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	5e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-10
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	6e-10
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	3e-07
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-09
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-07
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-09
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	4e-09
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	9e-07
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	4e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	7e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	5e-09
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	6e-09
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	5e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-08
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-08
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-07
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	3e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-08
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	8e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-05
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	5e-08
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	6e-08
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-07
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-07
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	8e-07
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	7e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-04
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	3e-07
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	5e-07
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	6e-07
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-04
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	7e-07
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	8e-07
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	9e-07
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	3e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-06
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	4e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	6e-05
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-06
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	7e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-06
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-06
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	4e-06
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	4e-05
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	1e-05
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-05
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	3e-05
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	3e-05
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	5e-05
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	6e-05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	6e-05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-04
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	7e-05
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-04
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	8e-05
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	1e-04
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-04
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-04
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	3e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	3e-04
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	4e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	9e-04
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	5e-04
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	6e-04
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	7e-04

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 73.3 bits (179), Expect = 5e-14
 Identities = 30/160 (18%), Positives = 64/160 (40%), Gaps = 3/160 (1%)

Query: 139 INKAVTFLRMNDVSQAVDVLK---SCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA 195
            N A       ++ +AV + +         ++A +NL+ +   QG++++A    +EA   
Sbjct: 13  NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 72

Query: 196 DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLE 255
               + A+ N+GN     +D     + Y  A+  +    +A  NL   HK      +++ 
Sbjct: 73  SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIA 132

Query: 256 CFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLL 295
            +     + P  P+    +A   +I  D     +  + L+
Sbjct: 133 SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLV 172

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 72.5 bits (177), Expect = 7e-14
 Identities = 27/120 (22%), Positives = 57/120 (47%)

Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
           +  NL+ I   QG +E+A ++  +A       +AA  NL +    +    +    Y  A+
Sbjct: 11  SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 70

Query: 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
               T  +A  N+G   K + +   +L+C+ +   I P+  +    +AS+++ +G++ +A
Sbjct: 71  RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA 130

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 53.7 bits (128), Expect = 7e-08
 Identities = 34/210 (16%), Positives = 68/210 (32%), Gaps = 10/210 (4%)

Query: 140 NKAVTFLRMNDVSQAVDVLK---SCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD 196
           N A    +   + +A+   K         + A +N+        +V+ A +    A   +
Sbjct: 48  NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN 107

Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256
              + A  NL +      +  +    Y  AL       +A  NL    + + +++D  E 
Sbjct: 108 PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDER 167

Query: 257 FHKLQAIVP------SMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHRE 310
             KL +IV        +P V    + LY ++    +A     +  L   + + L +   E
Sbjct: 168 MKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKA-IAERHGNLCLDKINVLHKPPYE 226

Query: 311 MKHEAEKCILTSAKLIAPSIEDNFSNGYNW 340
              + +            S   N    +  
Sbjct: 227 HPKDLKLSDGRLRVGYVSSDFGNHPTSHLM 256

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 72.2 bits (177), Expect = 8e-14
 Identities = 21/138 (15%), Positives = 41/138 (29%), Gaps = 1/138 (0%)

Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
           A   L+      G+    E   +        +  A   LG     ++ + +   L   A 
Sbjct: 25  AWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQAS 84

Query: 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
           D           LG A +   +   +   + +   ++P  P +  Q+ +      D    
Sbjct: 85  DAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRAL 144

Query: 288 SDVNENLLLEAVRNDALS 305
            DV    +  AV     +
Sbjct: 145 -DVLSAQVRAAVAQGVGA 161

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 71.0 bits (174), Expect = 2e-13
 Identities = 16/110 (14%), Positives = 33/110 (30%)

Query: 178 LQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEAL 237
           +  +  +       A      +  A++ L +  +   D   G+      L       EA+
Sbjct: 1   MTADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV 60

Query: 238 YNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
             LG        ++++     +     P  P +   +    E  G  E A
Sbjct: 61  ARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAA 110

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 50.2 bits (120), Expect = 8e-07
 Identities = 23/151 (15%), Positives = 44/151 (29%), Gaps = 3/151 (1%)

Query: 139 INKAVTFLRMNDVSQAVDVLK---SCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA 195
           +  A   L M D +     ++   +       A   L  + + Q    +A  + ++A  A
Sbjct: 27  LMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA 86

Query: 196 DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLE 255
              +    + LG+              Y  A             L    + L ++     
Sbjct: 87  APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDV 146

Query: 256 CFHKLQAIVPSMPEVLYQIASLYEITGDVEQ 286
              +++A V      +   A L E     EQ
Sbjct: 147 LSAQVRAAVAQGVGAVEPFAFLSEDASAAEQ 177

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 40/276 (14%), Positives = 92/276 (33%), Gaps = 16/276 (5%)

Query: 28  NQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALS-- 85
           N DF  A  +  L  N  +  +K+  +    D         +     +   + +  L   
Sbjct: 122 NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181

Query: 86  QLHREMKHEAEKCILTSAKLIAPSIED---NFSNGYNWCVQSIRNSAHSSLAQDLEI--- 139
            ++    ++    +L+ A     S  D     +N        + +S  S+   D  +   
Sbjct: 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLREN 241

Query: 140 ------NKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT--NLSFIYFLQGEVEQAEKMAEE 191
                    +     N++  A  +L+    +  +  +   L+     +   ++  K  ++
Sbjct: 242 AALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQK 301

Query: 192 ACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYS 251
           A   +      + + G      +DY   KE +  A   +   +     L        +++
Sbjct: 302 AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFT 361

Query: 252 DSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
           +S   F++ +   P++PEV    A +    GD + A
Sbjct: 362 ESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA 397

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 22/162 (13%), Positives = 47/162 (29%), Gaps = 20/162 (12%)

Query: 139 INKAVTFLRMNDVSQAVDVLKSCDEMTSSAA---TNLSFIYFLQGEVEQAEKMAEEACTA 195
           I  A    +    +++            +     T  + I   +G+ + A K  + A   
Sbjct: 348 IQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407

Query: 196 DTYNSAAFVNLGNC----------------AMAREDYVKGKELYVHALDNDATCIEALYN 239
           +       V +G                   +  E +    +L   A + D    +A   
Sbjct: 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIG 467

Query: 240 LGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT 281
           L      + +  +++E F     +  +M E   Q  +  E  
Sbjct: 468 LAQLKLQMEKIDEAIELFEDSAILARTMDE-KLQATTFAEAA 508

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 22/113 (19%), Positives = 42/113 (37%)

Query: 149 NDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGN 208
            D++Q   +  S  +  +    N    +F      +A K  + A   D      + N+  
Sbjct: 8   PDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISA 67

Query: 209 CAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQ 261
           C ++  D  K  E    AL+      +AL     A++ L  ++D++     L 
Sbjct: 68  CYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLS 120

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 25/145 (17%), Positives = 48/145 (33%), Gaps = 6/145 (4%)

Query: 180 GEVEQAEKMAEEACTADTYN----SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIE 235
           G     E    +            +    N GN     +++ +  + Y +A++ D     
Sbjct: 1   GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60

Query: 236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA-SDVNENL 294
              N+   +    +    +E   K   I P   + L + AS  E  G+   A  D++   
Sbjct: 61  FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLS 120

Query: 295 LLEAVRNDALSQ-LHREMKHEAEKC 318
           L       ++   L R +  +A K 
Sbjct: 121 LNGDFDGASIEPMLERNLNKQAMKV 145

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 65.5 bits (160), Expect = 4e-13
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 2/110 (1%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
            L F  +  G+ + A+K+ +  C  D Y++  F+ LG C  +   Y +  + Y +    D
Sbjct: 23  ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82

Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPE--VLYQIASLY 278
                  ++    H  L +   +   F+  +A+  + P    L   A   
Sbjct: 83  INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAM 132

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 13/97 (13%), Positives = 28/97 (28%)

Query: 191 EACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEY 250
                          LG        +   ++++      D         LG   + L  Y
Sbjct: 9   MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLY 68

Query: 251 SDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
             +L+ +     +  + P   +  A  +   GD++ A
Sbjct: 69  EQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGA 105

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 68.7 bits (169), Expect = 7e-13
 Identities = 21/117 (17%), Positives = 44/117 (37%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
            L+   +  G+ E AE+   +    +  N+   + L +         +       A+  +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
               EA  NLG  +K   +  +++E +     + P   +    +A+     GD+E A
Sbjct: 64  PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 66.4 bits (163), Expect = 4e-12
 Identities = 30/155 (19%), Positives = 58/155 (37%), Gaps = 9/155 (5%)

Query: 139 INKAVTFLRMNDVSQAVDVLKSCDEMT------SSAATNLSFIYFLQGEVEQAEKMAEEA 192
           +  A    +  D   A    + C ++       +     LS I+F    ++++   +  A
Sbjct: 3   MELAHREYQAGDFEAA---ERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLA 59

Query: 193 CTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSD 252
              +   + A+ NLGN    R    +  E Y HAL      I+   NL  A     +   
Sbjct: 60  IKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG 119

Query: 253 SLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
           +++ +       P +  V   + +L +  G +E+A
Sbjct: 120 AVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEA 154

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 65.3 bits (160), Expect = 9e-12
 Identities = 28/152 (18%), Positives = 56/152 (36%), Gaps = 3/152 (1%)

Query: 139 INKAVTFLRMNDVSQAVDVLKSCDEM---TSSAATNLSFIYFLQGEVEQAEKMAEEACTA 195
           IN            +AV        +    +    NL+ +Y+ QG ++ A      A   
Sbjct: 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266

Query: 196 DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLE 255
             +   A+ NL N    +    + ++ Y  AL    T  ++L NL    +      +++ 
Sbjct: 267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR 326

Query: 256 CFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
            + K   + P        +AS+ +  G +++A
Sbjct: 327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 358

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 64.9 bits (159), Expect = 1e-11
 Identities = 24/151 (15%), Positives = 52/151 (34%), Gaps = 3/151 (1%)

Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEM---TSSAATNLSFIYFLQGEVEQAEKMAEEACTAD 196
           N    +     + +A++  +    +         NL+      G++E A +    A   +
Sbjct: 72  NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131

Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256
                   +LGN   A     + K  Y+ A++       A  NLG       E   ++  
Sbjct: 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH 191

Query: 257 FHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
           F K   + P+  +    + ++ +     ++A
Sbjct: 192 FEKAVTLDPNFLDAYINLGNVLKEARIFDRA 222

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.0 bits (149), Expect = 2e-10
 Identities = 29/151 (19%), Positives = 58/151 (38%), Gaps = 3/151 (1%)

Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT---NLSFIYFLQGEVEQAEKMAEEACTAD 196
           N A   +   D+  AV    S  +          +L  +    G +E+A+    +A    
Sbjct: 106 NLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165

Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256
              + A+ NLG    A+ +       +  A+  D   ++A  NLG   K    +  ++  
Sbjct: 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 225

Query: 257 FHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
           + +  ++ P+   V   +A +Y   G ++ A
Sbjct: 226 YLRALSLSPNHAVVHGNLACVYYEQGLIDLA 256

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 60.6 bits (148), Expect = 3e-10
 Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 3/147 (2%)

Query: 140 NKAVTFLRMNDVSQAVDVLK---SCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD 196
           N A  +     +  A+D  +           A  NL+     +G V +AE     A    
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301

Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256
             ++ +  NL N    + +  +   LY  AL+       A  NL    +   +  ++L  
Sbjct: 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361

Query: 257 FHKLQAIVPSMPEVLYQIASLYEITGD 283
           + +   I P+  +    + +  +   D
Sbjct: 362 YKEAIRISPTFADAYSNMGNTLKEMQD 388

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 59.5 bits (145), Expect = 7e-10
 Identities = 28/151 (18%), Positives = 55/151 (36%), Gaps = 3/151 (1%)

Query: 140 NKAVTFLRMNDVSQAVDVLK---SCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD 196
           +       +  + +A              + A +NL  ++  QGE+  A    E+A T D
Sbjct: 140 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 199

Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256
                A++NLGN       + +    Y+ AL           NL   +        +++ 
Sbjct: 200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDT 259

Query: 257 FHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
           + +   + P  P+    +A+  +  G V +A
Sbjct: 260 YRRAIELQPHFPDAYCNLANALKEKGSVAEA 290

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 65.5 bits (160), Expect = 1e-12
 Identities = 29/176 (16%), Positives = 50/176 (28%), Gaps = 22/176 (12%)

Query: 134 AQDLE--INKAVTFLRMNDVSQAVDVLK-------------------SCDEMTSSAATNL 172
            Q ++  + K    +      QAV   +                      E++S  AT L
Sbjct: 1   GQSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATEL 60

Query: 173 SFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDAT 232
           +  Y      ++A    +E       N           + R        +Y   L  +A 
Sbjct: 61  ALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD 120

Query: 233 CIEALYNLGLA-HKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
            + A   LG   +    +    LE  +K  +    M    Y+       T   E+A
Sbjct: 121 NLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKA 176

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 52.1 bits (125), Expect = 5e-08
 Identities = 15/134 (11%), Positives = 33/134 (24%), Gaps = 16/134 (11%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAF----------------VNLGNCAMARE 214
                    G+  QA     +    +   +  +                  L        
Sbjct: 9   QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR 68

Query: 215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQI 274
           +Y K    Y   L      ++ L           +  D+L  + K+  +          +
Sbjct: 69  NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFL 128

Query: 275 ASLYEITGDVEQAS 288
            + Y +T + E+  
Sbjct: 129 GNYYYLTAEQEKKK 142

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 2/127 (1%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTY--NSAAFVNLGNCAMAREDYVKGKELYVHALD 228
           N     + Q   E+A +   EA     Y   S  F NLG  ++  +   + KE +  +L 
Sbjct: 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR 169

Query: 229 NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQAS 288
            +         +        EY  + + +             L     L ++  D + A+
Sbjct: 170 LNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAA 229

Query: 289 DVNENLL 295
                L 
Sbjct: 230 SYGLQLK 236

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 23/120 (19%), Positives = 38/120 (31%), Gaps = 2/120 (1%)

Query: 170 TNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN 229
             L   Y  +G  EQA+    +A   D  ++ A   L        +     E Y  AL +
Sbjct: 41  IQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS 100

Query: 230 DATCIEALYNLGLAHKHLNEYSDSLECFHK--LQAIVPSMPEVLYQIASLYEITGDVEQA 287
           D+     L N G        Y ++ +   +     + P    V   +  +        QA
Sbjct: 101 DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 14/104 (13%), Positives = 34/104 (32%)

Query: 166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVH 225
           S    NL  +     +  QA++  E++   +    +  + + +      +YV  ++ Y  
Sbjct: 141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDL 200

Query: 226 ALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPE 269
                     +L       K   +   +     +L+ + P   E
Sbjct: 201 FAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 18/86 (20%), Positives = 31/86 (36%)

Query: 202 AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQ 261
           A++ LG   + R +  + K     AL+ D +  +A   L +  +   E   + E + K  
Sbjct: 39  AYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKAL 98

Query: 262 AIVPSMPEVLYQIASLYEITGDVEQA 287
           A       VL             E+A
Sbjct: 99  ASDSRNARVLNNYGGFLYEQKRYEEA 124

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 65.8 bits (161), Expect = 5e-12
 Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 41/225 (18%)

Query: 171 NLSFIYFLQGE-VEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN 229
            +   Y + G   E A +   +A T +     A++  G+      ++ +    Y  A   
Sbjct: 95  AVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL 154

Query: 230 DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA-- 287
              C   +  +GL +   N    +   F +  +I P  P V++++  +    G+ + A  
Sbjct: 155 MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEK 214

Query: 288 --------SDVNENLLLEAVRNDALSQL---HREMKH--EAEKCILTSAKLIAPSIEDNF 334
                        N +        L+ L    R++K   EA       A ++ P      
Sbjct: 215 WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY-HRQALVLIP----QN 269

Query: 335 SNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLK 379
           ++ Y+                            M +   AVD   
Sbjct: 270 ASTYS--------------------AIGYIHSLMGNFENAVDYFH 294

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 59.2 bits (144), Expect = 6e-10
 Identities = 21/160 (13%), Positives = 46/160 (28%), Gaps = 12/160 (7%)

Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMTSS---AATNLSFIYFLQGEVEQAEKMAEEACTAD 196
              + +   N+   A         +          +  + F  GE + AEK   +A    
Sbjct: 164 YIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223

Query: 197 TY---------NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHL 247
                            NLG+     + Y +  + +  AL            +G  H  +
Sbjct: 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLM 283

Query: 248 NEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
             + ++++ FH    +       +  +    E+     +A
Sbjct: 284 GNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEA 323

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 9/118 (7%), Positives = 37/118 (31%), Gaps = 1/118 (0%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
           +L+  ++   + +   K+       D ++++         +      +   L    +D  
Sbjct: 27  SLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY 86

Query: 231 ATCIEALYNLGLAHKHLNEYSDS-LECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
            +   + + +G  +  +   ++       K   +  +           + +  + +QA
Sbjct: 87  PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQA 144

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 1/106 (0%)

Query: 183 EQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL 242
           + +E +  E+      N    V+L        D+    +L    ++ D      L     
Sbjct: 5   KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIG 64

Query: 243 AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG-DVEQA 287
               LN+ ++     HKL  + PS P   + +   Y + G   E A
Sbjct: 65  TLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHA 110

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 13/127 (10%), Positives = 34/127 (26%), Gaps = 9/127 (7%)

Query: 170 TNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN 229
                 + ++ E +QA      A           + +G       +    +  +  AL  
Sbjct: 129 IAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188

Query: 230 DATCIEALYNLGLAHKHLNEYSDSLECFHK---------LQAIVPSMPEVLYQIASLYEI 280
                  ++ +G+      E+  + + F            +  V     +L  +  +   
Sbjct: 189 APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248

Query: 281 TGDVEQA 287
                +A
Sbjct: 249 LKKYAEA 255

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 13/131 (9%), Positives = 33/131 (25%), Gaps = 12/131 (9%)

Query: 140 NKAVTFLRMNDVSQAVDVLK------------SCDEMTSSAATNLSFIYFLQGEVEQAEK 187
              V   +  +   A                    +       NL  +     +  +A  
Sbjct: 198 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257

Query: 188 MAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHL 247
              +A      N++ +  +G       ++    + +  AL        ++  LG   +  
Sbjct: 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMY 317

Query: 248 NEYSDSLECFH 258
              S++     
Sbjct: 318 IGDSEAYIGAD 328

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 62.1 bits (151), Expect = 6e-12
 Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 2/108 (1%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
           + ++ ++ +G +E+AE      C  D YN    + L      +E + +  +LY  A    
Sbjct: 41  SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100

Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLY 278
                 +++ G     L     + ECF  +        E L   A  Y
Sbjct: 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN--DEKLKIKAQSY 146

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 50.2 bits (120), Expect = 9e-08
 Identities = 10/147 (6%), Positives = 42/147 (28%), Gaps = 4/147 (2%)

Query: 168 AATNLSFIYFLQGEVEQAEKMAE---EACTADTYNSAAFVNLGNCAMAREDYVKGKELYV 224
            + N++    +   V  A        +             +       +    + +  + 
Sbjct: 1   GSLNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFR 60

Query: 225 HALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDV 284
                D   ++ +  L   ++   ++  + + +    A+  +    ++            
Sbjct: 61  FLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAP 120

Query: 285 EQASDVNENLLLEAVRNDALSQLHREM 311
            +A +  E L+++   ++ L    +  
Sbjct: 121 LKAKECFE-LVIQHSNDEKLKIKAQSY 146

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.8 bits (162), Expect = 7e-12
 Identities = 78/549 (14%), Positives = 155/549 (28%), Gaps = 188/549 (34%)

Query: 5   EEKFERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIE 64
             K E M Q+ +  +          ++K  +   K    ++  ++           +N  
Sbjct: 72  LSKQEEMVQKFVEEVLR-------INYKFLMSPIK-TEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 65  LTFS--NINRKKNARAVRNDALSQLHRE-------MKHEAEKCILTSAKLIAPSIEDNFS 115
             F+  N++R +    +R  AL +L          +   + K  +     ++  ++    
Sbjct: 124 QVFAKYNVSRLQPYLKLRQ-ALLELRPAKNVLIDGVLG-SGKTWVALDVCLSYKVQCKMD 181

Query: 116 NGYNW-------------------CVQSIRNS---AHSSLAQDLEINKAVTFLR------ 147
               W                     Q   N    +  S    L I+     LR      
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Query: 148 --------MNDVS-----QAVDVLKSC------------DEMTSSAATNLSFIYFLQG-- 180
                   + +V       A ++  SC            D ++++  T++S  +      
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNL--SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 181 --EVEQ---------AEKMAEEACTADTYNSAAFVNLGNCAM---------AREDYVK-- 218
             EV+           + +  E  T          N    ++         A  D  K  
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLT---------TNPRRLSIIAESIRDGLATWDNWKHV 350

Query: 219 GKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS---MPEVLYQIA 275
             +     ++   + +  L           E ++  + F +L ++ P    +P +L  + 
Sbjct: 351 NCDKLTTIIE---SSLNVL-----------EPAEYRKMFDRL-SVFPPSAHIPTILLSLI 395

Query: 276 SLYEITGDVEQ-------ASDVNEN-----------LLLEAVRNDALSQLHREM--KHEA 315
               I  DV          S V +             L   V+ +    LHR +   +  
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455

Query: 316 EKCILTSAKLIAPSIEDN---------------------FSNGY---NWCVQSIRNS--- 348
            K   +    + P   D                      F   +    +  Q IR+    
Sbjct: 456 PKTFDSDD--LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513

Query: 349 --AHSSLA---QDLEINKAVTFLRMND------VSQAVDVLKSCDE-MTSSAATNLSFIY 396
             A  S+    Q L+  K   ++  ND      V+  +D L   +E +  S  T+L  I 
Sbjct: 514 WNASGSILNTLQQLKFYKP--YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571

Query: 397 FLVSSEFQY 405
            +   E  +
Sbjct: 572 LMAEDEAIF 580

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 64.2 bits (157), Expect = 9e-12
 Identities = 15/127 (11%), Positives = 34/127 (26%), Gaps = 3/127 (2%)

Query: 164 MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDY---VKGK 220
           M        +   F      +A ++  +       +   +     C      Y    K  
Sbjct: 1   MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60

Query: 221 ELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI 280
           E Y   ++            G       + S +++ +        +  ++  QI S +  
Sbjct: 61  ETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN 120

Query: 281 TGDVEQA 287
            G+   A
Sbjct: 121 KGNFPLA 127

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 27/158 (17%), Positives = 60/158 (37%), Gaps = 6/158 (3%)

Query: 136 DLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT---NLSFIYFLQGEVEQAEKMAEEA 192
           D+E   A    + N+ ++A++V    +    ++       +  Y+   + + A+K  E  
Sbjct: 4   DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETY 63

Query: 193 CTA---DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNE 249
            +        SA F   G   M +       + Y  A+D D T ++    +G    +   
Sbjct: 64  FSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN 123

Query: 250 YSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
           +  +++   K      + P+V Y++   Y    +  +A
Sbjct: 124 FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 56.1 bits (136), Expect = 4e-09
 Identities = 18/116 (15%), Positives = 39/116 (33%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
               I   +G+   A +  + A   DT     +  +G+    + ++    +     +   
Sbjct: 79  YYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT 138

Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQ 286
            T  +  Y LG A+ +  EY  +   F K+  + P++       A          +
Sbjct: 139 TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTK 194

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 52.3 bits (126), Expect = 8e-08
 Identities = 31/228 (13%), Positives = 59/228 (25%), Gaps = 36/228 (15%)

Query: 74  KNARAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSL 133
            +       A+          A+K I T    +  +     S  +               
Sbjct: 35  NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFE-------------- 78

Query: 134 AQDLEINKAVTFLRMNDVSQAVDVLK---SCDEMTSSAATNLSFIYFLQGEVEQAEKMAE 190
                       ++    S A+   +     D         +   ++ +G    A +  E
Sbjct: 79  ------YYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYME 132

Query: 191 EACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLN-- 248
           +     T +   F  LG      ++YVK    +V  L+              A+   +  
Sbjct: 133 KQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPD 192

Query: 249 -EYSDSLECFHKLQAIVPSMP--------EVLYQIASLYEITGDVEQA 287
            +   +   + KL  +             E    IA  Y I  D  +A
Sbjct: 193 TKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 16/154 (10%), Positives = 40/154 (25%), Gaps = 14/154 (9%)

Query: 140 NKAVTFLRMNDVSQAVDVLK---SCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD 196
                F    +   A+  ++               L   Y+   E  +A+    +     
Sbjct: 113 QIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK 172

Query: 197 TYNSAAFVNLGNC----------AMAREDYVKGKELYV-HALDNDATCIEALYNLGLAHK 245
                 ++                +A+  Y K  E+            IEA   +   + 
Sbjct: 173 PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232

Query: 246 HLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE 279
              +   +   +  + A+ P+  + +  +    E
Sbjct: 233 INRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 45/264 (17%), Positives = 92/264 (34%), Gaps = 10/264 (3%)

Query: 26  ARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALS 85
           A     + + + AK   +K+  L  +            ELTF+N +    A     + LS
Sbjct: 136 ATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLS 195

Query: 86  QLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTF 145
            L++      +K   +  K  A  + +   +  N   +     A          +  +  
Sbjct: 196 NLYKRSPESYDKADESFTK--AARLFEEQLDKNNEDEKLKEKLA------ISLEHTGIFK 247

Query: 146 LRMNDVSQAVDVLKSCDEMTSSAAT--NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAF 203
              ND   A + +K   E+     +   ++ I   + +  +     ++A   D+ NS+ +
Sbjct: 248 FLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVY 307

Query: 204 VNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI 263
            + G      ++Y +  + +  A + D   I     L       N++ D    F + +  
Sbjct: 308 YHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK 367

Query: 264 VPSMPEVLYQIASLYEITGDVEQA 287
            P  PEV    A +     D ++A
Sbjct: 368 FPEAPEVPNFFAEILTDKNDFDKA 391

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 64.4 bits (157), Expect = 3e-11
 Identities = 20/149 (13%), Positives = 42/149 (28%), Gaps = 12/149 (8%)

Query: 139 INKAVTFLRMNDVSQAVDVLKSCDEM---TSSAATNLSFIYFLQGEVEQAEKMAEEACTA 195
           I  A    R N       +                  + I   + + ++A K  + A   
Sbjct: 342 IQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401

Query: 196 DTYNSAAFVNLGNC---------AMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKH 246
           +      +V +                E++++   L   A   D    +A   L      
Sbjct: 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQ 461

Query: 247 LNEYSDSLECFHKLQAIVPSMPEVLYQIA 275
             +  +++  F +   +  +M E L  I 
Sbjct: 462 QEDIDEAITLFEESADLARTMEEKLQAIT 490

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 25/160 (15%), Positives = 50/160 (31%), Gaps = 9/160 (5%)

Query: 139 INKAVTFLRMNDVSQAVDVLKSCDE------MTSSAATNLSFIYFLQGEVEQAEKMAEEA 192
           I  A+     ND ++        D+        SS   +   + F+    +QA K  ++A
Sbjct: 274 IYMALIMADRNDSTEY---YNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKA 330

Query: 193 CTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSD 252
              D  N   ++ L   A     +   + L+  A        E            N++  
Sbjct: 331 KELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDK 390

Query: 253 SLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNE 292
           +L+ +     +   +  +   IA L      + +   V  
Sbjct: 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN 430

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 30/178 (16%), Positives = 52/178 (29%), Gaps = 18/178 (10%)

Query: 199 NSAAFVNLGNCAMAREDYVKGKELYVHA--LDNDATCIEALYNLGLAHKHLNEYSDSLEC 256
            + A  + GN     + Y    + Y  A  L  D        NL   +  + +    +E 
Sbjct: 5   YALALKDKGNQFFRNKKYDDAIKYYNWALELKEDP---VFYSNLSACYVSVGDLKKVVEM 61

Query: 257 FHKLQAIVPSMPEVLYQIASLYEITGDVEQA-------------SDVNENLLLEAVRNDA 303
             K   + P   +VL + AS  E  G    A             +D +   +LE   N  
Sbjct: 62  STKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQ 121

Query: 304 LSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINK 361
                +E   + +    T  +L     ++      N    +   S       +L    
Sbjct: 122 AMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFAN 179

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 1/91 (1%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
           +    +F   + + A K    A      +   + NL  C ++  D  K  E+   AL+  
Sbjct: 11  DKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELK 69

Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQ 261
               + L     A++ L +++D++     L 
Sbjct: 70  PDYSKVLLRRASANEGLGKFADAMFDLSVLS 100

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 22/168 (13%), Positives = 53/168 (31%), Gaps = 19/168 (11%)

Query: 139 INKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT---NLSFIYFLQGEVEQAEKMAEEACTA 195
             +A  F++  +  +A+  LK+  ++ S        +S +Y+  G+ E +     E    
Sbjct: 158 ELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217

Query: 196 DTYNSAAFVNLGNCAMAREDYVKGKEL------------YVHAL----DNDATCIEALYN 239
           D  +   F +        +     +EL            Y   +          + +   
Sbjct: 218 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKER 277

Query: 240 LGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
           +        +  +++    ++  + P     L   A  Y I    ++A
Sbjct: 278 ICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEA 325

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 56.5 bits (137), Expect = 6e-09
 Identities = 23/183 (12%), Positives = 61/183 (33%), Gaps = 6/183 (3%)

Query: 199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFH 258
           +    + LG   +A          +  A+D D     A Y        + +   +L    
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61

Query: 259 KLQAIVPSMPEVLYQIASLYEITGDVEQA-SDVNENLLLEAVRNDALSQLHREMKHEAEK 317
           K+ A+         Q   L    G +++A  D  + L      ++   +       +A++
Sbjct: 62  KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP--SEQEEKEAESQLVKADE 119

Query: 318 CILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDV 377
                ++ +      +++    +  + +      +  +     +A  F++  +  +A+  
Sbjct: 120 MQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELR---ELRAECFIKEGEPRKAISD 176

Query: 378 LKS 380
           LK+
Sbjct: 177 LKA 179

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 53.4 bits (129), Expect = 5e-08
 Identities = 18/167 (10%), Positives = 45/167 (26%), Gaps = 18/167 (10%)

Query: 139 INKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT------------------NLSFIYFLQG 180
           + +    L+   + +A D  K   +   S                     + +   F   
Sbjct: 75  LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGA 134

Query: 181 EVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNL 240
           +   A    ++      +++        C +   +  K       A    +   EA Y +
Sbjct: 135 DYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKI 194

Query: 241 GLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
              +  L ++  SL    +   +             + ++   +E A
Sbjct: 195 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA 241

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 50.3 bits (121), Expect = 6e-07
 Identities = 18/158 (11%), Positives = 52/158 (32%), Gaps = 19/158 (12%)

Query: 140 NKAVTFLRMNDVSQAVDVLKSC---DEMTSSAATNLSFIYFLQGEVEQAEKMA-----EE 191
             +  + ++ D   ++  ++ C   D+       +   +  L   +E AE++       +
Sbjct: 193 KISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTD 252

Query: 192 ACTA-----------DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNL 240
           A +              Y   +   + +C    E  V+   +    L  +   + AL + 
Sbjct: 253 ATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDR 312

Query: 241 GLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLY 278
             A+     Y ++++ +   Q    +  ++   +    
Sbjct: 313 AEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 17/167 (10%), Positives = 52/167 (31%), Gaps = 18/167 (10%)

Query: 139 INKAVTFLRMNDVSQAVDVLKSCDEM--TSSAA-TNLSFIYFLQGEVEQAEKMAEEACTA 195
           +      L    ++ A+    +  +    +  A    + ++   G+ + A     +    
Sbjct: 7   LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL 66

Query: 196 DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHK---------- 245
               +AA +  G+  + +    + ++ +   L ++ +  E         K          
Sbjct: 67  KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQ 126

Query: 246 -----HLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
                   +Y+ ++    K+  +     E+    A  +   G+  +A
Sbjct: 127 ALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKA 173

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 64.1 bits (156), Expect = 3e-11
 Identities = 17/117 (14%), Positives = 39/117 (33%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
            +   Y    ++ +A +   ++ T D     A++   +      ++ +    Y  A    
Sbjct: 378 AVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437

Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
                    LG+ H  L     + E      A+    P +L ++  +     D++ A
Sbjct: 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTA 494

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 57.9 bits (140), Expect = 3e-09
 Identities = 22/133 (16%), Positives = 41/133 (30%), Gaps = 3/133 (2%)

Query: 166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKEL--- 222
           +S       +Y      ++A++  +EA   D     AF  L +  +   D      L   
Sbjct: 200 ASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLN 259

Query: 223 YVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG 282
           Y      DA  + +LY L L      +     E +      +    ++L   A    +  
Sbjct: 260 YSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319

Query: 283 DVEQASDVNENLL 295
                  +   +L
Sbjct: 320 RFIDVLAITTKIL 332

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 56.8 bits (137), Expect = 7e-09
 Identities = 19/150 (12%), Positives = 46/150 (30%), Gaps = 10/150 (6%)

Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEM---TSSAATNLSFIYFLQGEVEQAEKMAEEACTAD 196
              +  +++ ++  A + L+S   +          L  + F + +++ A    + A    
Sbjct: 446 FLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV 505

Query: 197 TYNSA-------AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNE 249
               +        + NLG+     + Y    +     L            + L + H   
Sbjct: 506 KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI 565

Query: 250 YSDSLECFHKLQAIVPSMPEVLYQIASLYE 279
              ++   H+  AI P+       +    E
Sbjct: 566 PGLAITHLHESLAISPNEIMASDLLKRALE 595

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 58.8 bits (142), Expect = 1e-10
 Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 3/123 (2%)

Query: 150 DVSQAVDVLKSCDEMTSS---AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNL 206
            +      +   +E++S       +L+F  +  G  E A  + +  C  D Y+S  F+ L
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61

Query: 207 GNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266
           G C  A   Y      Y +    D       ++         E +++       Q ++ +
Sbjct: 62  GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121

Query: 267 MPE 269
            PE
Sbjct: 122 XPE 124

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 54.5 bits (131), Expect = 3e-09
 Identities = 11/110 (10%), Positives = 27/110 (24%)

Query: 180 GEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYN 239
           G +              +       +L         Y     ++      D         
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 240 LGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASD 289
           LG   + + +Y  ++  +     +    P   +  A      G++ +A  
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAES 110

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 19/140 (13%), Positives = 33/140 (23%), Gaps = 12/140 (8%)

Query: 128 SAHSSLAQDLEI---------NKAVTFLRMNDVSQAVDVLKSC---DEMTSSAATNLSFI 175
           S   ++A   EI         + A    +      A  V ++    D   S     L   
Sbjct: 5   SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGAC 64

Query: 176 YFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIE 235
               G+ + A          D        +   C +   +  + +     A +  A   E
Sbjct: 65  RQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124

Query: 236 ALYNLGLAHKHLNEYSDSLE 255
                      L       E
Sbjct: 125 FXELSTRVSSMLEAIKLKKE 144

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 57.9 bits (141), Expect = 2e-10
 Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 28/140 (20%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEA-----------CTADTYNSAAFVNLGNCAMAREDYVKG 219
           NL   ++L G    A    E+                 Y+     NLGN  +   ++   
Sbjct: 14  NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYS-----NLGNAYIFLGEFETA 68

Query: 220 KELYVHALD-----NDATCI-EALYNLGLAHKHLNEYSDSLECFHKLQAI------VPSM 267
            E Y   L       D     ++ Y+LG  +  L +Y  +++   K  AI          
Sbjct: 69  SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 128

Query: 268 PEVLYQIASLYEITGDVEQA 287
               + + + Y   G+ +QA
Sbjct: 129 GRACWSLGNAYTALGNHDQA 148

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 51.0 bits (123), Expect = 6e-08
 Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 24/126 (19%)

Query: 153 QAVDVLKSCDEMTSSAAT--NLSFIYFLQGEVEQAEKMAEEA-----------CTADTYN 199
           Q + + K   +  +      NL   Y   GE E A +  ++              A +  
Sbjct: 34  QRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY 93

Query: 200 SAAFVNLGNCAMAREDYVKGKELYVHALD-----NDATCI-EALYNLGLAHKHLNEYSDS 253
                +LGN     +DY K  + ++  L       D      A ++LG A+  L  +  +
Sbjct: 94  -----SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 148

Query: 254 LECFHK 259
           +    K
Sbjct: 149 MHFAEK 154

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 17/110 (15%)

Query: 190 EEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALD-----NDATCI-EALYNLGLA 243
             A     +      NLGN      ++      +   L       D      A  NLG A
Sbjct: 4   SRAAQGRAFG-----NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNA 58

Query: 244 HKHLNEYSDSLECFHKLQAIV------PSMPEVLYQIASLYEITGDVEQA 287
           +  L E+  + E + K   +           +  Y + + Y +  D E+A
Sbjct: 59  YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 108

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 56.7 bits (137), Expect = 2e-10
 Identities = 15/96 (15%), Positives = 26/96 (27%)

Query: 164 MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELY 223
           M                 + +A    E  C  +     A+ +LG      E         
Sbjct: 15  MYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIAL 74

Query: 224 VHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHK 259
            HA   D   I     L ++H + +  + +L     
Sbjct: 75  NHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA 110

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 52.1 bits (125), Expect = 1e-08
 Identities = 10/83 (12%), Positives = 25/83 (30%)

Query: 205 NLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV 264
             G   +   +  +    +      +    EA  +LGL      +   ++   +  + + 
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81

Query: 265 PSMPEVLYQIASLYEITGDVEQA 287
           P    V   +A  +    +   A
Sbjct: 82  PKDIAVHAALAVSHTNEHNANAA 104

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 26/230 (11%), Positives = 77/230 (33%), Gaps = 18/230 (7%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
           +       +    Q+    E             + LG   +A          +  A+D D
Sbjct: 8   SSGVDLGTENLYFQSMADVE-----------KHLELGKKLLAAGQLADALSQFHAAVDGD 56

Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDV 290
                A Y        + +   +L    K+  +         Q   L    G +++A D 
Sbjct: 57  PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDD 116

Query: 291 NENLLLEAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAH 350
            +  +L++  ++   +  +    ++++     ++ +      +++    +  + +     
Sbjct: 117 FKK-VLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW 175

Query: 351 SSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSS---AATNLSFIYF 397
            +  +     +A  F++  +  +A+  LK+  ++ +    A   +S +Y+
Sbjct: 176 DAELR---ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYY 222

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 20/177 (11%), Positives = 60/177 (33%), Gaps = 20/177 (11%)

Query: 140 NKAVTFLRMNDVSQAVDVLKSC---DEMTSSAATNLSFIYFLQGEVEQAEKMA-----EE 191
             +  + ++ D   ++  ++ C   D+       +   +  L   +E AE++       +
Sbjct: 216 KISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTD 275

Query: 192 ACTA-----------DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNL 240
           A +              Y   +   + +C    E  V+   +    L  +   + AL + 
Sbjct: 276 ATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDR 335

Query: 241 GLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLE 297
             A+     Y ++++ +   Q    +  ++   +     +    ++  D  + L ++
Sbjct: 336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKR-DYYKILGVK 391

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 19/188 (10%), Positives = 50/188 (26%), Gaps = 21/188 (11%)

Query: 139 INKAVTFLRMNDVSQAVDVLKSCDEM------------------TSSAATNLSFIYFLQG 180
           + +    L+   + +A D  K   +                         + +   F  G
Sbjct: 98  LQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG 157

Query: 181 EVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNL 240
           +   A    ++      +++        C +   +  K       A        EA Y +
Sbjct: 158 DYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKI 217

Query: 241 GLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASD-VNENLLLEAV 299
              +  L ++  SL    +   +             + ++   +E A + + +    +A 
Sbjct: 218 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 277

Query: 300 R--NDALS 305
                 + 
Sbjct: 278 SKYESVMK 285

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 19/141 (13%), Positives = 34/141 (24%), Gaps = 8/141 (5%)

Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN 199
           +  V     N   Q++                L       G++  A      A   D  N
Sbjct: 8   SSGVDLGTENLYFQSMA--------DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN 59

Query: 200 SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHK 259
             A+       +A              +        A    G       +  ++ + F K
Sbjct: 60  YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKK 119

Query: 260 LQAIVPSMPEVLYQIASLYEI 280
           +    PS  E     + L + 
Sbjct: 120 VLKSNPSENEEKEAQSQLIKS 140

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 35/187 (18%)

Query: 126 RNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT--NLSFIYFLQGEVE 183
           RN           + +AV F +     + + +++   +  +      NL   Y+L G+ +
Sbjct: 186 RNPGKFGDDVKEALTRAVEFYQ-----ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQ 240

Query: 184 QAEKMAEEA-----------CTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALD---- 228
            A +  +E                  +     NLGN  +    +    E Y   L     
Sbjct: 241 AAIEHHQERLRIAREFGDRAAERRANS-----NLGNSHIFLGQFEDAAEHYKRTLALAVE 295

Query: 229 --NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI------VPSMPEVLYQIASLYEI 280
                   ++ Y+LG  +  L+E++ ++E  ++  AI              + + + +  
Sbjct: 296 LGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA 355

Query: 281 TGDVEQA 287
            G  E+A
Sbjct: 356 IGGHERA 362

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 29/205 (14%), Positives = 53/205 (25%), Gaps = 34/205 (16%)

Query: 122 VQSIRNSAHSSLAQDL-EINKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT--NLSFIYFL 178
           + S+  SA +  +  L                         D  +S              
Sbjct: 6   MSSLSASAENVSSLGLGSGGGGTNSH-----DGNSQQGSGSDGGSSMCLELALEGERLCN 60

Query: 179 QGEVEQAEKMAEEA---------CTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALD- 228
            G+        + A           +  Y+      LGN      DY K  + + H L  
Sbjct: 61  AGDCRAGVAFFQAAIQAGTEDLRTLSAIYS-----QLGNAYFYLGDYNKAMQYHKHDLTL 115

Query: 229 ----NDATCI-EALYNLGLAHKHLNEYSDSLECFHKLQAIV------PSMPEVLYQIASL 277
               ND     ++  NLG   K +  + ++  C  +   +        S    LY + ++
Sbjct: 116 AKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNV 175

Query: 278 YEITGDVEQASDVNENLLLEAVRND 302
           Y   G      +  +          
Sbjct: 176 YHAKGKHLGQRNPGKFGDDVKEALT 200

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 19/139 (13%), Positives = 43/139 (30%), Gaps = 31/139 (22%)

Query: 141 KAVTFLRMNDVSQAVDVLKSCDEMTSSAAT--NLSFIYFLQGEVEQAEKMAEEAC----- 193
            A+   +     + + + +   +  +      NL   +   G+ E A +  +        
Sbjct: 241 AAIEHHQ-----ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVE 295

Query: 194 ------TADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL-------DNDATCIEALYNL 240
                  A +       +LGN      ++    E +   L       D       A ++L
Sbjct: 296 LGEREVEAQSCY-----SLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEA-RACWSL 349

Query: 241 GLAHKHLNEYSDSLECFHK 259
           G AH  +  +  +L+   +
Sbjct: 350 GNAHSAIGGHERALKYAEQ 368

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 21/157 (13%), Positives = 38/157 (24%), Gaps = 45/157 (28%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEA-----------CTADTYNSAAFVNLGNCAMAREDYVKG 219
           NL     + G  ++A    E                         NLGN   A+  ++  
Sbjct: 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALY-----NLGNVYHAKGKHLGQ 185

Query: 220 KELYVHALDNDATCIEA-----------------------LYNLGLAHKHLNEYSDSLEC 256
           +       D       A                         NLG  +  L ++  ++E 
Sbjct: 186 RNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEH 245

Query: 257 FHKLQAIV------PSMPEVLYQIASLYEITGDVEQA 287
             +   I        +       + + +   G  E A
Sbjct: 246 HQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA 282

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 18/134 (13%), Positives = 43/134 (32%), Gaps = 1/134 (0%)

Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
            A         +G++       E A   D  ++ A+  LG      E+           L
Sbjct: 67  GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126

Query: 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
           +     ++AL  L +++ + +   D+ E         P    ++        +T  + ++
Sbjct: 127 ELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKS 186

Query: 288 SDVNENLLLEAVRN 301
              + ++L      
Sbjct: 187 PV-DSSVLEGVKEL 199

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 16/111 (14%), Positives = 35/111 (31%), Gaps = 2/111 (1%)

Query: 179 QGEVEQAEKMAEEACT--ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEA 236
              +E  +++  EA     D  +      LG       ++ +  + +  AL         
Sbjct: 190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSL 249

Query: 237 LYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
              LG    + +   +++E + +   I P      Y +       G   +A
Sbjct: 250 WNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 30/154 (19%), Positives = 53/154 (34%), Gaps = 7/154 (4%)

Query: 162 DEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKE 221
           D +     T L  ++ L GE  +A      A T    + + +  LG      +   +  E
Sbjct: 209 DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVE 268

Query: 222 LYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIA-----S 276
            Y  AL+     I + YNLG++  +L  Y +++  F    ++                 +
Sbjct: 269 AYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGN 328

Query: 277 LYEITGDVEQASDVNENLLLEAVRNDALSQLHRE 310
           ++          D  E  L +A     L  L R 
Sbjct: 329 IWAALRIALSLMDQPE--LFQAANLGDLDVLLRA 360

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 15/137 (10%), Positives = 34/137 (24%), Gaps = 3/137 (2%)

Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMTSSAA---TNLSFIYFLQGEVEQAEKMAEEACTAD 196
            + +  L+  D+   +  +++        A     L          + A    +      
Sbjct: 70  EEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ 129

Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256
             N  A + L              E   + +  +      + N   +       S S   
Sbjct: 130 PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVD 189

Query: 257 FHKLQAIVPSMPEVLYQ 273
              L+ +     E  +Q
Sbjct: 190 SSVLEGVKELYLEAAHQ 206

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 57.7 bits (140), Expect = 6e-10
 Identities = 12/150 (8%), Positives = 38/150 (25%), Gaps = 29/150 (19%)

Query: 162 DEMTSSAATNLSFIYFLQGEVEQAEKMAEEA-----------CTADTYNSAAFVNLGNCA 210
               S A   L ++Y      ++A    +                   +      +G   
Sbjct: 22  PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALH-----QVGMVE 76

Query: 211 MAREDYVKGKELYVHALD------NDATCI-EALYNLGLAHKHLNEYSDSLECFHKLQAI 263
               ++   +  ++   +       D        Y +     H  + + + + + K    
Sbjct: 77  RMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY 136

Query: 264 ------VPSMPEVLYQIASLYEITGDVEQA 287
                   ++      +  L +   ++ +A
Sbjct: 137 AQQADDQVAIACAFRGLGDLAQQEKNLLEA 166

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 16/157 (10%), Positives = 44/157 (28%), Gaps = 31/157 (19%)

Query: 153 QAVDVLKSCDEMTSSAAT--NLSFIYFLQGEVEQAEKMAEEACT------------ADTY 198
                 +   + T+       +  +  + G  + A +   E               +   
Sbjct: 51  ALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANA 110

Query: 199 NSAAFVNLGNCAMAREDYVKGKELYVHALD-----NDATCI-EALYNLGLAHKHLNEYSD 252
                  +   A+   D    ++ Y  +L      +D   I  A   LG   +      +
Sbjct: 111 Y-----EVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLE 165

Query: 253 SLECFHKLQAIV------PSMPEVLYQIASLYEITGD 283
           + + + + + I        ++ E++ ++  L      
Sbjct: 166 AQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 15/102 (14%), Positives = 39/102 (38%), Gaps = 22/102 (21%)

Query: 166 SSAATNLSFIYFLQGEVEQAEKMAEEA-----------CTADTYNSAAFVNLGNCAMARE 214
           S+ A  ++ +    G++  A +  E++             A  +       LG+ A   +
Sbjct: 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFR-----GLGDLAQQEK 161

Query: 215 DYVKGKELYVHALD-----NDATCI-EALYNLGLAHKHLNEY 250
           + ++ ++ ++ A D      D+  + E +  L     H + +
Sbjct: 162 NLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHHH 203

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 57.6 bits (140), Expect = 1e-09
 Identities = 21/150 (14%), Positives = 43/150 (28%), Gaps = 2/150 (1%)

Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEM--TSSAATNLSFIYFLQGEVEQAEKMAEEACTADT 197
             + +F R+ +    +  LK   E    S      + I       E+  K AE     + 
Sbjct: 77  VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNP 136

Query: 198 YNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECF 257
             +      G     + D+    + Y   +           N   A   L  + +++   
Sbjct: 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 196

Query: 258 HKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
           +K     P+      + A+      +   A
Sbjct: 197 NKAIEKDPNFVRAYIRKATAQIAVKEYASA 226

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 19/144 (13%), Positives = 44/144 (30%), Gaps = 5/144 (3%)

Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMT---SSAATNLSFIYFLQGEVEQAEKMAEEACTAD 196
             A    ++ +  + +   ++   +    +  A      YF + +   A K   E     
Sbjct: 110 RTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA 169

Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256
             ++  + N          + +       A++ D   + A      A   + EY+ +LE 
Sbjct: 170 PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALET 229

Query: 257 FHKLQAIVPSMPEVLY--QIASLY 278
               +     +       +I  LY
Sbjct: 230 LDAARTKDAEVNNGSSAREIDQLY 253

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 14/121 (11%), Positives = 28/121 (23%), Gaps = 1/121 (0%)

Query: 167 SAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHA 226
           +   N +   + +GE E A     +A        A +  +        +           
Sbjct: 39  TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKT 98

Query: 227 LDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQ 286
           ++     +   +        L      L+       + P   E        Y    D   
Sbjct: 99  IEYYQKSLTE-HRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN 157

Query: 287 A 287
           A
Sbjct: 158 A 158

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 43.3 bits (103), Expect = 7e-05
 Identities = 18/95 (18%), Positives = 26/95 (27%), Gaps = 10/95 (10%)

Query: 195 ADTYNSAAFVNLGNCAMAREDYVKGKELYVHA--LDNDATCIEALYNLGLAHKHLNEYSD 252
           AD          GN       + +  E Y  A  L  D   I  L N   A     EY  
Sbjct: 5   ADKEK-----AEGNKFYKARQFDEAIEHYNKAWELHKD---ITYLNNRAAAEYEKGEYET 56

Query: 253 SLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
           ++   +        M      I+  +   G+    
Sbjct: 57  AISTLNDAVEQGREMRADYKVISKSFARIGNAYHK 91

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 9/117 (7%), Positives = 29/117 (24%), Gaps = 2/117 (1%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
                ++   + ++A +   +A      +     N       + +Y         A++  
Sbjct: 10  AEGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAISTLNDAVEQG 68

Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
                    +  +   +      L    K            ++ A +     + E+ 
Sbjct: 69  REMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT-EHRTADILTKLRNAEKE 124

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 17/117 (14%), Positives = 33/117 (28%), Gaps = 9/117 (7%)

Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMT------SSAATNLSFIYFLQGEVEQAEKMAEEAC 193
            +   +   +D   AV   K+  EM       +   +N +          +A     +A 
Sbjct: 144 LEGKEYFTKSDWPNAV---KAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAI 200

Query: 194 TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEY 250
             D     A++      +A ++Y    E    A   DA          +   +    
Sbjct: 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 257

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 18/121 (14%), Positives = 31/121 (25%)

Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
                         + +A    E  C A      A+ +LG      E          HA 
Sbjct: 23  NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHAR 82

Query: 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
             D   I     L ++H + +  + +L          P   ++            D+   
Sbjct: 83  MLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQ 142

Query: 288 S 288
           S
Sbjct: 143 S 143

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 22/166 (13%), Positives = 53/166 (31%), Gaps = 18/166 (10%)

Query: 140 NKAVTFLRMNDVSQAVDVLK------------------SCDEMTSSAATNLSFIYFLQGE 181
             AV+    ++ + A+  L+                  +  ++      +  F +    E
Sbjct: 94  ALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE 153

Query: 182 VEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLG 241
             +   +   A   +  ++    +LG       +Y         A++      +    LG
Sbjct: 154 YRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLG 213

Query: 242 LAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
               + N   ++L+ +++   I P    V+Y +A  Y      + A
Sbjct: 214 ATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 26/165 (15%), Positives = 59/165 (35%), Gaps = 24/165 (14%)

Query: 109 SIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSA 168
             +  +    +     +   A   +      ++   F   N+  +   +L +  EM  + 
Sbjct: 117 LSQPQYEQLGS-----VNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND 171

Query: 169 A---TNLSFIYFLQGEVEQAEKMAEEACT-----ADTYNS--AAFVNLGNCAMAREDYVK 218
           A    +L  +Y L    + A      A       A  +N   A   N      A + Y +
Sbjct: 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNR 231

Query: 219 GKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI 263
                  ALD +   +  +YN+ +++ ++++Y  + +    ++AI
Sbjct: 232 -------ALDINPGYVRVMYNMAVSYSNMSQYDLAAKQL--VRAI 267

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 28/158 (17%), Positives = 43/158 (27%), Gaps = 26/158 (16%)

Query: 170 TNLSFIYFLQGEVEQAEKMAEEA---------CTADTYNSAAFVNLGNCAMAREDYVKGK 220
                     G+        E A           +  Y+      LGN      DY K  
Sbjct: 9   ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYS-----QLGNAYFYLHDYAKAL 63

Query: 221 ELYVHALD-----NDATCI-EALYNLGLAHKHLNEYSDSLECFHKLQAIV------PSMP 268
           E + H L       D     +A  NLG   K L  + +++ C  +   I           
Sbjct: 64  EYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 123

Query: 269 EVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQ 306
             LY + ++Y   G         +         +AL  
Sbjct: 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA 161

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 49.6 bits (119), Expect = 9e-07
 Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 24/126 (19%)

Query: 153 QAVDVLKSCDEMTSSAAT--NLSFIYFLQGEVEQAEKMAEEA-----------CTADTYN 199
           Q + + K   +  +      NL   Y   GE E A +  ++              A +  
Sbjct: 208 QRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY 267

Query: 200 SAAFVNLGNCAMAREDYVKGKELYVHALD-----NDATCI-EALYNLGLAHKHLNEYSDS 253
                +LGN     +DY K  + ++  L       D      A ++LG A+  L  +  +
Sbjct: 268 -----SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322

Query: 254 LECFHK 259
           +    K
Sbjct: 323 MHFAEK 328

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 23/155 (14%), Positives = 38/155 (24%), Gaps = 38/155 (24%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEA-----------CTADTYNS--AAFVNLGNCAMA----- 212
           NL     + G  ++A    +               A    +    +   G          
Sbjct: 88  NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQD 147

Query: 213 --------REDYVKGKELYVHALD-----NDATCI-EALYNLGLAHKHLNEYSDSLECFH 258
                   R       +LY   L       D      A  NLG  H  L  + D++    
Sbjct: 148 TGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHE 207

Query: 259 KLQAI------VPSMPEVLYQIASLYEITGDVEQA 287
           +   I        +       + + Y   G+ E A
Sbjct: 208 QRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 29/174 (16%), Positives = 48/174 (27%), Gaps = 33/174 (18%)

Query: 131 SSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEM-------TSSAATNLSFIYFLQGEVE 183
           S+   +L   +     +  D    V   ++  ++        S+  + L   YF   +  
Sbjct: 2   SASCLEL-ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYA 60

Query: 184 QAEKMAEEA-----------CTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALD---- 228
           +A +                  A         NLGN      ++ +        LD    
Sbjct: 61  KALEYHHHDLTLARTIGDQLGEAKASG-----NLGNTLKVLGNFDEAIVCCQRHLDISRE 115

Query: 229 -NDATCI-EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIA-SLYE 279
            ND      ALYNLG  +    +           +           Q A  LYE
Sbjct: 116 LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA--LQAAVDLYE 167

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 56.9 bits (138), Expect = 5e-09
 Identities = 31/196 (15%), Positives = 64/196 (32%), Gaps = 35/196 (17%)

Query: 117 GYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT--NLSF 174
           G ++     ++           +  AV F       + + ++ +  +  +      NL  
Sbjct: 141 GKSFGCPGPQDVGEFPEEVRDALQAAVDFYE-----ENLSLVTALGDRAAQGRAFGNLGN 195

Query: 175 IYFLQGEVEQAEKMAEEA-----------CTADTYNSAAFVNLGNCAMAREDYVKGKELY 223
            ++L G    A    E+                 Y+     NLGN  +   ++    E Y
Sbjct: 196 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYS-----NLGNAYIFLGEFETASEYY 250

Query: 224 VHALD------NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI------VPSMPEVL 271
              L       + A   ++ Y+LG  +  L +Y  +++   K  AI              
Sbjct: 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRAC 310

Query: 272 YQIASLYEITGDVEQA 287
           + + + Y   G+ +QA
Sbjct: 311 WSLGNAYTALGNHDQA 326

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 56.5 bits (137), Expect = 6e-09
 Identities = 29/158 (18%), Positives = 43/158 (27%), Gaps = 26/158 (16%)

Query: 170 TNLSFIYFLQGEVEQAEKMAEEA---------CTADTYNSAAFVNLGNCAMAREDYVKGK 220
                     G+        E A           +  Y+      LGN      DY K  
Sbjct: 13  ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYS-----QLGNAYFYLHDYAKAL 67

Query: 221 ELYVHALD-----NDATCI-EALYNLGLAHKHLNEYSDSLECFHKLQAIV------PSMP 268
           E + H L       D     +A  NLG   K L  + +++ C  +   I           
Sbjct: 68  EYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 127

Query: 269 EVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQ 306
             LY + ++Y   G         +         DAL  
Sbjct: 128 RALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 34/190 (17%), Positives = 63/190 (33%), Gaps = 32/190 (16%)

Query: 153 QAVDVLKSCDEMTSSAAT--NLSFIYFLQGEVEQAEKMAEEA-----------CTADTYN 199
           Q + + K   +  +      NL   Y   GE E A +  ++              A +  
Sbjct: 212 QRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY 271

Query: 200 SAAFVNLGNCAMAREDYVKGKELYVHALD-----NDATCI-EALYNLGLAHKHLNEYSDS 253
                +LGN     +DY K  + ++  L      ND      A ++LG A+  L  +  +
Sbjct: 272 -----SLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326

Query: 254 LECFHKLQAI------VPSMPEVLYQIASLYEITGDV-EQASDV-NENLLLEAVRNDALS 305
           +    K   I                ++ L  + G      + + +EN  +++  N    
Sbjct: 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRP 386

Query: 306 QLHREMKHEA 315
           +L R    E 
Sbjct: 387 KLGRRHSMEN 396

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 15/106 (14%), Positives = 31/106 (29%)

Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
                      +G++  A  + E A   D  +  A+  LG      E  +         L
Sbjct: 66  QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCL 125

Query: 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQ 273
           +       AL  L ++  + +    + E         P+   ++  
Sbjct: 126 ELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP 171

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 17/124 (13%), Positives = 34/124 (27%), Gaps = 4/124 (3%)

Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYN----SAAFVNLGNCAMAREDYVKGKELY 223
           A  +     +L    +      ++    +  N           G   +   D      L+
Sbjct: 28  AKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87

Query: 224 VHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGD 283
             A+  D   +EA   LG       +   ++    +   + P     L  +A  +     
Sbjct: 88  EAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL 147

Query: 284 VEQA 287
             QA
Sbjct: 148 QRQA 151

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 22/169 (13%), Positives = 45/169 (26%), Gaps = 22/169 (13%)

Query: 140 NKAVTFLRMNDVSQAVDVLK------------SCDEMTSSAATNLSFIYFLQGEVEQAEK 187
             AV+F   +   QA ++L+                   +    L     + G +     
Sbjct: 137 ALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSL 196

Query: 188 MAEEACTA---------DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALY 238
              E              + +      LG       +Y K  + +  AL           
Sbjct: 197 F-LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN 255

Query: 239 NLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
            LG    + N+  +++  + +   + P      Y +       G   +A
Sbjct: 256 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA 304

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 16/136 (11%)

Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN 199
           N+ V      D   A+D   +  +  S    N+  +Y +   + +AEK    +   D + 
Sbjct: 11  NEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL 70

Query: 200 SAAFVNLGNCAMAREDYVKGKELYVHAL----DNDAT------------CIEALYNLGLA 243
           + A+   G      E Y    +    AL     N                 E LYN+   
Sbjct: 71  AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFM 130

Query: 244 HKHLNEYSDSLECFHK 259
           +    E+  + E    
Sbjct: 131 YAKKEEWKKAEEQLAL 146

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 52.0 bits (125), Expect = 5e-08
 Identities = 18/135 (13%), Positives = 47/135 (34%), Gaps = 23/135 (17%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
           N   +   + + + A             +S    N+G      ++  + ++ +  +++ D
Sbjct: 11  NEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD 67

Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMP------------------EVLY 272
                A +  G+ +    +Y  +++   +  A++                      EVLY
Sbjct: 68  KHLAVAYFQRGMLYYQTEKYDLAIKDLKE--ALIQLRGNQLIDYKILGLQFKLFACEVLY 125

Query: 273 QIASLYEITGDVEQA 287
            IA +Y    + ++A
Sbjct: 126 NIAFMYAKKEEWKKA 140

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 16/151 (10%), Positives = 38/151 (25%), Gaps = 3/151 (1%)

Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT---NLSFIYFLQGEVEQAEKMAEEACTAD 196
           +       +  V + + VL     +T        +          V++   +  +A    
Sbjct: 77  SHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 136

Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256
                A  +      A E       +   A       + A+ + G   + L      L  
Sbjct: 137 PEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPV 196

Query: 257 FHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
             +   + P     +       +    V++ 
Sbjct: 197 LCQAHGLTPQQVVAIASNGGGKQALETVQRL 227

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 54.0 bits (130), Expect = 5e-08
 Identities = 15/151 (9%), Positives = 36/151 (23%), Gaps = 3/151 (1%)

Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMTSSAA---TNLSFIYFLQGEVEQAEKMAEEACTAD 196
           +       +  V + + VL     +T        +          V++   +  +A    
Sbjct: 315 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 374

Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256
                A  + G    A E   +   +   A       + A+ +     + L      L  
Sbjct: 375 PEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPV 434

Query: 257 FHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
             +   + P     +            +   
Sbjct: 435 LCQAHGLTPQQVVAIASNGGGRPALESIVAQ 465

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 54.0 bits (130), Expect = 5e-08
 Identities = 17/151 (11%), Positives = 41/151 (27%), Gaps = 3/151 (1%)

Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMT---SSAATNLSFIYFLQGEVEQAEKMAEEACTAD 196
           + +     +  V + + VL     +T     A  +          V++   +  +A    
Sbjct: 281 SNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 340

Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256
                A  +      A E   +   +   A       + A+ + G   + L      L  
Sbjct: 341 PQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPV 400

Query: 257 FHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
             +   + P     +       +    V++ 
Sbjct: 401 LCQAHGLTPEQVVAIASHDGGKQALETVQRL 431

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 12/117 (10%), Positives = 30/117 (25%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
           +          V++   +  +A         A  + G    A E   +   +   A    
Sbjct: 213 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 272

Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
              + A+ +     + L      L    +   + P     +       +    V++ 
Sbjct: 273 PQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRL 329

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 13/117 (11%), Positives = 30/117 (25%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
           +          V+    +  +A         A  + G    A E   +   +   A    
Sbjct: 145 SHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 204

Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
              + A+ + G   + L      L    +   + P     +       +    V++ 
Sbjct: 205 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRL 261

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 47.1 bits (112), Expect = 7e-06
 Identities = 16/129 (12%), Positives = 33/129 (25%), Gaps = 3/129 (2%)

Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMT---SSAATNLSFIYFLQGEVEQAEKMAEEACTAD 196
           +       +  V + + VL     +T     A  +          V++   +  +A    
Sbjct: 349 SHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 408

Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256
                A  +      A E   +   +   A       + A+ + G     L      L  
Sbjct: 409 PEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSR 468

Query: 257 FHKLQAIVP 265
                A + 
Sbjct: 469 PDPALAALT 477

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 47.1 bits (112), Expect = 7e-06
 Identities = 9/120 (7%), Positives = 25/120 (20%)

Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
                  +  ++        +             A  +      A E   +   +   A 
Sbjct: 40  KIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAH 99

Query: 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
                 + A+ +     + L      L    +   + P     +       +    V+  
Sbjct: 100 GLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQAL 159

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 13/117 (11%), Positives = 29/117 (24%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
             S    L+  +  A ++       DT         G        +     L    L+  
Sbjct: 9   QWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLT 68

Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
              + A+ +     + L      L    +   + P     +       +    V++ 
Sbjct: 69  PEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRL 125

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 5/107 (4%)

Query: 178 LQGEVEQAEKMAEEA---CTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCI 234
           + G   QA    E+A          +  ++ LG+      +Y K + +  + +       
Sbjct: 2   VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ 61

Query: 235 EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVL-YQIA-SLYE 279
                  +   +L  Y   +E   K+ A       +  Y+ A   Y 
Sbjct: 62  ALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYA 108

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 3/100 (3%)

Query: 221 ELYVHALD---NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASL 277
             Y  A+          E    LG   + L EY  +           P+   +    A +
Sbjct: 11  PYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMV 70

Query: 278 YEITGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEK 317
               G  EQ  ++   ++ E   ++ +    + +   A+K
Sbjct: 71  LYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYADK 110

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 54.4 bits (131), Expect = 2e-08
 Identities = 21/141 (14%), Positives = 47/141 (33%), Gaps = 29/141 (20%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEA------------CTADTYNSAAFVNLGNCAMAREDYVK 218
            +S  Y+   +   +   A +A                 ++           +  + Y  
Sbjct: 148 KMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS-----LFATNFLDLKQYED 202

Query: 219 GKELYVHAL------DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI------VPS 266
               +  A                LYN+GL     ++Y D++  F +  A+      +PS
Sbjct: 203 AISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262

Query: 267 MPEVLYQIASLYEITGDVEQA 287
           +P+  + I  ++   G +++A
Sbjct: 263 LPQAYFLITQIHYKLGKIDKA 283

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 27/232 (11%), Positives = 68/232 (29%), Gaps = 32/232 (13%)

Query: 84  LSQLHREMKH----EAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEI 139
           +++ +  ++     +AE       K     +E++      + +   R   H+ + + LE 
Sbjct: 16  INEWYMYIRRFSIPDAEYL-RREIKQELDQMEEDQDLHLYYSLMEFR---HNLMLEYLEP 71

Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSF-----IYFLQGEVEQAEKMAEEA-- 192
            + +       +S  +  +       +                 Q E   A K  ++A  
Sbjct: 72  LEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAES 131

Query: 193 ---------CTADTYNSAAFV--NLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLG 241
                      A+ +   +     +     + +   +  E+Y      +   ++      
Sbjct: 132 KLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191

Query: 242 LAHKHLNEYSDSLECFHKLQAIVPSMPE------VLYQIASLYEITGDVEQA 287
                L +Y D++  F K  ++  +  +       LY I          E A
Sbjct: 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA 243

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 23/146 (15%), Positives = 44/146 (30%), Gaps = 27/146 (18%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEA-----------CTADTYNSAAFVNLGNCAMAREDYVKG 219
             +  +    + E A    ++A               T       N+G C  ++  Y   
Sbjct: 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLY-----NIGLCKNSQSQYEDA 243

Query: 220 KELYVHAL------DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQ 273
              +  A+      +   +  +A + +   H  L +   + E   K  A      +V+Y 
Sbjct: 244 IPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYL 303

Query: 274 -----IASLYEITGDVEQASDVNENL 294
                + SLY    D E      + L
Sbjct: 304 SEFEFLKSLYLSGPDEEAIQGFFDFL 329

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 18/153 (11%), Positives = 42/153 (27%), Gaps = 17/153 (11%)

Query: 153 QAVDVLKSCDEMTSSAAT--NLSFIYFLQGEVEQAEKMAEEAC-----TADTYNSA-AFV 204
           +A  + ++  +      T  N+      Q + E A    + A      +    +   A+ 
Sbjct: 209 KAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268

Query: 205 NLGNCAMAREDYVKGKELYVHALD--------NDATCIEALYNLGLAHKHLNEYSDSLEC 256
            +           K  E +   +            +  E L +L L+           + 
Sbjct: 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDF 328

Query: 257 FHKLQAIVPSMPEVLYQIASLYEITGDVEQASD 289
                     + +    +A  Y    + ++AS 
Sbjct: 329 LESKMLY-ADLEDFAIDVAKYYHERKNFQKASA 360

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.0 bits (132), Expect = 3e-08
 Identities = 23/225 (10%), Positives = 55/225 (24%), Gaps = 12/225 (5%)

Query: 75  NARAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLA 134
              A+ +    +   E   +    +  +  L    +    SN       +        L 
Sbjct: 462 QVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLC 521

Query: 135 QDLEI---------NKAVTFLRMNDVSQAVDVLKSCDEMT---SSAATNLSFIYFLQGEV 182
           Q   +         +       +  V + + VL     +T     A  +          V
Sbjct: 522 QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETV 581

Query: 183 EQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL 242
           ++   +  +A         A  +      A E   +   +   A       + A+ +   
Sbjct: 582 QRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDG 641

Query: 243 AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
             + L      L    +   + P     +       +    V++ 
Sbjct: 642 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 686

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.8 bits (121), Expect = 6e-07
 Identities = 21/199 (10%), Positives = 48/199 (24%), Gaps = 6/199 (3%)

Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
           A  + +        V++   +  +A         A  +      A E   +   +   A 
Sbjct: 194 AIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAH 253

Query: 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
                 + A+ +     + L      L    +   + P     +       +    V++ 
Sbjct: 254 GLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRL 313

Query: 288 SDVNENLL------LEAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWC 341
             V           + A+ +    +   E        +  +  L    +    SNG    
Sbjct: 314 LPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQ 373

Query: 342 VQSIRNSAHSSLAQDLEIN 360
                      L Q   + 
Sbjct: 374 ALETVQRLLPVLCQAHGLT 392

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.4 bits (120), Expect = 8e-07
 Identities = 12/121 (9%), Positives = 30/121 (24%)

Query: 167 SAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHA 226
            A  +          V++   +  +A         A  +      A E   +   +   A
Sbjct: 600 VAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQA 659

Query: 227 LDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQ 286
                  + A+ + G   + L      L    +   +       +       +    V++
Sbjct: 660 HGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQR 719

Query: 287 A 287
            
Sbjct: 720 L 720

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 13/120 (10%), Positives = 31/120 (25%), Gaps = 1/120 (0%)

Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
           A  +          V++   +  +A         A  +      A E   +   +   A 
Sbjct: 296 AIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAH 355

Query: 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
                 + A+ + G   + L      L    +   + P     +        +   V++ 
Sbjct: 356 GLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQAL-ETVQRL 414

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 47.7 bits (113), Expect = 6e-06
 Identities = 16/151 (10%), Positives = 40/151 (26%), Gaps = 3/151 (1%)

Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMTSSAA---TNLSFIYFLQGEVEQAEKMAEEACTAD 196
           +       +  V + + VL     +T +      +          V++   +  +A    
Sbjct: 604 SNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 663

Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256
                A  + G    A E   +   +   A       + A+ +     + L      L  
Sbjct: 664 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPV 723

Query: 257 FHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
             +   + P     +       +    V++ 
Sbjct: 724 LCQAHGLTPDQVVAIASNGGGKQALETVQRL 754

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 23/230 (10%), Positives = 56/230 (24%), Gaps = 9/230 (3%)

Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMTSSAA---TNLSFIYFLQGEVEQAEKMAEEACTAD 196
           +       +  V + + VL     +T +      +          V+Q   +  +A    
Sbjct: 434 SHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLT 493

Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256
                A  +      A     +   +   A       + A+ + G   + L      L  
Sbjct: 494 PDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 553

Query: 257 FHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLL------LEAVRNDALSQLHRE 310
             +   + P     +       +    V++   V           + A+ ++   +   E
Sbjct: 554 LCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALE 613

Query: 311 MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEIN 360
                   +  +  L    +    S+                L Q   + 
Sbjct: 614 TVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 663

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.6 bits (105), Expect = 5e-05
 Identities = 15/123 (12%), Positives = 33/123 (26%), Gaps = 1/123 (0%)

Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
           A  +          V++   +  +A         A  + G    A E   +   +   A 
Sbjct: 364 AIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG-KQALETVQRLLPVLCQAH 422

Query: 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
                 + A+ +     + L      L    +   + P+    +       +    V+Q 
Sbjct: 423 GLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQL 482

Query: 288 SDV 290
             V
Sbjct: 483 LPV 485

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.3 bits (104), Expect = 7e-05
 Identities = 9/120 (7%), Positives = 26/120 (21%)

Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
                  +  ++        +             A  +      A E   +   +   A 
Sbjct: 160 KIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAH 219

Query: 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
                 + A+ +     + L      L    +   + P     +       +    V++ 
Sbjct: 220 GLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRL 279

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 14/126 (11%), Positives = 33/126 (26%)

Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
           A  +          V++   +  +A         A  +      A E   +   +   A 
Sbjct: 669 AIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAH 728

Query: 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
                 + A+ + G   + L      L    +   + P+    +       +    V++ 
Sbjct: 729 GLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRL 788

Query: 288 SDVNEN 293
             V   
Sbjct: 789 LPVLCQ 794

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 12/121 (9%), Positives = 30/121 (24%)

Query: 167 SAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHA 226
                 S    L+  +  A ++       DT         G        +     L    
Sbjct: 125 GVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAP 184

Query: 227 LDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQ 286
           L+     + A+ +     + L      L    +   + P+    +       +    +++
Sbjct: 185 LNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQR 244

Query: 287 A 287
            
Sbjct: 245 L 245

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 15/150 (10%), Positives = 39/150 (26%), Gaps = 2/150 (1%)

Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQ--GEVEQAEKMAEEACTADT 197
           +       +  V + + VL     +T      ++     Q    V++   +  +A     
Sbjct: 367 SNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTP 426

Query: 198 YNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECF 257
               A  +      A E   +   +           + A+ +     + L      L   
Sbjct: 427 DQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVL 486

Query: 258 HKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
            +   + P     +       +    V++ 
Sbjct: 487 CQAHGLTPDQVVAIASNIGGKQALATVQRL 516

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 54.6 bits (131), Expect = 3e-08
 Identities = 26/170 (15%), Positives = 53/170 (31%), Gaps = 22/170 (12%)

Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT--NLSFIYFLQG---------EVEQAEKM 188
                + +  DV+ A            +  +  NLS +               V  + + 
Sbjct: 142 QLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ 201

Query: 189 AEEACTADTYNSAAFVNLGNCAMAR-----------EDYVKGKELYVHALDNDATCIEAL 237
           A+ A   D  +  ++  LGN  ++            +  +             ++  +  
Sbjct: 202 AKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLH 261

Query: 238 YNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
            N    HK+   Y ++LE F +  A+ P+ PE   +   L E    +   
Sbjct: 262 LNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL 311

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 20/125 (16%), Positives = 43/125 (34%), Gaps = 4/125 (3%)

Query: 178 LQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVK-GKELYVHALDNDATCIEA 236
           +Q E+E+  +  EE   +    + A +  G       DY    + L   A+  +   +EA
Sbjct: 80  VQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEA 139

Query: 237 LYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLL 296
              LG  +    + + +  CF        +    L  ++ +                 ++
Sbjct: 140 WNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRH--VM 196

Query: 297 EAVRN 301
           ++VR 
Sbjct: 197 DSVRQ 201

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 15/83 (18%), Positives = 25/83 (30%)

Query: 180 GEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYN 239
            +   A   AE+     + N    +N        E Y +  E +  A   D    E    
Sbjct: 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQR 297

Query: 240 LGLAHKHLNEYSDSLECFHKLQA 262
                + L+  +  LE   K + 
Sbjct: 298 EQQLLEFLSRLTSLLESKGKTKP 320

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 43.8 bits (103), Expect = 8e-05
 Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 1/78 (1%)

Query: 211 MAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDS-LECFHKLQAIVPSMPE 269
             +E+  K  +     L +     +AL   G A     +YS        K   + P + E
Sbjct: 79  DVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVE 138

Query: 270 VLYQIASLYEITGDVEQA 287
              Q+  +Y   GDV  A
Sbjct: 139 AWNQLGEVYWKKGDVTSA 156

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 52.9 bits (128), Expect = 4e-08
 Identities = 22/117 (18%), Positives = 42/117 (35%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
               +Y ++   ++A+ M E+A  A   N   F  LG   +  E           A++ +
Sbjct: 96  GAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN 155

Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
               EA +  G+   +     ++L  F  +    P   +  Y     Y    + E+A
Sbjct: 156 ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA 212

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 23/117 (19%), Positives = 48/117 (41%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
           N + +     E+E+A    ++A   D+  + A+   GN  + +E Y + K+++  AL   
Sbjct: 62  NFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG 121

Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
               +  Y LG     L +   +L    +   +  +  E  +Q        G +++A
Sbjct: 122 MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 20/135 (14%), Positives = 48/135 (35%)

Query: 153 QAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMA 212
            +  ++     M S             G+ E+A +   +A   +  ++  ++N  N   +
Sbjct: 10  HSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSS 69

Query: 213 REDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLY 272
             +  +    Y  AL+ D++   A Y  G  +     Y ++ + F K         ++ Y
Sbjct: 70  VNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFY 129

Query: 273 QIASLYEITGDVEQA 287
            + ++       + A
Sbjct: 130 MLGTVLVKLEQPKLA 144

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 44.0 bits (105), Expect = 4e-05
 Identities = 18/113 (15%), Positives = 34/113 (30%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
            L  +     + + A    + A   +  ++ A    G C        +    +    + D
Sbjct: 130 MLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD 189

Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGD 283
               +A YN G+ + +      +LE   K   I P     L+    L      
Sbjct: 190 PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 53.4 bits (128), Expect = 5e-08
 Identities = 22/88 (25%), Positives = 38/88 (43%)

Query: 190 EEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNE 249
           EEA  A     A+ +NL  C +  + +    E    AL+ D+   + L   G AH  +N+
Sbjct: 186 EEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND 245

Query: 250 YSDSLECFHKLQAIVPSMPEVLYQIASL 277
           +  +   F K+  + P+      Q+A  
Sbjct: 246 FELARADFQKVLQLYPNNKAAKTQLAVC 273

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 53.5 bits (128), Expect = 6e-08
 Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 15/117 (12%)

Query: 176 YFLQGEVEQAEKMAEEACT---------------ADTYNSAAFVNLGNCAMAREDYVKGK 220
           YF  G+  QA     +  +               ++++  AAF+NL  C +   +Y K  
Sbjct: 278 YFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAV 337

Query: 221 ELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASL 277
           E    AL  D+   + LY  G A   +NE+  +   F K+  + P       QI+  
Sbjct: 338 ECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMC 394

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 50.5 bits (122), Expect = 1e-07
 Identities = 21/117 (17%), Positives = 47/117 (40%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
           +    +   G   QA  + E+   AD ++    ++LG   +      +G EL   +L + 
Sbjct: 13  DKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA 72

Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
              ++    LGL +  + +Y  ++    K+    P    V +++    +  G  ++A
Sbjct: 73  PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEA 129

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 50.1 bits (121), Expect = 2e-07
 Identities = 24/117 (20%), Positives = 47/117 (40%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
           +L   Y   G V++  ++ E +      N      LG   +  + Y     L +   + +
Sbjct: 47  HLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN 106

Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
                  + LG+A  +L  + ++++ F     + P+  +V   IA  YE  G  E+A
Sbjct: 107 PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 48.2 bits (116), Expect = 8e-07
 Identities = 15/90 (16%), Positives = 27/90 (30%)

Query: 198 YNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECF 257
                + + G        Y +   L     D DA  ++   +LG+A+          E  
Sbjct: 6   IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELL 65

Query: 258 HKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
            +  A  P   +V   +   Y      + A
Sbjct: 66  ERSLADAPDNVKVATVLGLTYVQVQKYDLA 95

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 12/89 (13%), Positives = 30/89 (33%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
            L   Y    + + A  +  +   A+  N      LG        + +  + +  AL   
Sbjct: 81  VLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR 140

Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHK 259
               +    +  +++ +  + ++L  F K
Sbjct: 141 PNEGKVHRAIAFSYEQMGRHEEALPHFKK 169

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 26/185 (14%), Positives = 61/185 (32%), Gaps = 26/185 (14%)

Query: 127 NSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSF-----IYFLQGE 181
              H  +   LE  K   +     V++ ++ +++  +  +      S        F Q E
Sbjct: 59  CFRHQLMLDYLEPGKT--YGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKE 116

Query: 182 VEQAEKMAEEA-----------CTADTYNSAAFV--NLGNCAMAREDYVKGKELYVHALD 228
             +A     EA             A+ +   A    ++    ++    ++  ++Y +   
Sbjct: 117 YVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL 176

Query: 229 NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV------PSMPEVLYQIASLYEITG 282
                I++L+ +   +     Y  +L        +         +   L  IA+ Y+ +G
Sbjct: 177 YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG 236

Query: 283 DVEQA 287
           D + A
Sbjct: 237 DDQMA 241

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 16/138 (11%), Positives = 37/138 (26%), Gaps = 26/138 (18%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEA-----------CTADTYNSAAFVNLGNCAMAREDYVKG 219
            ++  Y      ++A    E A             A +       N+ N      D    
Sbjct: 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLL-----NIANSYDRSGDDQMA 241

Query: 220 KELYVHALD-----NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQ- 273
            E +  A             + L+ L        +   + +   +    + +     Y+ 
Sbjct: 242 VEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE 301

Query: 274 ----IASLYEITGDVEQA 287
               + ++Y+ T D  + 
Sbjct: 302 LFLFLQAVYKETVDERKI 319

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 23/173 (13%), Positives = 46/173 (26%), Gaps = 23/173 (13%)

Query: 139 INKAVTFLRMNDVSQAVDVLKSC---------DEMTSSAATNLSFIYFLQGEVEQAEKMA 189
              A  +       +A+  L++          D   + +  N++  Y   G+ + A +  
Sbjct: 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245

Query: 190 EEAC-----TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALD--------NDATCIEA 236
           ++A                  L           K  +     LD                
Sbjct: 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLF 305

Query: 237 LYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASD 289
           L  +        +  D L  F K       +       A+++E +   EQA+ 
Sbjct: 306 LQAVYKETVDERKIHDLLSYFEKKNLH-AYIEACARSAAAVFESSCHFEQAAA 357

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 17/114 (14%), Positives = 37/114 (32%), Gaps = 3/114 (2%)

Query: 179 QGEVEQAEKMAEEACTADTY--NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEA 236
                ++    ++A    TY     A +N G C+  +  +   +     +L        A
Sbjct: 90  LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPA 149

Query: 237 LYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIA-SLYEITGDVEQASD 289
              L        +  D+   F K Q+ V  +      +   + +  G+ + A +
Sbjct: 150 FKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYE 203

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 1/87 (1%)

Query: 202 AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQ 261
               L    M  +DY +       AL +D     A       +++L     + E F +  
Sbjct: 10  IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQAL 69

Query: 262 AIVPSMPEVLYQIAS-LYEITGDVEQA 287
           +I P   E+       L        ++
Sbjct: 70  SIKPDSAEINNNYGWFLCGRLNRPAES 96

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 42.6 bits (101), Expect = 7e-05
 Identities = 25/121 (20%), Positives = 38/121 (31%), Gaps = 3/121 (2%)

Query: 170 TNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN 229
           T L+  Y    +  QA    E+A  +D  N  A++         +   K +E +  AL  
Sbjct: 12  TQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI 71

Query: 230 DATCIEALYNLGLAHK-HLNEYSDSLECFHK--LQAIVPSMPEVLYQIASLYEITGDVEQ 286
                E   N G      LN  ++S+  F K       P+               G    
Sbjct: 72  KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL 131

Query: 287 A 287
           A
Sbjct: 132 A 132

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 51.5 bits (123), Expect = 3e-07
 Identities = 23/159 (14%), Positives = 47/159 (29%), Gaps = 12/159 (7%)

Query: 168 AATNLSFIYFL---QGEVEQAEKMAEEACTADTYNSAAFVNLGN----CAMAREDYVKGK 220
             + L+   +        + A     +A   +  N    V L           E+  +G+
Sbjct: 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGE 233

Query: 221 ELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI 280
           +L   AL+      + L +    ++  +E   ++E   K    +P+   +  QI   Y  
Sbjct: 234 KLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYR- 292

Query: 281 TGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEKCI 319
                +   V             L +L        +K  
Sbjct: 293 ----AKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKAD 327

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 25/159 (15%), Positives = 48/159 (30%), Gaps = 19/159 (11%)

Query: 169 ATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALD 228
           A  L  +     E  + EK+ EEA       +    +       +++  K  EL   AL+
Sbjct: 216 ALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275

Query: 229 NDATCIEALYNLGLAHKH-------------------LNEYSDSLECFHKLQAIVPSMPE 269
                      +G  ++                    L     ++    K      ++  
Sbjct: 276 YIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFR 335

Query: 270 VLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLH 308
           V   +ASL+ +    E+A    +    + +   A   LH
Sbjct: 336 VCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLH 374

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 17/145 (11%), Positives = 42/145 (28%), Gaps = 13/145 (8%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEACTA--------DTYNSAAFVNLGNC--AMAREDYVKGK 220
           N +++Y+  G +   +   ++               +       G            + K
Sbjct: 99  NYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAK 158

Query: 221 ELYVHALDNDATCIEALYNLGLAHKHL---NEYSDSLECFHKLQAIVPSMPEVLYQIASL 277
             +  AL+      E    L +A   L       ++++   +   + P    +   +A  
Sbjct: 159 VCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALK 218

Query: 278 YEITGDVEQASDVNENLLLEAVRND 302
                +  +     E L+ EA+   
Sbjct: 219 LHKMREEGEEEGEGEKLVEEALEKA 243

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 15/133 (11%), Positives = 40/133 (30%), Gaps = 28/133 (21%)

Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTAD-----------TYNSAAFVNLGNCAMAREDY 216
             + L+ ++ L  + E+AE   ++  + +            Y +     +     A   +
Sbjct: 336 VCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHF 395

Query: 217 VKG-----------------KELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHK 259
           ++G                 +++    L  +    EAL+ L    +   +   + E   +
Sbjct: 396 IEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSER 455

Query: 260 LQAIVPSMPEVLY 272
                  +P    
Sbjct: 456 GLESGSLIPSASS 468

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 50.8 bits (121), Expect = 3e-07
 Identities = 15/92 (16%), Positives = 33/92 (35%)

Query: 186 EKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHK 245
           +   +    A    +   +N+  C +  + Y +        L  +    +AL+  G A  
Sbjct: 216 QLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKA 275

Query: 246 HLNEYSDSLECFHKLQAIVPSMPEVLYQIASL 277
            L +   + + F K Q   P    +  ++ +L
Sbjct: 276 ELGQMDSARDDFRKAQKYAPDDKAIRRELRAL 307

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 50.1 bits (119), Expect = 5e-07
 Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 6/147 (4%)

Query: 130 HSSLAQDLEINKAVTFLRMNDVSQAVDVLKSC-----DEMTSSAATNLSFIYFLQGEVEQ 184
           H   + +         L+++ +  A   LK       D   +  AT    +     +++ 
Sbjct: 125 HQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQD 184

Query: 185 AEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAH 244
           A  + +E     +           C MA+  +   + +   ALD D+   E L NL +  
Sbjct: 185 AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLS 244

Query: 245 KHLNEYSDSL-ECFHKLQAIVPSMPEV 270
           +HL +  +       +L+    S P +
Sbjct: 245 QHLGKPPEVTNRYLSQLKDAHRSHPFI 271

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 47.4 bits (114), Expect = 6e-07
 Identities = 37/117 (31%), Positives = 61/117 (52%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
           NL   Y+ QG+ ++A +  ++A   D  ++ A+ NLGN    + DY +  E Y  AL+ D
Sbjct: 6   NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65

Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
               EA YNLG A+    +Y +++E + K   + P   E  Y + + Y   GD ++A
Sbjct: 66  PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 122

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 40.8 bits (97), Expect = 1e-04
 Identities = 31/95 (32%), Positives = 51/95 (53%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
           NL   Y+ QG+ ++A +  ++A   D  ++ A+ NLGN    + DY +  E Y  AL+ D
Sbjct: 40  NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 99

Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP 265
               EA YNLG A+    +Y +++E + K   + P
Sbjct: 100 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 40.4 bits (96), Expect = 1e-04
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 5/93 (5%)

Query: 195 ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSL 254
           A+ +      NLGN    + DY +  E Y  AL+ D    EA YNLG A+    +Y +++
Sbjct: 1   AEAWY-----NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAI 55

Query: 255 ECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
           E + K   + P   E  Y + + Y   GD ++A
Sbjct: 56  EYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 88

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 47.8 bits (114), Expect = 7e-07
 Identities = 17/97 (17%), Positives = 34/97 (35%)

Query: 175 IYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCI 234
           +  L   + + +    E    D  N   + N+  C +   D  + +E     L  + T  
Sbjct: 38  LTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNE 97

Query: 235 EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVL 271
           +AL+    A     +  ++ E    L    P+   V+
Sbjct: 98  KALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVV 134

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 48.2 bits (115), Expect = 8e-07
 Identities = 17/88 (19%), Positives = 34/88 (38%)

Query: 190 EEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNE 249
                      +  +NL  C    +DY K  +     L  D   ++ALY LG+A+ +   
Sbjct: 78  ILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF 137

Query: 250 YSDSLECFHKLQAIVPSMPEVLYQIASL 277
             ++ E  +K  ++ P+  ++       
Sbjct: 138 LEEAKENLYKAASLNPNNLDIRNSYELC 165

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 47.9 bits (114), Expect = 9e-07
 Identities = 17/112 (15%), Positives = 35/112 (31%), Gaps = 3/112 (2%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYV---KGKELYVHAL 227
            L   Y  Q +   +     +A      N+  +  L      +       + + +   AL
Sbjct: 49  LLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKAL 108

Query: 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE 279
             D+  I AL  L         Y+ ++E + K+  +          + S+  
Sbjct: 109 ALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINM 160

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 3/112 (2%)

Query: 179 QGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALY 238
           Q   E   +  ++   A+  NS  +  LG   + + DY      Y  AL       E   
Sbjct: 23  QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYA 82

Query: 239 NLGLAHKHLNEYSDS---LECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
            L     +      +        K  A+  +    L  +AS   +  +  QA
Sbjct: 83  ALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQA 134

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 5/122 (4%)

Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHA- 226
                      +G +EQA  + ++A   +   +   +  G       +  K +     A 
Sbjct: 86  LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQAL 145

Query: 227 -LDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVE 285
            L++     E    L   +  +    ++L  + K     P   ++  + AS   + G  E
Sbjct: 146 ALEDTP---EIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAE 202

Query: 286 QA 287
           +A
Sbjct: 203 EA 204

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 20/128 (15%), Positives = 38/128 (29%), Gaps = 12/128 (9%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGN------CAMAREDYVKGK---- 220
            L+      G V  A +  +            ++ L              +  KG     
Sbjct: 44  WLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQA 103

Query: 221 -ELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE 279
             +   A   +          GL +  L E   +     +  A+  + PE+   +A LY 
Sbjct: 104 LSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT-PEIRSALAELYL 162

Query: 280 ITGDVEQA 287
             G +++A
Sbjct: 163 SMGRLDEA 170

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 23/109 (21%), Positives = 35/109 (32%), Gaps = 2/109 (1%)

Query: 199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFH 258
                + LG    A   Y     L+  AL  +    EALY L      L   + +LE   
Sbjct: 4   AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGK 63

Query: 259 KLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVR--NDALS 305
            L A  P        ++  Y       +  +  +  L +A+    DA  
Sbjct: 64  TLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER 112

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 27/199 (13%), Positives = 57/199 (28%), Gaps = 47/199 (23%)

Query: 130 HSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEM-----------TSSAATNLSFIYFL 178
           H  +A  L    A+ +   N    A ++L     +            ++   NL+ +Y  
Sbjct: 65  HPDVATMLN-ILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 123

Query: 179 QGEVEQAEKMAEEA-------------CTADTYNSAAFVNLGNCAMAREDYVKGKELYVH 225
           +G+ ++AE + + A               A   N     NL      +  Y + +  Y  
Sbjct: 124 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN-----NLALLCQNQGKYEEVEYYYQR 178

Query: 226 AL--------DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV---------PSMP 268
           AL         +D    +   NL   +    ++  +   + ++                 
Sbjct: 179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238

Query: 269 EVLYQIASLYEITGDVEQA 287
            +        E  G  +  
Sbjct: 239 PIWMHAEEREECKGKQKDG 257

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 26/152 (17%), Positives = 42/152 (27%), Gaps = 34/152 (22%)

Query: 165 TSSAATNLSFIYFLQGEVEQAEKMAEEA-------------CTADTYNSAAFVNLGNCAM 211
                 NL   Y  QG  E A  + ++A               A   N      L     
Sbjct: 26  RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLN-----ILALVYR 80

Query: 212 AREDYVKGKELYVHAL--------DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI 263
            +  Y     L   AL         +       L NL + +    +Y ++     +   I
Sbjct: 81  DQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 140

Query: 264 V--------PSMPEVLYQIASLYEITGDVEQA 287
                    P + + L  +A L +  G  E+ 
Sbjct: 141 REKVLGKDHPDVAKQLNNLALLCQNQGKYEEV 172

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 43.7 bits (104), Expect = 6e-05
 Identities = 15/113 (13%), Positives = 30/113 (26%), Gaps = 25/113 (22%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEA--------------CTADTYNSAAFVNLGNCAMAREDY 216
           NL+  Y  QG+ +QAE + +E                    +      +       +   
Sbjct: 200 NLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM-----HAEEREECKGKQ 254

Query: 217 VKGKELYVHAL------DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI 263
             G     +         +  T    L NLG  ++   ++  +          
Sbjct: 255 KDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 17/104 (16%), Positives = 33/104 (31%)

Query: 176 YFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIE 235
                  E A     +A   +  N+  F N         +Y    +    A+  D    +
Sbjct: 22  QMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSK 81

Query: 236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE 279
           A   +GLA   LN++ +++  + K   + P        +     
Sbjct: 82  AYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 38.7 bits (91), Expect = 7e-04
 Identities = 14/92 (15%), Positives = 32/92 (34%)

Query: 196 DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLE 255
           D+  +      GN  M  E++      Y  A++ +        N   A+  L  Y+ +++
Sbjct: 8   DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQ 67

Query: 256 CFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
              +   I P+  +   ++           +A
Sbjct: 68  DCERAICIDPAYSKAYGRMGLALSSLNKHVEA 99

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 22/179 (12%), Positives = 49/179 (27%), Gaps = 12/179 (6%)

Query: 169 ATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALD 228
           A  L      +  + + E++       D   +      G    +       +  +  AL 
Sbjct: 12  AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 71

Query: 229 NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQAS 288
                 E    LG+       +  + E F  +  + P+               G  + A 
Sbjct: 72  IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA- 130

Query: 289 DVNENLLLEAVR---NDALSQLHR-----EMKHEAEKCILTSAKLIAPSIEDNFSNGYN 339
              ++ LL   +   ND    L       ++  +  K +L      +   +  ++    
Sbjct: 131 ---QDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEF 186

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 22/174 (12%), Positives = 44/174 (25%), Gaps = 39/174 (22%)

Query: 165 TSSAATNLSFIYFLQGEVEQAEKMAEEA-------------CTADTYNSAAFVNLGNCAM 211
            ++   NL+ +Y  +G+ ++AE + + A               A   N     NL     
Sbjct: 84  VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLN-----NLALLCQ 138

Query: 212 AREDYVKGKELYVHAL--------DNDATCIEALYNLGLAHKHLNEYSDSLECFHK-LQA 262
            +    + +  Y  AL         +D    +   NL   +    +Y D+   + + L  
Sbjct: 139 NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198

Query: 263 IV--------PSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLH 308
                          +        E       +               A     
Sbjct: 199 AHEKEFGSVNGDNKPIWMHAEEREESKDKRRDS----APYGEYGSWYKACKVDS 248

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 47.1 bits (113), Expect = 4e-06
 Identities = 26/152 (17%), Positives = 49/152 (32%), Gaps = 34/152 (22%)

Query: 165 TSSAATNLSFIYFLQGEVEQAEKMAEEAC-------------TADTYNSAAFVNLGNCAM 211
            ++    L+ +Y  Q + ++A  +  +A               A T N     NL     
Sbjct: 42  VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLN-----NLAVLYG 96

Query: 212 AREDYVKGKELYVHAL--------DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI 263
            R  Y + + L   AL               + L NL L  ++  +  +    + +   I
Sbjct: 97  KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156

Query: 264 V--------PSMPEVLYQIASLYEITGDVEQA 287
                    P++ +    +AS Y   G  + A
Sbjct: 157 YATRLGPDDPNVAKTKNNLASCYLKQGKYQDA 188

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 12/113 (10%), Positives = 29/113 (25%), Gaps = 25/113 (22%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEA--------------CTADTYNSAAFVNLGNCAMAREDY 216
           NL+  Y  QG+ + AE + +E                    +      +      +++  
Sbjct: 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWM-----HAEEREESKDKR 228

Query: 217 VKGKELYVHAL------DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI 263
                   +         +  T    L +LG  ++   +   +          
Sbjct: 229 RDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 13/91 (14%), Positives = 33/91 (36%)

Query: 176 YFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIE 235
            F+  +  +A      A T +   +  + N   C +  +   +       AL+ D   ++
Sbjct: 19  LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK 78

Query: 236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266
           A + LG     +  Y +++    +  ++   
Sbjct: 79  AHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 14/91 (15%), Positives = 28/91 (30%)

Query: 176 YFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIE 235
           YF + +   A K   E       ++  + N          + +       A++ D   + 
Sbjct: 14  YFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR 73

Query: 236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266
           A      A   + EY+ +LE     +     
Sbjct: 74  AYIRKATAQIAVKEYASALETLDAARTKDAE 104

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 21/166 (12%), Positives = 44/166 (26%), Gaps = 19/166 (11%)

Query: 162 DEMTSSAATNLSFIYFLQGEVEQAEKMAEEA-----CTADTYNSAAFVNLGNCAMAREDY 216
           D M +      + +    G  ++AE++A+ A              A   LG     + + 
Sbjct: 10  DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGEL 69

Query: 217 VKGKELYVHAL------DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV------ 264
            +   L           D     + +L               + E   K   ++      
Sbjct: 70  TRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE 129

Query: 265 --PSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLH 308
             P    ++   A L      +++A     + +          QL 
Sbjct: 130 QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 18/91 (19%), Positives = 30/91 (32%)

Query: 176 YFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIE 235
              + E  +A  +  +A +    N     N      A   + K  E    A   D    +
Sbjct: 21  AMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK 80

Query: 236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266
           A   LGLA   + +Y  + E + K      +
Sbjct: 81  AWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 43.8 bits (103), Expect = 5e-05
 Identities = 13/91 (14%), Positives = 33/91 (36%)

Query: 176 YFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIE 235
            F+  +  +A      A T +   +  + N   C +  +   +       AL+ D   ++
Sbjct: 14  LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK 73

Query: 236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266
           A + LG     +  Y +++    +  ++   
Sbjct: 74  AHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 41.8 bits (99), Expect = 6e-05
 Identities = 16/95 (16%), Positives = 37/95 (38%)

Query: 176 YFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIE 235
            F +G+  QA K   EA   +  ++  + N   C     ++    +     +  + T I+
Sbjct: 26  CFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK 85

Query: 236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEV 270
                  A + + +Y+ +++ + K   +  S  E 
Sbjct: 86  GYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 41.6 bits (99), Expect = 6e-05
 Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 2/93 (2%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
           NL   Y+ QG+ ++A +  ++A   D  N+ A+ NLGN    + DY +  E Y  AL+ D
Sbjct: 14  NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73

Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI 263
               EA YNLG A+    +Y +++E + K  A+
Sbjct: 74  PNNAEAWYNLGNAYYKQGDYDEAIEYYQK--AL 104

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 39.7 bits (94), Expect = 3e-04
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 5/93 (5%)

Query: 195 ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSL 254
           A+ +      NLGN    + DY +  E Y  AL+ D    EA YNLG A+    +Y +++
Sbjct: 9   AEAWY-----NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63

Query: 255 ECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
           E + K   + P+  E  Y + + Y   GD ++A
Sbjct: 64  EYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 96

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 195 ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSL 254
           A         +LGN A  ++D+ K    Y  A++ D + I    N    +    ++++ +
Sbjct: 8   AIAEK-----DLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECV 62

Query: 255 ECFHKLQAIVPSMPEVLYQIASLY 278
           +   K   +          IA   
Sbjct: 63  QFCEKAVEVGRETRADYKLIAKAM 86

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 2/74 (2%)

Query: 195 ADTYN--SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSD 252
              YN  +A +      A   +   K  E+      +     +A+   G A +  N+ S 
Sbjct: 42  ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSL 101

Query: 253 SLECFHKLQAIVPS 266
           +++ FH+  +    
Sbjct: 102 AVQWFHRSLSEFRD 115

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 41.0 bits (97), Expect = 8e-05
 Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 14/109 (12%)

Query: 176 YFLQGEVEQAEKMAEEACTADTYN-------SAAFVNLGNCAMAREDYVKGKELYVHALD 228
               G ++ A +   EA   D +N       SAA+   G+   A ED  K  +L      
Sbjct: 14  ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL------ 67

Query: 229 NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASL 277
                 +       A + LN + ++   + +      + P++   + ++
Sbjct: 68  -KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 12/128 (9%)

Query: 205 NLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHK----- 259
            LGN A  ++D+    + Y  A + D T +  + N    +    +Y+   E   K     
Sbjct: 9   ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG 68

Query: 260 --LQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEK 317
              +     + +   +I + Y      + A       L E    D L +       +AEK
Sbjct: 69  RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKC-----QQAEK 123

Query: 318 CILTSAKL 325
            +    +L
Sbjct: 124 ILKEQERL 131

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 17/98 (17%), Positives = 39/98 (39%), Gaps = 7/98 (7%)

Query: 176 YFLQGEVEQAEKMAEEACTADTYN-------SAAFVNLGNCAMAREDYVKGKELYVHALD 228
            + + + + A K  ++A   D  N       +A +   G+    RE   K  E+     +
Sbjct: 14  AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE 73

Query: 229 NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266
           +     +A   +G ++    +Y D++  ++K  A   +
Sbjct: 74  DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 18/75 (24%), Positives = 33/75 (44%)

Query: 203 FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQA 262
            +N+G C +   D+    +  + AL+ D +  +ALY      + L EY  +L    K Q 
Sbjct: 276 VLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335

Query: 263 IVPSMPEVLYQIASL 277
           I P    +  ++  +
Sbjct: 336 IAPEDKAIQAELLKV 350

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 20/139 (14%), Positives = 40/139 (28%), Gaps = 7/139 (5%)

Query: 134 AQDLEINKAVTFLRMNDVSQAVDVLKSCDEM--TSSAATNLSFIYFLQGEVEQAEKMAEE 191
              + +  A       + + A++ L++          A   + +Y             + 
Sbjct: 101 PLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKS 160

Query: 192 ACTAD--TYNSAAFVNLGNCAMAREDYVKGKELYVHALDND---ATCIEALYNLGLAHKH 246
           A          AA V  G  A     + + +     A D+    A      + L +A + 
Sbjct: 161 AGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS 220

Query: 247 LNEYSDSLECFHKLQAIVP 265
               S ++     LQ   P
Sbjct: 221 QGNESAAVALLEWLQTTHP 239

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 3/59 (5%)

Query: 229 NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
            D       Y L   H   +  S +L  F +L    P      Y +  LYE     + A
Sbjct: 5   EDP---FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDA 60

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 22/128 (17%), Positives = 38/128 (29%), Gaps = 10/128 (7%)

Query: 179 QGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALY 238
           +     A  +  +A      N    + L    +A       + +       D    +  Y
Sbjct: 130 ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ---DTRY 186

Query: 239 NLGLAHKHLNEYSDSLECFHKLQAIVPSMP---EVLYQIASLYEITGDVEQASDVNENLL 295
              +A   L   +       +LQ  V   P    +  Q+A      G  E+A +    LL
Sbjct: 187 QGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALE----LL 242

Query: 296 LEAVRNDA 303
              +R D 
Sbjct: 243 FGHLRXDL 250

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 38.6 bits (91), Expect = 4e-04
 Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 2/91 (2%)

Query: 199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFH 258
           N   +   G       +Y +  +L+  A+  D    +     G A  +L  Y ++++C++
Sbjct: 5   NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYN 64

Query: 259 KLQAIVP--SMPEVLYQIASLYEITGDVEQA 287
            +  ++      +V    A         E  
Sbjct: 65  YVINVIEDEYNKDVWAAKADALRYIEGKEVE 95

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 37.8 bits (89), Expect = 9e-04
 Identities = 12/91 (13%), Positives = 29/91 (31%), Gaps = 2/91 (2%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALD-- 228
               + +  G   ++  + E+A   D   S  ++  G      E Y +  + Y + ++  
Sbjct: 11  LEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI 70

Query: 229 NDATCIEALYNLGLAHKHLNEYSDSLECFHK 259
            D    +       A +++       E    
Sbjct: 71  EDEYNKDVWAAKADALRYIEGKEVEAEIAEA 101

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 14/102 (13%)

Query: 176 YFLQGEVEQAEKMAEEACTADTYN-------SAAFVNLGNCAMAREDYVKGKELYVHALD 228
           YF +G+   A +   EA   D  N       +A    L     A +D           + 
Sbjct: 23  YFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT-------CIR 75

Query: 229 NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEV 270
            D+  I+           + E+S +   +     + PS  E 
Sbjct: 76  LDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 21/166 (12%), Positives = 53/166 (31%), Gaps = 11/166 (6%)

Query: 149 NDVSQAVDVLKSCDEMTSSAATNLSFIYFL-QGEVEQAEKMAEEACT--ADTYNSAAFVN 205
             + QA    ++  + +  A   L  +     G  E     AE               + 
Sbjct: 52  AQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIP 111

Query: 206 LGNCAM----AREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKL- 260
           L    +    +  +    +++            EA     L ++    Y   L+   ++ 
Sbjct: 112 LAMLYLQYPHSFPNVNAQQQISQWQAAGYP---EAGLAQVLLYRTQGTYDQHLDDVERIC 168

Query: 261 QAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQ 306
           +A + +      ++A++Y+     EQ +++ + +     R    +Q
Sbjct: 169 KAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ 214

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 40.8 bits (95), Expect = 7e-04
 Identities = 14/120 (11%), Positives = 32/120 (26%)

Query: 175 IYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCI 234
           +  LQ ++ +              N   + +         D  +  E     L+ DA   
Sbjct: 141 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY 200

Query: 235 EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENL 294
            A  +     +    + + L+   +L         V  Q   +   T      + +   +
Sbjct: 201 HAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREV 260

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	425
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.97
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.96
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.96
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.96
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.96
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.96
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.96
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.96
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.95
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.95
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.95
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.95
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.95
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.95
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.95
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.95
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.94
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.94
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.94
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.94
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.94
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.94
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.94
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.93
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.93
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.93
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.92
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.92
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.92
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.91
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.91
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.91
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.91
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.9
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.9
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.9
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.9
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.9
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.9
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.9
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.9
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.9
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.89
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.89
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.89
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.89
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.89
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.89
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.89
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.88
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.88
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.88
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.88
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.87
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.87
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.87
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.87
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.87
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.87
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.87
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.86
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.85
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.85
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.85
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.85
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.85
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.84
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.84
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.83
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.83
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.83
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.83
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.83
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.82
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.82
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.82
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.82
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.81
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.81
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.81
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.8
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.8
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.79
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.79
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.79
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.78
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.78
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.77
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.77
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.76
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.76
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.76
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.75
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.75
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.75
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.75
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.74
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.73
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.73
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.73
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.73
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.72
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.72
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.72
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.72
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.72
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.71
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.71
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.7
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.7
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.7
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.69
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.69
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.69
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.69
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.69
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.68
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.68
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.68
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.68
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.68
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.68
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.67
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.67
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.67
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.67
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.67
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.66
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.65
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.65
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.64
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.64
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.64
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.64
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.64
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.63
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.63
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.63
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.63
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.63
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.63
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.63
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.63
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.62
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.62
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.61
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.59
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.59
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.59
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.58
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.58
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.58
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.58
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.58
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.57
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.57
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.56
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.56
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.56
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.55
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.55
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.54
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.54
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.53
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.53
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.53
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.52
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.51
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.51
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.51
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.51
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.5
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.5
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.49
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.49
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.48
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.48
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.47
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.47
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.46
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.46
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.44
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.43
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.43
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.39
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.39
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.33
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.32
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.31
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.31
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.3
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.28
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.22
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.2
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.19
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.19
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.18
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.18
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.16
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.14
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.13
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.1
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.99
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.85
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.82
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.8
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.77
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.77
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.76
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.73
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.72
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.71
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.69
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.68
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.66
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.64
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.59
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.46
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.42
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.28
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.27
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.94
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.93
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.77
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.76
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.69
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.54
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.5
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	97.25
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.24
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.17
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	97.11
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.79
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.64
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	96.5
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.39
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.31
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.96
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	95.83
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.75
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	95.74
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.62
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.6
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.55
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.54
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.45
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.3
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.97
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.87
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.83
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	94.36
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	93.9
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	93.19
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	92.85
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	92.24
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	91.52
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.07
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	90.67
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	90.55
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	88.49
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	88.17
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	86.5
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	84.86
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	84.2
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	83.94
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	82.95
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	80.05

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=2e-32  Score=258.66  Aligned_cols=349  Identities=14%  Similarity=0.047  Sum_probs=203.5

Q ss_pred             HHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHHHHHH
Q psy1863          18 LIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEAEK   97 (425)
Q Consensus        18 l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~   97 (425)
                      +++.|..+...|++++|++.+.++++..        |........++..+...|++.                   .+..
T Consensus         2 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~~~-------------------~a~~   54 (388)
T 1w3b_A            2 PMELAHREYQAGDFEAAERHCMQLWRQE--------PDNTGVLLLLSSIHFQCRRLD-------------------RSAH   54 (388)
T ss_dssp             CCTHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHH-------------------HHHH
T ss_pred             hhhHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHH-------------------HHHH
Confidence            4567888999999999999998887765        555444445555555545433                   1111


Q ss_pred             HHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHH
Q psy1863          98 CILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSF  174 (425)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~  174 (425)
                      .+..+.+.                         .+...+.+..+|.++...|++++|+..|++++   |..+.++..+|.
T Consensus        55 ~~~~a~~~-------------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  109 (388)
T 1w3b_A           55 FSTLAIKQ-------------------------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAA  109 (388)
T ss_dssp             HHHHHHHH-------------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHhc-------------------------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence            11111110                         01123344566666666666666666666665   556666666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHH
Q psy1863         175 IYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSL  254 (425)
Q Consensus       175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~  254 (425)
                      ++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+|+++.++.++|.++...|++++|+
T Consensus       110 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  189 (388)
T 1w3b_A          110 ALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI  189 (388)
T ss_dssp             HHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcC
Q psy1863         255 ECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIA  327 (425)
Q Consensus       255 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~  327 (425)
                      ..|+++++.+|+++.++..+|.++...|++++|+..|++ ++..+|+++  +..++.+     ++++|+..++++++..|
T Consensus       190 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  268 (388)
T 1w3b_A          190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR-ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP  268 (388)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            666666666666666666666666666666666666666 666666655  4455544     56666666666666666


Q ss_pred             CchhhHhhchHHHHHHHhHHhhc---------hhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHH
Q psy1863         328 PSIEDNFSNGYNWCVQSIRNSAH---------SSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFL  398 (425)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l  398 (425)
                      .....+..+|..+...+....+.         .+.....+..+|.++...|++++|+..++++.+..   |++......+
T Consensus       269 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l  345 (388)
T 1w3b_A          269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF---PEFAAAHSNL  345 (388)
T ss_dssp             SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC---TTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHH
Confidence            66555555543333222221111         12233455566666666666666666666664433   3333333333


Q ss_pred             hhhccCcCCCCcHHHHHHhHhHHh
Q psy1863         399 VSSEFQYLPTSEVPIYLENLLTVL  422 (425)
Q Consensus       399 ~~~~~~~~~~~ea~~~~~~~l~~~  422 (425)
                      ..........++|..+++++++..
T Consensus       346 ~~~~~~~g~~~~A~~~~~~a~~~~  369 (388)
T 1w3b_A          346 ASVLQQQGKLQEALMHYKEAIRIS  369 (388)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhC
Confidence            333333345666666666665543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=2e-30  Score=244.92  Aligned_cols=321  Identities=17%  Similarity=0.121  Sum_probs=238.7

Q ss_pred             HHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHHHH
Q psy1863          16 IGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEA   95 (425)
Q Consensus        16 ~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~   95 (425)
                      ..+...+..+...|++++|...++.+++..        |........++..|...|++.                   ++
T Consensus        34 ~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--------p~~~~~~~~lg~~~~~~g~~~-------------------~A   86 (388)
T 1w3b_A           34 GVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--------PLLAEAYSNLGNVYKERGQLQ-------------------EA   86 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHH-------------------HH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCchHHHHHHHHHHHHCCCHH-------------------HH
Confidence            345666778889999999999999988765        555555666666776666544                   23


Q ss_pred             HHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHH
Q psy1863          96 EKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNL  172 (425)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l  172 (425)
                      ...+..+..+     .+                    .....+..+|.++...|++++|+..|++++   |..+.++..+
T Consensus        87 ~~~~~~al~~-----~p--------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  141 (388)
T 1w3b_A           87 IEHYRHALRL-----KP--------------------DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDL  141 (388)
T ss_dssp             HHHHHHHHHH-----CT--------------------TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             HHHHHHHHHc-----Cc--------------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            3322222211     11                    112344677888888888888888888877   7777788888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHH
Q psy1863         173 SFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSD  252 (425)
Q Consensus       173 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~  252 (425)
                      |.++...|++++|+..|++++..+|+++.++.++|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++
T Consensus       142 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~  221 (388)
T 1w3b_A          142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDR  221 (388)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhh
Q psy1863         253 SLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKL  325 (425)
Q Consensus       253 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~  325 (425)
                      |+..|++++..+|+++.++..+|.++...|++++|+..|++ +++.+|+++  +..++.+     ++++|+..++++++.
T Consensus       222 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  300 (388)
T 1w3b_A          222 AVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR-AIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL  300 (388)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            88888888888888888888888888888888888888888 888888777  6666666     778888888888888


Q ss_pred             cCCchhhHhhchHHHHHHHhHHh---------hchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCc
Q psy1863         326 IAPSIEDNFSNGYNWCVQSIRNS---------AHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAA  389 (425)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  389 (425)
                      .|.+...+..+|..+...+....         ...+.....+..+|.++...|++++|+..|+++.+..|..+
T Consensus       301 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~  373 (388)
T 1w3b_A          301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA  373 (388)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence            88777766666543332222111         12233456788899999999999999999999977665443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.97  E-value=3e-27  Score=219.70  Aligned_cols=299  Identities=12%  Similarity=0.070  Sum_probs=246.7

Q ss_pred             HHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHH
Q psy1863          14 EIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKH   93 (425)
Q Consensus        14 ~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~   93 (425)
                      .+..++..|..+...|+|++|++.++++++..        |........++..+...|++.                   
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~~a~~~~~~~~~~-------------------   54 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--------PDNYIAYYRRATVFLAMGKSK-------------------   54 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHH-------------------
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------cccHHHHHHHHHHHHHccCHH-------------------
Confidence            35678999999999999999999999998866        544444455555555544433                   


Q ss_pred             HHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---c---chHH
Q psy1863          94 EAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---E---MTSS  167 (425)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~---~~~~  167 (425)
                      .+...+..+...                      .   +.....+..+|.++...|++++|+..|++++   |   ..+.
T Consensus        55 ~A~~~~~~~~~~----------------------~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  109 (359)
T 3ieg_A           55 AALPDLTKVIAL----------------------K---MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKE  109 (359)
T ss_dssp             HHHHHHHHHHHH----------------------C---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHH
T ss_pred             HHHHHHHHHHHh----------------------C---CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHH
Confidence            222222222111                      1   1123556889999999999999999999998   7   7888


Q ss_pred             HHHHH------------HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHH
Q psy1863         168 AATNL------------SFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIE  235 (425)
Q Consensus       168 ~~~~l------------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  235 (425)
                      ++..+            |.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++..+|.++.
T Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  189 (359)
T 3ieg_A          110 AESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTE  189 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            88777            789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLY------------QIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       236 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      ++..+|.++...|++++|+..++++++..|+++.++.            .+|.++...|++++|+..+++ +++..|+++
T Consensus       190 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~-~~~~~~~~~  268 (359)
T 3ieg_A          190 AFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES-VMKTEPSVA  268 (359)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCCSSH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCCch
Confidence            9999999999999999999999999999999888654            448889999999999999999 999999977


Q ss_pred             ------HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHH
Q psy1863         304 ------LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVS  372 (425)
Q Consensus       304 ------~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  372 (425)
                            +..+|.+     ++++|+..++++++..|.+.                         .++..+|.++...|+++
T Consensus       269 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~g~~~  323 (359)
T 3ieg_A          269 EYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNV-------------------------NALKDRAEAYLIEEMYD  323 (359)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------------------------HHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccH-------------------------HHHHHHHHHHHHcCCHH
Confidence                  3345555     89999999999999888764                         35566789999999999


Q ss_pred             HHHHHHHHHHhhccCCcc
Q psy1863         373 QAVDVLKSCDEMTSSAAT  390 (425)
Q Consensus       373 ~A~~~~~~~~~~~~~~~~  390 (425)
                      +|+..|+++.+..|..+.
T Consensus       324 ~A~~~~~~a~~~~p~~~~  341 (359)
T 3ieg_A          324 EAIQDYEAAQEHNENDQQ  341 (359)
T ss_dssp             HHHHHHHHHHTTCTTCHH
T ss_pred             HHHHHHHHHHhcCCCChH
Confidence            999999999877766544

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.96  E-value=6.8e-27  Score=224.83  Aligned_cols=305  Identities=12%  Similarity=0.070  Sum_probs=240.6

Q ss_pred             HHHHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHH
Q psy1863           9 ERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLH   88 (425)
Q Consensus         9 ~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~   88 (425)
                      ...+..+..+...|..+...|++++|++.++++++..        |........++..|...|++.              
T Consensus        20 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~l~~~~~~~g~~~--------------   77 (450)
T 2y4t_A           20 FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD--------PDNYIAYYRRATVFLAMGKSK--------------   77 (450)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHH--------------
T ss_pred             cccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHCCCHH--------------
Confidence            3344567789999999999999999999999988755        444444455555555555433              


Q ss_pred             HHHHHHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cch
Q psy1863          89 REMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMT  165 (425)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~  165 (425)
                           ++...+..+...                      .   +.....+..+|.++...|++++|+..|++++   |..
T Consensus        78 -----~A~~~~~~al~~----------------------~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  127 (450)
T 2y4t_A           78 -----AALPDLTKVIQL----------------------K---MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE  127 (450)
T ss_dssp             -----HHHHHHHHHHHH----------------------C---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCH
T ss_pred             -----HHHHHHHHHHhc----------------------C---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence                 222222222111                      1   1124456788999999999999999999987   666


Q ss_pred             H---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q psy1863         166 S---SAATNL------------SFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND  230 (425)
Q Consensus       166 ~---~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  230 (425)
                      +   .++..+            |.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..|++++..+
T Consensus       128 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  207 (450)
T 2y4t_A          128 NEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK  207 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            5   665544            6668999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhc
Q psy1863         231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQI------------ASLYEITGDVEQASDVNENLLLEA  298 (425)
Q Consensus       231 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~a~~~  298 (425)
                      |+++.++..+|.++...|++++|+..|++++...|++..++..+            |.++...|++++|+.+|++ +++.
T Consensus       208 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~-~l~~  286 (450)
T 2y4t_A          208 NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES-VMKT  286 (450)
T ss_dssp             CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhc
Confidence            99999999999999999999999999999999999888877666            8889999999999999999 9999


Q ss_pred             CcchH------HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHh
Q psy1863         299 VRNDA------LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLR  367 (425)
Q Consensus       299 ~p~~~------~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  367 (425)
                      .|+++      +..++.+     ++++|+..++++++..|.+.                         .++..+|.++..
T Consensus       287 ~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~-------------------------~~~~~l~~~~~~  341 (450)
T 2y4t_A          287 EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNV-------------------------NALKDRAEAYLI  341 (450)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH-------------------------HHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH-------------------------HHHHHHHHHHHH
Confidence            88864      4555555     88999999999988887654                         355667899999


Q ss_pred             cCCHHHHHHHHHHHHhhccCCccc
Q psy1863         368 MNDVSQAVDVLKSCDEMTSSAATN  391 (425)
Q Consensus       368 ~g~~~~A~~~~~~~~~~~~~~~~~  391 (425)
                      .|++++|+..++++.+..|..+..
T Consensus       342 ~~~~~~A~~~~~~al~~~p~~~~~  365 (450)
T 2y4t_A          342 EEMYDEAIQDYETAQEHNENDQQI  365 (450)
T ss_dssp             TTCHHHHHHHHHHHHTTSSSCHHH
T ss_pred             hcCHHHHHHHHHHHHHhCcchHHH
Confidence            999999999999998877665543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.96  E-value=1.9e-26  Score=214.22  Aligned_cols=286  Identities=10%  Similarity=0.007  Sum_probs=224.7

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM  211 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  211 (425)
                      .+.++.+|..++..|++++|+..|++++   |.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++.
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL   82 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence            3456788888999999999999998888   7888889999999999999999999999999989988889999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCc---CcHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy1863         212 AREDYVKGKELYVHALDNDA---TCIEALYNL------------GLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIAS  276 (425)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~~---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  276 (425)
                      ..|++++|+..|++++..+|   +++.++..+            |.++...|++++|+..+++++...|.++.++..+|.
T Consensus        83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  162 (359)
T 3ieg_A           83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE  162 (359)
T ss_dssp             HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            99999999999999999888   777777776            688888999999999999999999988889999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhc------------h
Q psy1863         277 LYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSN------------G  337 (425)
Q Consensus       277 ~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~------------~  337 (425)
                      ++...|++++|+..+++ +++..|+++  +..++.+     ++++|...++++++..|.....+...            |
T Consensus       163 ~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a  241 (359)
T 3ieg_A          163 CFIKEGEPRKAISDLKA-ASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA  241 (359)
T ss_dssp             HHHHTTCHHHHHHHHHH-HHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999 888888888  6777766     88889999999998888876644322            1


Q ss_pred             HHHHHHHhHHhhch---------hh----hcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccC
Q psy1863         338 YNWCVQSIRNSAHS---------SL----AQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQ  404 (425)
Q Consensus       338 ~~~~~~~~~~~~~~---------~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~  404 (425)
                      ..+...+....+..         +.    ...++..+|.++...|++++|+..++++.+..|..+   ...+.+......
T Consensus       242 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~  318 (359)
T 3ieg_A          242 EELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNV---NALKDRAEAYLI  318 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHH
Confidence            11111111111111         11    124466799999999999999999999987765443   344444444444


Q ss_pred             cCCCCcHHHHHHhHhHHhhc
Q psy1863         405 YLPTSEVPIYLENLLTVLQY  424 (425)
Q Consensus       405 ~~~~~ea~~~~~~~l~~~~~  424 (425)
                      .....+|..++++++++.|.
T Consensus       319 ~g~~~~A~~~~~~a~~~~p~  338 (359)
T 3ieg_A          319 EEMYDEAIQDYEAAQEHNEN  338 (359)
T ss_dssp             TTCHHHHHHHHHHHHTTCTT
T ss_pred             cCCHHHHHHHHHHHHhcCCC
Confidence            55788999999999887653

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4e-27  Score=230.11  Aligned_cols=261  Identities=14%  Similarity=0.100  Sum_probs=157.7

Q ss_pred             hHHHHHHHHHHHH---cCCHHHHHHHHHhcc-----------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1863         135 QDLEINKAVTFLR---MNDVSQAVDVLKSCD-----------------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACT  194 (425)
Q Consensus       135 ~~~~~~~a~~~~~---~g~~~~A~~~~~~~~-----------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  194 (425)
                      ...++.+|..++.   .|++++|+..|++++                 |..+.++..+|.++...|++++|+..+++++.
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  265 (514)
T 2gw1_A          186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE  265 (514)
T ss_dssp             HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            3344555555554   666666666666653                 22345666666666666666666666666666


Q ss_pred             cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy1863         195 ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQI  274 (425)
Q Consensus       195 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  274 (425)
                      .+|. ..++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++...|.++.++..+
T Consensus       266 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  344 (514)
T 2gw1_A          266 LFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL  344 (514)
T ss_dssp             HCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHH
T ss_pred             hCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHH
Confidence            6666 666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchh------hHhhchHHHH
Q psy1863         275 ASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIE------DNFSNGYNWC  341 (425)
Q Consensus       275 a~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~------~~~~~~~~~~  341 (425)
                      |.++...|++++|+..+++ +++..|+++  +..+|.+     ++++|...++++++..|....      .+...|..+.
T Consensus       345 ~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~  423 (514)
T 2gw1_A          345 ACLAYRENKFDDCETLFSE-AKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLT  423 (514)
T ss_dssp             HHHTTTTTCHHHHHHHHHH-HHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHH-HHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHh
Confidence            6666666666666666666 666666655  5555554     666666666666666665533      3333333332


Q ss_pred             H---HHhHHhhc---------hhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHH
Q psy1863         342 V---QSIRNSAH---------SSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYF  397 (425)
Q Consensus       342 ~---~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~  397 (425)
                      .   .+....+.         .+....++..+|.+|...|++++|+..|+++.+..|..+.....+.+
T Consensus       424 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  491 (514)
T 2gw1_A          424 RNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF  491 (514)
T ss_dssp             TSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred             hhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            2   22211111         12233455566666666666666666666666655555544444333

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.96  E-value=1.4e-26  Score=212.76  Aligned_cols=225  Identities=16%  Similarity=0.144  Sum_probs=188.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q psy1863         140 NKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQG-EVEQAEKMAEEACTADTYNSAAFVNLGNCAMARED  215 (425)
Q Consensus       140 ~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  215 (425)
                      .++.++...|++++|+..+++++   |.++.++..+|.++...| ++++|+.+|++++..+|.++.++..+|.++...|+
T Consensus        61 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~  140 (330)
T 3hym_B           61 VHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE  140 (330)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccC
Confidence            44667778888888888888888   778888888888888888 88889999998888888888888888888888899


Q ss_pred             HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863         216 YVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLL  295 (425)
Q Consensus       216 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a  295 (425)
                      +++|+.+|++++...|++..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.++++ +
T Consensus       141 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-a  219 (330)
T 3hym_B          141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLD-A  219 (330)
T ss_dssp             HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-H
T ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHH-H
Confidence            999999999988888888888888888888889999999999988888888888888888888888999999888888 8


Q ss_pred             HhcC---------cchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHH
Q psy1863         296 LEAV---------RNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEI  359 (425)
Q Consensus       296 ~~~~---------p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (425)
                      ++..         |..+  +..+|.+     ++++|+.+++++++..|.+.                         .++.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-------------------------~~~~  274 (330)
T 3hym_B          220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNA-------------------------STYS  274 (330)
T ss_dssp             HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCS-------------------------HHHH
T ss_pred             HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccch-------------------------HHHH
Confidence            8775         3333  6667766     88888888888888877643                         3556


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhccCCcc
Q psy1863         360 NKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT  390 (425)
Q Consensus       360 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~  390 (425)
                      .+|.++...|++++|+..++++.+..|..+.
T Consensus       275 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  305 (330)
T 3hym_B          275 AIGYIHSLMGNFENAVDYFHTALGLRRDDTF  305 (330)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTTTTCSCCHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHccCCCchH
Confidence            6788999999999999999998766655543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.96  E-value=5.9e-27  Score=230.39  Aligned_cols=249  Identities=15%  Similarity=0.135  Sum_probs=213.0

Q ss_pred             cCCHHHHHHHHHhcc---cch-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHH
Q psy1863         148 MNDVSQAVDVLKSCD---EMT-------SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYV  217 (425)
Q Consensus       148 ~g~~~~A~~~~~~~~---~~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  217 (425)
                      .|++++|+..|++++   |.+       +.++..+|.++...|++++|+..|++++..+|. +.++..+|.++...|+++
T Consensus       215 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~  293 (537)
T 3fp2_A          215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQ  293 (537)
T ss_dssp             HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCH
T ss_pred             HHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHH
Confidence            358899999999988   554       446888999999999999999999999999999 999999999999999999


Q ss_pred             HHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy1863         218 KGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLE  297 (425)
Q Consensus       218 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~  297 (425)
                      +|+.+|++++..+|+++.++..+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+.++++ +++
T Consensus       294 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-~~~  372 (537)
T 3fp2_A          294 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNE-TKL  372 (537)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             cCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhch------HHHHHH----------HhHHh------
Q psy1863         298 AVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNG------YNWCVQ----------SIRNS------  348 (425)
Q Consensus       298 ~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~~~----------~~~~~------  348 (425)
                      ..|+++  +..+|.+     ++++|...++++++..|.....+...+      ..+...          +....      
T Consensus       373 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~  452 (537)
T 3fp2_A          373 KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLT  452 (537)
T ss_dssp             HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHH
Confidence            999988  7777777     999999999999999887665444332      112221          22222      


Q ss_pred             ---hchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHH
Q psy1863         349 ---AHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFL  398 (425)
Q Consensus       349 ---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l  398 (425)
                         ...+....++..+|.+|...|++++|++.|+++.+..|..+.......+.
T Consensus       453 ~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  505 (537)
T 3fp2_A          453 KACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFA  505 (537)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHhHH
Confidence               22333457788999999999999999999999999888877776666554

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.96  E-value=6.2e-26  Score=226.20  Aligned_cols=356  Identities=10%  Similarity=0.034  Sum_probs=242.9

Q ss_pred             HHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhc--chhhcccchhHHHHHHH
Q psy1863          14 EIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKK--NARAVRNDALSQLHREM   91 (425)
Q Consensus        14 ~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~d~l~~~~~~~   91 (425)
                      .+......+..+...|++++|++.++++++..        |........++..+...+...  ..+.+.   +.......
T Consensus       199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~~~~~~~~~l~---~~~~~~~~  267 (597)
T 2xpi_A          199 EASMCYLRGQVYTNLSNFDRAKECYKEALMVD--------AKCYEAFDQLVSNHLLTADEEWDLVLKLN---YSTYSKED  267 (597)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHTTCSCHHHHHHHHHHSC---THHHHGGG
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------chhhHHHHHHHHhhcccchhHHHHHHhcC---Ccccccch
Confidence            35667888889999999999999999998765        333222222222222111100  000000   00000000


Q ss_pred             HHHHHHHHHHhhhhhhh-chhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHH
Q psy1863          92 KHEAEKCILTSAKLIAP-SIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSS  167 (425)
Q Consensus        92 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~  167 (425)
                      . .....+  ...++.. .-.+++..+...+...+..    +.....+..+|..+...|++++|+.+|++++   |.+..
T Consensus       268 ~-~~~~~~--~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  340 (597)
T 2xpi_A          268 A-AFLRSL--YMLKLNKTSHEDELRRAEDYLSSINGL----EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLD  340 (597)
T ss_dssp             H-HHHHHH--HHTTSCTTTTHHHHHHHHHHHHTSTTG----GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCT
T ss_pred             H-HHHHHH--HHHHHHHHcCcchHHHHHHHHHHhhcC----CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHH
Confidence            0 000000  0000000 0112233333222222221    2345667889999999999999999999988   77888


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHc
Q psy1863         168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHL  247 (425)
Q Consensus       168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  247 (425)
                      ++..++.++...|++++|+..+++++...|++..++..+|.+|...|++++|+.+|+++++.+|.+..+|..+|.+|...
T Consensus       341 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  420 (597)
T 2xpi_A          341 VYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIE  420 (597)
T ss_dssp             THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHH
Q psy1863         248 NEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCIL  320 (425)
Q Consensus       248 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~  320 (425)
                      |++++|+..|++++...|++..++..+|.+|...|++++|+.+|++ +++..|.++  +..++.+     ++++|+..|+
T Consensus       421 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  499 (597)
T 2xpi_A          421 GEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQS-SYALFQYDPLLLNELGVVAFNKSDMQTAINHFQ  499 (597)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999 999999888  7777776     8999999999


Q ss_pred             HHHhhc------CCc-hhhHhhchHHHHHHHhHHhh---------chhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy1863         321 TSAKLI------APS-IEDNFSNGYNWCVQSIRNSA---------HSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEM  384 (425)
Q Consensus       321 ~a~~~~------~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  384 (425)
                      ++++..      |.. ...+..+|..+...+....+         ..+....++..++.+|...|++++|++.++++.+.
T Consensus       500 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  579 (597)
T 2xpi_A          500 NALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI  579 (597)
T ss_dssp             HHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            998884      332 22333333222211111111         11223345555666666666666666666666555


Q ss_pred             ccCC
Q psy1863         385 TSSA  388 (425)
Q Consensus       385 ~~~~  388 (425)
                      .|.+
T Consensus       580 ~p~~  583 (597)
T 2xpi_A          580 SPNE  583 (597)
T ss_dssp             CTTC
T ss_pred             CCCC
Confidence            4433

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.96  E-value=1.9e-26  Score=223.23  Aligned_cols=349  Identities=12%  Similarity=0.003  Sum_probs=217.8

Q ss_pred             HHhhHHhccccHHHHHHHHHHhhHHHHHHHHHH-HhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHHHHHHH
Q psy1863          20 DESCICARNQDFKAALEKAKLASNKERVLIKLQ-EQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEAEKC   98 (425)
Q Consensus        20 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~   98 (425)
                      ..|.+++.+|++++|++.+++|+++.+...... ++.......|++.+|...|++.                   ++..+
T Consensus        56 ~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~-------------------~A~~~  116 (472)
T 4g1t_A           56 LLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLS-------------------DVQIY  116 (472)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHH-------------------HHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChH-------------------HHHHH
Confidence            468889999999999999999998764221100 0111112334555555555544                   12222


Q ss_pred             HHHhhhhhh----------------------hchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHH---HHcCCHHH
Q psy1863          99 ILTSAKLIA----------------------PSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTF---LRMNDVSQ  153 (425)
Q Consensus        99 ~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---~~~g~~~~  153 (425)
                      +..+..+..                      ..-..++..+...+.+.+...+.   ..+.+..+|.++   ...++.++
T Consensus       117 ~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~---~~~~~~~~~~~~~~l~~~~~~~~  193 (472)
T 4g1t_A          117 VDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK---NPEFTSGLAIASYRLDNWPPSQN  193 (472)
T ss_dssp             HHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHHHSCCCCC
T ss_pred             HHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCchHHHH
Confidence            211111100                      00011233343344444443322   233444555543   34567777


Q ss_pred             HHHHHHhcc---cchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy1863         154 AVDVLKSCD---EMTSSAATNLSFIYFL----QGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHA  226 (425)
Q Consensus       154 A~~~~~~~~---~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  226 (425)
                      |+..|++++   |..+.++..+|..+..    .|++++|+.++++++..+|.++.++.++|.++...|++++|+..|+++
T Consensus       194 al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  273 (472)
T 4g1t_A          194 AIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKA  273 (472)
T ss_dssp             THHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence            888888877   7777777777766554    456778888888888888888888888888888888888888888888


Q ss_pred             HhcCcCcHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy1863         227 LDNDATCIEALYNLGLAHKHL-------------------NEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA  287 (425)
Q Consensus       227 l~~~~~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  287 (425)
                      ++.+|+++.++.++|.+|...                   +.+++|+..+++++..+|.+..++..+|.++...|++++|
T Consensus       274 l~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A  353 (472)
T 4g1t_A          274 LEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEA  353 (472)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHH
T ss_pred             HHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHH
Confidence            888888888888888887543                   3467888888888888888888888899999999999999


Q ss_pred             HHHHHHHHHhcCcchH-----HHHHHHh------hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHH-hHHhhchhhhc
Q psy1863         288 SDVNENLLLEAVRNDA-----LSQLHRE------MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQS-IRNSAHSSLAQ  355 (425)
Q Consensus       288 ~~~~~~~a~~~~p~~~-----~~~l~~~------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  355 (425)
                      +.+|++ ++...|++.     +..++.+      ++++|+.+|.+++++.|..........  .+... .......|...
T Consensus       354 ~~~~~k-aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~--~l~~~~~~~l~~~p~~~  430 (472)
T 4g1t_A          354 EYYFQK-EFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKD--KLQKIAKMRLSKNGADS  430 (472)
T ss_dssp             HHHHHH-HHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHH--HHHHHHHHHHHHCC-CT
T ss_pred             HHHHHH-HHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHH--HHHHHHHHHHHhCCCCH
Confidence            999999 998887665     3444443      788999999999999888765332221  11111 11123345567


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchh
Q psy1863         356 DLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLS  393 (425)
Q Consensus       356 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~  393 (425)
                      .++..+|.+|...|++++|++.|+++....+..|...+
T Consensus       431 ~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~  468 (472)
T 4g1t_A          431 EALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS  468 (472)
T ss_dssp             THHHHHHHHHHHHHHCC---------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence            88999999999999999999999999887777665443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.95  E-value=2.4e-25  Score=221.89  Aligned_cols=274  Identities=13%  Similarity=0.049  Sum_probs=228.0

Q ss_pred             HcCCHHHHHHHHHhcc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q psy1863         147 RMNDVSQAVDVLKSCD--EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYV  224 (425)
Q Consensus       147 ~~g~~~~A~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  224 (425)
                      ..|++++|+..|++++  +.++.++..+|.++...|++++|+..|++++..+|.+..++..++.++...|++++|+..++
T Consensus       284 ~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  363 (597)
T 2xpi_A          284 HEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISN  363 (597)
T ss_dssp             THHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            3445555555555554  46678888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH-
Q psy1863         225 HALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA-  303 (425)
Q Consensus       225 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~-  303 (425)
                      +++...|+++.++..+|.+|...|++++|+..|+++++..|.+..++..+|.++...|++++|+..|++ +++..|++. 
T Consensus       364 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~  442 (597)
T 2xpi_A          364 DLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTT-AARLFQGTHL  442 (597)
T ss_dssp             HHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHTTTTCSH
T ss_pred             HHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCccchH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999 999999877 


Q ss_pred             -HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhc---------------hhhh-cHHHHHH
Q psy1863         304 -LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAH---------------SSLA-QDLEINK  361 (425)
Q Consensus       304 -~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~-~~~~~~l  361 (425)
                       +..++.+     ++++|...|+++++..|.+...+..+|..+...+....+.               .+.. ..++..+
T Consensus       443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l  522 (597)
T 2xpi_A          443 PYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL  522 (597)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence             7777766     9999999999999999998887777765444332222111               1221 4678889


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcCCCCcHHHHHHhHhHHhhc
Q psy1863         362 AVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLTVLQY  424 (425)
Q Consensus       362 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~~  424 (425)
                      +.+|...|++++|+..++++.+..|..   ......+..........++|..++++++++-|.
T Consensus       523 ~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~  582 (597)
T 2xpi_A          523 GHAYRKLKMYDAAIDALNQGLLLSTND---ANVHTAIALVYLHKKIPGLAITHLHESLAISPN  582 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence            999999999999999999997776544   344444444444455788999999999987654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.95  E-value=6.9e-26  Score=217.80  Aligned_cols=288  Identities=10%  Similarity=0.009  Sum_probs=233.8

Q ss_pred             chhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy1863         132 SLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGN  208 (425)
Q Consensus       132 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  208 (425)
                      +.....++.+|..+...|++++|+..|++++   |.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.
T Consensus        23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  102 (450)
T 2y4t_A           23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH  102 (450)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            3456677888999999999999999999988   7889999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCcCcH---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy1863         209 CAMAREDYVKGKELYVHALDNDATCI---EALYNL------------GLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQ  273 (425)
Q Consensus       209 ~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  273 (425)
                      ++...|++++|+.+|++++..+|++.   .++..+            |.++...|++++|+..|++++...|.++.++..
T Consensus       103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  182 (450)
T 2y4t_A          103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL  182 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            99999999999999999999999887   766555            666899999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhc----------
Q psy1863         274 IASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSN----------  336 (425)
Q Consensus       274 la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~----------  336 (425)
                      +|.++...|++++|+..|++ +++.+|+++  +..++.+     ++++|+..+++++...|.....+...          
T Consensus       183 l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  261 (450)
T 2y4t_A          183 RAECFIKEGEPRKAISDLKA-ASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI  261 (450)
T ss_dssp             HHHHHHHTTCGGGGHHHHHH-HHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999 999998888  7777777     89999999999999999887655433          


Q ss_pred             --hHHHHHHHhHHhhch---------hhh----cHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhh
Q psy1863         337 --GYNWCVQSIRNSAHS---------SLA----QDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSS  401 (425)
Q Consensus       337 --~~~~~~~~~~~~~~~---------~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~  401 (425)
                        |..+...+....+..         +..    ...+..+|.++...|++++|+..++++.+..|..+   ...+.+...
T Consensus       262 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~  338 (450)
T 2y4t_A          262 ESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNV---NALKDRAEA  338 (450)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH---HHHHHHHHH
Confidence              222222211111111         111    34677899999999999999999999977765443   444444344


Q ss_pred             ccCcCCCCcHHHHHHhHhHHhh
Q psy1863         402 EFQYLPTSEVPIYLENLLTVLQ  423 (425)
Q Consensus       402 ~~~~~~~~ea~~~~~~~l~~~~  423 (425)
                      ........+|..++++++++.|
T Consensus       339 ~~~~~~~~~A~~~~~~al~~~p  360 (450)
T 2y4t_A          339 YLIEEMYDEAIQDYETAQEHNE  360 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTSS
T ss_pred             HHHhcCHHHHHHHHHHHHHhCc
Confidence            4445578899999999987654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.95  E-value=7.5e-26  Score=222.48  Aligned_cols=217  Identities=14%  Similarity=0.085  Sum_probs=194.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM  211 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  211 (425)
                      ...+..+|..+...|++++|+..|++++   |. +.++..+|.++...|++++|+..+++++..+|+++.++..+|.++.
T Consensus       243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  321 (537)
T 3fp2_A          243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF  321 (537)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence            4567889999999999999999999999   66 8999999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy1863         212 AREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVN  291 (425)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  291 (425)
                      ..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..|
T Consensus       322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  401 (537)
T 3fp2_A          322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQY  401 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcchH--------HHHHHH---------------hhHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHh
Q psy1863         292 ENLLLEAVRNDA--------LSQLHR---------------EMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNS  348 (425)
Q Consensus       292 ~~~a~~~~p~~~--------~~~l~~---------------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (425)
                      ++ +++..|+++        +..++.               -++++|+.+++++++..|.+...+..+|..+...+....
T Consensus       402 ~~-a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~  480 (537)
T 3fp2_A          402 DI-AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE  480 (537)
T ss_dssp             HH-HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HH-HHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence            99 999988765        122222               257899999999999999999888887765555444444


Q ss_pred             hchhh
Q psy1863         349 AHSSL  353 (425)
Q Consensus       349 ~~~~~  353 (425)
                      +...+
T Consensus       481 A~~~~  485 (537)
T 3fp2_A          481 AIELF  485 (537)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44333

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.95  E-value=1.3e-26  Score=216.81  Aligned_cols=228  Identities=11%  Similarity=0.072  Sum_probs=204.0

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM  211 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  211 (425)
                      ...++.+|..+...|++++|+..|++++   |..+.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++.
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT  144 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            4446889999999999999999999999   8999999999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCcCcHHHHHHH----------HHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHH
Q psy1863         212 AREDYVKGKELYVHALDNDATCIEALYNL----------GLAHKHLNEYSDSLECFHKLQAIVPS--MPEVLYQIASLYE  279 (425)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l----------a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~  279 (425)
                      ..|++++|+.+|++++..+|++..++..+          |.++...|++++|+.+|++++...|.  ++.++..+|.++.
T Consensus       145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~  224 (365)
T 4eqf_A          145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH  224 (365)
T ss_dssp             HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence            99999999999999999999876666554          99999999999999999999999999  8999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchh
Q psy1863         280 ITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSS  352 (425)
Q Consensus       280 ~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (425)
                      ..|++++|+.+|++ +++..|+++  +..+|.+     ++++|+..|+++++..|...                      
T Consensus       225 ~~g~~~~A~~~~~~-al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----------------------  281 (365)
T 4eqf_A          225 LSGEFNRAIDAFNA-ALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFI----------------------  281 (365)
T ss_dssp             HHTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------------------
T ss_pred             HCCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch----------------------
Confidence            99999999999999 999999988  8888887     99999999999999988763                      


Q ss_pred             hhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCC
Q psy1863         353 LAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSA  388 (425)
Q Consensus       353 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  388 (425)
                         .++..+|.+|...|++++|+..|+++.+..|..
T Consensus       282 ---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  314 (365)
T 4eqf_A          282 ---RSRYNLGISCINLGAYREAVSNFLTALSLQRKS  314 (365)
T ss_dssp             ---HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred             ---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence               345667889999999999999999998777653

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=3e-26  Score=223.90  Aligned_cols=390  Identities=12%  Similarity=0.078  Sum_probs=269.4

Q ss_pred             HHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHH
Q psy1863          13 QEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMK   92 (425)
Q Consensus        13 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~   92 (425)
                      +.+..+...|..+...|+|++|+..+++++...        | +.....+++..+...|++..........+...     
T Consensus         4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----   69 (514)
T 2gw1_A            4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELK--------E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELK-----   69 (514)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----
T ss_pred             hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--------c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-----
Confidence            457889999999999999999999999998876        4 34456677888888887662111111111100     


Q ss_pred             HHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHH-----------------
Q psy1863          93 HEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAV-----------------  155 (425)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~-----------------  155 (425)
                      +.........+...  ...+++..+...+...+...+.........+.........+...+++                 
T Consensus        70 p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  147 (514)
T 2gw1_A           70 PDYSKVLLRRASAN--EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQP  147 (514)
T ss_dssp             SCCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC------------------
T ss_pred             hHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCh
Confidence            00000000011110  11123333443344433333222211111111111111111111111                 


Q ss_pred             ------------------HHHHhcc----------cchHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh-----c--C-
Q psy1863         156 ------------------DVLKSCD----------EMTSSAATNLSFIYFL---QGEVEQAEKMAEEACT-----A--D-  196 (425)
Q Consensus       156 ------------------~~~~~~~----------~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~-----~--~-  196 (425)
                                        ..+....          |.++.++..+|.+++.   .|++++|+..|++++.     .  + 
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  227 (514)
T 2gw1_A          148 AKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNN  227 (514)
T ss_dssp             ---------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTST
T ss_pred             hhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCc
Confidence                              0111100          3458888999998887   8999999999999998     5  4 


Q ss_pred             ------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy1863         197 ------TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEV  270 (425)
Q Consensus       197 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  270 (425)
                            |.++.++..+|.++...|++++|+.+|++++..+|. +.++..+|.++...|++++|+..+++++...|.++.+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  306 (514)
T 2gw1_A          228 EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSV  306 (514)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHH
T ss_pred             cccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHH
Confidence                  444678999999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHH
Q psy1863         271 LYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQ  343 (425)
Q Consensus       271 ~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  343 (425)
                      +..+|.++...|++++|+..+++ +++..|+++  +..++.+     ++++|+..++++++..|.+...+...|..+...
T Consensus       307 ~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  385 (514)
T 2gw1_A          307 YYHRGQMNFILQNYDQAGKDFDK-AKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDK  385 (514)
T ss_dssp             HHHHHHHHHHTTCTTHHHHHHHH-HHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHH-HHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHC
Confidence            99999999999999999999999 999999887  7777777     899999999999999999888777776544433


Q ss_pred             HhHHhhch---------hhh------cHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCc
Q psy1863         344 SIRNSAHS---------SLA------QDLEINKAVTFLR---MNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQY  405 (425)
Q Consensus       344 ~~~~~~~~---------~~~------~~~~~~la~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~  405 (425)
                      +....+..         +..      ...+..+|.++..   .|++++|+..++++....|..+   ...+.+.......
T Consensus       386 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~  462 (514)
T 2gw1_A          386 NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSE---QAKIGLAQMKLQQ  462 (514)
T ss_dssp             TCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHh
Confidence            32222211         112      2388899999999   9999999999999987765544   3333333334444


Q ss_pred             CCCCcHHHHHHhHhHHhh
Q psy1863         406 LPTSEVPIYLENLLTVLQ  423 (425)
Q Consensus       406 ~~~~ea~~~~~~~l~~~~  423 (425)
                      ....+|..++++++++.+
T Consensus       463 g~~~~A~~~~~~a~~~~~  480 (514)
T 2gw1_A          463 EDIDEAITLFEESADLAR  480 (514)
T ss_dssp             TCHHHHHHHHHHHHHHCS
T ss_pred             cCHHHHHHHHHHHHHhcc
Confidence            578899999999988755

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.95  E-value=8.6e-26  Score=207.56  Aligned_cols=269  Identities=11%  Similarity=0.033  Sum_probs=235.4

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM  211 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  211 (425)
                      .++.+.+|..++..|++++|+.+|++++   |.++.++..++.++...|++++|+..++++++.+|.++.++..+|.++.
T Consensus        22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  101 (330)
T 3hym_B           22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYL  101 (330)
T ss_dssp             CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            3455788999999999999999999998   8888899999999999999999999999999999999999999999999


Q ss_pred             Hhc-CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy1863         212 ARE-DYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDV  290 (425)
Q Consensus       212 ~~g-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  290 (425)
                      ..| ++++|+.+|++++..+|+++.++..+|.++...|++++|+..|++++...|++..++..+|.++...|++++|+.+
T Consensus       102 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  181 (330)
T 3hym_B          102 MVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERF  181 (330)
T ss_dssp             HSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHH
Confidence            999 9999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHH
Q psy1863         291 NENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAV  363 (425)
Q Consensus       291 ~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~  363 (425)
                      +++ +++..|+++  +..++.+     ++++|..+++++++..|.......                .+....++..+|.
T Consensus       182 ~~~-al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~----------------~~~~~~~~~~la~  244 (330)
T 3hym_B          182 FSQ-ALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT----------------VDKWEPLLNNLGH  244 (330)
T ss_dssp             HHH-HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT----------------TTTCCHHHHHHHH
T ss_pred             HHH-HHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc----------------ccHHHHHHHHHHH
Confidence            999 999999998  7777777     999999999999998765332111                1122467888999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcCCCCcHHHHHHhHhHHhh
Q psy1863         364 TFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLTVLQ  423 (425)
Q Consensus       364 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~  423 (425)
                      ++...|++++|+..++++.+..|..+.   ....+...........+|..++++++++.+
T Consensus       245 ~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p  301 (330)
T 3hym_B          245 VCRKLKKYAEALDYHRQALVLIPQNAS---TYSAIGYIHSLMGNFENAVDYFHTALGLRR  301 (330)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCSH---HHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred             HHHHhcCHHHHHHHHHHHHhhCccchH---HHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence            999999999999999999887765443   333333333334477899999999887654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.95  E-value=5.5e-26  Score=212.58  Aligned_cols=233  Identities=14%  Similarity=0.085  Sum_probs=196.4

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH-----
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNL-----  206 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-----  206 (425)
                      ...+..+|.++...|++++|+..|++++   |..+.++..+|.+|...|++++|+..|+++++.+|.+..++..+     
T Consensus        99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  178 (365)
T 4eqf_A           99 AEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPG  178 (365)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC---------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchH
Confidence            3445788999999999999999999998   88899999999999999999999999999999998876665544     


Q ss_pred             -----HHHHHHhcCHHHHHHHHHHHHhcCcC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy1863         207 -----GNCAMAREDYVKGKELYVHALDNDAT--CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE  279 (425)
Q Consensus       207 -----a~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  279 (425)
                           |.++...|++++|+.+|++++..+|+  ++.++.++|.++...|++++|+.+|+++++..|+++.++..+|.++.
T Consensus       179 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  258 (365)
T 4eqf_A          179 LTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLA  258 (365)
T ss_dssp             ----------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence                 99999999999999999999999999  89999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchh
Q psy1863         280 ITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSS  352 (425)
Q Consensus       280 ~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (425)
                      ..|++++|+.+|++ +++.+|+++  +..+|.+     ++++|..+|++++++.|.........             ...
T Consensus       259 ~~g~~~~A~~~~~~-al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-------------~~~  324 (365)
T 4eqf_A          259 NGDRSEEAVEAYTR-ALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVP-------------HPA  324 (365)
T ss_dssp             HTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-----------------------
T ss_pred             HcCCHHHHHHHHHH-HHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccc-------------hhh
Confidence            99999999999999 999999988  7888877     89999999999999998765422111             111


Q ss_pred             hhcHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy1863         353 LAQDLEINKAVTFLRMNDVSQAVDVLKSC  381 (425)
Q Consensus       353 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~  381 (425)
                      ....+|..++.++..+|+.+.|....++.
T Consensus       325 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  353 (365)
T 4eqf_A          325 ISGNIWAALRIALSLMDQPELFQAANLGD  353 (365)
T ss_dssp             --CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence            23578889999999999999988876653

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.95  E-value=1.3e-25  Score=194.43  Aligned_cols=187  Identities=14%  Similarity=0.120  Sum_probs=168.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM  211 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  211 (425)
                      .+.++.+|..+...|++++|+..|++++   |.++.+++.+|.++...|++++|+..|+++++.+|+++.++.++|.++.
T Consensus         5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~   84 (217)
T 2pl2_A            5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYV   84 (217)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            4556889999999999999999999998   9999999999999999999999999999999999999999999999999


Q ss_pred             Hh-----------cCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy1863         212 AR-----------EDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI  280 (425)
Q Consensus       212 ~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  280 (425)
                      ..           |++++|+..|+++++++|+++.++.++|.++...|++++|+..|+++++++ +++.++.++|.++..
T Consensus        85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~  163 (217)
T 2pl2_A           85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLS  163 (217)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred             HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHH
Confidence            99           999999999999999999999999999999999999999999999999999 999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHH
Q psy1863         281 TGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSA  323 (425)
Q Consensus       281 ~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~  323 (425)
                      .|++++|+..|++ +++.+|+++  +..++.+     ++++|+..++++-
T Consensus       164 ~g~~~~A~~~~~~-al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          164 MGRLDEALAQYAK-ALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HTCHHHHHHHHHH-HHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred             cCCHHHHHHHHHH-HHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            9999999999999 999999998  7778777     8888988887763

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.94  E-value=1.3e-25  Score=194.27  Aligned_cols=192  Identities=14%  Similarity=0.110  Sum_probs=167.7

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL  242 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  242 (425)
                      |.++.+++.+|.++...|++++|+..|+++++.+|+++.+++++|.++...|++++|+..|+++++++|+++.++.++|.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            66788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHc-----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHH
Q psy1863         243 AHKHL-----------NEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHR  309 (425)
Q Consensus       243 ~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~  309 (425)
                      ++...           |++++|+..|+++++++|+++.++..+|.++...|++++|+..|++ +++++ +++  +..+|.
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~-~~~~~~~~la~  159 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ-ALALE-DTPEIRSALAE  159 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHC-CCHHHHHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHH-HHhcc-cchHHHHHHHH
Confidence            99999           9999999999999999999999999999999999999999999999 99999 777  788888


Q ss_pred             h-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy1863         310 E-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSC  381 (425)
Q Consensus       310 ~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  381 (425)
                      +     ++++|+..|+++++..|++..                         ++..+|.++...|++++|+..++++
T Consensus       160 ~~~~~g~~~~A~~~~~~al~~~P~~~~-------------------------~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          160 LYLSMGRLDEALAQYAKALEQAPKDLD-------------------------LRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSTTCHH-------------------------HHHHHHHHHTC--------------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChH-------------------------HHHHHHHHHHHccCHHHHHHHHHHH
Confidence            7     999999999999999998653                         4456689999999999999999886

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.94  E-value=1.2e-25  Score=210.27  Aligned_cols=230  Identities=11%  Similarity=0.012  Sum_probs=202.6

Q ss_pred             hhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy1863         133 LAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGE-VEQAEKMAEEACTADTYNSAAFVNLGN  208 (425)
Q Consensus       133 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~  208 (425)
                      ...+++..+|.++...|++++|+..|++++   |.+..+|+.+|.++..+|+ +++|+..|++++.++|++..+|+++|.
T Consensus        95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~  174 (382)
T 2h6f_A           95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            346677889999999999999999999999   9999999999999999997 999999999999999999999999999


Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHH
Q psy1863         209 CAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI-TGDVEQA  287 (425)
Q Consensus       209 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A  287 (425)
                      ++..+|++++|+.+|++++.++|++..+|+++|.++..+|++++|+.+|+++++++|++..+|+++|.++.. .|..++|
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA  254 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA  254 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999 5655777


Q ss_pred             -----HHHHHHHHHhcCcchH--HHHHHHh-------hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhh
Q psy1863         288 -----SDVNENLLLEAVRNDA--LSQLHRE-------MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSL  353 (425)
Q Consensus       288 -----~~~~~~~a~~~~p~~~--~~~l~~~-------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (425)
                           +.+|++ ++.++|++.  |..++.+       ++++|+..+.++ +..|++..                      
T Consensus       255 ~~~~el~~~~~-Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~----------------------  310 (382)
T 2h6f_A          255 VLEREVQYTLE-MIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPY----------------------  310 (382)
T ss_dssp             HHHHHHHHHHH-HHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHH----------------------
T ss_pred             HHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHH----------------------
Confidence                 599999 999999998  8887776       367788777776 65665533                      


Q ss_pred             hcHHHHHHHHHHHhcC--------C-HHHHHHHHHHH-HhhccCCc
Q psy1863         354 AQDLEINKAVTFLRMN--------D-VSQAVDVLKSC-DEMTSSAA  389 (425)
Q Consensus       354 ~~~~~~~la~~~~~~g--------~-~~~A~~~~~~~-~~~~~~~~  389 (425)
                         ++..+|.+|..+|        + +++|+++|+++ .+..|...
T Consensus       311 ---al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~  353 (382)
T 2h6f_A          311 ---LIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRK  353 (382)
T ss_dssp             ---HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred             ---HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhH
Confidence               3445567777764        3 58999999998 66665443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.94  E-value=4.6e-25  Score=206.22  Aligned_cols=262  Identities=15%  Similarity=0.082  Sum_probs=224.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM  211 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  211 (425)
                      ...++.+|..+...|++++|+..|++++   |..+.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++.
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  143 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT  143 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            3445789999999999999999999998   8899999999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCcCcHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHH
Q psy1863         212 AREDYVKGKELYVHALDNDATCIEALY----------------NLGLAHKHLNEYSDSLECFHKLQAIVPS--MPEVLYQ  273 (425)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~~~~~~~~~----------------~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~  273 (425)
                      ..|++++|+..|++++...|.+...+.                .++.++ ..|++++|+..|++++...|.  .+.++..
T Consensus       144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~  222 (368)
T 1fch_A          144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCG  222 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence            999999999999999999998876654                567776 999999999999999999999  8999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhH
Q psy1863         274 IASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIR  346 (425)
Q Consensus       274 la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  346 (425)
                      +|.++...|++++|+.+|++ ++...|+++  +..+|.+     ++++|+..++++++..|...                
T Consensus       223 l~~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----------------  285 (368)
T 1fch_A          223 LGVLFNLSGEYDKAVDCFTA-ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI----------------  285 (368)
T ss_dssp             HHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------------
T ss_pred             HHHHHHHcCCHHHHHHHHHH-HHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----------------
Confidence            99999999999999999999 999999988  7788877     99999999999999988654                


Q ss_pred             HhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCc--------cchhHHHHHhhhccCcCCCCcHHHHHHhH
Q psy1863         347 NSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAA--------TNLSFIYFLVSSEFQYLPTSEVPIYLENL  418 (425)
Q Consensus       347 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~--------~~l~~~~~l~~~~~~~~~~~ea~~~~~~~  418 (425)
                               .++..+|.+|...|++++|+..|+++.+..|...        ........+..........+++..+..+.
T Consensus       286 ---------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  356 (368)
T 1fch_A          286 ---------RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD  356 (368)
T ss_dssp             ---------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred             ---------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence                     3456678899999999999999999987776551        11233333333333334677888888777


Q ss_pred             hHHhh
Q psy1863         419 LTVLQ  423 (425)
Q Consensus       419 l~~~~  423 (425)
                      ++.+.
T Consensus       357 l~~~~  361 (368)
T 1fch_A          357 LSTLL  361 (368)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.94  E-value=1.2e-25  Score=210.26  Aligned_cols=232  Identities=14%  Similarity=0.100  Sum_probs=207.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH-------
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFV-------  204 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-------  204 (425)
                      ...+..+|.++...|++++|+..|++++   |..+.++..+|.++...|++++|+..+++++...|.+...+.       
T Consensus        98 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (368)
T 1fch_A           98 MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG  177 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-------
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhh
Confidence            4566889999999999999999999998   889999999999999999999999999999999999877664       


Q ss_pred             ---------HHHHHHHHhcCHHHHHHHHHHHHhcCcC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy1863         205 ---------NLGNCAMAREDYVKGKELYVHALDNDAT--CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQ  273 (425)
Q Consensus       205 ---------~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  273 (425)
                               .++.++ ..|++++|+.+|++++..+|+  ++.++..+|.++...|++++|+..|++++...|+++.++..
T Consensus       178 ~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  256 (368)
T 1fch_A          178 GAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNK  256 (368)
T ss_dssp             --------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHH
Confidence                     566666 999999999999999999999  89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhH
Q psy1863         274 IASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIR  346 (425)
Q Consensus       274 la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  346 (425)
                      +|.++...|++++|+.+|++ +++..|+++  +..+|.+     ++++|..+++++++..|........           
T Consensus       257 l~~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----------  324 (368)
T 1fch_A          257 LGATLANGNQSEEAVAAYRR-ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE-----------  324 (368)
T ss_dssp             HHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----------------
T ss_pred             HHHHHHHcCCHHHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccc-----------
Confidence            99999999999999999999 999999988  7788877     9999999999999998876332111           


Q ss_pred             HhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy1863         347 NSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD  382 (425)
Q Consensus       347 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  382 (425)
                         ..+....++..+|.++..+|++++|..++++..
T Consensus       325 ---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  357 (368)
T 1fch_A          325 ---GGAMSENIWSTLRLALSMLGQSDAYGAADARDL  357 (368)
T ss_dssp             ---CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred             ---ccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence               122335678889999999999999999887653

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.94  E-value=4.5e-25  Score=197.35  Aligned_cols=241  Identities=16%  Similarity=0.146  Sum_probs=207.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHH
Q psy1863         136 DLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN----SAAFVNLGN  208 (425)
Q Consensus       136 ~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~  208 (425)
                      +..+..|..++..|++++|+..|++++   |.++.++..+|.++...|++++|+..++++++ .|.+    ..++..+|.
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~   82 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK   82 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence            445788999999999999999999998   88888999999999999999999999999999 4433    455999999


Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy1863         209 CAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQAS  288 (425)
Q Consensus       209 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  288 (425)
                      ++...|++++|+.+|+++++.+|.++.++..+|.++...|++++|+.+|++++..+|.++.+++.+|......+++++|+
T Consensus        83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~  162 (272)
T 3u4t_A           83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD  162 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999995555567999999


Q ss_pred             HHHHHHHHhcCcchH--HHHHHHh-----h---HHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHH
Q psy1863         289 DVNENLLLEAVRNDA--LSQLHRE-----M---KHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLE  358 (425)
Q Consensus       289 ~~~~~~a~~~~p~~~--~~~l~~~-----~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (425)
                      ..|++ +++.+|+++  +..++.+     +   +++|+..++++++.........                 ......++
T Consensus       163 ~~~~~-a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-----------------~~~~~~~~  224 (272)
T 3u4t_A          163 SSFVK-VLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-----------------KDELIEAN  224 (272)
T ss_dssp             HHHHH-HHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-----------------HHHHHHHH
T ss_pred             HHHHH-HHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-----------------hHHHHHHH
Confidence            99999 999999988  6667766     3   6678999999988764332211                 01113567


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHH
Q psy1863         359 INKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFI  395 (425)
Q Consensus       359 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~  395 (425)
                      ..+|.+|...|++++|++.++++.+..|.++.-...+
T Consensus       225 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l  261 (272)
T 3u4t_A          225 EYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGL  261 (272)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHh
Confidence            7899999999999999999999988887766544443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.94  E-value=7e-25  Score=201.18  Aligned_cols=264  Identities=13%  Similarity=0.070  Sum_probs=218.4

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy1863         134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCA  210 (425)
Q Consensus       134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (425)
                      ..+.++.+|..+...|++++|+.+|++++   |..+.++..+|.++...|++++|+..++++++.+|.++.++..+|.++
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   99 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH   99 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence            34456888999999999999999999998   888999999999999999999999999999999999999999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCcCcHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy1863         211 MAREDYVKGKELYVHALDNDATCIEALYNL--------------GL-AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIA  275 (425)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  275 (425)
                      ...|++++|+..+++++..+|.+...+..+              +. ++...|++++|+..+++++...|.++.++..+|
T Consensus       100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la  179 (327)
T 3cv0_A          100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG  179 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            999999999999999999999888777776              66 688899999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHh
Q psy1863         276 SLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNS  348 (425)
Q Consensus       276 ~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (425)
                      .++...|++++|+.++++ +++..|+++  +..++.+     ++++|+..++++++..|.+..                 
T Consensus       180 ~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----------------  241 (327)
T 3cv0_A          180 VLYNLSNNYDSAAANLRR-AVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVR-----------------  241 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------
T ss_pred             HHHHHhccHHHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-----------------
Confidence            999999999999999999 999999988  7777777     899999999999999887543                 


Q ss_pred             hchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcc---------chhHHHHHhhhccCcCCCCcHHHHHHhHh
Q psy1863         349 AHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT---------NLSFIYFLVSSEFQYLPTSEVPIYLENLL  419 (425)
Q Consensus       349 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~l~~~~~l~~~~~~~~~~~ea~~~~~~~l  419 (425)
                              .+..+|.++...|++++|+..++++.+..|....         .......+..........++|..++++.+
T Consensus       242 --------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  313 (327)
T 3cv0_A          242 --------VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV  313 (327)
T ss_dssp             --------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred             --------HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence                    3455678888888888888888888776655211         22333333333333346667777777776


Q ss_pred             HHhh
Q psy1863         420 TVLQ  423 (425)
Q Consensus       420 ~~~~  423 (425)
                      +..+
T Consensus       314 ~~~~  317 (327)
T 3cv0_A          314 EPFA  317 (327)
T ss_dssp             HHHH
T ss_pred             Hhcc
Confidence            6554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.94  E-value=1e-24  Score=200.09  Aligned_cols=232  Identities=10%  Similarity=-0.001  Sum_probs=200.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH---------
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNL---------  206 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---------  206 (425)
                      ..+|.++...|++++|+..+++++   |..+.++..+|.++...|++++|+..+++++..+|.+...+..+         
T Consensus        59 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (327)
T 3cv0_A           59 RSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDD  138 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-------------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHH
Confidence            567889999999999999999998   88899999999999999999999999999999999988877776         


Q ss_pred             -----HH-HHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy1863         207 -----GN-CAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI  280 (425)
Q Consensus       207 -----a~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  280 (425)
                           +. ++...|++++|+.++++++...|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++..
T Consensus       139 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  218 (327)
T 3cv0_A          139 LNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN  218 (327)
T ss_dssp             -------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence                 66 688999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhh
Q psy1863         281 TGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSL  353 (425)
Q Consensus       281 ~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (425)
                      .|++++|+.++++ +++..|+++  +..++.+     ++++|...++++++..|.........             ....
T Consensus       219 ~~~~~~A~~~~~~-a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-------------~~~~  284 (327)
T 3cv0_A          219 GNRPQEALDAYNR-ALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEA-------------SREA  284 (327)
T ss_dssp             TTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC------------------CCTH
T ss_pred             cCCHHHHHHHHHH-HHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccc-------------hhhc
Confidence            9999999999999 999999988  7777777     89999999999999988743221100             0111


Q ss_pred             hcHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy1863         354 AQDLEINKAVTFLRMNDVSQAVDVLKSCDEM  384 (425)
Q Consensus       354 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  384 (425)
                      ...++..++.++..+|++++|...++++...
T Consensus       285 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  315 (327)
T 3cv0_A          285 TRSMWDFFRMLLNVMNRPDLVELTYAQNVEP  315 (327)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            2456778999999999999999998876443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.93  E-value=2e-24  Score=181.58  Aligned_cols=169  Identities=18%  Similarity=0.204  Sum_probs=163.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM  211 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  211 (425)
                      +.+++.+|.++...|++++|+..|++++   |.++.++..+|.+|...|++++|+..+.+++...|.++.++..+|.++.
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF   84 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            5677999999999999999999999999   9999999999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy1863         212 AREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVN  291 (425)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  291 (425)
                      ..++++.|...+.+++..+|+++.++..+|.++..+|++++|+..|+++++.+|.++.+++++|.+|..+|++++|+.+|
T Consensus        85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~  164 (184)
T 3vtx_A           85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF  164 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcchHH
Q psy1863         292 ENLLLEAVRNDAL  304 (425)
Q Consensus       292 ~~~a~~~~p~~~~  304 (425)
                      ++ +++++|+++.
T Consensus       165 ~~-al~~~p~~a~  176 (184)
T 3vtx_A          165 KK-ALEKEEKKAK  176 (184)
T ss_dssp             HH-HHHTTHHHHH
T ss_pred             HH-HHhCCccCHH
Confidence            99 9999998773

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.93  E-value=4.5e-24  Score=206.55  Aligned_cols=288  Identities=12%  Similarity=0.007  Sum_probs=211.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc-----------cchHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCHH
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD-----------EMTSSAATNLSFIYFLQ--GEVEQAEKMAEEACTADTYNSA  201 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~  201 (425)
                      ...+.++|.+|..+|++++|+.++++++           +..+.++..+|.++...  +++++|+.+|+++++++|+++.
T Consensus        94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~  173 (472)
T 4g1t_A           94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE  173 (472)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHH
Confidence            4456789999999999999999999987           34578888888877664  5799999999999999999999


Q ss_pred             HHHHHHHHHHH---hcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy1863         202 AFVNLGNCAMA---REDYVKGKELYVHALDNDATCIEALYNLGLAHKH----LNEYSDSLECFHKLQAIVPSMPEVLYQI  274 (425)
Q Consensus       202 ~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l  274 (425)
                      ++..+|.++..   .+++++|+..|+++++++|+++.++.++|..+..    .|++++|+.++++++..+|..+.++..+
T Consensus       174 ~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~l  253 (472)
T 4g1t_A          174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSA  253 (472)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence            99999988665   4667889999999999999999999999887765    4678899999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh------------------------hHHHHHHHHHHHHhhcCC
Q psy1863         275 ASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE------------------------MKHEAEKCILTSAKLIAP  328 (425)
Q Consensus       275 a~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~------------------------~~~~A~~~~~~a~~~~~~  328 (425)
                      |.+|...|++++|+..|++ +++.+|+++  +..+|.+                        ..++|...+++++...|.
T Consensus       254 g~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~  332 (472)
T 4g1t_A          254 AKFYRRKDEPDKAIELLKK-ALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN  332 (472)
T ss_dssp             HHHHHHTTCHHHHHHHHHH-HHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHcCchHHHHHHHHH-HHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc
Confidence            9999999999999999999 999999988  6666654                        357889999999999999


Q ss_pred             chhhHhhchHHHHHHHhHHhhchhh------------hcHHHHHHHHH-HHhcCCHHHHHHHHHHHHhhccC--------
Q psy1863         329 SIEDNFSNGYNWCVQSIRNSAHSSL------------AQDLEINKAVT-FLRMNDVSQAVDVLKSCDEMTSS--------  387 (425)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~la~~-~~~~g~~~~A~~~~~~~~~~~~~--------  387 (425)
                      ....+..+|..+...+....+...+            ...++..++.+ +...|++++|+..|+++.++.+.        
T Consensus       333 ~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~  412 (472)
T 4g1t_A          333 LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMK  412 (472)
T ss_dssp             TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred             hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH
Confidence            8888777775444333322222211            12344555543 45789999999999998765443        


Q ss_pred             -------------CccchhHHHHHhhhccCcCCCCcHHHHHHhHhHHhh
Q psy1863         388 -------------AATNLSFIYFLVSSEFQYLPTSEVPIYLENLLTVLQ  423 (425)
Q Consensus       388 -------------~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~  423 (425)
                                   .|.+...++.+...........+|+++++++++.-+
T Consensus       413 ~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~  461 (472)
T 4g1t_A          413 DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS  461 (472)
T ss_dssp             HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence                         233334444443333334467889999999987643

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.93  E-value=3.5e-24  Score=200.29  Aligned_cols=199  Identities=8%  Similarity=-0.033  Sum_probs=181.6

Q ss_pred             HHHHHHHHHHHcCC-HHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy1863         137 LEINKAVTFLRMND-VSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMA  212 (425)
Q Consensus       137 ~~~~~a~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  212 (425)
                      .+..+|.++...|+ +++|+..|++++   |.++.+|+++|.++...|++++|+..|+++++++|++..+|+++|.++..
T Consensus       133 a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~  212 (382)
T 2h6f_A          133 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE  212 (382)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH
Confidence            34778999999997 999999999999   99999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CH
Q psy1863         213 REDYVKGKELYVHALDNDATCIEALYNLGLAHKH-LNEYSDS-----LECFHKLQAIVPSMPEVLYQIASLYEITG--DV  284 (425)
Q Consensus       213 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~  284 (425)
                      +|++++|+.+|+++++++|++..+|+++|.++.. .|.+++|     +.+|++++.++|++..+|+++|.++...|  ++
T Consensus       213 ~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~  292 (382)
T 2h6f_A          213 FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKY  292 (382)
T ss_dssp             HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGC
T ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccch
Confidence            9999999999999999999999999999999999 5555888     59999999999999999999999999988  69


Q ss_pred             HHHHHHHHHHHHhcCcchH--HHHHHHh--h------------HHHHHHHHHHH-HhhcCCchhhHhhch
Q psy1863         285 EQASDVNENLLLEAVRNDA--LSQLHRE--M------------KHEAEKCILTS-AKLIAPSIEDNFSNG  337 (425)
Q Consensus       285 ~~A~~~~~~~a~~~~p~~~--~~~l~~~--~------------~~~A~~~~~~a-~~~~~~~~~~~~~~~  337 (425)
                      ++|+..+.+ + +.+|+++  +..++.+  .            .++|+.+|+++ ++++|.....|...+
T Consensus       293 ~~a~~~~~~-~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~  360 (382)
T 2h6f_A          293 PNLLNQLLD-L-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIG  360 (382)
T ss_dssp             HHHHHHHHH-H-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             HHHHHHHHH-h-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            999999999 7 8899888  6666666  1            37899999999 899998877666554

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.92  E-value=3.3e-23  Score=183.31  Aligned_cols=217  Identities=17%  Similarity=0.134  Sum_probs=198.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHHH
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD--EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN-------SAAFVN  205 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~  205 (425)
                      .+.+..+|..++..|++++|+.+|++++  ..++.++..+|.++...|++++|+..++++++..|.+       +.++..
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR   84 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence            4566889999999999999999999998  5668899999999999999999999999999998877       789999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q psy1863         206 LGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVE  285 (425)
Q Consensus       206 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  285 (425)
                      +|.++...|++++|+.+|++++...|.        +.++...|++++|+..+++++..+|..+.++..+|.++...|+++
T Consensus        85 l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (258)
T 3uq3_A           85 IGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP  156 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence            999999999999999999999999887        466778889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHH
Q psy1863         286 QASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLE  358 (425)
Q Consensus       286 ~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (425)
                      +|+.+|++ +++.+|+++  +..+|.+     ++++|+.+++++++..|...                         ..+
T Consensus       157 ~A~~~~~~-a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-------------------------~~~  210 (258)
T 3uq3_A          157 NAVKAYTE-MIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV-------------------------RAY  210 (258)
T ss_dssp             HHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------------------------HHH
T ss_pred             HHHHHHHH-HHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHH-------------------------HHH
Confidence            99999999 999999988  7778877     99999999999999988753                         345


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy1863         359 INKAVTFLRMNDVSQAVDVLKSCDEMT  385 (425)
Q Consensus       359 ~~la~~~~~~g~~~~A~~~~~~~~~~~  385 (425)
                      ..+|.++...|++++|+..++++.+..
T Consensus       211 ~~l~~~~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          211 IRKATAQIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence            667899999999999999999997666

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.92  E-value=1.3e-23  Score=187.85  Aligned_cols=239  Identities=14%  Similarity=0.099  Sum_probs=140.2

Q ss_pred             HHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHHH
Q psy1863          15 IIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHE   94 (425)
Q Consensus        15 ~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~   94 (425)
                      ...++..|..+...|+|++|++.++++++..        |........++..|...|++.                   +
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~l~~~~~~~~~~~-------------------~   55 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK--------YNSPYIYNRRAVCYYELAKYD-------------------L   55 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--------CCCSTTHHHHHHHHHHTTCHH-------------------H
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHHhhHH-------------------H
Confidence            3568899999999999999999999988766        544444444444444444332                   1


Q ss_pred             HHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHH
Q psy1863          95 AEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATN  171 (425)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~  171 (425)
                      +...+..+.                      .....+......+..+|.++...|++++|+..|++++   |..+.++..
T Consensus        56 A~~~~~~a~----------------------~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  113 (272)
T 3u4t_A           56 AQKDIETYF----------------------SKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQ  113 (272)
T ss_dssp             HHHHHHHHH----------------------TTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred             HHHHHHHHH----------------------hccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHH
Confidence            111111111                      1001112223334556666666666666666666665   555566666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC--
Q psy1863         172 LSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNE--  249 (425)
Q Consensus       172 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--  249 (425)
                      +|.++...|++++|+.+|+++++.+|.++.++..+|......+++++|+.+|+++++.+|+++.++..+|.++...|+  
T Consensus       114 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~  193 (272)
T 3u4t_A          114 IGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDT  193 (272)
T ss_dssp             HHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcch
Confidence            666666666666666666666666666666666666333333466666666666666666666666666666666665  


Q ss_pred             -HHHHHHHHHHHHhhC---CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         250 -YSDSLECFHKLQAIV---PS-----MPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       250 -~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                       +++|+..|+++++..   |+     ...++..+|.+|...|++++|+.+|++ +++++|+++
T Consensus       194 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-al~~~p~~~  255 (272)
T 3u4t_A          194 KQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKN-ILALDPTNK  255 (272)
T ss_dssp             SSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCH
T ss_pred             hhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCccHH
Confidence             555666666666554   32     124555666666666666666666666 666666655

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.92  E-value=2.7e-23  Score=174.66  Aligned_cols=167  Identities=17%  Similarity=0.198  Sum_probs=161.0

Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q psy1863         164 MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLA  243 (425)
Q Consensus       164 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~  243 (425)
                      +++.+|+++|.+|..+|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHH
Q psy1863         244 HKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAE  316 (425)
Q Consensus       244 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~  316 (425)
                      +...++++.|+..+.+++...|.++.++..+|.++..+|++++|+..|++ +++.+|+++  +..+|.+     ++++|+
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~-~l~~~p~~~~~~~~lg~~~~~~g~~~~A~  161 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEK-TISIKPGFIRAYQSIGLAYEGKGLRDEAV  161 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHH-HHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999 999999998  8888888     999999


Q ss_pred             HHHHHHHhhcCCchh
Q psy1863         317 KCILTSAKLIAPSIE  331 (425)
Q Consensus       317 ~~~~~a~~~~~~~~~  331 (425)
                      .+|+++++++|.+..
T Consensus       162 ~~~~~al~~~p~~a~  176 (184)
T 3vtx_A          162 KYFKKALEKEEKKAK  176 (184)
T ss_dssp             HHHHHHHHTTHHHHH
T ss_pred             HHHHHHHhCCccCHH
Confidence            999999999987643

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.91  E-value=3.8e-23  Score=181.35  Aligned_cols=207  Identities=14%  Similarity=0.133  Sum_probs=174.6

Q ss_pred             CcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy1863         130 HSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNL  206 (425)
Q Consensus       130 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  206 (425)
                      ........++.+|..+...|++++|+..|++++   |..+.++..+|.++...|++++|+..++++++.+|.+..++..+
T Consensus        18 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l   97 (243)
T 2q7f_A           18 GSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGA   97 (243)
T ss_dssp             ------------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHH
Confidence            334556777899999999999999999999998   88899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy1863         207 GNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQ  286 (425)
Q Consensus       207 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  286 (425)
                      |.++...|++++|+.+++++++..|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++
T Consensus        98 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  177 (243)
T 2q7f_A           98 GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE  177 (243)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhch
Q psy1863         287 ASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNG  337 (425)
Q Consensus       287 A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~  337 (425)
                      |+..+++ ++...|+++  +..++.+     ++++|..+++++++..|++.......+
T Consensus       178 A~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~  234 (243)
T 2q7f_A          178 ALSQFAA-VTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK  234 (243)
T ss_dssp             HHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred             HHHHHHH-HHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence            9999999 999999988  7777777     899999999999999999887665543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.91  E-value=5.1e-22  Score=175.58  Aligned_cols=179  Identities=9%  Similarity=0.008  Sum_probs=101.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcc---cch-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCD---EMT-------SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGN  208 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~---~~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  208 (425)
                      ..+|.++...|++++|+..+++++   |..       +.++..+|.++...|++++|+.+|++++...|.        +.
T Consensus        42 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~  113 (258)
T 3uq3_A           42 NNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------AD  113 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hH
Confidence            344555555555555555555555   222       455555566666666666666666665555554        33


Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy1863         209 CAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQAS  288 (425)
Q Consensus       209 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  288 (425)
                      ++...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|++++...|.++.++..+|.++...|++++|+
T Consensus       114 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~  193 (258)
T 3uq3_A          114 ILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAI  193 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHH
Confidence            44455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhc
Q psy1863         289 DVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLI  326 (425)
Q Consensus       289 ~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~  326 (425)
                      .++++ +++.+|+++  +..+|.+     ++++|..+++++++..
T Consensus       194 ~~~~~-al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          194 ADCNK-AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             HHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence            55555 555555555  4444444     5555555555555555

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.91  E-value=6.5e-22  Score=174.74  Aligned_cols=199  Identities=19%  Similarity=0.191  Sum_probs=188.1

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy1863         134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCA  210 (425)
Q Consensus       134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (425)
                      ....++.+|..+...|++++|+..|++++   |..+.++..+|.++...|++++|+..++++++.+|.+..++..+|.++
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~  115 (252)
T 2ho1_A           36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence            36778899999999999999999999998   888999999999999999999999999999999999999999999999


Q ss_pred             HHhcCHHHHHHHHHHHHh--cCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy1863         211 MAREDYVKGKELYVHALD--NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQAS  288 (425)
Q Consensus       211 ~~~g~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  288 (425)
                      ...|++++|+.+|++++.  ..|.++.++..+|.++...|++++|+.++++++...|.++.++..+|.++...|++++|+
T Consensus       116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  195 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR  195 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999999999  889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhH
Q psy1863         289 DVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDN  333 (425)
Q Consensus       289 ~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~  333 (425)
                      .++++ +++..|.++  +..++.+     ++++|..+++++++..|.+....
T Consensus       196 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  246 (252)
T 2ho1_A          196 QYYDL-FAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ  246 (252)
T ss_dssp             HHHHH-HHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred             HHHHH-HHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence            99999 999999888  5566555     99999999999999999877543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.91  E-value=1.4e-21  Score=169.11  Aligned_cols=200  Identities=16%  Similarity=0.090  Sum_probs=185.2

Q ss_pred             hhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy1863         133 LAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNC  209 (425)
Q Consensus       133 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  209 (425)
                      .....++.+|..+...|++++|+..+++++   |..+.++..+|.++...|++++|+.++++++..+|.+..++..+|.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~   85 (225)
T 2vq2_A            6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF   85 (225)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            345667899999999999999999999998   88899999999999999999999999999999999999999999999


Q ss_pred             HHHh-cCHHHHHHHHHHHHh--cCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy1863         210 AMAR-EDYVKGKELYVHALD--NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQ  286 (425)
Q Consensus       210 ~~~~-g~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  286 (425)
                      +... |++++|+.++++++.  ..|....++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  165 (225)
T 2vq2_A           86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD  165 (225)
T ss_dssp             HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence            9999 999999999999999  6777899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCc-chH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhH
Q psy1863         287 ASDVNENLLLEAVR-NDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDN  333 (425)
Q Consensus       287 A~~~~~~~a~~~~p-~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~  333 (425)
                      |+..+++ +++..| .++  +..++.+     +.++|..+++.+.+..|++....
T Consensus       166 A~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~  219 (225)
T 2vq2_A          166 ADYYFKK-YQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQ  219 (225)
T ss_dssp             HHHHHHH-HHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHH-HHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence            9999999 999999 777  4444433     88899999999999999887644

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.90  E-value=1.3e-21  Score=170.42  Aligned_cols=201  Identities=12%  Similarity=0.110  Sum_probs=132.0

Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863         164 MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADT-YNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL  242 (425)
Q Consensus       164 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  242 (425)
                      .++.+++.+|.+++..|++++|+..|+++++.+| .+..+++++|.++...|++++|+.+|++++..+|+++.++..+|.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   84 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA   84 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence            3456677777777777777777777777777776 666677777777777777777777777777777777777777777


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcc--hH--HHHHHHhh
Q psy1863         243 AHKHLNEYSDSLECFHKLQAIVPSMP-------EVLYQIASLYEITGDVEQASDVNENLLLEAVRN--DA--LSQLHREM  311 (425)
Q Consensus       243 ~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~--~~--~~~l~~~~  311 (425)
                      ++..+|++++|+..|+++++.+|+++       .++..+|.++...|++++|+..|++ +++.+|+  ++  +..+|.+-
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~~~l~~~~  163 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKH-ATDVTSKKWKTDALYSLGVLF  163 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HTTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHH-HHhcCCCcccHHHHHHHHHHH
Confidence            77777777777777777777777766       4567777777777777777777777 7777777  55  66666665


Q ss_pred             HHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccc
Q psy1863         312 KHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATN  391 (425)
Q Consensus       312 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  391 (425)
                      ...+...+.++..+.+......                           .+......+.+++|+..++++.++.|.++..
T Consensus       164 ~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~  216 (228)
T 4i17_A          164 YNNGADVLRKATPLASSNKEKY---------------------------ASEKAKADAAFKKAVDYLGEAVTLSPNRTEI  216 (228)
T ss_dssp             HHHHHHHHHHHGGGTTTCHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHhcccCCHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHH
Confidence            5555555555555544432111                           1111223455677777777776666555443


Q ss_pred             h
Q psy1863         392 L  392 (425)
Q Consensus       392 l  392 (425)
                      .
T Consensus       217 ~  217 (228)
T 4i17_A          217 K  217 (228)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.90  E-value=2.3e-22  Score=190.89  Aligned_cols=274  Identities=14%  Similarity=0.058  Sum_probs=213.8

Q ss_pred             HHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHH
Q psy1863          12 EQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREM   91 (425)
Q Consensus        12 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~   91 (425)
                      +..+..+...|..+...|++++|++.+++++.+.        |..                                   
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--------~~~-----------------------------------   81 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG--------TED-----------------------------------   81 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CSC-----------------------------------
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--------ccC-----------------------------------
Confidence            4567888999999999999999999998887643        110                                   


Q ss_pred             HHHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---------
Q psy1863          92 KHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---------  162 (425)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---------  162 (425)
                                                             ......++..+|.++...|++++|+..+++++         
T Consensus        82 ---------------------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  122 (411)
T 4a1s_A           82 ---------------------------------------LRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR  122 (411)
T ss_dssp             ---------------------------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ---------------------------------------hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCc
Confidence                                                   00011233667888888899999999888887         


Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhcC-----------------HHHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA------DTYNSAAFVNLGNCAMARED-----------------YVKG  219 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A  219 (425)
                      +..+.++..+|.+|...|++++|+.++++++..      .|....++.++|.++...|+                 +++|
T Consensus       123 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A  202 (411)
T 4a1s_A          123 LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRA  202 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHH
Confidence            455678889999999999999999999998887      45566788899999999999                 8999


Q ss_pred             HHHHHHHHhcC------cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHH
Q psy1863         220 KELYVHALDND------ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMP------EVLYQIASLYEITGDVEQA  287 (425)
Q Consensus       220 ~~~~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A  287 (425)
                      +.++++++.+.      +....++.++|.++...|++++|+.++++++.+.|...      .++..+|.++...|++++|
T Consensus       203 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  282 (411)
T 4a1s_A          203 VEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA  282 (411)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHH
Confidence            99998888763      33456888899999999999999999999988876433      3788899999999999999


Q ss_pred             HHHHHHHHHhcCcch------H--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhh
Q psy1863         288 SDVNENLLLEAVRND------A--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLA  354 (425)
Q Consensus       288 ~~~~~~~a~~~~p~~------~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (425)
                      +.++++ ++...|..      .  +..++.+     ++++|..++++++...+....                   ....
T Consensus       283 ~~~~~~-al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------~~~~  342 (411)
T 4a1s_A          283 AEHYKR-TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD-------------------RIGE  342 (411)
T ss_dssp             HHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------------------HHHH
T ss_pred             HHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-------------------hHHH
Confidence            999999 88876643      1  5566666     888899998888877543221                   1112


Q ss_pred             cHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccC
Q psy1863         355 QDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSS  387 (425)
Q Consensus       355 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  387 (425)
                      ..++..+|.+|...|++++|+..++++.++...
T Consensus       343 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  375 (411)
T 4a1s_A          343 ARACWSLGNAHSAIGGHERALKYAEQHLQLAXX  375 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence            356778999999999999999999999765543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.90  E-value=2e-22  Score=175.46  Aligned_cols=196  Identities=10%  Similarity=0.044  Sum_probs=174.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc---c-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---E-MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCA  210 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (425)
                      .+.++.+|..++..|++++|+..|++++   | .++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   86 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY   86 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence            3667899999999999999999999999   5 88899999999999999999999999999999999999999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCcCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc
Q psy1863         211 MAREDYVKGKELYVHALDNDATCI-------EALYNLGLAHKHLNEYSDSLECFHKLQAIVPS--MPEVLYQIASLYEIT  281 (425)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~  281 (425)
                      ..+|++++|+..|+++++.+|+++       .++.++|.++...|++++|+..|+++++.+|+  ++.++.++|.++...
T Consensus        87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~  166 (228)
T 4i17_A           87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNN  166 (228)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence            999999999999999999999998       67999999999999999999999999999999  999999999999876


Q ss_pred             CCHHHHHHHHHHHHHhcCcchH--HHHHHHh---hHHHHHHHHHHHHhhcCCchhhHhhc
Q psy1863         282 GDVEQASDVNENLLLEAVRNDA--LSQLHRE---MKHEAEKCILTSAKLIAPSIEDNFSN  336 (425)
Q Consensus       282 g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~  336 (425)
                      |+     ..+.+ +..+.+.++  +......   .+++|+.++++++++.|++......+
T Consensus       167 ~~-----~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l  220 (228)
T 4i17_A          167 GA-----DVLRK-ATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQ  220 (228)
T ss_dssp             HH-----HHHHH-HGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HH-----HHHHH-HHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence            54     45666 777766655  2222222   88999999999999999987655443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.90  E-value=1e-22  Score=204.77  Aligned_cols=169  Identities=19%  Similarity=0.240  Sum_probs=162.5

Q ss_pred             hhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy1863         133 LAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNC  209 (425)
Q Consensus       133 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  209 (425)
                      -..+.+.++|.++..+|++++|+..|++++   |.++.+++++|.+|..+|++++|+..|+++++++|+++.+++++|.+
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~   86 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            346777999999999999999999999999   99999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy1863         210 AMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASD  289 (425)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  289 (425)
                      +..+|++++|+.+|+++++++|+++.++.++|.+|..+|++++|+.+|+++++++|+++.++.++|.++..+|++++|.+
T Consensus        87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~  166 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE  166 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcch
Q psy1863         290 VNENLLLEAVRND  302 (425)
Q Consensus       290 ~~~~~a~~~~p~~  302 (425)
                      .+++ ++++.|+.
T Consensus       167 ~~~k-al~l~~~~  178 (723)
T 4gyw_A          167 RMKK-LVSIVADQ  178 (723)
T ss_dssp             HHHH-HHHHHHHH
T ss_pred             HHHH-HHHhChhH
Confidence            9999 99886654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.90  E-value=3.9e-22  Score=188.52  Aligned_cols=229  Identities=17%  Similarity=0.138  Sum_probs=166.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHH
Q psy1863         138 EINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN------SAA  202 (425)
Q Consensus       138 ~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~  202 (425)
                      +..+|.++...|++++|+.++++++         +..+.++..+|.++...|++++|+.++++++...|..      ..+
T Consensus        50 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  129 (406)
T 3sf4_A           50 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA  129 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHH
Confidence            3566778888888888888887776         3446677788888888888888888888888775432      346


Q ss_pred             HHHHHHHHHHhcC--------------------HHHHHHHHHHHHhc------CcCcHHHHHHHHHHHHHcCCHHHHHHH
Q psy1863         203 FVNLGNCAMARED--------------------YVKGKELYVHALDN------DATCIEALYNLGLAHKHLNEYSDSLEC  256 (425)
Q Consensus       203 ~~~la~~~~~~g~--------------------~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~  256 (425)
                      +..+|.++...|+                    +++|+.++++++.+      .|....++.++|.++...|++++|+.+
T Consensus       130 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  209 (406)
T 3sf4_A          130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA  209 (406)
T ss_dssp             HHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHH
T ss_pred             HHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            7788888888888                    88888888888766      333456777888888888888888888


Q ss_pred             HHHHHhhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcch------H--HHHHHHh-----hHHHHHH
Q psy1863         257 FHKLQAIVPSMPE------VLYQIASLYEITGDVEQASDVNENLLLEAVRND------A--LSQLHRE-----MKHEAEK  317 (425)
Q Consensus       257 ~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~------~--~~~l~~~-----~~~~A~~  317 (425)
                      +++++...|....      ++..+|.++...|++++|+.++++ ++...|..      .  +..+|.+     ++++|..
T Consensus       210 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  288 (406)
T 3sf4_A          210 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK-TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID  288 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH-HHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            8888877554332      777888888888888888888888 77765543      1  5555555     7788888


Q ss_pred             HHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q psy1863         318 CILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTS  386 (425)
Q Consensus       318 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  386 (425)
                      ++++++...+.....                   +....++..+|.+|...|++++|+..++++.+..+
T Consensus       289 ~~~~a~~~~~~~~~~-------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  338 (406)
T 3sf4_A          289 YHLKHLAIAQELNDR-------------------IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  338 (406)
T ss_dssp             HHHHHHHHHHHTTCH-------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCc-------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            888877765432211                   11134566788888888999999988888876543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.90  E-value=8.7e-22  Score=176.04  Aligned_cols=226  Identities=12%  Similarity=0.013  Sum_probs=193.3

Q ss_pred             HHHHcCCHHHHHHHHHhcc-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH
Q psy1863         144 TFLRMNDVSQAVDVLKSCD-------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDY  216 (425)
Q Consensus       144 ~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  216 (425)
                      .....|++++|+..|++++       |..+.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++
T Consensus        14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~   93 (275)
T 1xnf_A           14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF   93 (275)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred             ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence            3445678999999999988       356889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy1863         217 VKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLL  296 (425)
Q Consensus       217 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~  296 (425)
                      ++|+.+|++++..+|+++.++..+|.++...|++++|+..|+++++..|+++.....++.+ ...|++++|+..+.+ ++
T Consensus        94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~-~~  171 (275)
T 1xnf_A           94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQ-HF  171 (275)
T ss_dssp             HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHH-HH
Confidence            9999999999999999999999999999999999999999999999999998777666654 666999999999999 99


Q ss_pred             hcCcchH-HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCC
Q psy1863         297 EAVRNDA-LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMND  370 (425)
Q Consensus       297 ~~~p~~~-~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  370 (425)
                      ...|++. ...++..     +.++|+..+.+++...|...                     +....++..+|.+|...|+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------------~~~~~~~~~la~~~~~~g~  230 (275)
T 1xnf_A          172 EKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLA---------------------EHLSETNFYLGKYYLSLGD  230 (275)
T ss_dssp             HHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHH---------------------HHHHHHHHHHHHHHHHTTC
T ss_pred             hcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhccccccc---------------------ccccHHHHHHHHHHHHcCC
Confidence            9988877 3333333     77888888888876654311                     1113567889999999999


Q ss_pred             HHHHHHHHHHHHhhccCCccch
Q psy1863         371 VSQAVDVLKSCDEMTSSAATNL  392 (425)
Q Consensus       371 ~~~A~~~~~~~~~~~~~~~~~l  392 (425)
                      +++|+..|+++....|......
T Consensus       231 ~~~A~~~~~~al~~~p~~~~~~  252 (275)
T 1xnf_A          231 LDSATALFKLAVANNVHNFVEH  252 (275)
T ss_dssp             HHHHHHHHHHHHTTCCTTCHHH
T ss_pred             HHHHHHHHHHHHhCCchhHHHH
Confidence            9999999999987776554433

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.90  E-value=3.9e-22  Score=183.06  Aligned_cols=230  Identities=17%  Similarity=0.140  Sum_probs=180.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHH
Q psy1863         138 EINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN------SAA  202 (425)
Q Consensus       138 ~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~  202 (425)
                      +..+|.++...|++++|+.++++++         +..+.++..+|.++...|++++|+.+++++++..|..      ..+
T Consensus        46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  125 (338)
T 3ro2_A           46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA  125 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence            3677888889999999999988876         3456788899999999999999999999988876433      347


Q ss_pred             HHHHHHHHHHhcC--------------------HHHHHHHHHHHHhc------CcCcHHHHHHHHHHHHHcCCHHHHHHH
Q psy1863         203 FVNLGNCAMARED--------------------YVKGKELYVHALDN------DATCIEALYNLGLAHKHLNEYSDSLEC  256 (425)
Q Consensus       203 ~~~la~~~~~~g~--------------------~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~  256 (425)
                      +..+|.++...|+                    +++|+.++++++..      .|....++.++|.++...|++++|+.+
T Consensus       126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  205 (338)
T 3ro2_A          126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA  205 (338)
T ss_dssp             HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            8889999999999                    99999999988876      233466888999999999999999999


Q ss_pred             HHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcch------H--HHHHHHh-----hHHHHHH
Q psy1863         257 FHKLQAIVPSM------PEVLYQIASLYEITGDVEQASDVNENLLLEAVRND------A--LSQLHRE-----MKHEAEK  317 (425)
Q Consensus       257 ~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~------~--~~~l~~~-----~~~~A~~  317 (425)
                      +++++...|..      ..++..+|.++...|++++|+.++++ ++...|..      .  +..++.+     ++++|..
T Consensus       206 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  284 (338)
T 3ro2_A          206 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK-TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID  284 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            99998875532      23788899999999999999999999 88776543      1  5556665     8889999


Q ss_pred             HHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccC
Q psy1863         318 CILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSS  387 (425)
Q Consensus       318 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  387 (425)
                      ++++++...+.....                   .....++..+|.+|...|++++|+..++++.++.+.
T Consensus       285 ~~~~a~~~~~~~~~~-------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          285 YHLKHLAIAQELKDR-------------------IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHHHHHHHTCH-------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHhcCCc-------------------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            998888775433211                   112346778999999999999999999999765543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.90  E-value=1.4e-22  Score=203.81  Aligned_cols=167  Identities=18%  Similarity=0.228  Sum_probs=161.4

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL  242 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  242 (425)
                      |.++.++++||.++..+|++++|+.+|+++++++|++..+++++|.++..+|++++|+.+|+++++++|+++.+++++|.
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~   85 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN   85 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHH
Q psy1863         243 AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEA  315 (425)
Q Consensus       243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A  315 (425)
                      ++..+|++++|+++|+++++++|++..+++++|.++..+|++++|+..|++ +++++|+++  +.+++.+     ++++|
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~-Al~l~P~~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT-ALKLKPDFPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence            999999999999999999999999999999999999999999999999999 999999999  8888887     88999


Q ss_pred             HHHHHHHHhhcCCch
Q psy1863         316 EKCILTSAKLIAPSI  330 (425)
Q Consensus       316 ~~~~~~a~~~~~~~~  330 (425)
                      .+.+++++++.|+..
T Consensus       165 ~~~~~kal~l~~~~~  179 (723)
T 4gyw_A          165 DERMKKLVSIVADQL  179 (723)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChhHH
Confidence            999999999876554

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.90  E-value=1.3e-21  Score=176.85  Aligned_cols=166  Identities=12%  Similarity=0.104  Sum_probs=115.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH--HHHHH
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLG--NCAMA  212 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la--~~~~~  212 (425)
                      ...++.+|.++...|++++|+..+++  |.++.++..+|.++..+|++++|+..++++++.+|++.......+  .++..
T Consensus       101 ~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~  178 (291)
T 3mkr_A          101 TTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAG  178 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhC
Confidence            45566777777777777777777776  666777777777777777777777777777777776654433322  22334


Q ss_pred             hcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHH
Q psy1863         213 REDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQ-ASDVN  291 (425)
Q Consensus       213 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~  291 (425)
                      .|++++|+.+|+++++.+|+++.+++++|.++..+|++++|+..|++++..+|+++.++.++|.++...|+..+ +..++
T Consensus       179 ~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~  258 (291)
T 3mkr_A          179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYL  258 (291)
T ss_dssp             TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            46777777777777777777777777777777777777777777777777777777777777777777777654 45666


Q ss_pred             HHHHHhcCcchH
Q psy1863         292 ENLLLEAVRNDA  303 (425)
Q Consensus       292 ~~~a~~~~p~~~  303 (425)
                      ++ +++.+|+++
T Consensus       259 ~~-~~~~~P~~~  269 (291)
T 3mkr_A          259 SQ-LKDAHRSHP  269 (291)
T ss_dssp             HH-HHHHCTTCH
T ss_pred             HH-HHHhCCCCh
Confidence            77 777777777

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.89  E-value=1.4e-20  Score=168.49  Aligned_cols=218  Identities=17%  Similarity=0.160  Sum_probs=195.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc-cchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD-EMTSSAATNLSFIYFL----QGEVEQAEKMAEEACTADTYNSAAFVNLGNC  209 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  209 (425)
                      .+.++.+|..+...|++++|+.+|++++ +..+.+++.+|.++..    .|++++|+.+|+++++.+  ++.+++.+|.+
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~   83 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNL   83 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHH
Confidence            4456889999999999999999999999 8889999999999999    999999999999999885  89999999999


Q ss_pred             HHH----hcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-
Q psy1863         210 AMA----REDYVKGKELYVHALDNDATCIEALYNLGLAHKH----LNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI-  280 (425)
Q Consensus       210 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-  280 (425)
                      +..    .+++++|+.+|++++...  ++.++.++|.+|..    .|++++|+.+|+++++..  ++.+++.+|.++.. 
T Consensus        84 ~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~  159 (273)
T 1ouv_A           84 YYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAG  159 (273)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT
T ss_pred             HhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcC
Confidence            999    999999999999999874  79999999999999    999999999999999976  68899999999999 


Q ss_pred             ---cCCHHHHHHHHHHHHHhcCcchHHHHHHHh---------hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHh
Q psy1863         281 ---TGDVEQASDVNENLLLEAVRNDALSQLHRE---------MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNS  348 (425)
Q Consensus       281 ---~g~~~~A~~~~~~~a~~~~p~~~~~~l~~~---------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (425)
                         .+++++|+.+|++ +++..+...+..+|.+         ++++|+.+++++++..|                     
T Consensus       160 ~~~~~~~~~A~~~~~~-a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---------------------  217 (273)
T 1ouv_A          160 RGTPKDLKKALASYDK-ACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---------------------  217 (273)
T ss_dssp             SSSCCCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---------------------
T ss_pred             CCCCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---------------------
Confidence               9999999999999 9988655446666655         78999999999987644                     


Q ss_pred             hchhhhcHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcc
Q psy1863         349 AHSSLAQDLEINKAVTFLR----MNDVSQAVDVLKSCDEMTS  386 (425)
Q Consensus       349 ~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~  386 (425)
                            ...+..+|.+|..    .+++++|+.+|+++.+..+
T Consensus       218 ------~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~  253 (273)
T 1ouv_A          218 ------GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  253 (273)
T ss_dssp             ------HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             ------HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence                  2345678899998    9999999999999976654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.89  E-value=1.1e-21  Score=172.10  Aligned_cols=202  Identities=16%  Similarity=0.147  Sum_probs=167.5

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL  242 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  242 (425)
                      ...+.+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+|++++..+|.++.++..+|.
T Consensus        20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~   99 (243)
T 2q7f_A           20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN   99 (243)
T ss_dssp             ----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHH
Q psy1863         243 AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEA  315 (425)
Q Consensus       243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A  315 (425)
                      ++...|++++|+..++++++..|.++.++..+|.++...|++++|+.++++ +++..|+++  +..++.+     ++++|
T Consensus       100 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A  178 (243)
T 2q7f_A          100 VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQR-AVELNENDTEARFQFGMCLANEGMLDEA  178 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH-HHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999999999999999999999999999999999 999999888  7777776     88999


Q ss_pred             HHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcc
Q psy1863         316 EKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT  390 (425)
Q Consensus       316 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~  390 (425)
                      +..++++++..|...                         .++..+|.+|...|++++|+..++++.+..|..+.
T Consensus       179 ~~~~~~~~~~~~~~~-------------------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~  228 (243)
T 2q7f_A          179 LSQFAAVTEQDPGHA-------------------------DAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML  228 (243)
T ss_dssp             HHHHHHHHHHCTTCH-------------------------HHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHhCcccH-------------------------HHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHH
Confidence            999999999888653                         34567789999999999999999999877765544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.89  E-value=1.4e-20  Score=170.05  Aligned_cols=243  Identities=11%  Similarity=0.033  Sum_probs=198.9

Q ss_pred             HHHHHHHHHh-cCCcch-hhHHHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1863         118 YNWCVQSIRN-SAHSSL-AQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA  195 (425)
Q Consensus       118 ~~~~~~~~~~-~~~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  195 (425)
                      |..+++.... ....+. ..+....++.+|+..|+++.|+..++..-+....++..++..+...|++++|++.+++.+..
T Consensus        15 y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~   94 (291)
T 3mkr_A           15 YQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSR   94 (291)
T ss_dssp             HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Confidence            5555555433 222222 23455777999999999999998876644667788889999999999999999999999876


Q ss_pred             --CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy1863         196 --DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQ  273 (425)
Q Consensus       196 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  273 (425)
                        +|+++.+++.+|.++...|++++|+..+++     |.++.++..+|.++..+|++++|+..++++++.+|++......
T Consensus        95 ~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~  169 (291)
T 3mkr_A           95 SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLA  169 (291)
T ss_dssp             CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHH
Confidence              599999999999999999999999999998     8899999999999999999999999999999999987654443


Q ss_pred             HH--HHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHH
Q psy1863         274 IA--SLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQS  344 (425)
Q Consensus       274 la--~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  344 (425)
                      .+  .++...|++++|+..|++ +++..|+++  +..+|.+     ++++|+..+++++..+|.+..             
T Consensus       170 ~a~~~l~~~~~~~~eA~~~~~~-~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~-------------  235 (291)
T 3mkr_A          170 TAWVSLAAGGEKLQDAYYIFQE-MADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE-------------  235 (291)
T ss_dssp             HHHHHHHHCTTHHHHHHHHHHH-HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------------
T ss_pred             HHHHHHHhCchHHHHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------------
Confidence            33  333345899999999999 999999998  7777777     999999999999999998764             


Q ss_pred             hHHhhchhhhcHHHHHHHHHHHhcCCHHH-HHHHHHHHHhhccCCccc
Q psy1863         345 IRNSAHSSLAQDLEINKAVTFLRMNDVSQ-AVDVLKSCDEMTSSAATN  391 (425)
Q Consensus       345 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~  391 (425)
                                  ++.++|.++...|++.+ +..+++++.+..|..|.-
T Consensus       236 ------------~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~  271 (291)
T 3mkr_A          236 ------------TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI  271 (291)
T ss_dssp             ------------HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             ------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH
Confidence                        34556788888999976 568889998888776643

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.89  E-value=9e-21  Score=163.89  Aligned_cols=201  Identities=16%  Similarity=0.079  Sum_probs=182.9

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL  242 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  242 (425)
                      |..+.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+|++++..+|.++.++..+|.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~   84 (225)
T 2vq2_A            5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW   84 (225)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHc-CCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hH
Q psy1863         243 AHKHL-NEYSDSLECFHKLQA--IVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MK  312 (425)
Q Consensus       243 ~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~  312 (425)
                      ++... |++++|+..+++++.  ..|....++..+|.++...|++++|+.++++ +++..|+++  +..++.+     ++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKR-SLAAQPQFPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCchHHHHHHHHHHHcCCH
Confidence            99999 999999999999999  6667789999999999999999999999999 999999988  7777776     89


Q ss_pred             HHHHHHHHHHHhhcC-CchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCc
Q psy1863         313 HEAEKCILTSAKLIA-PSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAA  389 (425)
Q Consensus       313 ~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  389 (425)
                      ++|...++++++..| .....                         +..++.++...|++++|...++.+.+..|..+
T Consensus       164 ~~A~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~  216 (225)
T 2vq2_A          164 GDADYYFKKYQSRVEVLQADD-------------------------LLLGWKIAKALGNAQAAYEYEAQLQANFPYSE  216 (225)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHH-------------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHhCCCCCHHH-------------------------HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence            999999999999988 65432                         23456788899999999999999876665444

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.89  E-value=1.9e-20  Score=176.29  Aligned_cols=224  Identities=13%  Similarity=0.176  Sum_probs=182.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------H
Q psy1863         137 LEINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN-------S  200 (425)
Q Consensus       137 ~~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~  200 (425)
                      .++.+|..+...|++++|+..|++++         +..+.+++.+|.+|...|++++|+.++.+++++.+..       .
T Consensus       105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  184 (383)
T 3ulq_A          105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL  184 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence            34568999999999999999999997         2356899999999999999999999999999885433       4


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hC-CCCH
Q psy1863         201 AAFVNLGNCAMAREDYVKGKELYVHALDNDATC------IEALYNLGLAHKHLNEYSDSLECFHKLQA-----IV-PSMP  268 (425)
Q Consensus       201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~-p~~~  268 (425)
                      .++.++|.++...|++++|+.+|++++.+.|..      ..++.++|.+|..+|++++|+.++++++.     .+ |..+
T Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  264 (383)
T 3ulq_A          185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP  264 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence            579999999999999999999999999885432      46899999999999999999999999999     45 7778


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcch--H-----HHHHHHh-----h---HHHHHHHHHHHHhhcCCchhhH
Q psy1863         269 EVLYQIASLYEITGDVEQASDVNENLLLEAVRND--A-----LSQLHRE-----M---KHEAEKCILTSAKLIAPSIEDN  333 (425)
Q Consensus       269 ~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~--~-----~~~l~~~-----~---~~~A~~~~~~a~~~~~~~~~~~  333 (425)
                      .++.++|.++..+|++++|..++++ +++..+..  +     +..++.+     +   ..+|+..+++.           
T Consensus       265 ~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-----------  332 (383)
T 3ulq_A          265 QAYFLITQIHYKLGKIDKAHEYHSK-GMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-----------  332 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-----------
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-----------
Confidence            8999999999999999999999999 99885432  2     3444444     2   33444443332           


Q ss_pred             hhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccC
Q psy1863         334 FSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSS  387 (425)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  387 (425)
                                     ...+....++..+|.+|...|++++|+..++++.+....
T Consensus       333 ---------------~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~  371 (383)
T 3ulq_A          333 ---------------MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL  371 (383)
T ss_dssp             ---------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred             ---------------cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence                           111222456678999999999999999999999765543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.89  E-value=5e-21  Score=169.04  Aligned_cols=202  Identities=16%  Similarity=0.077  Sum_probs=185.2

Q ss_pred             cch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHH
Q psy1863         163 EMT-SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLG  241 (425)
Q Consensus       163 ~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la  241 (425)
                      |.. +.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.+|++++..+|.++.++..+|
T Consensus        33 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la  112 (252)
T 2ho1_A           33 RDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYG  112 (252)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHH
Confidence            444 7899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hH
Q psy1863         242 LAHKHLNEYSDSLECFHKLQA--IVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MK  312 (425)
Q Consensus       242 ~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~  312 (425)
                      .++...|++++|+.++++++.  ..|.+..++..+|.++...|++++|+.++++ +++..|.++  +..++.+     ++
T Consensus       113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~  191 (252)
T 2ho1_A          113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEK-SLRLNRNQPSVALEMADLLYKEREY  191 (252)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCcccHHHHHHHHHHHHHcCCH
Confidence            999999999999999999999  8888899999999999999999999999999 999999988  7777776     89


Q ss_pred             HHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcc
Q psy1863         313 HEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT  390 (425)
Q Consensus       313 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~  390 (425)
                      ++|...++++++..|....                         .+..++.++...|++++|...++++.+..|..+.
T Consensus       192 ~~A~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  244 (252)
T 2ho1_A          192 VPARQYYDLFAQGGGQNAR-------------------------SLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE  244 (252)
T ss_dssp             HHHHHHHHHHHTTSCCCHH-------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred             HHHHHHHHHHHHhCcCcHH-------------------------HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence            9999999999998886543                         3445678899999999999999999777655443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.89  E-value=7.7e-22  Score=190.86  Aligned_cols=205  Identities=13%  Similarity=0.062  Sum_probs=160.2

Q ss_pred             CHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q psy1863         150 DVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEV-EQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVH  225 (425)
Q Consensus       150 ~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  225 (425)
                      .+++++..+.+..   +..+.+++.+|.++...|++ ++|+.+|+++++.+|+++.+++.+|.+|...|++++|+.+|++
T Consensus        83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  162 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG  162 (474)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3556666666555   66778888888888888888 8888888888888888888888888888888888888888888


Q ss_pred             HHhcCcCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------CCHHHHH
Q psy1863         226 ALDNDATCIEALYNLGLAHKHL---------NEYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT--------GDVEQAS  288 (425)
Q Consensus       226 al~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~  288 (425)
                      +++++|+ ..++.++|.++...         |++++|+..|+++++++|+++.+++.+|.++...        |++++|+
T Consensus       163 al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~  241 (474)
T 4abn_A          163 ALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL  241 (474)
T ss_dssp             HHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence            8888887 67888888888888         8888888888888888888888888888888887        8888888


Q ss_pred             HHHHHHHHhcCc---chH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHH
Q psy1863         289 DVNENLLLEAVR---NDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLE  358 (425)
Q Consensus       289 ~~~~~~a~~~~p---~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (425)
                      .+|++ +++++|   +++  +.++|.+     ++++|+..|++++++.|.+..                         .+
T Consensus       242 ~~~~~-al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~-------------------------a~  295 (474)
T 4abn_A          242 SAYAQ-AEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE-------------------------PQ  295 (474)
T ss_dssp             HHHHH-HHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------------------------HH
T ss_pred             HHHHH-HHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------------------------HH
Confidence            88888 888888   666  7777776     788888888888888877643                         33


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHH
Q psy1863         359 INKAVTFLRMNDVSQAVDVLKSC  381 (425)
Q Consensus       359 ~~la~~~~~~g~~~~A~~~~~~~  381 (425)
                      ..++.++...|++++|++.+.+.
T Consensus       296 ~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          296 QREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHhccc
Confidence            44566677777777777655443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.88  E-value=3.7e-21  Score=186.10  Aligned_cols=186  Identities=15%  Similarity=0.054  Sum_probs=174.6

Q ss_pred             chhhHHHHHHHHHHHHcCCH-HHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy1863         132 SLAQDLEINKAVTFLRMNDV-SQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLG  207 (425)
Q Consensus       132 ~~~~~~~~~~a~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  207 (425)
                      +.....++.+|.++...|++ ++|+..|++++   |..+.+++.+|.+|...|++++|+.+|+++++.+|+ ..++.++|
T Consensus        99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg  177 (474)
T 4abn_A           99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLS  177 (474)
T ss_dssp             CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHH
Confidence            34577889999999999999 99999999999   899999999999999999999999999999999999 79999999


Q ss_pred             HHHHHh---------cCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCC---CC
Q psy1863         208 NCAMAR---------EDYVKGKELYVHALDNDATCIEALYNLGLAHKHL--------NEYSDSLECFHKLQAIVP---SM  267 (425)
Q Consensus       208 ~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p---~~  267 (425)
                      .++...         |++++|+.+|+++++++|+++.+|.++|.++...        |++++|+.+|+++++++|   ++
T Consensus       178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  257 (474)
T 4abn_A          178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN  257 (474)
T ss_dssp             HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred             HHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC
Confidence            999999         9999999999999999999999999999999999        999999999999999999   99


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHH
Q psy1863         268 PEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCI  319 (425)
Q Consensus       268 ~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~  319 (425)
                      +.+++++|.+|..+|++++|+..|++ +++++|+++  +..++.+     ++++|+..+
T Consensus       258 ~~~~~~lg~~~~~~g~~~~A~~~~~~-al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          258 PDLHLNRATLHKYEESYGEALEGFSQ-AAALDPAWPEPQQREQQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999 999999998  7777766     555555543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.88  E-value=8.7e-22  Score=186.91  Aligned_cols=269  Identities=14%  Similarity=0.102  Sum_probs=219.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHH
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTS----SAATNLSFIYFLQGEVEQAEKMAEEACTA------DTYNSA  201 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~  201 (425)
                      ...++.+|..+...|++++|+..|++++   |.++    .++..+|.++...|++++|+.++++++..      .|....
T Consensus        48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  127 (411)
T 4a1s_A           48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK  127 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence            4455688999999999999999999999   5544    68999999999999999999999999988      566778


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhc------CcCcHHHHHHHHHHHHHcCC-----------------HHHHHHHHH
Q psy1863         202 AFVNLGNCAMAREDYVKGKELYVHALDN------DATCIEALYNLGLAHKHLNE-----------------YSDSLECFH  258 (425)
Q Consensus       202 ~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~  258 (425)
                      ++..+|.++...|++++|+.+|++++..      .|....++.++|.++...|+                 +++|+.+++
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~  207 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ  207 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            8999999999999999999999999998      55667899999999999999                 999999999


Q ss_pred             HHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--------HHHHHHh-----hHHHHHHHH
Q psy1863         259 KLQAIVP------SMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--------LSQLHRE-----MKHEAEKCI  319 (425)
Q Consensus       259 ~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--------~~~l~~~-----~~~~A~~~~  319 (425)
                      +++.+.+      ....++..+|.++...|++++|+.++++ +++..|...        +..++.+     ++++|+.++
T Consensus       208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  286 (411)
T 4a1s_A          208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE-RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY  286 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH-HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            9988642      3446899999999999999999999999 998876432        5666666     999999999


Q ss_pred             HHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcc---chhHHH
Q psy1863         320 LTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT---NLSFIY  396 (425)
Q Consensus       320 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~l~~~~  396 (425)
                      ++++...+.....                   .....++..+|.+|..+|++++|+..++++....+....   ......
T Consensus       287 ~~al~~~~~~~~~-------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  347 (411)
T 4a1s_A          287 KRTLALAVELGER-------------------EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACW  347 (411)
T ss_dssp             HHHHHHHHHTTCH-------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCH-------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHH
Confidence            9999886643211                   112356778999999999999999999999766544322   222333


Q ss_pred             HHhhhccCcCCCCcHHHHHHhHhHHhh
Q psy1863         397 FLVSSEFQYLPTSEVPIYLENLLTVLQ  423 (425)
Q Consensus       397 ~l~~~~~~~~~~~ea~~~~~~~l~~~~  423 (425)
                      .+...........+|..++++++++.+
T Consensus       348 ~la~~~~~~g~~~~A~~~~~~al~~~~  374 (411)
T 4a1s_A          348 SLGNAHSAIGGHERALKYAEQHLQLAX  374 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence            333334444578899999999988754

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.88  E-value=1.5e-21  Score=184.57  Aligned_cols=269  Identities=14%  Similarity=0.092  Sum_probs=217.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHH
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMT----SSAATNLSFIYFLQGEVEQAEKMAEEACTA------DTYNSA  201 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~  201 (425)
                      ...++.+|..+...|++++|+.+|++++   |.+    ..++..+|.++...|++++|+.++++++..      .|....
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   88 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   88 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            3445788999999999999999999998   444    478999999999999999999999999877      344567


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc------HHHHHHHHHHHHHcCC--------------------HHHHHH
Q psy1863         202 AFVNLGNCAMAREDYVKGKELYVHALDNDATC------IEALYNLGLAHKHLNE--------------------YSDSLE  255 (425)
Q Consensus       202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~--------------------~~~A~~  255 (425)
                      ++..+|.++...|++++|+.++++++...|..      ..++.++|.++...|+                    +++|+.
T Consensus        89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~  168 (406)
T 3sf4_A           89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD  168 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence            89999999999999999999999999986643      5589999999999999                    999999


Q ss_pred             HHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--------HHHHHHh-----hHHHHH
Q psy1863         256 CFHKLQAIV------PSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--------LSQLHRE-----MKHEAE  316 (425)
Q Consensus       256 ~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--------~~~l~~~-----~~~~A~  316 (425)
                      .+.+++.+.      |....++..+|.++...|++++|+.++++ +++..|..+        +..+|.+     ++++|.
T Consensus       169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  247 (406)
T 3sf4_A          169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ-RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS  247 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH-HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence            999998873      33456899999999999999999999999 998765432        5666666     899999


Q ss_pred             HHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcc---chh
Q psy1863         317 KCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT---NLS  393 (425)
Q Consensus       317 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~l~  393 (425)
                      .++++++...|.....                   .....++..+|.+|...|++++|+..++++....+....   ...
T Consensus       248 ~~~~~al~~~~~~~~~-------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  308 (406)
T 3sf4_A          248 EYYKKTLLLARQLKDR-------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGR  308 (406)
T ss_dssp             HHHHHHHHHHHHTTCH-------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhCcCc-------------------hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence            9999999876543211                   112356778999999999999999999999776554332   122


Q ss_pred             HHHHHhhhccCcCCCCcHHHHHHhHhHHhh
Q psy1863         394 FIYFLVSSEFQYLPTSEVPIYLENLLTVLQ  423 (425)
Q Consensus       394 ~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~  423 (425)
                      ....+...........+|..++++++++.+
T Consensus       309 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~  338 (406)
T 3sf4_A          309 ACWSLGNAYTALGNHDQAMHFAEKHLEISR  338 (406)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            333333333344478899999999988754

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.88  E-value=3.2e-19  Score=173.54  Aligned_cols=353  Identities=12%  Similarity=0.093  Sum_probs=250.0

Q ss_pred             HHHHHHHhhHHhc----cccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcch----hhhhcchhhcccchhHH
Q psy1863          15 IIGLIDESCICAR----NQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSN----INRKKNARAVRNDALSQ   86 (425)
Q Consensus        15 ~~~l~~~~~~~~~----~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~d~l~~   86 (425)
                      +..+..-+..+..    .+++++|++.+++|.+..          .......++..|..    .+.+.       .++.-
T Consensus        39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----------~~~a~~~Lg~~y~~g~g~~~~~~-------~A~~~  101 (490)
T 2xm6_A           39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----------YTPAEYVLGLRYMNGEGVPQDYA-------QAVIW  101 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTSSSCCCHH-------HHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHcCCCCCCCHH-------HHHHH
Confidence            4566777777777    899999999999886532          22344555555544    22222       11111


Q ss_pred             HHHHHHHHHHHHHHHhhhhhh--hchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHH----cCCHHHHHHHHHh
Q psy1863          87 LHREMKHEAEKCILTSAKLIA--PSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLR----MNDVSQAVDVLKS  160 (425)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~  160 (425)
                      +.+...............+..  .-+..++..+..|+...... .    ..+..+.+|.+|..    .+++++|+.+|++
T Consensus       102 ~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~  176 (490)
T 2xm6_A          102 YKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-G----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSK  176 (490)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            111100000000001111110  11134666677777766554 1    24566888999988    8899999999999


Q ss_pred             cc-cchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCc
Q psy1863         161 CD-EMTSSAATNLSFIYFL----QGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMA----REDYVKGKELYVHALDNDA  231 (425)
Q Consensus       161 ~~-~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~  231 (425)
                      +. ..++.+++.+|.+|..    .+++++|+.+|+++++.  .++.+++.+|.+|..    .+++++|+.+|+++++.  
T Consensus       177 a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--  252 (490)
T 2xm6_A          177 AAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--  252 (490)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--
T ss_pred             HHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--
Confidence            98 7788999999999998    89999999999999875  578899999999987    88999999999999876  


Q ss_pred             CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhcCcch
Q psy1863         232 TCIEALYNLGLAHKH----LNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT-----GDVEQASDVNENLLLEAVRND  302 (425)
Q Consensus       232 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~a~~~~p~~  302 (425)
                      .++.+++++|.+|..    .+++++|+.+|+++.+.  .++.+++.+|.+|...     +++++|+.+|++ +.+..+..
T Consensus       253 ~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~-a~~~~~~~  329 (490)
T 2xm6_A          253 GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTK-SAEQGDAT  329 (490)
T ss_dssp             TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH-HHHTTCHH
T ss_pred             CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH-HHhcCCHH
Confidence            567889999999998    89999999999999765  5788999999999988     899999999999 98876655


Q ss_pred             HHHHHHHh--------hHHHHHHHHHHHHhhcCCchhhHhhchHHHHH----HHhH-------HhhchhhhcHHHHHHHH
Q psy1863         303 ALSQLHRE--------MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCV----QSIR-------NSAHSSLAQDLEINKAV  363 (425)
Q Consensus       303 ~~~~l~~~--------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~~~-------~~~~~~~~~~~~~~la~  363 (425)
                      .+..+|.+        ++++|+.+|+++.+.  .+......+|..+..    ....       ..+...-.+..+.++|.
T Consensus       330 a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~  407 (490)
T 2xm6_A          330 AQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGE  407 (490)
T ss_dssp             HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            56667666        678999999999887  445556666544333    1111       12222224677888999


Q ss_pred             HHHh----cCCHHHHHHHHHHHHhhccCCccchhHHHHH
Q psy1863         364 TFLR----MNDVSQAVDVLKSCDEMTSSAATNLSFIYFL  398 (425)
Q Consensus       364 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l  398 (425)
                      +|..    .+++++|+.+|+++....+..|.+....+.+
T Consensus       408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l  446 (490)
T 2xm6_A          408 IYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITE  446 (490)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHH
Confidence            9998    8999999999999987765434444444443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.87  E-value=1.8e-20  Score=156.64  Aligned_cols=170  Identities=19%  Similarity=0.254  Sum_probs=162.4

Q ss_pred             hhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy1863         133 LAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNC  209 (425)
Q Consensus       133 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  209 (425)
                      .....+..+|..+...|++++|+..+++++   |..+.++..+|.++...|++++|+.+++++++..|.++.++..+|.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~   85 (186)
T 3as5_A            6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT   85 (186)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            345667889999999999999999999998   78899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy1863         210 AMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASD  289 (425)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  289 (425)
                      +...|++++|+.++++++..+|.++.++..+|.++...|++++|+.++++++...|.++.++..+|.++...|++++|..
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  165 (186)
T 3as5_A           86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP  165 (186)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcchH
Q psy1863         290 VNENLLLEAVRNDA  303 (425)
Q Consensus       290 ~~~~~a~~~~p~~~  303 (425)
                      ++++ +++..|+++
T Consensus       166 ~~~~-~~~~~~~~~  178 (186)
T 3as5_A          166 HFKK-ANELDEGAS  178 (186)
T ss_dssp             HHHH-HHHHHHCCC
T ss_pred             HHHH-HHHcCCCch
Confidence            9999 998887764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.87  E-value=7.1e-21  Score=163.29  Aligned_cols=173  Identities=15%  Similarity=0.077  Sum_probs=148.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHhcC
Q psy1863         136 DLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATN----------------LSFIYFLQGEVEQAEKMAEEACTAD  196 (425)
Q Consensus       136 ~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~----------------lg~~~~~~g~~~~A~~~~~~al~~~  196 (425)
                      +..+..|..++..|++++|+..|++++   |.++.+++.                +|.++...|++++|+..|+++++.+
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   84 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA   84 (208)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            345788999999999999999999998   888899999                9999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCHHHHHHH
Q psy1863         197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNE--YSDSLECFHKLQAIVPSMPEVLYQI  274 (425)
Q Consensus       197 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l  274 (425)
                      |+++.+++++|.++...|++++|+.+|+++++++|+++.+++++|.+|...|+  ...+...+.+++...| ...+++.+
T Consensus        85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~  163 (208)
T 3urz_A           85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRD  163 (208)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHH
Confidence            99999999999999999999999999999999999999999999999987764  4566777777754332 23467889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhcCcchH-HHHHHHh
Q psy1863         275 ASLYEITGDVEQASDVNENLLLEAVRNDA-LSQLHRE  310 (425)
Q Consensus       275 a~~~~~~g~~~~A~~~~~~~a~~~~p~~~-~~~l~~~  310 (425)
                      |.++...|++++|+.+|++ +++++|++. ...+..+
T Consensus       164 g~~~~~~~~~~~A~~~~~~-al~l~P~~~~~~~l~~i  199 (208)
T 3urz_A          164 GLSKLFTTRYEKARNSLQK-VILRFPSTEAQKTLDKI  199 (208)
T ss_dssp             HHHHHHHHTHHHHHHHHHH-HTTTSCCHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHH-HHHhCCCHHHHHHHHHH
Confidence            9999999999999999999 999999876 4444443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.87  E-value=6e-22  Score=160.61  Aligned_cols=143  Identities=14%  Similarity=0.128  Sum_probs=125.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHH
Q psy1863         141 KAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYV  217 (425)
Q Consensus       141 ~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  217 (425)
                      +|.++...|++++|+..+++++   |..+.+++.+|.+|+..|++++|+.+|+++++++|+++.++.++|.++...|+++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence            5777888889999999999988   7778888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy1863         218 KGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC-FHKLQAIVPSMPEVLYQIASLYEITGD  283 (425)
Q Consensus       218 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~g~  283 (425)
                      +|+.+|+++++++|+++.++.++|.++...|++++|... ++++++++|+++.++..++.++...|+
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            999999999999999999999999999999999877765 589999999999999999988887775

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.87  E-value=3.7e-21  Score=176.52  Aligned_cols=267  Identities=14%  Similarity=0.100  Sum_probs=212.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcc---cch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHH
Q psy1863         137 LEINKAVTFLRMNDVSQAVDVLKSCD---EMT----SSAATNLSFIYFLQGEVEQAEKMAEEACTA------DTYNSAAF  203 (425)
Q Consensus       137 ~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~  203 (425)
                      .++..|..+...|++++|+..|++++   |.+    ..++..+|.++...|++++|+.++++++..      .|....++
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   86 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS   86 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence            34677999999999999999999998   444    578899999999999999999999999887      34556789


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCcCc------HHHHHHHHHHHHHcCC--------------------HHHHHHHH
Q psy1863         204 VNLGNCAMAREDYVKGKELYVHALDNDATC------IEALYNLGLAHKHLNE--------------------YSDSLECF  257 (425)
Q Consensus       204 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~--------------------~~~A~~~~  257 (425)
                      ..+|.++...|++++|+.++++++...|..      ..++..+|.++...|+                    +++|+..+
T Consensus        87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~  166 (338)
T 3ro2_A           87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY  166 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence            999999999999999999999999885533      4589999999999999                    99999999


Q ss_pred             HHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--------HHHHHHh-----hHHHHHHH
Q psy1863         258 HKLQAIV------PSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--------LSQLHRE-----MKHEAEKC  318 (425)
Q Consensus       258 ~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--------~~~l~~~-----~~~~A~~~  318 (425)
                      ++++...      |....++..+|.++...|++++|+.++++ +++..|...        +..++.+     ++++|..+
T Consensus       167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  245 (338)
T 3ro2_A          167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ-RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY  245 (338)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9998763      23456899999999999999999999999 998765432        5566665     89999999


Q ss_pred             HHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcc---chhHH
Q psy1863         319 ILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT---NLSFI  395 (425)
Q Consensus       319 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~l~~~  395 (425)
                      +++++...+.....                   .....++..+|.++...|++++|+..++++....+....   .....
T Consensus       246 ~~~al~~~~~~~~~-------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  306 (338)
T 3ro2_A          246 YKKTLLLARQLKDR-------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC  306 (338)
T ss_dssp             HHHHHHHHHHTTCH-------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHhhcch-------------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            99998876543211                   112356778999999999999999999999765543322   12223


Q ss_pred             HHHhhhccCcCCCCcHHHHHHhHhHHhh
Q psy1863         396 YFLVSSEFQYLPTSEVPIYLENLLTVLQ  423 (425)
Q Consensus       396 ~~l~~~~~~~~~~~ea~~~~~~~l~~~~  423 (425)
                      ..+...........+|..++++++++.+
T Consensus       307 ~~la~~~~~~g~~~~A~~~~~~a~~~~~  334 (338)
T 3ro2_A          307 WSLGNAYTALGNHDQAMHFAEKHLEISR  334 (338)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            3333333334478899999999988764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.87  E-value=1.2e-19  Score=165.43  Aligned_cols=220  Identities=10%  Similarity=0.004  Sum_probs=191.7

Q ss_pred             HHHHHHHHhcc---cchHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHh
Q psy1863         152 SQAVDVLKSCD---EMTSSAATNLSFIYFL-------QGEV-------EQAEKMAEEACT-ADTYNSAAFVNLGNCAMAR  213 (425)
Q Consensus       152 ~~A~~~~~~~~---~~~~~~~~~lg~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~  213 (425)
                      ++|+..|++++   |.++.+|+.+|..+..       .|++       ++|+..|++++. ++|++..+|..+|.++...
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            67889999998   9999999999999874       5885       999999999999 7999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCcCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Q psy1863         214 EDYVKGKELYVHALDNDATCIE-ALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI-TGDVEQASDVN  291 (425)
Q Consensus       214 g~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~  291 (425)
                      |++++|+..|+++++..|.++. +|.++|.++.+.|++++|+..|+++++..|....++...+.+... .|++++|+.+|
T Consensus       113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~  192 (308)
T 2ond_A          113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF  192 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999886 999999999999999999999999999999998888877776544 79999999999


Q ss_pred             HHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhc--CCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHH
Q psy1863         292 ENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLI--APSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKA  362 (425)
Q Consensus       292 ~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la  362 (425)
                      ++ +++.+|+++  |..++.+     ++++|...|++++...  |...                       ...+|...+
T Consensus       193 ~~-al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~-----------------------~~~l~~~~~  248 (308)
T 2ond_A          193 EL-GLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK-----------------------SGEIWARFL  248 (308)
T ss_dssp             HH-HHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG-----------------------CHHHHHHHH
T ss_pred             HH-HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH-----------------------HHHHHHHHH
Confidence            99 999999988  7777766     8999999999999863  2110                       124566677


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhccCCccchhHH
Q psy1863         363 VTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFI  395 (425)
Q Consensus       363 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~  395 (425)
                      ..+...|++++|...++++.+..|..+......
T Consensus       249 ~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~~~  281 (308)
T 2ond_A          249 AFESNIGDLASILKVEKRRFTAFREEYEGKETA  281 (308)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHTTTTTSSCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHcccccccchHH
Confidence            888889999999999999988888766655443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.87  E-value=1.7e-19  Score=169.39  Aligned_cols=221  Identities=11%  Similarity=0.069  Sum_probs=180.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CH
Q psy1863         137 LEINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTY-------NS  200 (425)
Q Consensus       137 ~~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~  200 (425)
                      .++.+|..+...|++++|+..|++++         +..+.+++.+|.+|...|++++|+.+++++++..+.       ..
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  182 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI  182 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence            45778999999999999999999997         346789999999999999999999999999987543       24


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCCHH
Q psy1863         201 AAFVNLGNCAMAREDYVKGKELYVHALDNDA------TCIEALYNLGLAHKHLNEYSDSLECFHKLQA-----IVPSMPE  269 (425)
Q Consensus       201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~p~~~~  269 (425)
                      .++.++|.++...|++++|+.+|++++.+.+      ....++.++|.+|..+|++++|+.++++++.     .+|..+.
T Consensus       183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  262 (378)
T 3q15_A          183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK  262 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence            5789999999999999999999999998733      2356899999999999999999999999999     7777788


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcch--H-----HHHHHHh-----h---HHHHHHHHHHHHhhcCCchhhHh
Q psy1863         270 VLYQIASLYEITGDVEQASDVNENLLLEAVRND--A-----LSQLHRE-----M---KHEAEKCILTSAKLIAPSIEDNF  334 (425)
Q Consensus       270 ~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~--~-----~~~l~~~-----~---~~~A~~~~~~a~~~~~~~~~~~~  334 (425)
                      ++..+|.++..+|++++|+.++++ +++..+..  +     +..++.+     +   ..+|+.++++             
T Consensus       263 ~~~~la~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-------------  328 (378)
T 3q15_A          263 VLFGLSWTLCKAGQTQKAFQFIEE-GLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-------------  328 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHH-HHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-------------
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-------------
Confidence            999999999999999999999999 99985542  2     3333333     2   3344444333             


Q ss_pred             hchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy1863         335 SNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEM  384 (425)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  384 (425)
                                   ....+....+...+|.+|...|++++|+..|+++...
T Consensus       329 -------------~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          329 -------------KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             -------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -------------CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence                         1111122345678999999999999999999998543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.87  E-value=5.5e-20  Score=164.24  Aligned_cols=215  Identities=11%  Similarity=-0.040  Sum_probs=185.4

Q ss_pred             hhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy1863         133 LAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNC  209 (425)
Q Consensus       133 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  209 (425)
                      .....+..+|.++...|++++|+..|++++   |..+.++..+|.++...|++++|+.+|+++++.+|.++.++..+|.+
T Consensus        41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~  120 (275)
T 1xnf_A           41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA  120 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHH
Confidence            346677899999999999999999999999   88999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy1863         210 AMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASD  289 (425)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  289 (425)
                      +...|++++|+.+|++++..+|+++.....++.+ ...|++++|+..+.+++...|.+...+. ++.++...++.++|+.
T Consensus       121 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~  198 (275)
T 1xnf_A          121 LYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLME  198 (275)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHH
Confidence            9999999999999999999999998777666654 6679999999999999999998776654 7777888899999999


Q ss_pred             HHHHHHHhcCcch----H--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHH
Q psy1863         290 VNENLLLEAVRND----A--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLE  358 (425)
Q Consensus       290 ~~~~~a~~~~p~~----~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (425)
                      .+.+ ++...|..    +  +..+|.+     ++++|..+|++++...|.+...                          
T Consensus       199 ~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--------------------------  251 (275)
T 1xnf_A          199 RLKA-DATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE--------------------------  251 (275)
T ss_dssp             HHHH-HCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH--------------------------
T ss_pred             HHHH-HhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH--------------------------
Confidence            9999 99887753    3  6777777     9999999999999998865321                          


Q ss_pred             HHHHHHHHhcCCHHHHHHHH
Q psy1863         359 INKAVTFLRMNDVSQAVDVL  378 (425)
Q Consensus       359 ~~la~~~~~~g~~~~A~~~~  378 (425)
                        .+.++...|++++|++.+
T Consensus       252 --~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          252 --HRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             --HHHHHHHHHHHHHC----
T ss_pred             --HHHHHHHHHHHHhhHHHH
Confidence              234566777788877766

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.86  E-value=2.3e-20  Score=166.06  Aligned_cols=169  Identities=15%  Similarity=0.145  Sum_probs=154.0

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHH
Q psy1863         134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMT---SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN---SAAFV  204 (425)
Q Consensus       134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~  204 (425)
                      ..+.++.+|..++..|++++|+..|++++   |.+   +.+++.+|.+++..|++++|+..|+++++.+|++   +.+++
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            45667899999999999999999999998   666   8999999999999999999999999999998854   57899


Q ss_pred             HHHHHHHH--------hcCHHHHHHHHHHHHhcCcCcHHHH-----------------HHHHHHHHHcCCHHHHHHHHHH
Q psy1863         205 NLGNCAMA--------REDYVKGKELYVHALDNDATCIEAL-----------------YNLGLAHKHLNEYSDSLECFHK  259 (425)
Q Consensus       205 ~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~-----------------~~la~~~~~~g~~~~A~~~~~~  259 (425)
                      .+|.++..        .|++++|+..|++++..+|+++.+.                 +.+|.+|...|++++|+..|++
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  173 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA  173 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            99999999        9999999999999999999875555                 8889999999999999999999


Q ss_pred             HHhhCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhcCcchH
Q psy1863         260 LQAIVPS---MPEVLYQIASLYEIT----------GDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       260 al~~~p~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      +++..|+   .+.+++.+|.+|..+          |++++|+..|++ +++.+|+++
T Consensus       174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~-~~~~~p~~~  229 (261)
T 3qky_A          174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYER-LLQIFPDSP  229 (261)
T ss_dssp             HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH-HHHHCTTCT
T ss_pred             HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHH-HHHHCCCCh
Confidence            9999998   457899999999977          899999999999 999999887

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.85  E-value=1.4e-18  Score=155.34  Aligned_cols=221  Identities=14%  Similarity=0.118  Sum_probs=185.6

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCcCcHHHHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMA----REDYVKGKELYVHALDNDATCIEALY  238 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~  238 (425)
                      |.++.+++.+|.++...|++++|+.+|+++++  |+++.+++.+|.++..    .+++++|+.+|+++++..  ++.+++
T Consensus         3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~   78 (273)
T 1ouv_A            3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCH   78 (273)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence            56788999999999999999999999999998  8889999999999999    999999999999999985  799999


Q ss_pred             HHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCcchHHHHHHHh
Q psy1863         239 NLGLAHKH----LNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI----TGDVEQASDVNENLLLEAVRNDALSQLHRE  310 (425)
Q Consensus       239 ~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~a~~~~p~~~~~~l~~~  310 (425)
                      ++|.+|..    .+++++|+.+|++++...  ++.+++.+|.+|..    .+++++|+.+|++ +++..+...+..++.+
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~-a~~~~~~~a~~~lg~~  155 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTK-ACDLNDGDGCTILGSL  155 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHH-HHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHH-HHhcCcHHHHHHHHHH
Confidence            99999999    999999999999999874  89999999999999    9999999999999 9998765556666655


Q ss_pred             ---------hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHh----cCCHHHHHHH
Q psy1863         311 ---------MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLR----MNDVSQAVDV  377 (425)
Q Consensus       311 ---------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~  377 (425)
                               ++++|+.+|+++++..+                           ...+..+|.+|..    .+++++|+.+
T Consensus       156 ~~~~~~~~~~~~~A~~~~~~a~~~~~---------------------------~~a~~~lg~~~~~g~~~~~~~~~A~~~  208 (273)
T 1ouv_A          156 YDAGRGTPKDLKKALASYDKACDLKD---------------------------SPGCFNAGNMYHHGEGATKNFKEALAR  208 (273)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHTTC---------------------------HHHHHHHHHHHHHTCSSCCCHHHHHHH
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHHCCC---------------------------HHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence                     78999999999886532                           2456678899999    9999999999


Q ss_pred             HHHHHhhccCCccchhHHHHHhhhccC----cCCCCcHHHHHHhHhHHh
Q psy1863         378 LKSCDEMTSSAATNLSFIYFLVSSEFQ----YLPTSEVPIYLENLLTVL  422 (425)
Q Consensus       378 ~~~~~~~~~~~~~~l~~~~~l~~~~~~----~~~~~ea~~~~~~~l~~~  422 (425)
                      |+++.+..+  +   ...+.+......    .....+|..+++++++.-
T Consensus       209 ~~~a~~~~~--~---~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          209 YSKACELEN--G---GGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHHHHHTTC--H---HHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHHHhCCC--H---HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            999976543  1   122222121222    347889999999988764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.85  E-value=1.9e-20  Score=170.19  Aligned_cols=240  Identities=15%  Similarity=0.156  Sum_probs=183.0

Q ss_pred             chhhHHHHHHHHHHHHcCCHHHHHHHHHhcc-----------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Q psy1863         132 SLAQDLEINKAVTFLRMNDVSQAVDVLKSCD-----------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA-----  195 (425)
Q Consensus       132 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----  195 (425)
                      +.....+..+|..+...|++++|+.++++++           +..+.++..+|.++...|++++|+.++++++..     
T Consensus        24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  103 (311)
T 3nf1_A           24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL  103 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence            4456778899999999999999999999987           334678899999999999999999999999987     


Q ss_pred             ---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Q psy1863         196 ---DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND--------ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI-  263 (425)
Q Consensus       196 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-  263 (425)
                         .|....++..+|.++...|++++|+.+|++++...        |....++.++|.++...|++++|+.++++++.. 
T Consensus       104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  183 (311)
T 3nf1_A          104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY  183 (311)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence               35567889999999999999999999999999874        566788999999999999999999999999998 


Q ss_pred             -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH-----------HHHHHHhhHHHHHHHHHHHHhh
Q psy1863         264 -------VPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA-----------LSQLHREMKHEAEKCILTSAKL  325 (425)
Q Consensus       264 -------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~-----------~~~l~~~~~~~A~~~~~~a~~~  325 (425)
                             .|....++..+|.++...|++++|+.++++ +++..|...           +...+..  ......+......
T Consensus       184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  260 (311)
T 3nf1_A          184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKE-ILTRAHEREFGSVDDENKPIWMHAEER--EECKGKQKDGTSF  260 (311)
T ss_dssp             HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHHHHHHHC------CCHHHHHHHH--HHC-------CCS
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHhcCCCCCcchHHHHHHHHHH--HHhcCchhhHHHH
Confidence                   666678899999999999999999999999 987655422           1111111  0000000000000


Q ss_pred             cCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q psy1863         326 IAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTS  386 (425)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  386 (425)
                      ..         ...++...   ....+....++..+|.+|...|++++|+..++++.++.+
T Consensus       261 ~~---------a~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~  309 (311)
T 3nf1_A          261 GE---------YGGWYKAC---KVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK  309 (311)
T ss_dssp             CC---------CC------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             HH---------HHHHHhhc---CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            00         00000000   012233456788899999999999999999999976654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.85  E-value=2.5e-20  Score=168.66  Aligned_cols=195  Identities=16%  Similarity=0.030  Sum_probs=162.4

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----
Q psy1863         134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN-----  199 (425)
Q Consensus       134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----  199 (425)
                      +.+.+...|.++...|++++|+..|.+++         +..+.++.++|.+|..+|++++|+.+|++++.+.|..     
T Consensus        36 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~  115 (292)
T 1qqe_A           36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR  115 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            34455666889999999999999999998         1236789999999999999999999999999987654     


Q ss_pred             -HHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCcCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--
Q psy1863         200 -SAAFVNLGNCAMAR-EDYVKGKELYVHALDNDATC------IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPE--  269 (425)
Q Consensus       200 -~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--  269 (425)
                       ..++.++|.+|... |++++|+.+|++++.+.|..      ..++.++|.++..+|++++|+.+|++++...|++..  
T Consensus       116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  195 (292)
T 1qqe_A          116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ  195 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCccc
Confidence             46799999999996 99999999999999997753      567899999999999999999999999999987643  


Q ss_pred             -----HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH-------HHHHHHh-------hHHHHHHHHHHHHhhcCCc
Q psy1863         270 -----VLYQIASLYEITGDVEQASDVNENLLLEAVRNDA-------LSQLHRE-------MKHEAEKCILTSAKLIAPS  329 (425)
Q Consensus       270 -----~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~-------~~~l~~~-------~~~~A~~~~~~a~~~~~~~  329 (425)
                           ++.++|.++..+|++++|+.+|++ +++++|+..       +..++..       ++.+|+..|.+++.++|..
T Consensus       196 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~  273 (292)
T 1qqe_A          196 WSLKDYFLKKGLCQLAATDAVAAARTLQE-GQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK  273 (292)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHG-GGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence                 678999999999999999999999 999999865       2233322       5778888888777766644

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.85  E-value=6.7e-20  Score=157.18  Aligned_cols=165  Identities=10%  Similarity=0.053  Sum_probs=146.5

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH----------------HHHHHHHhcCHHHHHHHHHHHHh
Q psy1863         165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVN----------------LGNCAMAREDYVKGKELYVHALD  228 (425)
Q Consensus       165 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~  228 (425)
                      .+..+...|..++..|++++|+..|++++..+|+++.+++.                +|.++...|++++|+..|+++++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            46778899999999999999999999999999999999999                99999999999999999999999


Q ss_pred             cCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhcCcchH-HH
Q psy1863         229 NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGD--VEQASDVNENLLLEAVRNDA-LS  305 (425)
Q Consensus       229 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~~a~~~~p~~~-~~  305 (425)
                      ++|+++.++.++|.++...|++++|+.+|+++++++|+++.+++++|.+|...|+  ...+...+.+ ++...|... +.
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~  161 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKK-LSSPTKMQYARY  161 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCCCchhHHHH
Confidence            9999999999999999999999999999999999999999999999999987764  4567778888 765555443 55


Q ss_pred             HHHHh-----hHHHHHHHHHHHHhhcCCch
Q psy1863         306 QLHRE-----MKHEAEKCILTSAKLIAPSI  330 (425)
Q Consensus       306 ~l~~~-----~~~~A~~~~~~a~~~~~~~~  330 (425)
                      .+|..     ++++|+.+|++++++.|+..
T Consensus       162 ~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  191 (208)
T 3urz_A          162 RDGLSKLFTTRYEKARNSLQKVILRFPSTE  191 (208)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence            55554     89999999999999999753

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.85  E-value=2.6e-21  Score=156.88  Aligned_cols=132  Identities=13%  Similarity=0.132  Sum_probs=123.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCH
Q psy1863         171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEY  250 (425)
Q Consensus       171 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  250 (425)
                      .||.++...|++++|+..+++++..+|.++..++.+|.+|+..|++++|+.+|+++++++|+++.+|.++|.+|...|++
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhcCcchH
Q psy1863         251 SDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDV-NENLLLEAVRNDA  303 (425)
Q Consensus       251 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~~a~~~~p~~~  303 (425)
                      ++|+.+|+++++++|+++.+++++|.++...|++++|... +++ +++++|+++
T Consensus        82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~-al~l~P~~~  134 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVER-AAKLFPGSP  134 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHH-HHHHSTTCH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH-HHHhCcCCH
Confidence            9999999999999999999999999999999999887765 589 999999998

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.84  E-value=1.9e-19  Score=160.05  Aligned_cols=169  Identities=17%  Similarity=0.152  Sum_probs=154.7

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC---cHHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN---SAAFVNLGNCAMAREDYVKGKELYVHALDNDAT---CIEA  236 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~  236 (425)
                      +..+..++.+|..++..|++++|+..|+++++.+|++   +.+++.+|.++...|++++|+..|+++++.+|+   .+.+
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            7788999999999999999999999999999999999   899999999999999999999999999999874   4778


Q ss_pred             HHHHHHHHHH--------cCCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHH
Q psy1863         237 LYNLGLAHKH--------LNEYSDSLECFHKLQAIVPSMPEVL-----------------YQIASLYEITGDVEQASDVN  291 (425)
Q Consensus       237 ~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~~A~~~~  291 (425)
                      ++.+|.++..        .|++++|+..|++++...|+++.+.                 +.+|.+|...|++++|+..|
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  171 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY  171 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            9999999999        9999999999999999999887665                 88999999999999999999


Q ss_pred             HHHHHhcCcchH-----HHHHHHh---------------hHHHHHHHHHHHHhhcCCchhh
Q psy1863         292 ENLLLEAVRNDA-----LSQLHRE---------------MKHEAEKCILTSAKLIAPSIED  332 (425)
Q Consensus       292 ~~~a~~~~p~~~-----~~~l~~~---------------~~~~A~~~~~~a~~~~~~~~~~  332 (425)
                      ++ +++..|+++     +..+|.+               ++++|+..|+++++..|++...
T Consensus       172 ~~-~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  231 (261)
T 3qky_A          172 EA-VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL  231 (261)
T ss_dssp             HH-HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred             HH-HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence            99 999999843     5566554               4588999999999999987643

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.84  E-value=3.5e-19  Score=167.55  Aligned_cols=190  Identities=13%  Similarity=0.100  Sum_probs=135.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcc----------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------H
Q psy1863         137 LEINKAVTFLRMNDVSQAVDVLKSCD----------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN------S  200 (425)
Q Consensus       137 ~~~~~a~~~~~~g~~~~A~~~~~~~~----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~  200 (425)
                      .+..+|.++...|++++|+..+.+++          +..+.++..+|.+|...|++++|+.+|+++++..|..      .
T Consensus       145 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  224 (383)
T 3ulq_A          145 FFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMG  224 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHH
Confidence            34667788888888888888888877          1234577788888888888888888888888765432      2


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHh-----cC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CCHH
Q psy1863         201 AAFVNLGNCAMAREDYVKGKELYVHALD-----ND-ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP-----SMPE  269 (425)
Q Consensus       201 ~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~  269 (425)
                      .++.++|.+|..+|++++|+.+|++++.     .+ |..+.++.++|.++..+|++++|+.++++++.+.+     ....
T Consensus       225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  304 (383)
T 3ulq_A          225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS  304 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            4677888888888888888888888887     45 66677888888888888888888888888877632     2233


Q ss_pred             HHHHHHHHHHHcCC---HHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCC
Q psy1863         270 VLYQIASLYEITGD---VEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAP  328 (425)
Q Consensus       270 ~~~~la~~~~~~g~---~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~  328 (425)
                      .+..+|.++...|+   +++|+..+++ . ...|...  +..+|.+     ++++|..++++++++...
T Consensus       305 ~~~~l~~~~~~~~~~~~~~~al~~~~~-~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~  371 (383)
T 3ulq_A          305 EFEFLKSLYLSGPDEEAIQGFFDFLES-K-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL  371 (383)
T ss_dssp             HHHHHHHHHTSSCCHHHHHHHHHHHHH-T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHH-C-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            35667778888887   6777777776 4 2222222  5556666     778888888888776544

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.83  E-value=1.5e-19  Score=141.60  Aligned_cols=116  Identities=16%  Similarity=0.197  Sum_probs=102.9

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL  242 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  242 (425)
                      |..+.++..+|..++..|+|++|+..|+++++.+|.++.++.++|.++..+|++++|+..|+++++++|+++.+++++|.
T Consensus        10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~   89 (126)
T 4gco_A           10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAA   89 (126)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence            77788888889999999999999999999999999999999999999999999999999999999999988889999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy1863         243 AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLY  278 (425)
Q Consensus       243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  278 (425)
                      ++..+|++++|+..|+++++++|++..++..++.|+
T Consensus        90 ~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           90 CLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            999999999999999999999998888888888763

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.83  E-value=3.9e-19  Score=154.38  Aligned_cols=167  Identities=12%  Similarity=0.107  Sum_probs=149.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHH
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMT---SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSA---AFVN  205 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~  205 (425)
                      .+.++.+|..++..|++++|+..|++++   |..   +.+++.+|.+++..|++++|+..|+++++.+|+++.   +++.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            3456889999999999999999999998   443   578999999999999999999999999999999864   7899


Q ss_pred             HHHHHHH------------------hcCHHHHHHHHHHHHhcCcCcHHHH-----------------HHHHHHHHHcCCH
Q psy1863         206 LGNCAMA------------------REDYVKGKELYVHALDNDATCIEAL-----------------YNLGLAHKHLNEY  250 (425)
Q Consensus       206 la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~-----------------~~la~~~~~~g~~  250 (425)
                      +|.++..                  .|++++|+..|+++++.+|+++.++                 ..+|.+|...|++
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~  163 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW  163 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence            9999876                  5799999999999999999886543                 5789999999999


Q ss_pred             HHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcch
Q psy1863         251 SDSLECFHKLQAIVPSMP---EVLYQIASLYEITGDVEQASDVNENLLLEAVRND  302 (425)
Q Consensus       251 ~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~  302 (425)
                      ++|+..|+++++..|+++   .+++.+|.++..+|++++|+..++. +....|++
T Consensus       164 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~-l~~~~~~~  217 (225)
T 2yhc_A          164 VAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKI-IAANSSNT  217 (225)
T ss_dssp             HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHCCSCC
T ss_pred             HHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHH-HHhhCCCc
Confidence            999999999999999876   6799999999999999999999999 88887765

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.83  E-value=7.4e-19  Score=146.78  Aligned_cols=166  Identities=16%  Similarity=0.161  Sum_probs=158.1

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q psy1863         165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAH  244 (425)
Q Consensus       165 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~  244 (425)
                      ...++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+++++++..|.++.++..+|.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   86 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHH
Q psy1863         245 KHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEK  317 (425)
Q Consensus       245 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~  317 (425)
                      ...|++++|+..+++++...|.++.++..+|.++...|++++|+.++++ +++..|+++  +..++.+     ++++|..
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  165 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKI-ALGLRPNEGKVHRAIAFSYEQMGRHEEALP  165 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHH-HHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999999999999999999999999999999999999999 999999988  7777776     8999999


Q ss_pred             HHHHHHhhcCCchh
Q psy1863         318 CILTSAKLIAPSIE  331 (425)
Q Consensus       318 ~~~~a~~~~~~~~~  331 (425)
                      +++++++..|++..
T Consensus       166 ~~~~~~~~~~~~~~  179 (186)
T 3as5_A          166 HFKKANELDEGASV  179 (186)
T ss_dssp             HHHHHHHHHHCCCG
T ss_pred             HHHHHHHcCCCchh
Confidence            99999999887654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.83  E-value=5.8e-19  Score=159.69  Aligned_cols=169  Identities=12%  Similarity=0.108  Sum_probs=142.0

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---c------chHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC----
Q psy1863         134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---E------MTSSAATNLSFIYFLQ-GEVEQAEKMAEEACTADTYN----  199 (425)
Q Consensus       134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~------~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~----  199 (425)
                      ....+.++|.++...|++++|+.+|++++   +      ..+.++.++|.+|... |++++|+.+|++++++.|..    
T Consensus        76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~  155 (292)
T 1qqe_A           76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA  155 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChH
Confidence            35566899999999999999999999998   2      1256899999999996 99999999999999998754    


Q ss_pred             --HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy1863         200 --SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIE-------ALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEV  270 (425)
Q Consensus       200 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  270 (425)
                        ..++.++|.++..+|++++|+.+|++++...|++..       ++.++|.++..+|++++|+.+|++++.++|+....
T Consensus       156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  235 (292)
T 1qqe_A          156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence              467899999999999999999999999999887543       68899999999999999999999999999976653


Q ss_pred             -----HHHHHHHHH--HcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         271 -----LYQIASLYE--ITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       271 -----~~~la~~~~--~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                           +..++..+.  ..+++++|+..|++ ++.++|...
T Consensus       236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~-~~~l~~~~~  274 (292)
T 1qqe_A          236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDN-FMRLDKWKI  274 (292)
T ss_dssp             --HHHHHHHHHHHHTTCTTTHHHHHHHHTT-SSCCCHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhcc-CCccHHHHH
Confidence                 455666664  45789999999999 999888776

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.83  E-value=2.3e-17  Score=160.44  Aligned_cols=292  Identities=12%  Similarity=0.054  Sum_probs=213.8

Q ss_pred             hhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHH----cCCHHHHHHHHHhcc-cchHHHHHHHHHHHHH----cCCH
Q psy1863         112 DNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLR----MNDVSQAVDVLKSCD-EMTSSAATNLSFIYFL----QGEV  182 (425)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~lg~~~~~----~g~~  182 (425)
                      .++..+..|+...... .    .....+.+|.+|..    .+++++|+.+|+++. ..++.+++.+|.+|..    .+++
T Consensus        93 ~~~~~A~~~~~~a~~~-~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~  167 (490)
T 2xm6_A           93 QDYAQAVIWYKKAALK-G----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDY  167 (490)
T ss_dssp             CCHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CCHHHHHHHHHHHHHC-C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence            3555566666665543 1    24556778888888    788888888888888 7778888888888887    7888


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH----cCCHHHHH
Q psy1863         183 EQAEKMAEEACTADTYNSAAFVNLGNCAMA----REDYVKGKELYVHALDNDATCIEALYNLGLAHKH----LNEYSDSL  254 (425)
Q Consensus       183 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~  254 (425)
                      ++|+.+|+++++.  .++.+++.+|.+|..    .+++++|+.+|+++++.  .++.+++.+|.+|..    .+++++|+
T Consensus       168 ~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~  243 (490)
T 2xm6_A          168 VMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSR  243 (490)
T ss_dssp             HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             HHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence            8888888888875  578888888888888    78889999999888875  467888888888887    78899999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCcchHHHHHHHh----------hHHHHHHHHH
Q psy1863         255 ECFHKLQAIVPSMPEVLYQIASLYEI----TGDVEQASDVNENLLLEAVRNDALSQLHRE----------MKHEAEKCIL  320 (425)
Q Consensus       255 ~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~a~~~~p~~~~~~l~~~----------~~~~A~~~~~  320 (425)
                      .+|++++..  .++.+++.+|.+|..    .+++++|+.+|++ +.+..+.+.+..++.+          ++++|+.+|+
T Consensus       244 ~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~-a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~  320 (490)
T 2xm6_A          244 VLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRK-SAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYT  320 (490)
T ss_dssp             HHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHH-HHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred             HHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence            999888765  567888899999888    8899999999999 8876544445555554          7888999999


Q ss_pred             HHHhhcCCchhhHhhchHHHHHH---HhH-------HhhchhhhcHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcc
Q psy1863         321 TSAKLIAPSIEDNFSNGYNWCVQ---SIR-------NSAHSSLAQDLEINKAVTFLR----MNDVSQAVDVLKSCDEMTS  386 (425)
Q Consensus       321 ~a~~~~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~  386 (425)
                      ++.+..+  ......+|..+...   ...       ..+...-.+..+..+|.+|..    .+++++|+.+|+++.... 
T Consensus       321 ~a~~~~~--~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-  397 (490)
T 2xm6_A          321 KSAEQGD--ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-  397 (490)
T ss_dssp             HHHHTTC--HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred             HHHhcCC--HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-
Confidence            9887643  34445555333221   011       122222356778889999998    899999999999986532 


Q ss_pred             CCccchhHHHHHhhhccC----cCCCCcHHHHHHhHhHHh
Q psy1863         387 SAATNLSFIYFLVSSEFQ----YLPTSEVPIYLENLLTVL  422 (425)
Q Consensus       387 ~~~~~l~~~~~l~~~~~~----~~~~~ea~~~~~~~l~~~  422 (425)
                          +....+.+..-...    .....+|..+++++++.-
T Consensus       398 ----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          398 ----LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             ----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             ----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence                22333333333333    567788888888888764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.82  E-value=2.1e-18  Score=157.34  Aligned_cols=197  Identities=10%  Similarity=0.038  Sum_probs=174.3

Q ss_pred             hhHHHHHHHHHHH-------HcCCH-------HHHHHHHHhcc----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1863         134 AQDLEINKAVTFL-------RMNDV-------SQAVDVLKSCD----EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA  195 (425)
Q Consensus       134 ~~~~~~~~a~~~~-------~~g~~-------~~A~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  195 (425)
                      ..++++..|..+.       ..|++       ++|+..|++++    |..+.+|..+|.++...|++++|...|+++++.
T Consensus        49 ~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  128 (308)
T 2ond_A           49 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI  128 (308)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence            3556677777665       45885       99999999998    778899999999999999999999999999999


Q ss_pred             CCCCHH-HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy1863         196 DTYNSA-AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKH-LNEYSDSLECFHKLQAIVPSMPEVLYQ  273 (425)
Q Consensus       196 ~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~  273 (425)
                      .|.++. +|.++|.++...|++++|+..|+++++..|.+..++...+.+... .|++++|+.+|+++++.+|+++.+|..
T Consensus       129 ~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  208 (308)
T 2ond_A          129 EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLA  208 (308)
T ss_dssp             SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            999987 999999999999999999999999999999998888877766544 799999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhc---Ccc-hH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchh
Q psy1863         274 IASLYEITGDVEQASDVNENLLLEA---VRN-DA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIE  331 (425)
Q Consensus       274 la~~~~~~g~~~~A~~~~~~~a~~~---~p~-~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~  331 (425)
                      +|.++...|++++|+..|++ ++..   .|+ ..  |..++.+     +.+.|...+.++++..|++..
T Consensus       209 ~~~~~~~~g~~~~A~~~~~~-al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~  276 (308)
T 2ond_A          209 YIDYLSHLNEDNNTRVLFER-VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE  276 (308)
T ss_dssp             HHHHHHTTCCHHHHHHHHHH-HHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred             HHHHHHHCCCHHHHHHHHHH-HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccc
Confidence            99999999999999999999 9995   554 33  6655555     889999999999999997653

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.82  E-value=7.2e-18  Score=165.62  Aligned_cols=212  Identities=11%  Similarity=0.036  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHH-------hcCHH-------HHHHHHHHHHh-cCcCcHHHHHHHHHHHHHcC
Q psy1863         184 QAEKMAEEACTADTYNSAAFVNLGNCAMA-------REDYV-------KGKELYVHALD-NDATCIEALYNLGLAHKHLN  248 (425)
Q Consensus       184 ~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~~~~~~~~~~la~~~~~~g  248 (425)
                      .++..|++++..+|.++.+|+.+|..+..       .|+++       +|+..|+++++ ..|++..+|..+|.++...|
T Consensus       256 ~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g  335 (530)
T 2ooe_A          256 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM  335 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence            44455555555555555555555555543       45544       55555555554 45555555555555555555


Q ss_pred             CHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh------hHHHHHHHH
Q psy1863         249 EYSDSLECFHKLQAIVPSMP-EVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE------MKHEAEKCI  319 (425)
Q Consensus       249 ~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~------~~~~A~~~~  319 (425)
                      ++++|...|+++++..|.++ .+|..+|.++...|++++|+..|++ +++..|.+.  +...+.+      ++++|...|
T Consensus       336 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~  414 (530)
T 2ooe_A          336 KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK-AREDARTRHHVYVTAALMEYYCSKDKSVAFKIF  414 (530)
T ss_dssp             CHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHcCChhHHHHHH
Confidence            55555555555555555543 3555555555555555555555555 555544433  1111111      455555555


Q ss_pred             HHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchh-HH-HH
Q psy1863         320 LTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLS-FI-YF  397 (425)
Q Consensus       320 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~-~~-~~  397 (425)
                      +++++..|++.                         .+|..++.++...|++++|..+|+++....+..|.... .. .+
T Consensus       415 e~al~~~p~~~-------------------------~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~  469 (530)
T 2ooe_A          415 ELGLKKYGDIP-------------------------EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF  469 (530)
T ss_dssp             HHHHHHHTTCH-------------------------HHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHH
T ss_pred             HHHHHHCCCCH-------------------------HHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence            55555555443                         45555666666667777777777776555444443211 11 11


Q ss_pred             H-hhhccCcCCCCcHHHHHHhHhHHhh
Q psy1863         398 L-VSSEFQYLPTSEVPIYLENLLTVLQ  423 (425)
Q Consensus       398 l-~~~~~~~~~~~ea~~~~~~~l~~~~  423 (425)
                      + .-..+|  ....+..+..++++.+|
T Consensus       470 ~~~e~~~G--~~~~~~~~~~r~~~~~p  494 (530)
T 2ooe_A          470 LAFESNIG--DLASILKVEKRRFTAFR  494 (530)
T ss_dssp             HHHHHHSS--CHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHcC--CHHHHHHHHHHHHHHCc
Confidence            1 011223  44555556666655554

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.82  E-value=1e-18  Score=158.80  Aligned_cols=173  Identities=15%  Similarity=0.149  Sum_probs=110.9

Q ss_pred             HHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHH
Q psy1863          13 QEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMK   92 (425)
Q Consensus        13 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~   92 (425)
                      ..+..+...|..+...|++++|++.+++++++.+....       ...                                
T Consensus        25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-------~~~--------------------------------   65 (311)
T 3nf1_A           25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG-------HDH--------------------------------   65 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC-------SSS--------------------------------
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcC-------CCC--------------------------------
Confidence            45677899999999999999999999998876521110       000                                


Q ss_pred             HHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc----------
Q psy1863          93 HEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD----------  162 (425)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~----------  162 (425)
                                                             +.....+..+|.++...|++++|+.++++++          
T Consensus        66 ---------------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           66 ---------------------------------------PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             ---------------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             ---------------------------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence                                                   0011222455666666666666666666665          


Q ss_pred             -cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----
Q psy1863         163 -EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD--------TYNSAAFVNLGNCAMAREDYVKGKELYVHALDN----  229 (425)
Q Consensus       163 -~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----  229 (425)
                       +....++..+|.++...|++++|+.+++++++..        |....++..+|.++...|++++|+.+|++++..    
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  186 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK  186 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence             2234556666666666666666666666666553        334455666666666666666666666666665    


Q ss_pred             ----CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy1863         230 ----DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI  263 (425)
Q Consensus       230 ----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  263 (425)
                          .|....++..+|.++...|++++|+.++++++..
T Consensus       187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR  224 (311)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                4555566666666666666666666666666653

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.82  E-value=6.2e-18  Score=162.45  Aligned_cols=312  Identities=12%  Similarity=0.048  Sum_probs=156.8

Q ss_pred             HHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhc---chhhcccchhHHHHHHHHHHH
Q psy1863          19 IDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKK---NARAVRNDALSQLHREMKHEA   95 (425)
Q Consensus        19 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~d~l~~~~~~~~~~~   95 (425)
                      ...|..+..+|++++|++.++++.+          +.......+++..|...|...   .....+...+..     .+.+
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa~----------~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A   71 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLAE----------LGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRA   71 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH----------HTCCTGGGTCC---------------------------------C
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHH
Confidence            3457788999999999999988753          345677888999888777762   211112111111     0000


Q ss_pred             HHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcc-------------------------------hhhHHHHHHHHH
Q psy1863          96 EKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSS-------------------------------LAQDLEINKAVT  144 (425)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~a~~  144 (425)
                      ...+-............++..+..|+...+... .+.                               -.....+.+|.+
T Consensus        72 ~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~  150 (452)
T 3e4b_A           72 QARLGRLLAAKPGATEAEHHEAESLLKKAFANG-EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLL  150 (452)
T ss_dssp             HHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT-CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            000000000000011123333444443333321 100                               002233455555


Q ss_pred             HHHcCCH----HHHHHHHHhcccchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh----
Q psy1863         145 FLRMNDV----SQAVDVLKSCDEMTSSAATNLSFIYFLQG---EVEQAEKMAEEACTADTYNSAAFVNLGNCAMAR----  213 (425)
Q Consensus       145 ~~~~g~~----~~A~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----  213 (425)
                      +...+.+    +.+..+++.+...++.+++.+|.+|...|   ++++|+..|+++.+..|.....++++|.+|...    
T Consensus       151 y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~  230 (452)
T 3e4b_A          151 YRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGT  230 (452)
T ss_dssp             HHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSS
T ss_pred             HHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC
Confidence            5555533    22333333333444446666666666666   666666666666666666666666666666444    


Q ss_pred             cCHHHHHHHHHHHHhcCcCcHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-----CHH
Q psy1863         214 EDYVKGKELYVHALDNDATCIEALYNLGLA-H--KHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG-----DVE  285 (425)
Q Consensus       214 g~~~~A~~~~~~al~~~~~~~~~~~~la~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----~~~  285 (425)
                      +++++|+.+|+++.   |.++.+++++|.+ +  ...|++++|+.+|+++.+.  .++.+++++|.+|. .|     +++
T Consensus       231 ~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~  304 (452)
T 3e4b_A          231 PDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAK  304 (452)
T ss_dssp             CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred             CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHH
Confidence            46666666666655   5566666666665 3  3456666666666666543  35666666666665 34     666


Q ss_pred             HHHHHHHHHHHhcCcchH--HHHHHHh---------hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhh
Q psy1863         286 QASDVNENLLLEAVRNDA--LSQLHRE---------MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLA  354 (425)
Q Consensus       286 ~A~~~~~~~a~~~~p~~~--~~~l~~~---------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (425)
                      +|+.+|++ +.   |+++  ..+||.+         ++++|..+|+++.+..                           .
T Consensus       305 ~A~~~~~~-Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---------------------------~  353 (452)
T 3e4b_A          305 AAEAHFEK-AV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---------------------------Q  353 (452)
T ss_dssp             HHHHHHHT-TT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---------------------------C
T ss_pred             HHHHHHHH-Hh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---------------------------h
Confidence            66666666 55   4444  5555544         5556666666555422                           2


Q ss_pred             cHHHHHHHHHHHh----cCCHHHHHHHHHHHHh
Q psy1863         355 QDLEINKAVTFLR----MNDVSQAVDVLKSCDE  383 (425)
Q Consensus       355 ~~~~~~la~~~~~----~g~~~~A~~~~~~~~~  383 (425)
                      .....++|.+|..    ..++.+|+.+|+++..
T Consensus       354 ~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~  386 (452)
T 3e4b_A          354 NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA  386 (452)
T ss_dssp             TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence            3445566677664    4578888888888743

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.81  E-value=3.9e-19  Score=139.31  Aligned_cols=118  Identities=14%  Similarity=0.091  Sum_probs=110.7

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy1863         191 EACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEV  270 (425)
Q Consensus       191 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  270 (425)
                      ++..++|+.+..+.++|..++..|+|++|+.+|+++++++|.++.++.++|.++..+|++++|+..|+++++++|+++.+
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence            34568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHH
Q psy1863         271 LYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHR  309 (425)
Q Consensus       271 ~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~  309 (425)
                      ++++|.++..+|++++|+..|++ +++++|+++  +..++.
T Consensus        84 ~~~lg~~~~~~~~~~~A~~~~~~-al~l~P~~~~a~~~l~~  123 (126)
T 4gco_A           84 YIRKAACLVAMREWSKAQRAYED-ALQVDPSNEEAREGVRN  123 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHH-HHHHCcCCHHHHHHHHH
Confidence            99999999999999999999999 999999998  556654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.81  E-value=3e-19  Score=180.21  Aligned_cols=163  Identities=10%  Similarity=0.070  Sum_probs=158.2

Q ss_pred             HHcCCHHHHHHHHHhcc-----------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy1863         146 LRMNDVSQAVDVLKSCD-----------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE  214 (425)
Q Consensus       146 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  214 (425)
                      ...|++++|+..+++++           |.++.+++.+|.++...|++++|+..|+++++.+|+++.+++++|.++...|
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  481 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG  481 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence            78899999999999987           8889999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863         215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENL  294 (425)
Q Consensus       215 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  294 (425)
                      ++++|+..|+++++++|+++.++.++|.++..+|++++ +..|+++++++|+++.+++++|.++..+|++++|+..|++ 
T Consensus       482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~-  559 (681)
T 2pzi_A          482 DYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDE-  559 (681)
T ss_dssp             CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHT-
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHh-
Confidence            99999999999999999999999999999999999999 9999999999999999999999999999999999999999 


Q ss_pred             HHhcCcchH--HHHHHHh
Q psy1863         295 LLEAVRNDA--LSQLHRE  310 (425)
Q Consensus       295 a~~~~p~~~--~~~l~~~  310 (425)
                      +++++|++.  +.+++.+
T Consensus       560 al~l~P~~~~a~~~~~~~  577 (681)
T 2pzi_A          560 VPPTSRHFTTARLTSAVT  577 (681)
T ss_dssp             SCTTSTTHHHHHHHHHHH
T ss_pred             hcccCcccHHHHHHHHHH
Confidence            999999988  7777776

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.81  E-value=1.7e-19  Score=161.30  Aligned_cols=217  Identities=15%  Similarity=0.145  Sum_probs=165.7

Q ss_pred             HcCCHHHHHHHHHhcc-----------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHH
Q psy1863         147 RMNDVSQAVDVLKSCD-----------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA--------DTYNSAAFVNLG  207 (425)
Q Consensus       147 ~~g~~~~A~~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la  207 (425)
                      ..|++++|+.+|++++           |..+.++..+|.++...|++++|+.++++++..        .|....++..+|
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~   92 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA   92 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            4556666666666665           456788999999999999999999999999987        366678899999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhc--------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHH
Q psy1863         208 NCAMAREDYVKGKELYVHALDN--------DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI--------VPSMPEVL  271 (425)
Q Consensus       208 ~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~  271 (425)
                      .++...|++++|+.+|++++..        +|....++.++|.++...|++++|+.++++++..        .|....++
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  172 (283)
T 3edt_B           93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK  172 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            9999999999999999999988        4777889999999999999999999999999998        66677899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH-----------HHHHHHh----hHHHHHHHHHHHHhhcCCchhhHhhc
Q psy1863         272 YQIASLYEITGDVEQASDVNENLLLEAVRNDA-----------LSQLHRE----MKHEAEKCILTSAKLIAPSIEDNFSN  336 (425)
Q Consensus       272 ~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~-----------~~~l~~~----~~~~A~~~~~~a~~~~~~~~~~~~~~  336 (425)
                      ..+|.++...|++++|+.++++ +++..|...           +..++..    ........+..+..            
T Consensus       173 ~~la~~~~~~g~~~~A~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  239 (283)
T 3edt_B          173 NNLASCYLKQGKYQDAETLYKE-ILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGS------------  239 (283)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHH-HHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---------------------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHH-HHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHH------------
Confidence            9999999999999999999999 988744322           2222221    00000000000000            


Q ss_pred             hHHHHHHHhHH-hhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy1863         337 GYNWCVQSIRN-SAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDE  383 (425)
Q Consensus       337 ~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  383 (425)
                             .... ....+....++..+|.+|..+|++++|+..++++.+
T Consensus       240 -------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          240 -------WYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             ----------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             -------HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                   0000 011223346778899999999999999999999854

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.80  E-value=9.2e-20  Score=147.17  Aligned_cols=115  Identities=4%  Similarity=-0.014  Sum_probs=67.3

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy1863         188 MAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM  267 (425)
Q Consensus       188 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  267 (425)
                      .+++++.++|+++.+++.+|.++...|++++|+.+|++++.++|+++.+|.++|.++..+|++++|+.+|+++++++|++
T Consensus        24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~  103 (151)
T 3gyz_A           24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND  103 (151)
T ss_dssp             CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred             CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence            34445555555555555555555555555555555555555555555555555555555555555655555555555555


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         268 PEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       268 ~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      +.+++++|.+|..+|++++|+.+|++ ++++.|+.+
T Consensus       104 ~~~~~~lg~~~~~lg~~~eA~~~~~~-al~l~~~~~  138 (151)
T 3gyz_A          104 YTPVFHTGQCQLRLKAPLKAKECFEL-VIQHSNDEK  138 (151)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCCCHH
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCHH
Confidence            55555555555555666656555555 555555544

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.80  E-value=1.8e-18  Score=144.15  Aligned_cols=159  Identities=9%  Similarity=0.087  Sum_probs=144.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-H
Q psy1863         137 LEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM-A  212 (425)
Q Consensus       137 ~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~  212 (425)
                      ..+.+|..+...|++++|+..|++++   |.++.+++.+|.++...|++++|+..+++++..+| ++.....++.+.. .
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~   86 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQ   86 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHh
Confidence            34788999999999999999999999   99999999999999999999999999999999999 8877766665533 3


Q ss_pred             hcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Q psy1863         213 REDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM--PEVLYQIASLYEITGDVEQASDV  290 (425)
Q Consensus       213 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~  290 (425)
                      .++..+|+..++++++.+|+++.+++++|.++...|++++|+..|+++++.+|+.  +.++..+|.++..+|+.++|+..
T Consensus        87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~  166 (176)
T 2r5s_A           87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK  166 (176)
T ss_dssp             HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence            3455568999999999999999999999999999999999999999999999975  66999999999999999999999


Q ss_pred             HHHHHHh
Q psy1863         291 NENLLLE  297 (425)
Q Consensus       291 ~~~~a~~  297 (425)
                      |++ ++.
T Consensus       167 y~~-al~  172 (176)
T 2r5s_A          167 YRR-QLY  172 (176)
T ss_dssp             HHH-HHH
T ss_pred             HHH-HHH
Confidence            999 764

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.79  E-value=1.6e-18  Score=174.91  Aligned_cols=170  Identities=9%  Similarity=0.015  Sum_probs=158.5

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEAC--------TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCI  234 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  234 (425)
                      |.++.+++..|   ...|++++|+..+++++        +.+|++..+++.+|.++...|++++|+..|+++++.+|+++
T Consensus       391 p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~  467 (681)
T 2pzi_A          391 PTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW  467 (681)
T ss_dssp             TTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH
T ss_pred             CCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH
Confidence            66677777766   78999999999999999        89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh--
Q psy1863         235 EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE--  310 (425)
Q Consensus       235 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~--  310 (425)
                      .+++++|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++ +..|++ +++.+|++.  +.++|.+  
T Consensus       468 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~-al~~~P~~~~a~~~lg~~~~  545 (681)
T 2pzi_A          468 RLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQT-VWSTNDGVISAAFGLARARS  545 (681)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHH-HHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHH-HHHhCCchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999 999999 999999998  8888888  


Q ss_pred             ---hHHHHHHHHHHHHhhcCCchhhHhhch
Q psy1863         311 ---MKHEAEKCILTSAKLIAPSIEDNFSNG  337 (425)
Q Consensus       311 ---~~~~A~~~~~~a~~~~~~~~~~~~~~~  337 (425)
                         ++++|+..|+++++++|.+...+...|
T Consensus       546 ~~g~~~~A~~~~~~al~l~P~~~~a~~~~~  575 (681)
T 2pzi_A          546 AEGDRVGAVRTLDEVPPTSRHFTTARLTSA  575 (681)
T ss_dssp             HTTCHHHHHHHHHTSCTTSTTHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHhhcccCcccHHHHHHHH
Confidence               999999999999999998766555443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.79  E-value=5.5e-18  Score=147.09  Aligned_cols=167  Identities=16%  Similarity=0.133  Sum_probs=150.4

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcH---HHHH
Q psy1863         165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS---AAFVNLGNCAMAREDYVKGKELYVHALDNDATCI---EALY  238 (425)
Q Consensus       165 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~  238 (425)
                      .+.+++.+|..++..|++++|+..|+++++..|.++   .+++.+|.++...|++++|+..|+++++.+|+++   .+++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            567899999999999999999999999999998764   7899999999999999999999999999999875   4889


Q ss_pred             HHHHHHHH------------------cCCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHcCC
Q psy1863         239 NLGLAHKH------------------LNEYSDSLECFHKLQAIVPSMPEVL-----------------YQIASLYEITGD  283 (425)
Q Consensus       239 ~la~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~  283 (425)
                      .+|.++..                  .|++++|+..|+++++..|+++.++                 ..+|.+|...|+
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~  162 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA  162 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            99999886                  5799999999999999999887554                 578999999999


Q ss_pred             HHHHHHHHHHHHHhcCcchH-----HHHHHHh-----hHHHHHHHHHHHHhhcCCchhh
Q psy1863         284 VEQASDVNENLLLEAVRNDA-----LSQLHRE-----MKHEAEKCILTSAKLIAPSIED  332 (425)
Q Consensus       284 ~~~A~~~~~~~a~~~~p~~~-----~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~  332 (425)
                      +++|+..|++ +++..|+++     +..++.+     ++++|+..++.+....|++...
T Consensus       163 ~~~A~~~~~~-~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~  220 (225)
T 2yhc_A          163 WVAVVNRVEG-MLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH  220 (225)
T ss_dssp             HHHHHHHHHH-HHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred             HHHHHHHHHH-HHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence            9999999999 999999876     6667776     9999999999999888877653

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.79  E-value=3.8e-18  Score=152.55  Aligned_cols=129  Identities=16%  Similarity=0.185  Sum_probs=112.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc-----------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD-----------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA--------  195 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------  195 (425)
                      ..++..+|.++...|++++|+.++++++           +..+.++..+|.++...|++++|+.++++++..        
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  122 (283)
T 3edt_B           43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF  122 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence            4455788999999999999999998887           345678889999999999999999999999987        


Q ss_pred             CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy1863         196 DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN--------DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI  263 (425)
Q Consensus       196 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  263 (425)
                      +|....++.++|.++...|++++|+.+|++++..        .|....++.++|.++...|++++|+.++++++..
T Consensus       123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4666788999999999999999999999999988        6777888999999999999999999999999876

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.78  E-value=1.7e-18  Score=139.76  Aligned_cols=113  Identities=18%  Similarity=0.294  Sum_probs=107.8

Q ss_pred             HHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC
Q psy1863         156 DVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDAT  232 (425)
Q Consensus       156 ~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  232 (425)
                      ..+++++   |.++.+++.+|.+++..|++++|+..|++++..+|+++.+|+++|.++..+|++++|+.+|+++++++|+
T Consensus        23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~  102 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN  102 (151)
T ss_dssp             CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred             CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence            4455666   8999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy1863         233 CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMP  268 (425)
Q Consensus       233 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  268 (425)
                      ++.+++++|.+|..+|++++|+.+|++++++.|+.+
T Consensus       103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            999999999999999999999999999999999765

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.78  E-value=1.5e-17  Score=156.20  Aligned_cols=239  Identities=13%  Similarity=0.067  Sum_probs=176.5

Q ss_pred             HHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHHHHHHH
Q psy1863          19 IDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEAEKC   98 (425)
Q Consensus        19 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~   98 (425)
                      .-.|..+...|+|++|++.+++|+++.+.+...  +.......+++..|...|++.                   .+..+
T Consensus       105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~a~~~~~lg~~y~~~~~~~-------------------~A~~~  163 (378)
T 3q15_A          105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDD--IEKAEFHFKVAEAYYHMKQTH-------------------VSMYH  163 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH--HHHHHHHHHHHHHHHHTTCHH-------------------HHHHH
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCCh--HHHHHHHHHHHHHHHHcCCcH-------------------HHHHH
Confidence            346777889999999999999998865211000  011112233344444433322                   33333


Q ss_pred             HHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHH
Q psy1863          99 ILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAA  169 (425)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~  169 (425)
                      +..+..+.....                  .+.......+..+|.++...|++++|+..|++++         +..+.++
T Consensus       164 ~~~al~~~~~~~------------------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  225 (378)
T 3q15_A          164 ILQALDIYQNHP------------------LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISL  225 (378)
T ss_dssp             HHHHHHHHHTST------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhCC------------------CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            333322211000                  1122345567899999999999999999999998         2345788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----cCcHHHHHH
Q psy1863         170 TNLSFIYFLQGEVEQAEKMAEEACT-----ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND-----ATCIEALYN  239 (425)
Q Consensus       170 ~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~  239 (425)
                      .++|.+|..+|++++|+.++++++.     .+|..+.++.++|.++...|++++|+.++++++.+.     |.....+..
T Consensus       226 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  305 (378)
T 3q15_A          226 LNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLF  305 (378)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999999     778888999999999999999999999999999984     444566788


Q ss_pred             HHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy1863         240 LGLAHKHLNE---YSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEA  298 (425)
Q Consensus       240 la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~  298 (425)
                      ++.++...|+   +.+|+..+++. ...|....++..+|.+|...|++++|..+|++ +++.
T Consensus       306 l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~-al~~  365 (378)
T 3q15_A          306 LQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRK-VLKA  365 (378)
T ss_dssp             HHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHH
Confidence            8999999998   88888888762 22334556788999999999999999999999 8765

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.77  E-value=8.1e-18  Score=166.71  Aligned_cols=160  Identities=13%  Similarity=0.082  Sum_probs=139.5

Q ss_pred             cCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q psy1863         148 MNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYV  224 (425)
Q Consensus       148 ~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  224 (425)
                      .|++++|+..|++++   |.++.++..+|.++...|++++|+..|+++++.+|++..++.++|.++..+|++++|+.+|+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            478999999999998   88899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhcCcc
Q psy1863         225 HALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT---GDVEQASDVNENLLLEAVRN  301 (425)
Q Consensus       225 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~~a~~~~p~  301 (425)
                      ++++.+|+++.++.++|.++...|++++|+..|+++++.+|+++.++.++|.++..+   |++++|...+++ +++.+|+
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~-al~~~p~  160 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRA-AVAQGVG  160 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH-HHHHTCC
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHH-HHhcCCc
Confidence            999999999999999999999999999999999999999999999999999999999   999999999999 9999998


Q ss_pred             hH--HHHHH
Q psy1863         302 DA--LSQLH  308 (425)
Q Consensus       302 ~~--~~~l~  308 (425)
                      +.  +..++
T Consensus       161 ~~~~~~~l~  169 (568)
T 2vsy_A          161 AVEPFAFLS  169 (568)
T ss_dssp             CSCHHHHTT
T ss_pred             ccChHHHhC
Confidence            76  55555

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.77  E-value=1.1e-17  Score=150.75  Aligned_cols=163  Identities=9%  Similarity=0.048  Sum_probs=144.0

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy1863         134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCA  210 (425)
Q Consensus       134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (425)
                      ..+..+.+|..+...|++++|+..|++++   |.++.++..+|.++...|++++|+..+++++..+|+........+..+
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l  195 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL  195 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence            44566888999999999999999999988   888899999999999999999999999999999897777777777778


Q ss_pred             HHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHH
Q psy1863         211 MAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM--PEVLYQIASLYEITGDVEQAS  288 (425)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~  288 (425)
                      ...++.++|+..+++++..+|+++.+++++|.++...|++++|+..|.++++.+|++  ..++..++.++...|+.++|.
T Consensus       196 ~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~  275 (287)
T 3qou_A          196 LXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA  275 (287)
T ss_dssp             HHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred             HhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence            888888889999999999999999999999999999999999999999999999987  788999999999999999999


Q ss_pred             HHHHHHHHh
Q psy1863         289 DVNENLLLE  297 (425)
Q Consensus       289 ~~~~~~a~~  297 (425)
                      ..|++ ++.
T Consensus       276 ~~~r~-al~  283 (287)
T 3qou_A          276 SXYRR-QLY  283 (287)
T ss_dssp             HHHHH-HHH
T ss_pred             HHHHH-HHH
Confidence            99888 664

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.76  E-value=4.9e-16  Score=145.38  Aligned_cols=228  Identities=11%  Similarity=0.022  Sum_probs=171.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcc---c------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHH
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCD---E------MTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD--------TYNSA  201 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~---~------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~  201 (425)
                      ..+|.++...|++++|+..+.+++   +      ....++..+|.++...|++++|+.++++++...        |....
T Consensus        57 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~  136 (373)
T 1hz4_A           57 SVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEF  136 (373)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHH
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHH
Confidence            567888888999999999999887   1      123457789999999999999999999998764        33456


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHH--
Q psy1863         202 AFVNLGNCAMAREDYVKGKELYVHALDNDAT-----CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS--MPEVLY--  272 (425)
Q Consensus       202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~--  272 (425)
                      ++.++|.++...|++++|..++++++...|.     ...++.++|.++...|++++|...+++++...+.  .+..+.  
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~  216 (373)
T 1hz4_A          137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN  216 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence            6788999999999999999999999988664     3567888999999999999999999999876432  222221  


Q ss_pred             ---HHHHHHHHcCCHHHHHHHHHHHHHhcCcchH------HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchH
Q psy1863         273 ---QIASLYEITGDVEQASDVNENLLLEAVRNDA------LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGY  338 (425)
Q Consensus       273 ---~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~------~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~  338 (425)
                         .++.++...|++++|...+++ ++...|.++      +..++.+     ++++|...+++++...+.....      
T Consensus       217 ~~~~~~~~~~~~g~~~~A~~~~~~-a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~------  289 (373)
T 1hz4_A          217 ANKVRVIYWQMTGDKAAAANWLRH-TAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLM------  289 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHH-SCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH------
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHh-CCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcch------
Confidence               344557789999999999999 887766431      3445444     7888888888887664421100      


Q ss_pred             HHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q psy1863         339 NWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTS  386 (425)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  386 (425)
                                   .....++..+|.++...|++++|...++++....+
T Consensus       290 -------------~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~  324 (373)
T 1hz4_A          290 -------------SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  324 (373)
T ss_dssp             -------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             -------------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence                         11124566789999999999999999999865443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.76  E-value=5.5e-17  Score=151.84  Aligned_cols=268  Identities=13%  Similarity=0.009  Sum_probs=203.1

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cch-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----
Q psy1863         134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMT-----SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS-----  200 (425)
Q Consensus       134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----  200 (425)
                      ..++...+|.++...|++++|+..+++++   |..     ..++..+|.++...|++++|...+++++...|...     
T Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   92 (373)
T 1hz4_A           13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA   92 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            35566788999999999999999999987   222     24688999999999999999999999998765432     


Q ss_pred             -HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----
Q psy1863         201 -AAFVNLGNCAMAREDYVKGKELYVHALDND--------ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS-----  266 (425)
Q Consensus       201 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----  266 (425)
                       .++.++|.++...|++++|+.++++++...        |....++.++|.++...|++++|..++++++...|.     
T Consensus        93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  172 (373)
T 1hz4_A           93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ  172 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence             347889999999999999999999999874        334667889999999999999999999999998875     


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcc--h-H-HH-----HHHHh-----hHHHHHHHHHHHHhhcCCchhh
Q psy1863         267 MPEVLYQIASLYEITGDVEQASDVNENLLLEAVRN--D-A-LS-----QLHRE-----MKHEAEKCILTSAKLIAPSIED  332 (425)
Q Consensus       267 ~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~--~-~-~~-----~l~~~-----~~~~A~~~~~~a~~~~~~~~~~  332 (425)
                      ...++..+|.++...|++++|..++++ ++...+.  . . +.     ..+.+     ++++|...+.+++...|.... 
T Consensus       173 ~~~~~~~la~~~~~~g~~~~A~~~l~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-  250 (373)
T 1hz4_A          173 QLQCLAMLIQCSLARGDLDNARSQLNR-LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH-  250 (373)
T ss_dssp             GHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG-
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcch-
Confidence            245788999999999999999999999 8876322  2 1 11     12211     889999999988765543210 


Q ss_pred             HhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCc---cchhHHHHHhhhccCcCCCC
Q psy1863         333 NFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAA---TNLSFIYFLVSSEFQYLPTS  409 (425)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~l~~~~~l~~~~~~~~~~~  409 (425)
                       .                   ....+..++.++...|++++|+..++++....+..+   ........+...........
T Consensus       251 -~-------------------~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  310 (373)
T 1hz4_A          251 -F-------------------LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS  310 (373)
T ss_dssp             -G-------------------GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             -h-------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHH
Confidence             0                   012345688999999999999999999865544322   11112222222222334677


Q ss_pred             cHHHHHHhHhHHhh
Q psy1863         410 EVPIYLENLLTVLQ  423 (425)
Q Consensus       410 ea~~~~~~~l~~~~  423 (425)
                      +|..+++.++++.+
T Consensus       311 ~A~~~l~~al~~~~  324 (373)
T 1hz4_A          311 DAQRVLLDALKLAN  324 (373)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc
Confidence            88888888887654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.76  E-value=7.4e-17  Score=126.94  Aligned_cols=135  Identities=30%  Similarity=0.441  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH
Q psy1863         167 SAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKH  246 (425)
Q Consensus       167 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  246 (425)
                      .+++.+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+.++++++...|.++.++..+|.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcch
Q psy1863         247 LNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRND  302 (425)
Q Consensus       247 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~  302 (425)
                      .|++++|+..+++++...|.++.++..+|.++...|++++|..++++ ++..+|++
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-~~~~~~~~  136 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK-ALELDPRS  136 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH-HHHHSTTC
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHH-HHccCCCC
Confidence            99999999999999999999999999999999999999999999999 99888863

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.75  E-value=1.9e-16  Score=142.42  Aligned_cols=227  Identities=8%  Similarity=-0.040  Sum_probs=182.9

Q ss_pred             HHHcCCH-HHHHHHHHhcc---cchHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----HHh-
Q psy1863         145 FLRMNDV-SQAVDVLKSCD---EMTSSAATNLSFIYFLQG--EVEQAEKMAEEACTADTYNSAAFVNLGNCA----MAR-  213 (425)
Q Consensus       145 ~~~~g~~-~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~-  213 (425)
                      ....|.+ ++|+.++.+++   |.+..+|+..+.++...|  ++++++.+++.++..+|.+..+|+..+.++    ... 
T Consensus        42 ~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~  121 (306)
T 3dra_A           42 LMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNN  121 (306)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhcc
Confidence            3444544 68999999998   999999999999999999  999999999999999999999999999998    666 


Q ss_pred             --cCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC------
Q psy1863         214 --EDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYS--DSLECFHKLQAIVPSMPEVLYQIASLYEITGD------  283 (425)
Q Consensus       214 --g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------  283 (425)
                        +++++++.++.+++..+|.+..+|.+.+.+....|.++  ++++++.++++.+|.+..+|...+.+....|.      
T Consensus       122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~  201 (306)
T 3dra_A          122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNT  201 (306)
T ss_dssp             TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred             ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhh
Confidence              78999999999999999999999999999999999998  99999999999999999999999999988887      


Q ss_pred             HHHHHHHHHHHHHhcCcchH--HHHHHHh------hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhc
Q psy1863         284 VEQASDVNENLLLEAVRNDA--LSQLHRE------MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQ  355 (425)
Q Consensus       284 ~~~A~~~~~~~a~~~~p~~~--~~~l~~~------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (425)
                      ++++++++.+ ++..+|+|.  |..++.+      ..+....++.+++...                      ...+-..
T Consensus       202 ~~eEl~~~~~-aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~s~  258 (306)
T 3dra_A          202 IDEELNYVKD-KIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE----------------------KDQVTSS  258 (306)
T ss_dssp             HHHHHHHHHH-HHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG----------------------GTEESCH
T ss_pred             HHHHHHHHHH-HHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc----------------------CCCCCCH
Confidence            8999999999 999999988  6666554      1222333333333322                      0011223


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHh-hccCCccchhHHHH
Q psy1863         356 DLEINKAVTFLRMNDVSQAVDVLKSCDE-MTSSAATNLSFIYF  397 (425)
Q Consensus       356 ~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~  397 (425)
                      .++..++.+|.+.|+.++|+++|+.+.. ..   |.......+
T Consensus       259 ~al~~la~~~~~~~~~~~A~~~~~~l~~~~D---pir~~yW~~  298 (306)
T 3dra_A          259 FALETLAKIYTQQKKYNESRTVYDLLKSKYN---PIRSNFWDY  298 (306)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC---GGGHHHHHH
T ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHhccC---hHHHHHHHH
Confidence            4556688888899999999999999853 33   444444433

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.75  E-value=2.7e-16  Score=154.39  Aligned_cols=225  Identities=11%  Similarity=0.010  Sum_probs=193.4

Q ss_pred             HHHHHHHHhcc---cchHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHh-cCCCCHHHHHHHHHHHHHh
Q psy1863         152 SQAVDVLKSCD---EMTSSAATNLSFIYFL-------QGEVE-------QAEKMAEEACT-ADTYNSAAFVNLGNCAMAR  213 (425)
Q Consensus       152 ~~A~~~~~~~~---~~~~~~~~~lg~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~~~la~~~~~~  213 (425)
                      .+++..|++++   |.++.+|..+|..+..       .|+++       +|+..|+++++ ..|++..+|..+|..+...
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~  334 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  334 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            47888999999   9999999999999986       79987       99999999997 8999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCcCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCHHHHHHHH
Q psy1863         214 EDYVKGKELYVHALDNDATCI-EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASL-YEITGDVEQASDVN  291 (425)
Q Consensus       214 g~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~  291 (425)
                      |++++|...|+++++..|.++ .+|.++|.++.+.|++++|+..|+++++..|.....+...+.+ +...|++++|..+|
T Consensus       335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~  414 (530)
T 2ooe_A          335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF  414 (530)
T ss_dssp             TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHH
Confidence            999999999999999999885 6999999999999999999999999999999888887777665 45699999999999


Q ss_pred             HHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHH
Q psy1863         292 ENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVT  364 (425)
Q Consensus       292 ~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~  364 (425)
                      ++ +++..|+++  |..++.+     +.++|...|++++...|.+....                     ..+|...+..
T Consensus       415 e~-al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~---------------------~~lw~~~~~~  472 (530)
T 2ooe_A          415 EL-GLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS---------------------GEIWARFLAF  472 (530)
T ss_dssp             HH-HHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGC---------------------HHHHHHHHHH
T ss_pred             HH-HHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHH---------------------HHHHHHHHHH
Confidence            99 999999988  7777776     89999999999999876543210                     2345555666


Q ss_pred             HHhcCCHHHHHHHHHHHHhhccCCccchhHHHHH
Q psy1863         365 FLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFL  398 (425)
Q Consensus       365 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l  398 (425)
                      ....|+.+.+..+++++.+..|..+.......|.
T Consensus       473 e~~~G~~~~~~~~~~r~~~~~p~~~~~~~~~~~~  506 (530)
T 2ooe_A          473 ESNIGDLASILKVEKRRFTAFREEYEGKETALLV  506 (530)
T ss_dssp             HHHSSCHHHHHHHHHHHHHHTHHHHTTCHHHHHG
T ss_pred             HHHcCCHHHHHHHHHHHHHHCchhccCchHHHHH
Confidence            6778999999999999988887655554544554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.75  E-value=5.7e-17  Score=146.08  Aligned_cols=171  Identities=9%  Similarity=-0.021  Sum_probs=156.3

Q ss_pred             HHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC
Q psy1863         153 QAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDAT  232 (425)
Q Consensus       153 ~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  232 (425)
                      .-...+...+|..+..+..+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+
T Consensus       104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~  183 (287)
T 3qou_A          104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD  183 (287)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS
T ss_pred             HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc
Confidence            33444555558899999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcch--H--HHHHH
Q psy1863         233 CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRND--A--LSQLH  308 (425)
Q Consensus       233 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~--~--~~~l~  308 (425)
                      ........+..+...++.++|+..+++++..+|+++.+++++|.++...|++++|+..|.+ ++..+|++  .  +..++
T Consensus       184 ~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~-~l~~~p~~~~~~a~~~l~  262 (287)
T 3qou_A          184 TRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFG-HLRXDLTAADGQTRXTFQ  262 (287)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTGGGGHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHH-HHhcccccccchHHHHHH
Confidence            8888888888899999999999999999999999999999999999999999999999999 99999987  4  77777


Q ss_pred             Hh-----hHHHHHHHHHHHHh
Q psy1863         309 RE-----MKHEAEKCILTSAK  324 (425)
Q Consensus       309 ~~-----~~~~A~~~~~~a~~  324 (425)
                      .+     +.++|...|++++.
T Consensus       263 ~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          263 EILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCCCcHHHHHHHHHH
Confidence            76     67788888888765

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.75  E-value=6.1e-18  Score=136.49  Aligned_cols=117  Identities=10%  Similarity=0.066  Sum_probs=88.4

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy1863         186 EKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP  265 (425)
Q Consensus       186 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  265 (425)
                      -..|++++..+|++..+++.+|.++...|++++|+..|++++..+|+++.+|.++|.++...|++++|+.+|++++.++|
T Consensus         7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            34566777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         266 SMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       266 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      +++.+++++|.++..+|++++|+.+|++ ++++.|+++
T Consensus        87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~p~~~  123 (148)
T 2vgx_A           87 XEPRFPFHAAECLLQXGELAEAESGLFL-AQELIANXP  123 (148)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHTTCG
T ss_pred             CCchHHHHHHHHHHHcCCHHHHHHHHHH-HHHHCcCCC
Confidence            7777777777777777777777777777 777766655

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.74  E-value=1.5e-17  Score=138.48  Aligned_cols=157  Identities=13%  Similarity=0.036  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q psy1863         166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHK  245 (425)
Q Consensus       166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  245 (425)
                      ...+..+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+| ++..+..++.+..
T Consensus         6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~   84 (176)
T 2r5s_A            6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL   84 (176)
T ss_dssp             CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence            345788999999999999999999999999999999999999999999999999999999999999 8777666665533


Q ss_pred             -HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcch--H--HHHHHHh-----hHHHH
Q psy1863         246 -HLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRND--A--LSQLHRE-----MKHEA  315 (425)
Q Consensus       246 -~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~--~--~~~l~~~-----~~~~A  315 (425)
                       ..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|++ +++.+|+.  +  +..++.+     +.++|
T Consensus        85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~-~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A           85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWN-ILKVNLGAQDGEVKKTFMDILSALGQGNAI  163 (176)
T ss_dssp             HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred             HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHH-HHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence             333445689999999999999999999999999999999999999999 99999874  2  7777776     77889


Q ss_pred             HHHHHHHHh
Q psy1863         316 EKCILTSAK  324 (425)
Q Consensus       316 ~~~~~~a~~  324 (425)
                      ...|++++.
T Consensus       164 ~~~y~~al~  172 (176)
T 2r5s_A          164 ASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988875

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.73  E-value=8.7e-18  Score=154.95  Aligned_cols=149  Identities=19%  Similarity=0.224  Sum_probs=137.5

Q ss_pred             cCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHH
Q psy1863         148 MNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN---------------SAAFVNLGNC  209 (425)
Q Consensus       148 ~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~  209 (425)
                      .+++++|+..+++++   |..+.++..+|.+++..|++++|+..|++++.++|.+               ..++.++|.+
T Consensus       126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  205 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC  205 (336)
T ss_dssp             EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            456667777777766   7788999999999999999999999999999999999               6899999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH-H
Q psy1863         210 AMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA-S  288 (425)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~  288 (425)
                      +..+|++++|+.+|+++++++|+++.+++++|.++..+|++++|+.+|+++++++|++..++..++.++..+|++++| .
T Consensus       206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~  285 (336)
T 1p5q_A          206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK  285 (336)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999998 4


Q ss_pred             HHHHHHHHh
Q psy1863         289 DVNENLLLE  297 (425)
Q Consensus       289 ~~~~~~a~~  297 (425)
                      ..|++ ++.
T Consensus       286 ~~~~~-~~~  293 (336)
T 1p5q_A          286 KLYAN-MFE  293 (336)
T ss_dssp             HHHHH-HHH
T ss_pred             HHHHH-HHH
Confidence            56676 543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.73  E-value=1.8e-17  Score=133.69  Aligned_cols=117  Identities=19%  Similarity=0.237  Sum_probs=109.8

Q ss_pred             HHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC
Q psy1863         156 DVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDAT  232 (425)
Q Consensus       156 ~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  232 (425)
                      ..|++++   |.++.+++.+|.++...|++++|+..|++++..+|.++.+++++|.++...|++++|+.+|++++.++|+
T Consensus         8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   87 (148)
T 2vgx_A            8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX   87 (148)
T ss_dssp             CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            3456666   8889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy1863         233 CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLY  272 (425)
Q Consensus       233 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  272 (425)
                      ++.+++++|.++..+|++++|+.+|++++++.|+++....
T Consensus        88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  127 (148)
T 2vgx_A           88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE  127 (148)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence            9999999999999999999999999999999998776533

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.73  E-value=3.5e-16  Score=134.10  Aligned_cols=130  Identities=18%  Similarity=0.171  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHH
Q psy1863         138 EINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYV  217 (425)
Q Consensus       138 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  217 (425)
                      ++.+|..+...|++++|+..|+++++..+.+++.+|.++...|++++|+..|++++..+|.++.+++++|.++...|+++
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~   88 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD   88 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHH
Confidence            35667777777777777777777774466777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHhcCcCcH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy1863         218 KGKELYVHALDNDATCI----------------EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM  267 (425)
Q Consensus       218 ~A~~~~~~al~~~~~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  267 (425)
                      +|+..|+++++..|.+.                .+++++|.++...|++++|+..|+++++..|+.
T Consensus        89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            77777777777665544                677777777777777777777777777777654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.73  E-value=1.6e-16  Score=124.24  Aligned_cols=118  Identities=15%  Similarity=0.128  Sum_probs=105.3

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL  242 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  242 (425)
                      |..+..+..+|..++..|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++++|+++.+++++|.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHH
Q psy1863         243 AHKHLNEYSDSLECFHKLQAIV------PSMPEVLYQIASLYEI  280 (425)
Q Consensus       243 ~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~  280 (425)
                      ++..+|++++|+..|+++++++      |.+..++..++.+...
T Consensus        81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            9999999999999999999998      8888888888877654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.72  E-value=1.9e-16  Score=156.91  Aligned_cols=157  Identities=12%  Similarity=0.073  Sum_probs=130.2

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy1863         179 QGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFH  258 (425)
Q Consensus       179 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  258 (425)
                      .|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|+++.++.++|.++..+|++++|+.+|+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh--------hHHHHHHHHHHHHhhcCC
Q psy1863         259 KLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE--------MKHEAEKCILTSAKLIAP  328 (425)
Q Consensus       259 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~--------~~~~A~~~~~~a~~~~~~  328 (425)
                      ++++.+|+++.++.++|.++...|++++|+..|++ +++.+|+++  +..++.+        ++++|...++++++..|.
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~  160 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTR-AHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG  160 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence            99999999999999999999999999999999999 999999988  6667666        678999999999999998


Q ss_pred             chhhHhhc
Q psy1863         329 SIEDNFSN  336 (425)
Q Consensus       329 ~~~~~~~~  336 (425)
                      ....+..+
T Consensus       161 ~~~~~~~l  168 (568)
T 2vsy_A          161 AVEPFAFL  168 (568)
T ss_dssp             CSCHHHHT
T ss_pred             ccChHHHh
Confidence            87655444

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.72  E-value=3.8e-16  Score=134.08  Aligned_cols=164  Identities=14%  Similarity=0.099  Sum_probs=148.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc-cchHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD-EMTSSAATNLSFIYFLQG----EVEQAEKMAEEACTADTYNSAAFVNLGNC  209 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~lg~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~  209 (425)
                      .+..+.+|.++...+++++|+.+|+++. ..++.+++.+|.+|.. +    ++++|+.+|+++.+  +.++.+++++|.+
T Consensus        18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~   94 (212)
T 3rjv_A           18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARV   94 (212)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHH
Confidence            4556889999999999999999999999 8889999999999998 7    99999999999964  6789999999999


Q ss_pred             HHH----hcCHHHHHHHHHHHHhcCc--CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy1863         210 AMA----REDYVKGKELYVHALDNDA--TCIEALYNLGLAHKH----LNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE  279 (425)
Q Consensus       210 ~~~----~g~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  279 (425)
                      |..    .+++++|+.+|+++++..|  .++.+++++|.+|..    .+++++|+.+|+++... |.++.+++++|.+|.
T Consensus        95 y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~  173 (212)
T 3rjv_A           95 LVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQ  173 (212)
T ss_dssp             HTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred             HHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence            988    8899999999999999988  359999999999999    88999999999999998 678889999999998


Q ss_pred             Hc-C-----CHHHHHHHHHHHHHhcCcchH
Q psy1863         280 IT-G-----DVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       280 ~~-g-----~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      .. |     ++++|+.+|++ +.+......
T Consensus       174 ~g~gg~~~~d~~~A~~~~~~-A~~~g~~~A  202 (212)
T 3rjv_A          174 QGEKGFIEPNKQKALHWLNV-SCLEGFDTG  202 (212)
T ss_dssp             HCBTTTBCCCHHHHHHHHHH-HHHHTCHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHH-HHHcCCHHH
Confidence            74 3     89999999999 988765544

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.72  E-value=4e-15  Score=142.83  Aligned_cols=182  Identities=12%  Similarity=0.006  Sum_probs=160.8

Q ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHhcc---cchHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy1863         137 LEINKAVTFLRMN---DVSQAVDVLKSCD---EMTSSAATNLSFIYFLQ----GEVEQAEKMAEEACTADTYNSAAFVNL  206 (425)
Q Consensus       137 ~~~~~a~~~~~~g---~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l  206 (425)
                      .++.+|.++...|   ++++|+..|+++.   +..+..++++|.+|...    +++++|+.+|+++.   |+++.+++++
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L  254 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL  254 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence            6689999999999   9999999999998   66677779999999765    79999999999998   9999999999


Q ss_pred             HHH-H--HHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy1863         207 GNC-A--MAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLN-----EYSDSLECFHKLQAIVPSMPEVLYQIASLY  278 (425)
Q Consensus       207 a~~-~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~  278 (425)
                      |.+ +  ...+++++|+.+|+++.+.  .++.+++++|.+|. .|     ++++|+.+|+++.   |.++.+++++|.+|
T Consensus       255 g~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y  328 (452)
T 3e4b_A          255 AQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIY  328 (452)
T ss_dssp             HHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence            999 4  5789999999999999965  48999999999998 56     9999999999998   89999999999998


Q ss_pred             HH----cCCHHHHHHHHHHHHHhcCcchHHHHHHHh---------hHHHHHHHHHHHHhhcCC
Q psy1863         279 EI----TGDVEQASDVNENLLLEAVRNDALSQLHRE---------MKHEAEKCILTSAKLIAP  328 (425)
Q Consensus       279 ~~----~g~~~~A~~~~~~~a~~~~p~~~~~~l~~~---------~~~~A~~~~~~a~~~~~~  328 (425)
                      ..    ..++++|+.+|++ +.+........+||.+         ++.+|..+|+++.+..+.
T Consensus       329 ~~G~g~~~d~~~A~~~~~~-Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~  390 (452)
T 3e4b_A          329 RRGYLGKVYPQKALDHLLT-AARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP  390 (452)
T ss_dssp             HTTTTSSCCHHHHHHHHHH-HHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred             HCCCCCCcCHHHHHHHHHH-HHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence            87    3499999999999 9886554447777776         899999999999876543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.72  E-value=4.8e-15  Score=133.96  Aligned_cols=190  Identities=10%  Similarity=-0.027  Sum_probs=163.4

Q ss_pred             HHHHHHHHHhcc---cchHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-HHHHHHHHH
Q psy1863         151 VSQAVDVLKSCD---EMTSSAATNLSFIYFLQG--EVEQAEKMAEEACTADTYNSAAFVNLGNCAMARED-YVKGKELYV  224 (425)
Q Consensus       151 ~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~  224 (425)
                      +++++.++..++   |.+..+|...+.++...|  .+++++.++.++++.+|.|..+|...+.+....|. +++++.++.
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~  169 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD  169 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence            567888888888   999999999999999999  48999999999999999999999999999999998 699999999


Q ss_pred             HHHhcCcCcHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------
Q psy1863         225 HALDNDATCIEALYNLGLAHKHL--------------NEYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT---------  281 (425)
Q Consensus       225 ~al~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------  281 (425)
                      +++..+|.+..+|.+++.++...              +.++++++++.+++..+|++..+|+.+..++...         
T Consensus       170 ~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~  249 (331)
T 3dss_A          170 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVE  249 (331)
T ss_dssp             HHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchH
Confidence            99999999999999999999887              5689999999999999999999998666665554         


Q ss_pred             --CCHHHHHHHHHHHHHhcCcchHHHHHHHh----------hHHHHHHHHHHHHhhcCCchhhHhhchHHHH
Q psy1863         282 --GDVEQASDVNENLLLEAVRNDALSQLHRE----------MKHEAEKCILTSAKLIAPSIEDNFSNGYNWC  341 (425)
Q Consensus       282 --g~~~~A~~~~~~~a~~~~p~~~~~~l~~~----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  341 (425)
                        +.++++++++.+ +++..|++.|..++.+          ..++...++.+..+++|...+.+..++-.+.
T Consensus       250 ~~~~l~~el~~~~e-lle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~~  320 (331)
T 3dss_A          250 KSTVLQSELESCKE-LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL  320 (331)
T ss_dssp             HHHHHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence              458899999999 9999999884333332          5568888999999999988776655543333

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.72  E-value=9.8e-17  Score=128.44  Aligned_cols=107  Identities=21%  Similarity=0.311  Sum_probs=55.6

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL  242 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  242 (425)
                      |..+.+++.+|.+++..|++++|+..|++++..+|.++.+++.+|.++...|++++|+.+|++++.++|+++.+++++|.
T Consensus        15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~   94 (142)
T 2xcb_A           15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAE   94 (142)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence            44444555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy1863         243 AHKHLNEYSDSLECFHKLQAIVPSMPE  269 (425)
Q Consensus       243 ~~~~~g~~~~A~~~~~~al~~~p~~~~  269 (425)
                      ++..+|++++|+.+|++++.+.|+++.
T Consensus        95 ~~~~~g~~~~A~~~~~~al~~~p~~~~  121 (142)
T 2xcb_A           95 CHLQLGDLDGAESGFYSARALAAAQPA  121 (142)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence            555555555555555555555544443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.71  E-value=4.7e-16  Score=133.33  Aligned_cols=134  Identities=13%  Similarity=0.145  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q psy1863         166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHK  245 (425)
Q Consensus       166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  245 (425)
                      ...++.+|.++...|++++|+..|++++  +| ++.+++++|.++...|++++|+.+|++++..+|+++.++.++|.++.
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            4567899999999999999999999996  33 78999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         246 HLNEYSDSLECFHKLQAIVPSMP----------------EVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       246 ~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      ..|++++|+..|+++++..|.+.                .+++++|.++...|++++|+.+|++ +++..|++.
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~p~~~  155 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL-ATSMKSEPR  155 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHTTCCSGG
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH-HHHcCcccc
Confidence            99999999999999999888776                9999999999999999999999999 999999764

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.71  E-value=7.1e-16  Score=126.34  Aligned_cols=134  Identities=15%  Similarity=0.133  Sum_probs=122.1

Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q psy1863         164 MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLA  243 (425)
Q Consensus       164 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~  243 (425)
                      ..+..+..+|.+++..|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++..+|.++.++.++|.+
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~   90 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHhc
Q psy1863         244 HKHLNEYSDSLECFHKLQAIVPSMPEVLYQIAS--LYEITGDVEQASDVNENLLLEA  298 (425)
Q Consensus       244 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~--~~~~~g~~~~A~~~~~~~a~~~  298 (425)
                      +...|++++|+.+|++++..+|.+..++..++.  .+...|++++|+..+.+ +...
T Consensus        91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-~~~~  146 (166)
T 1a17_A           91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH-KRSV  146 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccc-hHHH
Confidence            999999999999999999999999988855544  48888999999999988 6543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.70  E-value=5.7e-17  Score=129.82  Aligned_cols=116  Identities=11%  Similarity=0.066  Sum_probs=109.7

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy1863         187 KMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS  266 (425)
Q Consensus       187 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  266 (425)
                      ..|++++..+|++...++.+|.+++..|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|++++.++|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            56788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         267 MPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       267 ~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      ++.+++.+|.++..+|++++|+.+|++ ++++.|+++
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~p~~~  120 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGDLDGAESGFYS-ARALAAAQP  120 (142)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHTCG
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCc
Confidence            999999999999999999999999999 999998877

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.70  E-value=1.7e-16  Score=144.51  Aligned_cols=167  Identities=14%  Similarity=0.049  Sum_probs=142.7

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C---
Q psy1863         134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTY--N---  199 (425)
Q Consensus       134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~---  199 (425)
                      +.+.+...|.++...|++++|+..|.+++         .....++.++|.+|..+|++++|+.+|++++.+.+.  +   
T Consensus        35 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~  114 (307)
T 2ifu_A           35 AASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDT  114 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            34445566888999999999999999988         233668899999999999999999999999988532  2   


Q ss_pred             -HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----
Q psy1863         200 -SAAFVNLGNCAMAREDYVKGKELYVHALDNDATC------IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM-----  267 (425)
Q Consensus       200 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----  267 (425)
                       ..++.++|.+|.. |++++|+.+|++++.+.|..      ..++.++|.++..+|++++|+.+|++++.+.|.+     
T Consensus       115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  193 (307)
T 2ifu_A          115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT  193 (307)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH
Confidence             4678999999998 99999999999999986643      5788999999999999999999999999986643     


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         268 -PEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       268 -~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                       ..++..+|.++..+|++++|+.+|++ ++ .+|+..
T Consensus       194 ~~~~~~~~g~~~~~~g~~~~A~~~~~~-al-~~p~~~  228 (307)
T 2ifu_A          194 CYKKCIAQVLVQLHRADYVAAQKCVRE-SY-SIPGFS  228 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHH-HT-TSTTST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHH-Hh-CCCCCC
Confidence             34788899999999999999999999 99 888754

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.70  E-value=4.4e-15  Score=133.51  Aligned_cols=200  Identities=10%  Similarity=-0.035  Sum_probs=178.5

Q ss_pred             hHHHHHHHHHHHHcC--CHHHHHHHHHhcc---cchHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHhcCCCCHHH
Q psy1863         135 QDLEINKAVTFLRMN--DVSQAVDVLKSCD---EMTSSAATNLSFIY----FLQ---GEVEQAEKMAEEACTADTYNSAA  202 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~lg~~~----~~~---g~~~~A~~~~~~al~~~p~~~~~  202 (425)
                      ..++..++.++...|  ++++++..+..++   |.+..+|+..+.++    ...   +++++++.++.++++.+|.+..+
T Consensus        67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~a  146 (306)
T 3dra_A           67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHV  146 (306)
T ss_dssp             HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHH
Confidence            345677899999999  9999999999999   99999999999999    777   89999999999999999999999


Q ss_pred             HHHHHHHHHHhcCHH--HHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhhCCCCHHHHHHH
Q psy1863         203 FVNLGNCAMAREDYV--KGKELYVHALDNDATCIEALYNLGLAHKHLNE------YSDSLECFHKLQAIVPSMPEVLYQI  274 (425)
Q Consensus       203 ~~~la~~~~~~g~~~--~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~l  274 (425)
                      |...+.+....|.++  +++.++.++++.+|.+..+|.+.+.+....|+      ++++++++.+++..+|++..+|+.+
T Consensus       147 W~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~  226 (306)
T 3dra_A          147 WSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYL  226 (306)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred             HHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHH
Confidence            999999999999999  99999999999999999999999999999988      9999999999999999999999999


Q ss_pred             HHHHHHcCCHHH-HHHHHHHHHHhcC---cchH--HHHHHHh-----hHHHHHHHHHHHHh-hcCCchhhHhh
Q psy1863         275 ASLYEITGDVEQ-ASDVNENLLLEAV---RNDA--LSQLHRE-----MKHEAEKCILTSAK-LIAPSIEDNFS  335 (425)
Q Consensus       275 a~~~~~~g~~~~-A~~~~~~~a~~~~---p~~~--~~~l~~~-----~~~~A~~~~~~a~~-~~~~~~~~~~~  335 (425)
                      +.++...|+... ...++.+ ++...   |.++  +..++.+     +.++|+++|+.+.+ .+|.....|..
T Consensus       227 ~~ll~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~  298 (306)
T 3dra_A          227 LGIHERFDRSITQLEEFSLQ-FVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDY  298 (306)
T ss_dssp             HHHHHHTTCCGGGGHHHHHT-TEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHhcCCChHHHHHHHHH-HHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHH
Confidence            999999998555 5567777 77765   6666  6666666     88999999999997 78877665543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.69  E-value=1.5e-15  Score=119.30  Aligned_cols=130  Identities=27%  Similarity=0.398  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy1863         137 LEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAR  213 (425)
Q Consensus       137 ~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  213 (425)
                      .++.+|..+...|++++|+..+++++   |..+.++..+|.++...|++++|+..+++++...|.++.++..+|.++...
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence            45788999999999999999999998   788899999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy1863         214 EDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS  266 (425)
Q Consensus       214 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  266 (425)
                      |++++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|.
T Consensus        83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            99999999999999999999999999999999999999999999999999885

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.69  E-value=1.8e-14  Score=130.23  Aligned_cols=219  Identities=6%  Similarity=-0.079  Sum_probs=183.8

Q ss_pred             HHHcCCHH-HHHHHHHhcc---cchHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy1863         145 FLRMNDVS-QAVDVLKSCD---EMTSSAATNLSFIYFLQGE----------VEQAEKMAEEACTADTYNSAAFVNLGNCA  210 (425)
Q Consensus       145 ~~~~g~~~-~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (425)
                      ....|.++ +|+.++.+++   |.+..+|+..+.+....|.          +++++.++..++..+|.+..+|+..+.++
T Consensus        39 ~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL  118 (331)
T 3dss_A           39 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL  118 (331)
T ss_dssp             HHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34566665 7999999998   9999999999999988776          78999999999999999999999999999


Q ss_pred             HHhcC--HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc------
Q psy1863         211 MARED--YVKGKELYVHALDNDATCIEALYNLGLAHKHLNE-YSDSLECFHKLQAIVPSMPEVLYQIASLYEIT------  281 (425)
Q Consensus       211 ~~~g~--~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------  281 (425)
                      ...|+  +++++.++.++++.+|.+..+|.+.+.+....|. ++++++++.+++..+|.+..+|..++.++...      
T Consensus       119 ~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~  198 (331)
T 3dss_A          119 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS  198 (331)
T ss_dssp             HHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC--
T ss_pred             hccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccc
Confidence            99994  9999999999999999999999999999999999 69999999999999999999999999999887      


Q ss_pred             --------CCHHHHHHHHHHHHHhcCcchH--HHHH-HHh---------------hHHHHHHHHHHHHhhcCCchhhHhh
Q psy1863         282 --------GDVEQASDVNENLLLEAVRNDA--LSQL-HRE---------------MKHEAEKCILTSAKLIAPSIEDNFS  335 (425)
Q Consensus       282 --------g~~~~A~~~~~~~a~~~~p~~~--~~~l-~~~---------------~~~~A~~~~~~a~~~~~~~~~~~~~  335 (425)
                              +.++++++++.+ ++..+|+|.  |..+ +.+               .++++++++.++++..|++.-  ..
T Consensus       199 ~~~~~~~~~~~~eEle~~~~-ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w--~l  275 (331)
T 3dss_A          199 GPQGRLPENVLLKELELVQN-AFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKW--CL  275 (331)
T ss_dssp             ----CCCHHHHHHHHHHHHH-HHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHH--HH
T ss_pred             ccccccchHHHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccch--HH
Confidence                    568999999999 999999999  5433 332               367999999999999998732  21


Q ss_pred             chHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q psy1863         336 NGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTS  386 (425)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  386 (425)
                      .+...+.                    ...-..|..++...++.+..++.|
T Consensus       276 ~~~~~~~--------------------~~~~~~~~~~~~~~~l~~l~~~Dp  306 (331)
T 3dss_A          276 LTIILLM--------------------RALDPLLYEKETLQYFSTLKAVDP  306 (331)
T ss_dssp             HHHHHHH--------------------HHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHH--------------------HhhcccccHHHHHHHHHHHHHhCc
Confidence            1111110                    011134667888888888877775

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.69  E-value=7.2e-14  Score=144.15  Aligned_cols=116  Identities=20%  Similarity=0.160  Sum_probs=85.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----------------
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTY----------------  198 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----------------  198 (425)
                      ..++..+|..+...|++++|+..|.++  +++..+..+|.++...|++++|+++|..+.+..++                
T Consensus      1105 p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A         1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNR 1182 (1630)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcC
Confidence            556678888888888888888888776  77788888888888888888888888777755532                


Q ss_pred             -----------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863         199 -----------NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKL  260 (425)
Q Consensus       199 -----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  260 (425)
                                 +...+..+|..+...|+|++|+.+|.++        ..|..+|.++.++|++++|+++++++
T Consensus      1183 leele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A         1183 LAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence                       2233556777777777777777777764        36667777777777777777777766

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.69  E-value=7.2e-16  Score=120.77  Aligned_cols=108  Identities=18%  Similarity=0.213  Sum_probs=83.4

Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc-------HHH
Q psy1863         164 MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC-------IEA  236 (425)
Q Consensus       164 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~  236 (425)
                      +.+.++.++|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|++       ..+
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~   85 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA   85 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence            4456777888888888888888888888888888888888888888888888888888888888876654       346


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy1863         237 LYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLY  272 (425)
Q Consensus       237 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  272 (425)
                      +.++|.++..+|++++|+.+|++++...| ++....
T Consensus        86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~  120 (127)
T 4gcn_A           86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVK  120 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHH
Confidence            77777888888888888888888877776 344433

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.69  E-value=7.7e-16  Score=121.03  Aligned_cols=121  Identities=14%  Similarity=0.139  Sum_probs=114.0

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL  242 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  242 (425)
                      +..+.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.++++++..+|+++.++.++|.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~   92 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA   92 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            66788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy1863         243 AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGD  283 (425)
Q Consensus       243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  283 (425)
                      ++...|++++|+.+|++++..+|.+..++..++.++..+|+
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999988764

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.68  E-value=1.3e-15  Score=119.14  Aligned_cols=122  Identities=14%  Similarity=0.077  Sum_probs=116.1

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL  242 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  242 (425)
                      +..+.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++..+|+++.++..+|.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~   88 (131)
T 2vyi_A            9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence            56678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy1863         243 AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDV  284 (425)
Q Consensus       243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  284 (425)
                      ++...|++++|+.+|++++...|+++.++..+|.++..+|++
T Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999988875

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.68  E-value=8.3e-16  Score=126.22  Aligned_cols=114  Identities=17%  Similarity=0.030  Sum_probs=87.4

Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q psy1863         164 MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLA  243 (425)
Q Consensus       164 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~  243 (425)
                      ..+..++.+|.+++..|++++|+.+|+++++.+|.++.+++++|.++...|++++|+.+|++++.++|+++.+++++|.+
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   88 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            45667777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy1863         244 HKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASL  277 (425)
Q Consensus       244 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  277 (425)
                      +..+|++++|+.+|+++++++|++..+++..+..
T Consensus        89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  122 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE  122 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            7777777777777777777777777766655544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.68  E-value=1.1e-15  Score=131.19  Aligned_cols=169  Identities=13%  Similarity=0.063  Sum_probs=149.8

Q ss_pred             HHHHHHHhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc----CHHHHHHHHHHHH
Q psy1863         153 QAVDVLKSCD-EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE----DYVKGKELYVHAL  227 (425)
Q Consensus       153 ~A~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al  227 (425)
                      +|+..|+++. ..++.+++.+|.+|...+++++|+.+|+++++.  .++.+++++|.+|.. +    ++++|+.+|+++.
T Consensus         4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~   80 (212)
T 3rjv_A            4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAV   80 (212)
T ss_dssp             CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence            4777888887 788999999999999999999999999999875  689999999999998 7    9999999999996


Q ss_pred             hcCcCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q psy1863         228 DNDATCIEALYNLGLAHKH----LNEYSDSLECFHKLQAIVP--SMPEVLYQIASLYEI----TGDVEQASDVNENLLLE  297 (425)
Q Consensus       228 ~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~g~~~~A~~~~~~~a~~  297 (425)
                      .  +.++.+++++|.+|..    .+++++|+.+|+++.+..|  .++.++++||.+|..    .+++++|+.+|++ +.+
T Consensus        81 ~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~-A~~  157 (212)
T 3rjv_A           81 E--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG-SSS  157 (212)
T ss_dssp             H--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH-HHH
T ss_pred             H--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH-HHH
Confidence            5  5789999999999998    8999999999999999887  358999999999999    8999999999999 998


Q ss_pred             cCcchH--HHHHHHh-----------hHHHHHHHHHHHHhhcCC
Q psy1863         298 AVRNDA--LSQLHRE-----------MKHEAEKCILTSAKLIAP  328 (425)
Q Consensus       298 ~~p~~~--~~~l~~~-----------~~~~A~~~~~~a~~~~~~  328 (425)
                      . |.++  ..+||.+           ++++|+.+|+++.+....
T Consensus       158 ~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~  200 (212)
T 3rjv_A          158 L-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD  200 (212)
T ss_dssp             T-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred             c-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence            8 3333  6666665           479999999999887543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.68  E-value=5.2e-16  Score=141.26  Aligned_cols=170  Identities=14%  Similarity=0.069  Sum_probs=143.9

Q ss_pred             cCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHH
Q psy1863         148 MNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN------SAAFVNLGNCAMAREDYVKGKE  221 (425)
Q Consensus       148 ~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~  221 (425)
                      .+++++|+.+|.++           |.+|...|++++|+..|.+++.+.+..      ..++.++|.+|..+|++++|+.
T Consensus        29 ~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~   97 (307)
T 2ifu_A           29 KPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ   97 (307)
T ss_dssp             SCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH
T ss_pred             CCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            46777777766654           788999999999999999999886532      4679999999999999999999


Q ss_pred             HHHHHHhcCcC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHH
Q psy1863         222 LYVHALDNDAT------CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM------PEVLYQIASLYEITGDVEQASD  289 (425)
Q Consensus       222 ~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~  289 (425)
                      +|++++.+.+.      ...++.++|.+|.. |++++|+.+|++++.+.|..      ..++.++|.++..+|++++|+.
T Consensus        98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  176 (307)
T 2ifu_A           98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA  176 (307)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999988532      25688999999999 99999999999999987643      5689999999999999999999


Q ss_pred             HHHHHHHhcCcchH--------HHHHHHh-----hHHHHHHHHHHHHhhcCCchh
Q psy1863         290 VNENLLLEAVRNDA--------LSQLHRE-----MKHEAEKCILTSAKLIAPSIE  331 (425)
Q Consensus       290 ~~~~~a~~~~p~~~--------~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~  331 (425)
                      +|++ ++.+.|++.        +..++.+     ++++|..+|++++ ..|....
T Consensus       177 ~~~~-al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~  229 (307)
T 2ifu_A          177 SLQK-EKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG  229 (307)
T ss_dssp             HHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred             HHHH-HHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence            9999 999866432        4444444     8999999999999 8887654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.68  E-value=1.5e-17  Score=153.36  Aligned_cols=175  Identities=15%  Similarity=0.083  Sum_probs=150.2

Q ss_pred             cCCHHHHHHHHHh----cc---cchHHHHHHHHHHHH------------HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy1863         148 MNDVSQAVDVLKS----CD---EMTSSAATNLSFIYF------------LQGEVEQAEKMAEEACTADTYNSAAFVNLGN  208 (425)
Q Consensus       148 ~g~~~~A~~~~~~----~~---~~~~~~~~~lg~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  208 (425)
                      .+.+++|+..+..    ++   |..  ++...|....            .++++++|+..+++++..+|..+.++.++|.
T Consensus        78 ~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~  155 (336)
T 1p5q_A           78 PYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGT  155 (336)
T ss_dssp             CHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHH
Confidence            4467778877777    44   433  4555554432            4677888999999999999999999999999


Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCcCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy1863         209 CAMAREDYVKGKELYVHALDNDATC---------------IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQ  273 (425)
Q Consensus       209 ~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  273 (425)
                      +++..|++++|+.+|++++.+.|++               ..++.++|.++..+|++++|+.+|+++++++|+++.++++
T Consensus       156 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  235 (336)
T 1p5q_A          156 VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSR  235 (336)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            9999999999999999999999998               6999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHH-HHHHHHHHhh
Q psy1863         274 IASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEA-EKCILTSAKL  325 (425)
Q Consensus       274 la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A-~~~~~~a~~~  325 (425)
                      +|.++..+|++++|+..|++ +++++|++.  +..++.+     ++++| ...|.+++..
T Consensus       236 lg~~~~~~g~~~~A~~~~~~-al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          236 RGEAHLAVNDFELARADFQK-VLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHTTCHHHHHHHHHH-HHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999 999999998  7777776     55566 4466666554

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.68  E-value=2.3e-16  Score=133.84  Aligned_cols=152  Identities=15%  Similarity=0.131  Sum_probs=124.8

Q ss_pred             HHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----------------HH
Q psy1863         142 AVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS----------------AA  202 (425)
Q Consensus       142 a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~  202 (425)
                      +......|+++++.+.+....   +..+..+..+|..++..|++++|+..|++++...|.++                .+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~   90 (198)
T 2fbn_A           11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC   90 (198)
T ss_dssp             -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence            445566777887777776655   56778899999999999999999999999999998887                88


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy1863         203 FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG  282 (425)
Q Consensus       203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  282 (425)
                      +.++|.++...|++++|+.++++++..+|+++.+++++|.++..+|++++|+..|++++.++|++..++..++.++..++
T Consensus        91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  170 (198)
T 2fbn_A           91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  170 (198)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CHHHHH-HHHHH
Q psy1863         283 DVEQAS-DVNEN  293 (425)
Q Consensus       283 ~~~~A~-~~~~~  293 (425)
                      +..++. ..|..
T Consensus       171 ~~~~~~~~~~~~  182 (198)
T 2fbn_A          171 EARKKDKLTFGG  182 (198)
T ss_dssp             HHHC--------
T ss_pred             HHHHHHHHHHHH
Confidence            887776 34444

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.67  E-value=3.2e-15  Score=135.10  Aligned_cols=161  Identities=12%  Similarity=0.001  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcc---c------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HH
Q psy1863         137 LEINKAVTFLRMNDVSQAVDVLKSCD---E------MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN------SA  201 (425)
Q Consensus       137 ~~~~~a~~~~~~g~~~~A~~~~~~~~---~------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~  201 (425)
                      .....+..++..|++++|+..+.+++   +      .....++.+|.++...|++++|+.++++++...+..      ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            34677889999999999999999877   2      223456789999999999999999999999875443      56


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHH---hcCcCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CH
Q psy1863         202 AFVNLGNCAMAREDYVKGKELYVHAL---DNDATC----IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS------MP  268 (425)
Q Consensus       202 ~~~~la~~~~~~g~~~~A~~~~~~al---~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~  268 (425)
                      ++.++|.+|...|++++|+.+|++++   ...|++    ..+++++|.+|..+|++++|+.++++++.+.+.      ..
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            89999999999999999999999999   445553    368999999999999999999999999987542      26


Q ss_pred             HHHHHHHHHHHHcCCHHHH-HHHHHHHHHhc
Q psy1863         269 EVLYQIASLYEITGDVEQA-SDVNENLLLEA  298 (425)
Q Consensus       269 ~~~~~la~~~~~~g~~~~A-~~~~~~~a~~~  298 (425)
                      .+++++|.+|..+|++++| ..++++ ++.+
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~-Al~~  266 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKK-ASFF  266 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHH-HHHH
Confidence            7899999999999999999 788999 8765

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.67  E-value=1.1e-13  Score=142.73  Aligned_cols=213  Identities=11%  Similarity=0.035  Sum_probs=162.8

Q ss_pred             HcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy1863         147 RMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHA  226 (425)
Q Consensus       147 ~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  226 (425)
                      ..|++++|+++++++  ..+.+|+.+|.++...|++++|+..|.++     +++..+..+|.++.+.|+|++|+++|..+
T Consensus      1088 ~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A         1088 HIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMA 1160 (1630)
T ss_pred             HHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            677788888777775  66889999999999999999999999875     78889999999999999999999999999


Q ss_pred             HhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchHHHH
Q psy1863         227 LDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQ  306 (425)
Q Consensus       227 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~~~~  306 (425)
                      .+..++ +.+-..+|.+|.+++++++ ++.|.     .+.+...+..+|..+...|++++|..+|.+ +-      .|..
T Consensus      1161 rk~~~e-~~Idt~LafaYAKl~rlee-le~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~k-A~------ny~r 1226 (1630)
T 1xi4_A         1161 RKKARE-SYVETELIFALAKTNRLAE-LEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNN-VS------NFGR 1226 (1630)
T ss_pred             Hhhccc-ccccHHHHHHHHhhcCHHH-HHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-hh------HHHH
Confidence            988744 3333459999999999885 55442     233556777899999999999999999999 62      2555


Q ss_pred             HHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhh-----hcHHHHHHHHHHHhcCCHHHHHH
Q psy1863         307 LHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSL-----AQDLEINKAVTFLRMNDVSQAVD  376 (425)
Q Consensus       307 l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~  376 (425)
                      ++.+     ++++|++.+.++     .+...|...++..+..+....+....     .++....++..|...|.|++|+.
T Consensus      1227 LA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~ 1301 (1630)
T 1xi4_A         1227 LASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELIT 1301 (1630)
T ss_pred             HHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHH
Confidence            5555     899999999998     33456655544333222222222111     34455578999999999999999


Q ss_pred             HHHHHHhhc
Q psy1863         377 VLKSCDEMT  385 (425)
Q Consensus       377 ~~~~~~~~~  385 (425)
                      +++.+..+.
T Consensus      1302 LlE~aL~Le 1310 (1630)
T 1xi4_A         1302 MLEAALGLE 1310 (1630)
T ss_pred             HHHHHhccC
Confidence            999986554

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.67  E-value=1.1e-15  Score=127.12  Aligned_cols=126  Identities=17%  Similarity=0.126  Sum_probs=99.3

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHH-HHHcCCH--HHH
Q psy1863         177 FLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLA-HKHLNEY--SDS  253 (425)
Q Consensus       177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~g~~--~~A  253 (425)
                      ...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|++++..+|+++.++..+|.+ +...|++  ++|
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence            4467778888888888888888888888888888888888888888888888888888888888888 7778887  888


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         254 LECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       254 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      +..+++++..+|+++.+++.+|.++...|++++|+..|++ +++.+|+++
T Consensus       101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~p~~~  149 (177)
T 2e2e_A          101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQK-VMDLNSPRI  149 (177)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHTCCTTS
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHH-HHhhCCCCc
Confidence            8888888888888888888888888888888888888888 888887766

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.67  E-value=1.4e-15  Score=118.94  Aligned_cols=106  Identities=9%  Similarity=0.072  Sum_probs=101.4

Q ss_pred             CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy1863         197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIAS  276 (425)
Q Consensus       197 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  276 (425)
                      |..+..+..+|..++..|++++|+..|++++..+|+++.++.++|.++..+|++++|+..|+++++++|+++.+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcC------cchH
Q psy1863         277 LYEITGDVEQASDVNENLLLEAV------RNDA  303 (425)
Q Consensus       277 ~~~~~g~~~~A~~~~~~~a~~~~------p~~~  303 (425)
                      ++..+|++++|+..|++ +++++      |+++
T Consensus        81 ~~~~~~~~~~A~~~~~~-al~~~p~~~~~p~~~  112 (126)
T 3upv_A           81 AQIAVKEYASALETLDA-ARTKDAEVNNGSSAR  112 (126)
T ss_dssp             HHHHTTCHHHHHHHHHH-HHHHHHHHHTTTTHH
T ss_pred             HHHHHhCHHHHHHHHHH-HHHhCcccCCchhHH
Confidence            99999999999999999 99999      7666

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.67  E-value=5.5e-16  Score=139.17  Aligned_cols=164  Identities=10%  Similarity=0.069  Sum_probs=121.0

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL  242 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  242 (425)
                      |..+.++..+|..++..|++++|+..|++++..+|+++.++.++|.++...|++++|+..++++++++|+++.+++++|.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45677888889999999999999999999999999888899999999999999999999999999999988889999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh---hHHHHHH
Q psy1863         243 AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE---MKHEAEK  317 (425)
Q Consensus       243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~---~~~~A~~  317 (425)
                      ++..+|++++|+..|+++++++|+++..+........   ...++...... .....|.++  ...++.+   ++++|+.
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~i~~~l~~l~~~~~~~A~~  156 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSI-EERRIHQESELHSYLTRLIAAERERELE  156 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHH-HHTCCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998888865322221211111   11222233333 344455544  4444444   7788888


Q ss_pred             HHHHHHhhcCCch
Q psy1863         318 CILTSAKLIAPSI  330 (425)
Q Consensus       318 ~~~~a~~~~~~~~  330 (425)
                      .++++++..|.+.
T Consensus       157 ~~~~al~~~p~~~  169 (281)
T 2c2l_A          157 ECQRNHEGHEDDG  169 (281)
T ss_dssp             TTSGGGTTTSCHH
T ss_pred             HHHhhhccccchh
Confidence            8888888777553

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.66  E-value=9.7e-16  Score=120.04  Aligned_cols=104  Identities=16%  Similarity=0.212  Sum_probs=96.6

Q ss_pred             CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------HHH
Q psy1863         199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMP-------EVL  271 (425)
Q Consensus       199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~  271 (425)
                      .+.++.++|.+++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|++.       .++
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            3467889999999999999999999999999999999999999999999999999999999999988653       578


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         272 YQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       272 ~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      .++|.++..+|++++|+.+|++ ++...|+..
T Consensus        87 ~~lg~~~~~~~~~~~A~~~~~k-al~~~~~~~  117 (127)
T 4gcn_A           87 SRAGNAFQKQNDLSLAVQWFHR-SLSEFRDPE  117 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHH-HHHHSCCHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHH-HHhhCcCHH
Confidence            9999999999999999999999 999888654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.65  E-value=3.2e-15  Score=135.08  Aligned_cols=159  Identities=11%  Similarity=0.030  Sum_probs=135.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcc---cch------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHH
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCD---EMT------SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN------SAAF  203 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~---~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~  203 (425)
                      ...+..++..|++++|+..+++++   +..      ...+..+|.++...|++++|+.++++++...+..      ..++
T Consensus        79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~  158 (293)
T 3u3w_A           79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE  158 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence            456788999999999999999987   222      2244568999999999999999999999865332      3479


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhc-------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHH
Q psy1863         204 VNLGNCAMAREDYVKGKELYVHALDN-------DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM------PEV  270 (425)
Q Consensus       204 ~~la~~~~~~g~~~~A~~~~~~al~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~  270 (425)
                      .++|.+|...|++++|+.+|+++++.       .+....+++++|.+|..+|++++|+.++++++.+.+..      +.+
T Consensus       159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~  238 (293)
T 3u3w_A          159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL  238 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence            99999999999999999999999953       22346689999999999999999999999999886533      689


Q ss_pred             HHHHHHHHHHcC-CHHHHHHHHHHHHHhc
Q psy1863         271 LYQIASLYEITG-DVEQASDVNENLLLEA  298 (425)
Q Consensus       271 ~~~la~~~~~~g-~~~~A~~~~~~~a~~~  298 (425)
                      ++++|.++..+| ++++|+.+|++ ++.+
T Consensus       239 ~~~lg~~~~~~g~~~~~A~~~~~~-Al~i  266 (293)
T 3u3w_A          239 YYQRGECLRKLEYEEAEIEDAYKK-ASFF  266 (293)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHH-HHHH
Confidence            999999999999 57999999999 8865

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.65  E-value=8.4e-16  Score=137.96  Aligned_cols=185  Identities=12%  Similarity=0.025  Sum_probs=149.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM  211 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  211 (425)
                      ...+..+|..++..|++++|+..|++++   |.++.++.++|.++...|++++|+..++++++.+|+++.+++++|.++.
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3456788999999999999999999999   8899999999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy1863         212 AREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVN  291 (425)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  291 (425)
                      .+|++++|+..|+++++++|+++..+........   +..++...........|.++.+...++.++  .|++++|+..+
T Consensus        84 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~  158 (281)
T 2c2l_A           84 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEEC  158 (281)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTT
T ss_pred             HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHH
Confidence            9999999999999999998866322222222222   223333444444456778888888887765  69999999999


Q ss_pred             HHHHHhcCcchH--HHHHHHh------hHHHHHHHHHHHHhh
Q psy1863         292 ENLLLEAVRNDA--LSQLHRE------MKHEAEKCILTSAKL  325 (425)
Q Consensus       292 ~~~a~~~~p~~~--~~~l~~~------~~~~A~~~~~~a~~~  325 (425)
                      ++ +++.+|++.  ...++.+      .+++|...|.++.+.
T Consensus       159 ~~-al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          159 QR-NHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             SG-GGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             Hh-hhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            99 999999987  3333333      566788888877664

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.64  E-value=1e-15  Score=142.14  Aligned_cols=220  Identities=10%  Similarity=0.093  Sum_probs=101.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHH
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVK  218 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  218 (425)
                      ..++.+|.+.|++.++.++++.  | +..+|..+|..++..|+|++|..+|.++        ..|..+|.++.++|+|++
T Consensus        98 ~~Li~~Y~Klg~l~e~e~f~~~--p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~  166 (449)
T 1b89_A           98 TELIFALAKTNRLAELEEFING--P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQA  166 (449)
T ss_dssp             -----------CHHHHTTTTTC--C-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHcC--C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHH
Confidence            3445555555555555444432  2 2235555555555555555555555544        245555555555555555


Q ss_pred             HHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy1863         219 GKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEA  298 (425)
Q Consensus       219 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~  298 (425)
                      |++.++++     .++.+|...+.++...|+++.|..+... +..+   ++-...++.+|.+.|.+++|+.++++ ++.+
T Consensus       167 AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~---ad~l~~lv~~Yek~G~~eEai~lLe~-aL~l  236 (449)
T 1b89_A          167 AVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITMLEA-ALGL  236 (449)
T ss_dssp             HHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTC---HHHHHHHHHHHHHTTCHHHHHHHHHH-HTTS
T ss_pred             HHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhC---HhhHHHHHHHHHHCCCHHHHHHHHHH-HhCC
Confidence            55555555     2455555555555555555555544443 1122   22233455555555555555555555 5555


Q ss_pred             CcchH--HHHHHHh----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchh-----hhcHHHHHHHHHHHh
Q psy1863         299 VRNDA--LSQLHRE----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSS-----LAQDLEINKAVTFLR  367 (425)
Q Consensus       299 ~p~~~--~~~l~~~----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~la~~~~~  367 (425)
                      ++.+.  +..++.+    ++++-.+.++.-...                      ...++     ....+|..+..+|..
T Consensus       237 e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~----------------------ini~k~~~~~~~~~~w~e~~~ly~~  294 (449)
T 1b89_A          237 ERAHMGMFTELAILYSKFKPQKMREHLELFWSR----------------------VNIPKVLRAAEQAHLWAELVFLYDK  294 (449)
T ss_dssp             TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT----------------------SCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----------------------hcCcHHHHHHHHHHHHHHHHHHHHh
Confidence            55544  4444444    222222222211100                      11111     235678889999999


Q ss_pred             cCCHHHHHHHHHHHHhhccC------------CccchhHHHHHhhhccC
Q psy1863         368 MNDVSQAVDVLKSCDEMTSS------------AATNLSFIYFLVSSEFQ  404 (425)
Q Consensus       368 ~g~~~~A~~~~~~~~~~~~~------------~~~~l~~~~~l~~~~~~  404 (425)
                      .++|+.|+.+.-.-   .+.            .+.|....|-...-.++
T Consensus       295 ~~e~d~A~~tm~~h---~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~  340 (449)
T 1b89_A          295 YEEYDNAIITMMNH---PTDAWKEGQFKDIITKVANVELYYRAIQFYLE  340 (449)
T ss_dssp             TTCHHHHHHHHHHS---TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH
T ss_pred             hchHHHHHHHHHhC---ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh
Confidence            99999999866554   222            35566666655554554

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.64  E-value=1.7e-15  Score=126.00  Aligned_cols=128  Identities=15%  Similarity=0.125  Sum_probs=116.8

Q ss_pred             HHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHhcCH--HH
Q psy1863         145 FLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNC-AMAREDY--VK  218 (425)
Q Consensus       145 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~~  218 (425)
                      +...|++++|+..+++++   |.++.++..+|.++...|++++|+.+|++++..+|.++.++..+|.+ +...|++  ++
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence            456789999999999988   88999999999999999999999999999999999999999999999 8899999  99


Q ss_pred             HHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy1863         219 GKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLY  272 (425)
Q Consensus       219 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  272 (425)
                      |+.+|++++..+|+++.++.++|.++...|++++|+..|++++..+|+++....
T Consensus       100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  153 (177)
T 2e2e_A          100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ  153 (177)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence            999999999999999999999999999999999999999999999998765443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.64  E-value=8.3e-16  Score=122.54  Aligned_cols=102  Identities=15%  Similarity=0.136  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHhcCHHHHHHHHHHHHhc----
Q psy1863         166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTY-------NSA-----AFVNLGNCAMAREDYVKGKELYVHALDN----  229 (425)
Q Consensus       166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~----  229 (425)
                      +..+...|..++..|+|++|+..|+++++++|+       +..     +|.++|.++..+|+|++|+.+|++++++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            345667777777777777777777777777776       222     5555555555555555555555555555    


Q ss_pred             ---CcCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy1863         230 ---DATCIEAL----YNLGLAHKHLNEYSDSLECFHKLQAIVPSM  267 (425)
Q Consensus       230 ---~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~  267 (425)
                         +|+++.+|    +++|.++..+|++++|+.+|++++++.|++
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence               55555555    555555555555555555555555554443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.64  E-value=1.9e-14  Score=111.39  Aligned_cols=117  Identities=30%  Similarity=0.433  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q psy1863         166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHK  245 (425)
Q Consensus       166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  245 (425)
                      +.+++.+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+.++++++...|.++.++..+|.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            67888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy1863         246 HLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG  282 (425)
Q Consensus       246 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  282 (425)
                      ..|++++|+..+++++..+|+++.++..++.++...|
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999887654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.64  E-value=1.8e-14  Score=110.34  Aligned_cols=114  Identities=14%  Similarity=0.123  Sum_probs=105.0

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q psy1863         165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAH  244 (425)
Q Consensus       165 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~  244 (425)
                      .+..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++.++|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy1863         245 KHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLY  278 (425)
Q Consensus       245 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  278 (425)
                      ...|++++|+..++++++.+|+++.++..++.+.
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            9999999999999999999999999988888764

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.63  E-value=5.3e-15  Score=117.15  Aligned_cols=115  Identities=11%  Similarity=0.156  Sum_probs=69.5

Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q psy1863         164 MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLA  243 (425)
Q Consensus       164 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~  243 (425)
                      ..+..+..+|.+++..|++++|+..|++++..+|.++.++.++|.++...|++++|+..+++++..+|+++.+++++|.+
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   86 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   86 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence            34555666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHH
Q psy1863         244 HKHLNEYSDSLECFHKLQAIVPS-----MPEVLYQIASLY  278 (425)
Q Consensus       244 ~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~  278 (425)
                      +...|++++|+..|++++...|+     +..+...+..+.
T Consensus        87 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~  126 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK  126 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666554     444444444443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.63  E-value=4.3e-16  Score=149.69  Aligned_cols=143  Identities=20%  Similarity=0.229  Sum_probs=127.5

Q ss_pred             cCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHH
Q psy1863         148 MNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN---------------SAAFVNLGNC  209 (425)
Q Consensus       148 ~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~  209 (425)
                      .+++++|+..+..++   |..+.++..+|.+++..|++++|+..|+++++++|.+               ..+++++|.+
T Consensus       247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  326 (457)
T 1kt0_A          247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC  326 (457)
T ss_dssp             EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            345666776666665   7788899999999999999999999999999999998               6899999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy1863         210 AMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASD  289 (425)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  289 (425)
                      +..+|++++|+.+|++++.++|+++.+++++|.+|..+|++++|+..|+++++++|++..++..++.++..++++++|..
T Consensus       327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~  406 (457)
T 1kt0_A          327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR  406 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988765


Q ss_pred             H
Q psy1863         290 V  290 (425)
Q Consensus       290 ~  290 (425)
                      .
T Consensus       407 ~  407 (457)
T 1kt0_A          407 R  407 (457)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.63  E-value=8.3e-15  Score=128.75  Aligned_cols=231  Identities=12%  Similarity=0.073  Sum_probs=162.4

Q ss_pred             HHHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCccccc-------chhcchhhhhcchhhcccc
Q psy1863          10 RMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNI-------ELTFSNINRKKNARAVRND   82 (425)
Q Consensus        10 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l-------~~~~~~~~~~~~~~~~~~d   82 (425)
                      .|+.++.+++..|+.+ ..+++.+|++.|.+++.++        |.....+..+       +.++..+++..        
T Consensus         2 ~~~~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~d--------P~~~Daw~g~~a~g~~~~~~L~~~~r~~--------   64 (282)
T 4f3v_A            2 HMTDRLASLFESAVSM-LPMSEARSLDLFTEITNYD--------ESACDAWIGRIRCGDTDRVTLFRAWYSR--------   64 (282)
T ss_dssp             HHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHTTCCCHHHHHHHHHTG--------
T ss_pred             CchHHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhC--------hhhhHHHHhHHHccCCcHHHHHHHHHHH--------
Confidence            3678889999999987 6999999999999999988        4332333333       22222222211        


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhchhhhhh-hhHHHHHHHHH-hcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy1863          83 ALSQLHREMKHEAEKCILTSAKLIAPSIEDNFS-NGYNWCVQSIR-NSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKS  160 (425)
Q Consensus        83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~  160 (425)
                                 +..........+-...+...+. .|.      .. -........++.+..|..+...|++++|.+.|..
T Consensus        65 -----------~a~~~~~~~l~l~p~~l~a~~~~~g~------y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~  127 (282)
T 4f3v_A           65 -----------RNFGQLSGSVQISMSTLNARIAIGGL------YGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEA  127 (282)
T ss_dssp             -----------GGTTHHHHTTTCCGGGGCCEEECCTT------TCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTS
T ss_pred             -----------HHHHHHHHHhcCChhhhhhhhccCCc------ccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence                       0001111111110011111111 010      00 0000112367778889999999999999999999


Q ss_pred             cc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cC-
Q psy1863         161 CD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN--SAAFVNLGNCAMAREDYVKGKELYVHALDND--AT-  232 (425)
Q Consensus       161 ~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~-  232 (425)
                      .+   |... +.+.+|.+++..|++++|+.+|+.+....+..  ..+++++|.++..+|++++|+.+|++++...  |. 
T Consensus       128 ~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~  206 (282)
T 4f3v_A          128 APVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEAC  206 (282)
T ss_dssp             SCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT
T ss_pred             HHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccc
Confidence            88   7777 99999999999999999999999887653221  3589999999999999999999999998654  55 


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy1863         233 CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIAS  276 (425)
Q Consensus       233 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  276 (425)
                      .+.+++++|.++..+|+.++|...|++++..+|+ ..+...|..
T Consensus       207 ~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~  249 (282)
T 4f3v_A          207 ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD  249 (282)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence            6779999999999999999999999999999998 776665543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.63  E-value=3.8e-14  Score=128.61  Aligned_cols=164  Identities=8%  Similarity=-0.052  Sum_probs=150.4

Q ss_pred             HHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-c-CHH
Q psy1863         144 TFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQG-EVEQAEKMAEEACTADTYNSAAFVNLGNCAMAR-E-DYV  217 (425)
Q Consensus       144 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-~~~  217 (425)
                      +....+..++|+.++.+++   |.+..+|+..+.++...| .+++++.++++++..+|.+..+|+..+.++... + +++
T Consensus        63 ~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~  142 (349)
T 3q7a_A           63 IAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPV  142 (349)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCH
T ss_pred             HHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChH
Confidence            3444556678999999999   999999999999999999 599999999999999999999999999999988 8 899


Q ss_pred             HHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC------
Q psy1863         218 KGKELYVHALDNDATCIEALYNLGLAHKHLNEYS--------DSLECFHKLQAIVPSMPEVLYQIASLYEITGD------  283 (425)
Q Consensus       218 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------  283 (425)
                      +++.++.+++..+|.+..+|...+.+....|.++        ++++++.++++.+|.+..+|...+.++..++.      
T Consensus       143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~  222 (349)
T 3q7a_A          143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSR  222 (349)
T ss_dssp             HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchH
Confidence            9999999999999999999999999999998888        99999999999999999999999999999887      


Q ss_pred             -HHHHHHHHHHHHHhcCcchH--HHHHH
Q psy1863         284 -VEQASDVNENLLLEAVRNDA--LSQLH  308 (425)
Q Consensus       284 -~~~A~~~~~~~a~~~~p~~~--~~~l~  308 (425)
                       ++++++++.+ ++..+|+|.  |..+.
T Consensus       223 ~~~eELe~~~~-aI~~~P~n~SaW~Ylr  249 (349)
T 3q7a_A          223 SLQDELIYILK-SIHLIPHNVSAWNYLR  249 (349)
T ss_dssp             HHHHHHHHHHH-HHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHHhCCCCHHHHHHHH
Confidence             7899999999 999999988  65543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.63  E-value=2.7e-15  Score=119.58  Aligned_cols=103  Identities=13%  Similarity=0.078  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC-------cHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Q psy1863         200 SAAFVNLGNCAMAREDYVKGKELYVHALDNDAT-------CIE-----ALYNLGLAHKHLNEYSDSLECFHKLQAI----  263 (425)
Q Consensus       200 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~----  263 (425)
                      ...+.++|..++..|+|++|+..|+++++++|+       +..     +|.++|.++..+|++++|+.+|++++++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            356889999999999999999999999999998       443     9999999999999999999999999999    


Q ss_pred             ---CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         264 ---VPSMPEVL----YQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       264 ---~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                         +|++..+|    +++|.++..+|++++|+..|++ +++++|++.
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k-Alel~p~d~  136 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK-VVEMIEERK  136 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHCC
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH-HHhcCCCcH
Confidence               99999999    9999999999999999999999 999999887

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.63  E-value=1.6e-14  Score=118.26  Aligned_cols=129  Identities=11%  Similarity=0.046  Sum_probs=119.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM  211 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  211 (425)
                      ...+..+|..++..|++++|+..|++++   |..+.++..+|.++...|++++|+..+++++..+|.++.+++.+|.++.
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            4556889999999999999999999998   8889999999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhh
Q psy1863         212 AREDYVKGKELYVHALDNDATCIEALYNLGL--AHKHLNEYSDSLECFHKLQAI  263 (425)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~  263 (425)
                      ..|++++|+.+|++++..+|.+..++..++.  .+...|++++|+..+.++...
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            9999999999999999999999888855544  488899999999999987654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.63  E-value=2.9e-15  Score=122.70  Aligned_cols=117  Identities=19%  Similarity=0.184  Sum_probs=93.4

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy1863         165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTA------------------DTYNSAAFVNLGNCAMAREDYVKGKELYVHA  226 (425)
Q Consensus       165 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  226 (425)
                      .+..+..+|..++..|++++|+..|.+++..                  +|.+..++.++|.++..+|++++|+..++++
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3566777888888888888888888888877                  5666678888888888888888888888888


Q ss_pred             HhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHc
Q psy1863         227 LDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMP-EVLYQIASLYEIT  281 (425)
Q Consensus       227 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~  281 (425)
                      +.++|+++.+++.+|.++..+|++++|+..|++++.++|+++ .+...++.+....
T Consensus        90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~  145 (162)
T 3rkv_A           90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR  145 (162)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888877 5566666665544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.63  E-value=3.7e-15  Score=115.58  Aligned_cols=99  Identities=15%  Similarity=0.124  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC
Q psy1863         169 ATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLN  248 (425)
Q Consensus       169 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  248 (425)
                      ++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++.++|.++...|
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   99 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            45556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CHHHHHHHHHHHHhhCCCC
Q psy1863         249 EYSDSLECFHKLQAIVPSM  267 (425)
Q Consensus       249 ~~~~A~~~~~~al~~~p~~  267 (425)
                      ++++|+..|+++++.+|++
T Consensus       100 ~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A          100 NANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHHC-----
T ss_pred             CHHHHHHHHHHHHHhCcCC
Confidence            6666666666666665544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.62  E-value=1.3e-14  Score=119.09  Aligned_cols=114  Identities=23%  Similarity=0.169  Sum_probs=106.6

Q ss_pred             CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy1863         196 DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIA  275 (425)
Q Consensus       196 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  275 (425)
                      .+.++..++.+|.+++..|++++|+.+|++++.++|+++.++.++|.++...|++++|+.+|++++.++|+++.+++.+|
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh
Q psy1863         276 SLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE  310 (425)
Q Consensus       276 ~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~  310 (425)
                      .++..+|++++|+.+|++ +++++|+++  +...+..
T Consensus        87 ~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~~~l~  122 (164)
T 3sz7_A           87 LARFDMADYKGAKEAYEK-GIEAEGNGGSDAMKRGLE  122 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHH-HHHHHSSSCCHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHH-HHHhCCCchHHHHHHHHH
Confidence            999999999999999999 999999987  5555443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.62  E-value=1.1e-15  Score=129.68  Aligned_cols=145  Identities=13%  Similarity=0.016  Sum_probs=117.4

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcH----------
Q psy1863         165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCI----------  234 (425)
Q Consensus       165 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----------  234 (425)
                      .+......+......|++++|.+.+.......+.....+..+|.+++..|++++|+.+|++++...|.++          
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   82 (198)
T 2fbn_A            3 SSHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDK   82 (198)
T ss_dssp             -------------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHH
T ss_pred             CcccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence            3445566777888889999998888877777777788899999999999999999999999999998876          


Q ss_pred             ------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHH
Q psy1863         235 ------EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQ  306 (425)
Q Consensus       235 ------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~  306 (425)
                            .++.++|.++...|++++|+.++++++..+|+++.+++.+|.++..+|++++|+.+|++ +++++|+++  +..
T Consensus        83 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~  161 (198)
T 2fbn_A           83 KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK-AASLNPNNLDIRNS  161 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHSTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHH-HHHHCCCcHHHHHH
Confidence                  89999999999999999999999999999999999999999999999999999999999 999999988  666


Q ss_pred             HHHh
Q psy1863         307 LHRE  310 (425)
Q Consensus       307 l~~~  310 (425)
                      ++.+
T Consensus       162 l~~~  165 (198)
T 2fbn_A          162 YELC  165 (198)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6655

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.61  E-value=8.3e-15  Score=113.59  Aligned_cols=101  Identities=11%  Similarity=0.037  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy1863         202 AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT  281 (425)
Q Consensus       202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  281 (425)
                      .++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.++...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCcchH
Q psy1863         282 GDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       282 g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      |++++|+..|++ +++.+|++.
T Consensus        99 g~~~~A~~~~~~-al~~~P~~~  119 (121)
T 1hxi_A           99 HNANAALASLRA-WLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHH-HHC------
T ss_pred             CCHHHHHHHHHH-HHHhCcCCC
Confidence            999999999999 999998753

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.59  E-value=2.1e-14  Score=121.78  Aligned_cols=155  Identities=10%  Similarity=0.113  Sum_probs=127.1

Q ss_pred             HHHcCCHHHHHH---HHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhcC
Q psy1863         145 FLRMNDVSQAVD---VLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA------DTYNSAAFVNLGNCAMARED  215 (425)
Q Consensus       145 ~~~~g~~~~A~~---~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~  215 (425)
                      ++..|++++|..   .+....+..+.++..+|.++...|++++|+.++++++..      .|....++.++|.++...|+
T Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            356799999999   443322467889999999999999999999999999983      45556789999999999999


Q ss_pred             HHHHHHHHHHHHhc---Cc----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHHcC
Q psy1863         216 YVKGKELYVHALDN---DA----TCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP--SM----PEVLYQIASLYEITG  282 (425)
Q Consensus       216 ~~~A~~~~~~al~~---~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g  282 (425)
                      +++|+.++++++..   .+    ....++.++|.++...|++++|+.++++++...+  .+    ..++..+|.++...|
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            99999999999988   33    2356789999999999999999999999997643  22    235689999999999


Q ss_pred             CHHHHHHHHHHHHHhcCc
Q psy1863         283 DVEQASDVNENLLLEAVR  300 (425)
Q Consensus       283 ~~~~A~~~~~~~a~~~~p  300 (425)
                      ++++|..++++ ++++..
T Consensus       162 ~~~~A~~~~~~-al~~~~  178 (203)
T 3gw4_A          162 NLLEAQQHWLR-ARDIFA  178 (203)
T ss_dssp             CHHHHHHHHHH-HHHHHH
T ss_pred             CHHHHHHHHHH-HHHHHH
Confidence            99999999999 887643

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.59  E-value=4e-14  Score=112.02  Aligned_cols=107  Identities=8%  Similarity=0.063  Sum_probs=102.1

Q ss_pred             hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy1863         194 TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQ  273 (425)
Q Consensus       194 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  273 (425)
                      ..+|.++..+..+|.+++..|++++|+.+|++++..+|+++.++.++|.++...|++++|+..+++++..+|+++.+++.
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCcc
Q psy1863         274 IASLYEITGDVEQASDVNENLLLEAVRN  301 (425)
Q Consensus       274 la~~~~~~g~~~~A~~~~~~~a~~~~p~  301 (425)
                      +|.++...|++++|+..|++ +++..|+
T Consensus        83 l~~~~~~~~~~~~A~~~~~~-a~~~~p~  109 (137)
T 3q49_B           83 LGQCQLEMESYDEAIANLQR-AYSLAKE  109 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHH-HHHHChh
Confidence            99999999999999999999 9999887

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.59  E-value=4.5e-14  Score=110.43  Aligned_cols=116  Identities=15%  Similarity=0.163  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---HHHHHHH
Q psy1863         167 SAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS---AAFVNLGNCAMAREDYVKGKELYVHALDNDATC---IEALYNL  240 (425)
Q Consensus       167 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l  240 (425)
                      .+++.+|.+++..|++++|+..|+++++.+|+++   .+++.+|.++...|++++|+..|++++..+|++   +.+++.+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            3567788888888888888888888888888877   788888888888888888888888888888887   7888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy1863         241 GLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG  282 (425)
Q Consensus       241 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  282 (425)
                      |.++..+|++++|+..|++++...|+++.+......+-...+
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~  124 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL  124 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence            888888888888888888888888888777666555544433

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.58  E-value=2.1e-13  Score=123.09  Aligned_cols=163  Identities=9%  Similarity=0.014  Sum_probs=137.9

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS------AAFVNLGNCAMAREDYVKGKELYVHALDNDATC---  233 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---  233 (425)
                      +.....+...+..+...|++++|+..+.++++..|...      ..++.+|.++...|++++|+.++++++...+..   
T Consensus        72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  151 (293)
T 2qfc_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV  151 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence            34455667788999999999999999999999887765      336778999999999999999999999875433   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcch-
Q psy1863         234 ---IEALYNLGLAHKHLNEYSDSLECFHKLQ---AIVPSMP----EVLYQIASLYEITGDVEQASDVNENLLLEAVRND-  302 (425)
Q Consensus       234 ---~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~-  302 (425)
                         ..++.++|.+|...|++++|+.+|++++   ...|++.    .+++++|.+|..+|++++|+.++++ +++..++. 
T Consensus       152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~k-al~~~~~~~  230 (293)
T 2qfc_A          152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK-AIEISCRIN  230 (293)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHH-HHHHHHhcC
Confidence               6689999999999999999999999999   5566543    6899999999999999999999999 99876541 


Q ss_pred             -----H--HHHHHHh-----hHHHH-HHHHHHHHhhc
Q psy1863         303 -----A--LSQLHRE-----MKHEA-EKCILTSAKLI  326 (425)
Q Consensus       303 -----~--~~~l~~~-----~~~~A-~~~~~~a~~~~  326 (425)
                           .  +.++|.+     ++++| ..++++++.+.
T Consensus       231 ~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence                 2  6777777     78899 78899998765

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=4.5e-14  Score=113.06  Aligned_cols=117  Identities=16%  Similarity=0.169  Sum_probs=95.7

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN---SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYN  239 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  239 (425)
                      +..+..++.+|..++..|++++|+..|+++++.+|++   ..++.++|.++...|++++|+.++++++..+|+++.++++
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  104 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR  104 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence            5567778888888888888888888888888888876   7778888888888888888888888888888888888888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy1863         240 LGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE  279 (425)
Q Consensus       240 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  279 (425)
                      +|.++...|++++|+.+|++++..+|++..++..++.+..
T Consensus       105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A          105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence            8888888888888888888888888888887777776643

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.58  E-value=3e-14  Score=111.28  Aligned_cols=118  Identities=19%  Similarity=0.204  Sum_probs=106.2

Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc-------HHH
Q psy1863         164 MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC-------IEA  236 (425)
Q Consensus       164 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~  236 (425)
                      ..+.++..+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+.++++++...|.+       +.+
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            4567889999999999999999999999999999999999999999999999999999999999998776       889


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy1863         237 LYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG  282 (425)
Q Consensus       237 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  282 (425)
                      +.++|.++...|++++|+.+|++++...| ++.....++.+....+
T Consensus        82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998 6888888887765543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.58  E-value=8.3e-16  Score=148.35  Aligned_cols=137  Identities=15%  Similarity=0.134  Sum_probs=123.8

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q psy1863         165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAH  244 (425)
Q Consensus       165 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~  244 (425)
                      .+.++..+|.++...|++++|+..|+++++.+|++..++.++|.++..+|++++|+..|+++++++|+++.+++++|.+|
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   84 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   84 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34566778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhcCcch
Q psy1863         245 KHLNEYSDSLECFHKLQAIVPSMPEVLYQIASL--YEITGDVEQASDVNE-----------NLLLEAVRND  302 (425)
Q Consensus       245 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~~a~~~~p~~  302 (425)
                      ..+|++++|+..|+++++++|++..++..++.+  +...|++++|+..++           + ++...|+.
T Consensus        85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-al~~~~~~  154 (477)
T 1wao_1           85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIE-SMTIEDEY  154 (477)
T ss_dssp             HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTS-SCCCCTTC
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhh-hccccccc
Confidence            999999999999999999999999999999998  888999999999999           7 77776654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.58  E-value=4.3e-14  Score=110.90  Aligned_cols=118  Identities=20%  Similarity=0.145  Sum_probs=111.8

Q ss_pred             chhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy1863         132 SLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGN  208 (425)
Q Consensus       132 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  208 (425)
                      +.....+..+|..+...|++++|+..|++++   |.++.++..+|.++...|++++|+.+++++++.+|.++.++..+|.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~   92 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA   92 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            4456677899999999999999999999998   8889999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC
Q psy1863         209 CAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNE  249 (425)
Q Consensus       209 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  249 (425)
                      ++...|++++|+.+|++++..+|.+..++..++.++..+|+
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999988774

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.57  E-value=6.1e-14  Score=109.46  Aligned_cols=117  Identities=19%  Similarity=0.133  Sum_probs=111.4

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy1863         134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCA  210 (425)
Q Consensus       134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (425)
                      ....++.+|..+...|++++|+..|++++   |..+.++..+|.++...|++++|+..+++++..+|.++.++..+|.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            35566889999999999999999999998   888999999999999999999999999999999999999999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCH
Q psy1863         211 MAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEY  250 (425)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  250 (425)
                      ...|++++|+.+|++++..+|+++.++..+|.++...|++
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999998875

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.57  E-value=4.9e-14  Score=115.28  Aligned_cols=103  Identities=17%  Similarity=0.183  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------------------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863         200 SAAFVNLGNCAMAREDYVKGKELYVHALDN------------------DATCIEALYNLGLAHKHLNEYSDSLECFHKLQ  261 (425)
Q Consensus       200 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  261 (425)
                      +..+...|..++..|+|++|+..|++++..                  +|....++.++|.++..+|++++|+..+++++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            467899999999999999999999999999                  77778999999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         262 AIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       262 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      .++|+++.+++.+|.++..+|++++|+..|++ ++.++|+++
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~-al~l~p~~~  131 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAAWKLDEAEEDLKL-LLRNHPAAA  131 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCGGGH
T ss_pred             hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHH-HHhcCCCCH
Confidence            99999999999999999999999999999999 999999987

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.56  E-value=1.3e-13  Score=105.44  Aligned_cols=110  Identities=18%  Similarity=0.134  Sum_probs=103.8

Q ss_pred             CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy1863         199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLY  278 (425)
Q Consensus       199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  278 (425)
                      .+..++.+|.++...|++++|+.+|++++..+|+++.++..+|.++...|++++|+..+++++...|+++.++..+|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhcCcchH--HHHHHH
Q psy1863         279 EITGDVEQASDVNENLLLEAVRNDA--LSQLHR  309 (425)
Q Consensus       279 ~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~  309 (425)
                      ...|++++|..++++ +++.+|+++  +..++.
T Consensus        83 ~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~l~~  114 (118)
T 1elw_A           83 EFLNRFEEAKRTYEE-GLKHEANNPQLKEGLQN  114 (118)
T ss_dssp             HHTTCHHHHHHHHHH-HHTTCTTCHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHH-HHHcCCCCHHHHHHHHH
Confidence            999999999999999 999999988  555543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.56  E-value=3.3e-15  Score=137.72  Aligned_cols=140  Identities=14%  Similarity=0.157  Sum_probs=82.9

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHHhcCHHHHHHHHHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS-----------------AAFVNLGNCAMAREDYVKGKELYVH  225 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~  225 (425)
                      +..+..+..+|..++..|++++|+..|++++...|.+.                 .+++++|.++..+|++++|+.+|++
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~  255 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI  255 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            44567788888888888889999998988888888766                 3778888888888888888888888


Q ss_pred             HHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         226 ALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLY-EITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       226 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      ++.++|+++.+++++|.+|..+|++++|+.+|+++++++|++..++..++.+. ...+..+++...|.+ ++...|+++
T Consensus       256 al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~-~l~~~p~~~  333 (338)
T 2if4_A          256 VLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKG-IFKGKDEGG  333 (338)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCCCCC
Confidence            88888888888888888888888888888888888888888888888887773 445667777778888 777777654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.56  E-value=7.8e-15  Score=128.91  Aligned_cols=189  Identities=8%  Similarity=-0.017  Sum_probs=156.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHhcCCCCHH-------
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNL-------SFIYFLQGEVEQAEKMAEEACTADTYNSA-------  201 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l-------g~~~~~~g~~~~A~~~~~~al~~~p~~~~-------  201 (425)
                      +..|.-+ ..+++..|...|.+++   |..+++|..+       +.++...++..+++..+.+.+.+.|....       
T Consensus        11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g   89 (282)
T 4f3v_A           11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG   89 (282)
T ss_dssp             HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred             HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence            4445554 5899999999999998   9999999999       89999999999999999999998765443       


Q ss_pred             --------------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy1863         202 --------------AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM  267 (425)
Q Consensus       202 --------------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  267 (425)
                                    +...++.++...|+|++|...|..++...|.+. +.+.+|.++.+.|++++|+..|+.+....+..
T Consensus        90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~  168 (282)
T 4f3v_A           90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF  168 (282)
T ss_dssp             TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH
T ss_pred             cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc
Confidence                          344578889999999999999999998899888 99999999999999999999998776543221


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--cc-hH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchh
Q psy1863         268 --PEVLYQIASLYEITGDVEQASDVNENLLLEAV--RN-DA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIE  331 (425)
Q Consensus       268 --~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~--p~-~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~  331 (425)
                        ..+++.+|.++..+|++++|+.+|++ +....  |. .+  +..+|.+     +.++|...|++++...|. ..
T Consensus       169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~-a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~  242 (282)
T 4f3v_A          169 LAGAAGVAHGVAAANLALFTEAERRLTE-ANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PK  242 (282)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HH
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHH-HhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HH
Confidence              35899999999999999999999999 87543  54 33  6666666     889999999999999998 44

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.55  E-value=2.1e-14  Score=108.97  Aligned_cols=104  Identities=14%  Similarity=0.206  Sum_probs=57.7

Q ss_pred             CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHH
Q psy1863         197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS--MPEVLYQI  274 (425)
Q Consensus       197 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l  274 (425)
                      |+++.++..+|.++...|++++|+.+|+++++.+|.+..++.++|.++...|++++|+.+++++++..|.  +..++..+
T Consensus         3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l   82 (112)
T 2kck_A            3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK   82 (112)
T ss_dssp             CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence            4444555555555555555555555555555555555555555555555555555555555555555555  55555555


Q ss_pred             HHHHHHc-CCHHHHHHHHHHHHHhcCcc
Q psy1863         275 ASLYEIT-GDVEQASDVNENLLLEAVRN  301 (425)
Q Consensus       275 a~~~~~~-g~~~~A~~~~~~~a~~~~p~  301 (425)
                      |.++... |++++|+.++++ ++...|+
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~-~~~~~p~  109 (112)
T 2kck_A           83 ADALRYIEGKEVEAEIAEAR-AKLEHHH  109 (112)
T ss_dssp             HHHHTTCSSCSHHHHHHHHH-HGGGCCC
T ss_pred             HHHHHHHhCCHHHHHHHHHH-HhhcccC
Confidence            5555555 555555555555 5555544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.55  E-value=1e-13  Score=136.08  Aligned_cols=163  Identities=8%  Similarity=-0.056  Sum_probs=152.0

Q ss_pred             HcCC-HHHHHHHHHhcc---cchHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy1863         147 RMND-VSQAVDVLKSCD---EMTSSAATNLSFIYFLQGE----------VEQAEKMAEEACTADTYNSAAFVNLGNCAMA  212 (425)
Q Consensus       147 ~~g~-~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  212 (425)
                      ..|+ .++|++.+.+++   |.+..+|+..+.++...|+          +++++..++++++.+|.+..+|+..+.++..
T Consensus        40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~  119 (567)
T 1dce_A           40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR  119 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            4444 457899999999   9999999999999999998          9999999999999999999999999999999


Q ss_pred             hc--CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------
Q psy1863         213 RE--DYVKGKELYVHALDNDATCIEALYNLGLAHKHLN-EYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT--------  281 (425)
Q Consensus       213 ~g--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------  281 (425)
                      .|  ++++++.++.++++.+|.+..+|.+.+.+....| .++++++++.++++.+|.+..+|..++.++..+        
T Consensus       120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~  199 (567)
T 1dce_A          120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP  199 (567)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence            99  7799999999999999999999999999999999 999999999999999999999999999999885        


Q ss_pred             ------CCHHHHHHHHHHHHHhcCcchH--HHHHHHh
Q psy1863         282 ------GDVEQASDVNENLLLEAVRNDA--LSQLHRE  310 (425)
Q Consensus       282 ------g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~  310 (425)
                            +.++++++++.+ ++..+|++.  |..++.+
T Consensus       200 ~~~~~~~~~~eel~~~~~-ai~~~P~~~saW~y~~~l  235 (567)
T 1dce_A          200 QGRLPENVLLKELELVQN-AFFTDPNDQSAWFYHRWL  235 (567)
T ss_dssp             CCSSCHHHHHHHHHHHHH-HHHHCSSCSHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHH-HHhhCCCCccHHHHHHHH
Confidence                  567999999999 999999988  7777666

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.54  E-value=6.8e-15  Score=141.35  Aligned_cols=132  Identities=18%  Similarity=0.189  Sum_probs=120.1

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---------------HHHHHHHHH
Q psy1863         178 LQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC---------------IEALYNLGL  242 (425)
Q Consensus       178 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~la~  242 (425)
                      ..+++++|+..++.++...|.....+.++|.+++..|+|++|+..|++++.++|.+               ..++.++|.
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  325 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM  325 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence            34567788888888888889999999999999999999999999999999999988               689999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh
Q psy1863         243 AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE  310 (425)
Q Consensus       243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~  310 (425)
                      +|.++|++++|+.+|++++.++|+++.+++++|.+|..+|++++|+..|++ +++++|++.  +..++.+
T Consensus       326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~-al~l~P~~~~a~~~l~~~  394 (457)
T 1kt0_A          326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEK-VLEVNPQNKAARLQISMC  394 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHTTC----CHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHH-HHHhCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999 999999998  7777766

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.54  E-value=4.3e-14  Score=107.18  Aligned_cols=106  Identities=9%  Similarity=0.026  Sum_probs=100.8

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC--cHHHHHHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDAT--CIEALYNL  240 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~l  240 (425)
                      |.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+.+|+++++.+|.  +..++.++
T Consensus         3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l   82 (112)
T 2kck_A            3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK   82 (112)
T ss_dssp             CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence            4567788999999999999999999999999999999999999999999999999999999999999999  99999999


Q ss_pred             HHHHHHc-CCHHHHHHHHHHHHhhCCCCH
Q psy1863         241 GLAHKHL-NEYSDSLECFHKLQAIVPSMP  268 (425)
Q Consensus       241 a~~~~~~-g~~~~A~~~~~~al~~~p~~~  268 (425)
                      |.++... |++++|+.++++++...|.++
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           83 ADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            9999999 999999999999999998753

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=3.3e-13  Score=107.95  Aligned_cols=113  Identities=19%  Similarity=0.131  Sum_probs=106.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy1863         195 ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC---IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVL  271 (425)
Q Consensus       195 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  271 (425)
                      ..|.+...++.+|..++..|++++|+.+|++++..+|++   ..++.++|.++...|++++|+..+++++..+|+++.++
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  102 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL  102 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence            457789999999999999999999999999999999998   89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHH
Q psy1863         272 YQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLH  308 (425)
Q Consensus       272 ~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~  308 (425)
                      +.+|.++...|++++|+.+|++ ++..+|+++  +..++
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~l~  140 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQR-CVSLEPKNKVFQEALR  140 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHH-HHHHCSSCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHH-HHHcCCCcHHHHHHHH
Confidence            9999999999999999999999 999999987  44443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.53  E-value=4.3e-13  Score=103.57  Aligned_cols=114  Identities=32%  Similarity=0.463  Sum_probs=104.2

Q ss_pred             cCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy1863         195 ADTYN-SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQ  273 (425)
Q Consensus       195 ~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  273 (425)
                      .+|.. ..+++.+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   82 (125)
T 1na0_A            3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN   82 (125)
T ss_dssp             ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence            34555 67899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHH
Q psy1863         274 IASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHR  309 (425)
Q Consensus       274 la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~  309 (425)
                      +|.++...|++++|..++++ ++...|+++  +..++.
T Consensus        83 la~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~l~~  119 (125)
T 1na0_A           83 LGNAYYKQGDYDEAIEYYQK-ALELDPNNAEAKQNLGN  119 (125)
T ss_dssp             HHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHH-HHHhCCCcHHHHHHHHH
Confidence            99999999999999999999 999999887  555554

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.53  E-value=1e-13  Score=129.05  Aligned_cols=125  Identities=19%  Similarity=0.277  Sum_probs=112.7

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q psy1863         165 TSSAATNLSFIYFLQGEVEQAEKMAEEACT----------------ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALD  228 (425)
Q Consensus       165 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  228 (425)
                      .+..+..+|..++..|++++|+..|+++++                .+|.+..++.++|.++..+|++++|+.+++++++
T Consensus       222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  301 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  301 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            345677888888888888888888888887                7778889999999999999999999999999999


Q ss_pred             cCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy1863         229 NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASD  289 (425)
Q Consensus       229 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  289 (425)
                      ++|+++.+++++|.+|..+|++++|+..|+++++++|++..++..++.++..+++.+++..
T Consensus       302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999888887754

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.52  E-value=2.8e-13  Score=122.29  Aligned_cols=159  Identities=9%  Similarity=0.010  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc------HH
Q psy1863         168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSA------AFVNLGNCAMAREDYVKGKELYVHALDNDATC------IE  235 (425)
Q Consensus       168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~  235 (425)
                      .+...+..+...|++++|+..+++++...+..+.      .+..+|.++...|++++|+.+|++++...+..      ..
T Consensus        77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  156 (293)
T 3u3w_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence            3445578889999999999999999998877765      24468999999999999999999999964432      44


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcch------
Q psy1863         236 ALYNLGLAHKHLNEYSDSLECFHKLQAIV-------PSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRND------  302 (425)
Q Consensus       236 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~------  302 (425)
                      ++.++|.+|...|++++|+.+|++++...       +....+++++|.+|..+|++++|+.++++ ++++.+..      
T Consensus       157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~-al~~~~~~~~~~~~  235 (293)
T 3u3w_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK-AIEISCRINSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHTTBCTTH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHcCcHHHH
Confidence            79999999999999999999999999532       12345889999999999999999999999 99886543      


Q ss_pred             H--HHHHHHh------hHHHHHHHHHHHHhhcC
Q psy1863         303 A--LSQLHRE------MKHEAEKCILTSAKLIA  327 (425)
Q Consensus       303 ~--~~~l~~~------~~~~A~~~~~~a~~~~~  327 (425)
                      .  +..+|.+      ++++|..+|++++.+..
T Consensus       236 ~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~  268 (293)
T 3u3w_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            2  7778877      35999999999998753

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.51  E-value=6.6e-14  Score=111.31  Aligned_cols=91  Identities=15%  Similarity=0.179  Sum_probs=65.8

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHc
Q psy1863         178 LQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDY----------VKGKELYVHALDNDATCIEALYNLGLAHKHL  247 (425)
Q Consensus       178 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  247 (425)
                      +.+.|++|+..++++++++|+++.+|+++|.++...+++          ++|+..|+++++++|++..+|+++|.+|..+
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            345677788888888888888888888888888777664          4777777777777777777777777777766


Q ss_pred             C-----------CHHHHHHHHHHHHhhCCCCH
Q psy1863         248 N-----------EYSDSLECFHKLQAIVPSMP  268 (425)
Q Consensus       248 g-----------~~~~A~~~~~~al~~~p~~~  268 (425)
                      |           ++++|+.+|+++++++|++.
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence            4           56666666666666666654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.51  E-value=1.2e-12  Score=118.74  Aligned_cols=219  Identities=12%  Similarity=-0.015  Sum_probs=182.5

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCcCcHHHHHHHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE-DYVKGKELYVHALDNDATCIEALYNLG  241 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~la  241 (425)
                      +....++..+..+....+..++|+..+.+++.++|++..+|+..+.++...| .+++++.++.+++..+|.+..+|+..+
T Consensus        51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~  130 (349)
T 3q7a_A           51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRL  130 (349)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            4445666666666677777789999999999999999999999999999999 599999999999999999999999999


Q ss_pred             HHHHHc-C-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhcCcchH--HHHHHH
Q psy1863         242 LAHKHL-N-EYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVE--------QASDVNENLLLEAVRNDA--LSQLHR  309 (425)
Q Consensus       242 ~~~~~~-g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~~a~~~~p~~~--~~~l~~  309 (425)
                      .++... + ++++++.++.+++..+|.+..+|...+.+....|.++        ++++++.+ +++.+|.|.  |...+.
T Consensus       131 wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k-~I~~dp~N~SAW~~R~~  209 (349)
T 3q7a_A          131 LLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNE-MLRVDGRNNSAWGWRWY  209 (349)
T ss_dssp             HHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-HHHHCTTCHHHHHHHHH
T ss_pred             HHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHH-HHHhCCCCHHHHHHHHH
Confidence            999998 8 9999999999999999999999999999999988887        99999999 999999988  777777


Q ss_pred             h-----h-------HHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHh------------------------HHhhch--
Q psy1863         310 E-----M-------KHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSI------------------------RNSAHS--  351 (425)
Q Consensus       310 ~-----~-------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~--  351 (425)
                      +     .       ++++++++.+++..+|.+...+..........+.                        ......  
T Consensus       210 lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (349)
T 3q7a_A          210 LRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMP  289 (349)
T ss_dssp             HHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCC
T ss_pred             HHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHH
Confidence            6     2       6899999999999999999988765422211110                        110000  


Q ss_pred             ---------hhhcHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy1863         352 ---------SLAQDLEINKAVTFLRMNDVSQAVDVLKSCD  382 (425)
Q Consensus       352 ---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  382 (425)
                               .-..-+.-.++.+|...|+.++|+++++...
T Consensus       290 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~  329 (349)
T 3q7a_A          290 SDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS  329 (349)
T ss_dssp             C-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence                     0112334458999999999999999999984

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.51  E-value=7e-13  Score=112.24  Aligned_cols=168  Identities=13%  Similarity=0.132  Sum_probs=128.6

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh------cCcCcHHHHHHHHHHHHHcCC
Q psy1863         176 YFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALD------NDATCIEALYNLGLAHKHLNE  249 (425)
Q Consensus       176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------~~~~~~~~~~~la~~~~~~g~  249 (425)
                      .+..|++++|...++......+....++..+|.++...|++++|+.++++++.      ..|....++.++|.++...|+
T Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            35689999999966555543346778999999999999999999999999998      345567889999999999999


Q ss_pred             HHHHHHHHHHHHhh---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHH
Q psy1863         250 YSDSLECFHKLQAI---VPSM----PEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEKCILTS  322 (425)
Q Consensus       250 ~~~A~~~~~~al~~---~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~~~~l~~~~~~~A~~~~~~a  322 (425)
                      +++|+.++++++..   .+++    ..++.++|.++...|++++|+.++++ ++...+..                    
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~~~~--------------------  140 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK-SLVYAQQA--------------------  140 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHHHHT--------------------
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHhc--------------------
Confidence            99999999999988   4433    45789999999999999999999999 66432110                    


Q ss_pred             HhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcc
Q psy1863         323 AKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT  390 (425)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~  390 (425)
                          +.                      .......+..+|.++...|++++|+..++++........+
T Consensus       141 ----~~----------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  182 (203)
T 3gw4_A          141 ----DD----------------------QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELED  182 (203)
T ss_dssp             ----TC----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ----cc----------------------hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC
Confidence                00                      0001234567899999999999999999999765554433

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.51  E-value=3.5e-13  Score=105.26  Aligned_cols=102  Identities=16%  Similarity=0.161  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q psy1863         201 AAFVNLGNCAMAREDYVKGKELYVHALDNDATCI---EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM---PEVLYQI  274 (425)
Q Consensus       201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l  274 (425)
                      .+++.+|.+++..|++++|+..|++++..+|+++   .+++.+|.++...|++++|+..|++++...|++   +.+++.+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            3478899999999999999999999999999887   899999999999999999999999999999999   8899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         275 ASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       275 a~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      |.++..+|++++|+..|++ ++...|+++
T Consensus        83 a~~~~~~g~~~~A~~~~~~-~~~~~p~~~  110 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQ-VATQYPGSD  110 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHH-HHHHSTTSH
T ss_pred             HHHHHHcCCHHHHHHHHHH-HHHHCCCCh
Confidence            9999999999999999999 999999988

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.50  E-value=2.8e-14  Score=109.84  Aligned_cols=95  Identities=15%  Similarity=0.153  Sum_probs=72.4

Q ss_pred             HcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHH
Q psy1863         178 LQGEVEQAEKMAEEACTA---DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSL  254 (425)
Q Consensus       178 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~  254 (425)
                      .+|++++|+.+|+++++.   +|+++.++.++|.++...|++++|+.+|+++++.+|+++.++.++|.++...|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            357778888888888887   57777788888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHhhCCCCHHHHH
Q psy1863         255 ECFHKLQAIVPSMPEVLY  272 (425)
Q Consensus       255 ~~~~~al~~~p~~~~~~~  272 (425)
                      ..+++++...|+++.+..
T Consensus        82 ~~~~~al~~~p~~~~~~~   99 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQS   99 (117)
T ss_dssp             HHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHH
Confidence            888888888887776543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.50  E-value=1.6e-12  Score=127.54  Aligned_cols=160  Identities=7%  Similarity=-0.046  Sum_probs=147.6

Q ss_pred             HcCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH
Q psy1863         178 LQGEV-EQAEKMAEEACTADTYNSAAFVNLGNCAMARED----------YVKGKELYVHALDNDATCIEALYNLGLAHKH  246 (425)
Q Consensus       178 ~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  246 (425)
                      ..|++ ++|+..+.+++..+|++..+|+..+.++...|+          +++++..+++++..+|.+..+|++.+.++..
T Consensus        40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~  119 (567)
T 1dce_A           40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR  119 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34444 678999999999999999999999999999998          9999999999999999999999999999999


Q ss_pred             cC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCcchH--HHHHHHh-----------
Q psy1863         247 LN--EYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG-DVEQASDVNENLLLEAVRNDA--LSQLHRE-----------  310 (425)
Q Consensus       247 ~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----------  310 (425)
                      .|  +++++++++.++++.+|.+..+|...+.+....| .++++++++.+ +++.+|++.  |...+.+           
T Consensus       120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~-~I~~~p~n~saW~~r~~ll~~l~~~~~~~  198 (567)
T 1dce_A          120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDS-LITRNFSNYSSWHYRSCLLPQLHPQPDSG  198 (567)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHT-TTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred             cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHH-HHHHCCCCccHHHHHHHHHHhhccccccc
Confidence            99  7799999999999999999999999999999999 99999999999 999999988  6666555           


Q ss_pred             --------hHHHHHHHHHHHHhhcCCchhhHhhchH
Q psy1863         311 --------MKHEAEKCILTSAKLIAPSIEDNFSNGY  338 (425)
Q Consensus       311 --------~~~~A~~~~~~a~~~~~~~~~~~~~~~~  338 (425)
                              .++++++++.+++..+|.+...|...++
T Consensus       199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~  234 (567)
T 1dce_A          199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRW  234 (567)
T ss_dssp             SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence                    2589999999999999999998887763

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.49  E-value=2.1e-13  Score=110.65  Aligned_cols=132  Identities=23%  Similarity=0.284  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc------
Q psy1863         166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN------SAAFVNLGNCAMAREDYVKGKELYVHALDNDATC------  233 (425)
Q Consensus       166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------  233 (425)
                      +.++..+|.++...|++++|+.++++++...+..      ..++..+|.++...|++++|+.++++++...+..      
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            3455666666666666666666666666554321      1356666666666667777766666666653321      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy1863         234 IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS------MPEVLYQIASLYEITGDVEQASDVNENLLLEA  298 (425)
Q Consensus       234 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~  298 (425)
                      ..++.++|.++...|++++|+.++++++...+.      ...++..+|.++...|++++|+.++++ ++++
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-a~~~  158 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK-HLEI  158 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH-HHHH
Confidence            446667777777777777777777777655321      234566777777777777777777777 6654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.49  E-value=7.6e-13  Score=126.11  Aligned_cols=159  Identities=9%  Similarity=0.052  Sum_probs=134.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHH
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD------TYNSAAF  203 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~  203 (425)
                      ..+|.+|...|++++|++++.+++         .....+...+|.++...|++++|+.++++++...      +....++
T Consensus        59 ~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  138 (434)
T 4b4t_Q           59 LELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLS  138 (434)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence            678999999999999999999988         1223466778999999999999999999998764      3336789


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhc------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CC----HHH
Q psy1863         204 VNLGNCAMAREDYVKGKELYVHALDN------DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP---SM----PEV  270 (425)
Q Consensus       204 ~~la~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~----~~~  270 (425)
                      .++|.++...|+|++|+.++++++..      .|....++..+|.+|...|++++|...+++++...+   +.    ...
T Consensus       139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  218 (434)
T 4b4t_Q          139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL  218 (434)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence            99999999999999999999999875      234477999999999999999999999999987743   22    246


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy1863         271 LYQIASLYEITGDVEQASDVNENLLLEA  298 (425)
Q Consensus       271 ~~~la~~~~~~g~~~~A~~~~~~~a~~~  298 (425)
                      +..+|.++...|++++|..+|.+ +++.
T Consensus       219 ~~~~g~~~~~~~~y~~A~~~~~~-a~~~  245 (434)
T 4b4t_Q          219 DLMSGILHCEDKDYKTAFSYFFE-SFES  245 (434)
T ss_dssp             HHHHHHHTTSSSCHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHH-HHHH
Confidence            77888999999999999999999 8765

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.48  E-value=2.3e-13  Score=126.42  Aligned_cols=172  Identities=10%  Similarity=0.032  Sum_probs=133.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q psy1863         136 DLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARED  215 (425)
Q Consensus       136 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  215 (425)
                      ..+..+|..+...|+|++|+.+|.++     ..|..+|.++..+|++++|++.++++     +++.+|...+.++...|+
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~e  192 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKE  192 (449)
T ss_dssp             --------------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCc
Confidence            36789999999999999999999987     57889999999999999999999999     478999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHH
Q psy1863         216 YVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI--TGDVEQASDVNEN  293 (425)
Q Consensus       216 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~  293 (425)
                      ++.|..+... +..+|+.   ...+..+|.+.|++++|+.++++++.+++....++..+|.+|.+  .++..+.++.|..
T Consensus       193 f~lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~  268 (449)
T 1b89_A          193 FRLAQMCGLH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS  268 (449)
T ss_dssp             HHHHHHTTTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred             HHHHHHHHHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            9999888776 3355554   44688999999999999999999999999999999999998876  4677788888887


Q ss_pred             HHHhcCc-----chH--HHHHHHh-----hHHHHHHHHHHH
Q psy1863         294 LLLEAVR-----NDA--LSQLHRE-----MKHEAEKCILTS  322 (425)
Q Consensus       294 ~a~~~~p-----~~~--~~~l~~~-----~~~~A~~~~~~a  322 (425)
                       .+.+.|     ++.  |..+..+     +++.|...+-+.
T Consensus       269 -~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h  308 (449)
T 1b89_A          269 -RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH  308 (449)
T ss_dssp             -TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             -HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence             777766     444  7777666     777787755443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.48  E-value=5.5e-13  Score=104.00  Aligned_cols=112  Identities=17%  Similarity=0.149  Sum_probs=101.9

Q ss_pred             CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHH
Q psy1863         198 YNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM-------PEV  270 (425)
Q Consensus       198 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~  270 (425)
                      ..+..+..+|.++...|++++|+.+|++++..+|.++.++.++|.++...|++++|+.++++++...|.+       +.+
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            3467789999999999999999999999999999999999999999999999999999999999998876       889


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH-HHHHHHh
Q psy1863         271 LYQIASLYEITGDVEQASDVNENLLLEAVRNDA-LSQLHRE  310 (425)
Q Consensus       271 ~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~-~~~l~~~  310 (425)
                      ++.+|.++...|++++|+.+|++ +++..|+.. ...++.+
T Consensus        82 ~~~la~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~l~~~  121 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIHFYNK-SLAEHRTPDVLKKCQQA  121 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH-HHHHCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHH-HHHhCCCHHHHHHHHHH
Confidence            99999999999999999999999 999988543 5555443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.47  E-value=8.7e-13  Score=106.89  Aligned_cols=133  Identities=20%  Similarity=0.131  Sum_probs=115.5

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---c------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----
Q psy1863         134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---E------MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN-----  199 (425)
Q Consensus       134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----  199 (425)
                      ...++..+|..+...|++++|+..+++++   +      ....++..+|.++...|++++|+.++++++...+..     
T Consensus         8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~   87 (164)
T 3ro3_A            8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence            45667899999999999999999999998   1      223588999999999999999999999999876443     


Q ss_pred             -HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy1863         200 -SAAFVNLGNCAMAREDYVKGKELYVHALDNDA------TCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS  266 (425)
Q Consensus       200 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  266 (425)
                       ..++.++|.++...|++++|+.++++++...+      ....++..+|.++...|++++|+.++++++++...
T Consensus        88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A           88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence             56789999999999999999999999998732      23668899999999999999999999999987543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.47  E-value=3.4e-12  Score=113.59  Aligned_cols=160  Identities=16%  Similarity=0.094  Sum_probs=131.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcc---c--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHH--
Q psy1863         138 EINKAVTFLRMNDVSQAVDVLKSCD---E--MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTY----NSAAFVNL--  206 (425)
Q Consensus       138 ~~~~a~~~~~~g~~~~A~~~~~~~~---~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l--  206 (425)
                      .+.+|.++...|++++|+.++.+.+   +  ...+++..++.++..+|+.+.|.+.++++.+.+|+    +..+...+  
T Consensus       103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Lae  182 (310)
T 3mv2_B          103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAE  182 (310)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHH
Confidence            4678899999999999999999987   3  67888999999999999999999999999888883    22333444  


Q ss_pred             HHHHHHhc--CHHHHHHHHHHHHhcCcC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------CCCCHHHHH
Q psy1863         207 GNCAMARE--DYVKGKELYVHALDNDAT--CIEALYNLGLAHKHLNEYSDSLECFHKLQAI----------VPSMPEVLY  272 (425)
Q Consensus       207 a~~~~~~g--~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~  272 (425)
                      |.+.+..|  ++.+|..+|+++....|+  .+..+++   ++.++|++++|...++.+++.          +|+++.++.
T Consensus       183 a~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La  259 (310)
T 3mv2_B          183 SYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA  259 (310)
T ss_dssp             HHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence            54466666  899999999998888887  3444444   889999999999999977776          488899998


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         273 QIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       273 ~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      +++.+...+|+  +|.+++++ +.+.+|+++
T Consensus       260 N~i~l~~~lgk--~a~~l~~q-L~~~~P~hp  287 (310)
T 3mv2_B          260 NQITLALMQGL--DTEDLTNQ-LVKLDHEHA  287 (310)
T ss_dssp             HHHHHHHHTTC--TTHHHHHH-HHHTTCCCH
T ss_pred             HHHHHHHHhCh--HHHHHHHH-HHHhCCCCh
Confidence            99888888897  88899999 999999999

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.46  E-value=7.6e-14  Score=128.57  Aligned_cols=135  Identities=9%  Similarity=0.018  Sum_probs=88.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTS-----------------SAATNLSFIYFLQGEVEQAEKMAEEACT  194 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~-----------------~~~~~lg~~~~~~g~~~~A~~~~~~al~  194 (425)
                      ...+..+|..++..|++++|+..|++++   |...                 .+++++|.++..+|++++|+.+|+++++
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~  258 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT  258 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4456788999999999999999999998   5554                 3899999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy1863         195 ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLA-HKHLNEYSDSLECFHKLQAIVPSMPE  269 (425)
Q Consensus       195 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~  269 (425)
                      .+|++..+++++|.++..+|++++|+.+|+++++++|++..++..++.+ ....+..+++...|.+++...|.++.
T Consensus       259 ~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          259 EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence            9999999999999999999999999999999999999999999999998 44567888999999999999987653

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.46  E-value=2.2e-13  Score=108.29  Aligned_cols=92  Identities=11%  Similarity=0.157  Sum_probs=86.4

Q ss_pred             HHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy1863         211 MAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEY----------SDSLECFHKLQAIVPSMPEVLYQIASLYEI  280 (425)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~  280 (425)
                      .+.+.|++|+..++++++++|+++.+|+++|.++...+++          ++|+..|+++++++|++..+|+++|.+|..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999875          599999999999999999999999999998


Q ss_pred             cC-----------CHHHHHHHHHHHHHhcCcchH
Q psy1863         281 TG-----------DVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       281 ~g-----------~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      +|           ++++|+.+|++ |++++|++.
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~k-Al~l~P~~~  125 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQ-AVDEQPDNT  125 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHH-HHHHCTTCH
T ss_pred             hcccCcchhhhhccHHHHHHHHHH-HHHhCCCCH
Confidence            85           89999999999 999999987

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.44  E-value=5.7e-14  Score=135.47  Aligned_cols=129  Identities=12%  Similarity=0.046  Sum_probs=116.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARED  215 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  215 (425)
                      ..+|..+...|++++|+..|++++   |..+.++.++|.++..+|++++|+..++++++++|+++.+++++|.++..+|+
T Consensus        10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK   89 (477)
T ss_dssp             SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            456788899999999999999999   88999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcCcHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhhCCCC
Q psy1863         216 YVKGKELYVHALDNDATCIEALYNLGLA--HKHLNEYSDSLECFH-----------KLQAIVPSM  267 (425)
Q Consensus       216 ~~~A~~~~~~al~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~~  267 (425)
                      +++|+..|+++++++|++..++.+++.+  +...|++++|+..++           +++.+.|+.
T Consensus        90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1           90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            9999999999999999999999999998  889999999999999           777777643

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.43  E-value=2.1e-13  Score=104.88  Aligned_cols=91  Identities=15%  Similarity=0.168  Sum_probs=83.9

Q ss_pred             HhcCHHHHHHHHHHHHhc---CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy1863         212 AREDYVKGKELYVHALDN---DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQAS  288 (425)
Q Consensus       212 ~~g~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  288 (425)
                      .+|++++|+.+|+++++.   +|+++.++.++|.++..+|++++|+.+|+++++.+|+++.+++.+|.++..+|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999   68899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcchH
Q psy1863         289 DVNENLLLEAVRNDA  303 (425)
Q Consensus       289 ~~~~~~a~~~~p~~~  303 (425)
                      ..+++ ++...|+++
T Consensus        82 ~~~~~-al~~~p~~~   95 (117)
T 3k9i_A           82 ELLLK-IIAETSDDE   95 (117)
T ss_dssp             HHHHH-HHHHHCCCH
T ss_pred             HHHHH-HHHhCCCcH
Confidence            99999 999999887

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.43  E-value=2.9e-12  Score=122.03  Aligned_cols=189  Identities=11%  Similarity=0.046  Sum_probs=156.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcc---c-----------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy1863         138 EINKAVTFLRMNDVSQAVDVLKSCD---E-----------------MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADT  197 (425)
Q Consensus       138 ~~~~a~~~~~~g~~~~A~~~~~~~~---~-----------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  197 (425)
                      .+..|..+...|++++|++.|.+++   +                 ....++..+|.+|...|++++|+.++.+++...+
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~   86 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM   86 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            3677899999999999999999987   1                 2235789999999999999999999999998765


Q ss_pred             CCH------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Q psy1863         198 YNS------AAFVNLGNCAMAREDYVKGKELYVHALDND------ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV-  264 (425)
Q Consensus       198 ~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-  264 (425)
                      ...      .+...+|.++...|++++|+.++++++...      +....++.++|.++...|+|++|+..+++++... 
T Consensus        87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~  166 (434)
T 4b4t_Q           87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK  166 (434)
T ss_dssp             TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence            432      346678888889999999999999998763      3347789999999999999999999999998763 


Q ss_pred             -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcc---hH------HHHHHHh-----hHHHHHHHHHHHHhh
Q psy1863         265 -----PSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRN---DA------LSQLHRE-----MKHEAEKCILTSAKL  325 (425)
Q Consensus       265 -----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~---~~------~~~l~~~-----~~~~A~~~~~~a~~~  325 (425)
                           |....++..+|.+|...|++++|..++++ ++...+.   .+      +..+|.+     ++.+|..+|.++++.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTA-ARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES  245 (434)
T ss_dssp             TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred             hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHH-HHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence                 23456899999999999999999999999 8876432   21      4455555     999999999999886


Q ss_pred             cC
Q psy1863         326 IA  327 (425)
Q Consensus       326 ~~  327 (425)
                      .+
T Consensus       246 ~~  247 (434)
T 4b4t_Q          246 YH  247 (434)
T ss_dssp             HH
T ss_pred             hh
Confidence            53

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.39  E-value=5.7e-12  Score=117.29  Aligned_cols=122  Identities=13%  Similarity=0.040  Sum_probs=113.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc-------------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD-------------------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA  195 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~-------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  195 (425)
                      ...+..+|..++..|++++|+..|++++                   |..+.++.++|.+|..+|++++|+.++++++++
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            3456789999999999999999999987                   234688999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHH
Q psy1863         196 DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC  256 (425)
Q Consensus       196 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~  256 (425)
                      +|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++++++...
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998887654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.39  E-value=1.2e-11  Score=110.02  Aligned_cols=175  Identities=13%  Similarity=0.085  Sum_probs=143.3

Q ss_pred             HHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q psy1863         154 AVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADT--YNSAAFVNLGNCAMAREDYVKGKELYVHALD  228 (425)
Q Consensus       154 A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  228 (425)
                      |+..+++.+   +....++..+|.++...|++++|+..+.+.+..+|  ++..+...++.++..+|+.+.|.+.++++.+
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            788888887   35566778999999999999999999999999987  8889999999999999999999999999999


Q ss_pred             cCcC----cHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy1863         229 NDAT----CIEALYNL--GLAHKHLN--EYSDSLECFHKLQAIVPS--MPEVLYQIASLYEITGDVEQASDVNENLLLEA  298 (425)
Q Consensus       229 ~~~~----~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~  298 (425)
                      .+|+    +..+..++  |.+....|  ++++|...|+++....|+  .+..+++   ++..+|++++|...++. +++.
T Consensus       165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~-l~~~  240 (310)
T 3mv2_B          165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVEL-LLSD  240 (310)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHH-HHSH
T ss_pred             cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHH-HHHh
Confidence            9883    23334444  44466666  999999999999888886  3344444   89999999999999998 8876


Q ss_pred             ----------CcchH--HHHHHHh---hHHHHHHHHHHHHhhcCCchhh
Q psy1863         299 ----------VRNDA--LSQLHRE---MKHEAEKCILTSAKLIAPSIED  332 (425)
Q Consensus       299 ----------~p~~~--~~~l~~~---~~~~A~~~~~~a~~~~~~~~~~  332 (425)
                                +|+++  +.++..+   .-++|.+++.++.+..|+++..
T Consensus       241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk~a~~l~~qL~~~~P~hp~i  289 (310)
T 3mv2_B          241 YYSVEQKENAVLYKPTFLANQITLALMQGLDTEDLTNQLVKLDHEHAFI  289 (310)
T ss_dssp             HHHTTTCHHHHSSHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTCCCHHH
T ss_pred             cccccccccCCCCCHHHHHHHHHHHHHhChHHHHHHHHHHHhCCCChHH
Confidence                      47777  6565444   2238899999999999988743

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.33  E-value=1.3e-12  Score=99.00  Aligned_cols=92  Identities=16%  Similarity=0.167  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc------HHHHHH
Q psy1863         166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC------IEALYN  239 (425)
Q Consensus       166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~  239 (425)
                      +.++..+|.++...|++++|+..|+++++.+|.++.++.++|.++...|++++|+..|++++.++|++      ..++..
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            44555666666666666666666666666666666666666666666666666666666666666655      555556


Q ss_pred             HHHHHHHcCCHHHHHHHH
Q psy1863         240 LGLAHKHLNEYSDSLECF  257 (425)
Q Consensus       240 la~~~~~~g~~~~A~~~~  257 (425)
                      +|.++...|+++.|+..+
T Consensus        84 ~~~~~~~~~~~~~a~~~~  101 (111)
T 2l6j_A           84 LELAQGAVGSVQIPVVEV  101 (111)
T ss_dssp             HHHHHHHHHCCCCCSSSS
T ss_pred             HHHHHHHHHhHhhhHhHH
Confidence            666665555555544433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.32  E-value=1e-12  Score=99.60  Aligned_cols=95  Identities=13%  Similarity=0.148  Sum_probs=88.5

Q ss_pred             CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHH
Q psy1863         199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM------PEVLY  272 (425)
Q Consensus       199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~  272 (425)
                      ++.++..+|.++...|++++|+..|++++..+|+++.++.++|.++..+|++++|+..|++++.++|++      ..+++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            457789999999999999999999999999999999999999999999999999999999999999998      88999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHH
Q psy1863         273 QIASLYEITGDVEQASDVNEN  293 (425)
Q Consensus       273 ~la~~~~~~g~~~~A~~~~~~  293 (425)
                      .+|.++..+|+++.|+..+++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHHH
Confidence            999999999988887766655

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.31  E-value=2.2e-11  Score=92.99  Aligned_cols=94  Identities=18%  Similarity=0.107  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy1863         184 QAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI  263 (425)
Q Consensus       184 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  263 (425)
                      +|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++..+|+++.++.++|.++...|++++|+..|++++..
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            46677777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCC--CHHHHHHHHHH
Q psy1863         264 VPS--MPEVLYQIASL  277 (425)
Q Consensus       264 ~p~--~~~~~~~la~~  277 (425)
                      .|.  +......+...
T Consensus        83 ~~~~~~~~~~~~l~~~   98 (115)
T 2kat_A           83 AQSRGDQQVVKELQVF   98 (115)
T ss_dssp             HHHHTCHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHH
Confidence            663  33333444333

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.31  E-value=3.2e-11  Score=87.56  Aligned_cols=82  Identities=29%  Similarity=0.441  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy1863         200 SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE  279 (425)
Q Consensus       200 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  279 (425)
                      +.+++.+|.++...|++++|+.+|++++..+|+++.++.++|.++...|++++|+.+|++++..+|+++.++..+|.++.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555554


Q ss_pred             Hc
Q psy1863         280 IT  281 (425)
Q Consensus       280 ~~  281 (425)
                      ..
T Consensus        89 ~~   90 (91)
T 1na3_A           89 KQ   90 (91)
T ss_dssp             HH
T ss_pred             hc
Confidence            43

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.30  E-value=3e-11  Score=87.71  Aligned_cols=86  Identities=33%  Similarity=0.405  Sum_probs=80.7

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL  242 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  242 (425)
                      +..+.+++.+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+.+|++++..+|+++.++.++|.
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~   85 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN   85 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcC
Q psy1863         243 AHKHLN  248 (425)
Q Consensus       243 ~~~~~g  248 (425)
                      ++...|
T Consensus        86 ~~~~~g   91 (91)
T 1na3_A           86 AKQKQG   91 (91)
T ss_dssp             HHHHHC
T ss_pred             HHHhcC
Confidence            988765

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.28  E-value=5.1e-10  Score=111.46  Aligned_cols=215  Identities=12%  Similarity=0.007  Sum_probs=176.9

Q ss_pred             HHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q psy1863         152 SQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAE-KMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL  227 (425)
Q Consensus       152 ~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  227 (425)
                      ......|++++   |..+..|...+......|+.++|. ..|++|+...|.+...|..++......|++++|..+|++++
T Consensus       326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l  405 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI  405 (679)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            34567788888   899999999999999999999997 99999999999999999999999999999999999999999


Q ss_pred             hc-----------CcC-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcC-C
Q psy1863         228 DN-----------DAT-----------CIEALYNLGLAHKHLNEYSDSLECFHKLQAI-VPSMPEVLYQIASLYEITG-D  283 (425)
Q Consensus       228 ~~-----------~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g-~  283 (425)
                      ..           .|.           ...+|...+.+..+.|..+.|...|.+|++. .+....+|...+.+....| +
T Consensus       406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d  485 (679)
T 4e6h_A          406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD  485 (679)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence            75           242           3557888999999999999999999999987 4456778877777766665 4


Q ss_pred             HHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcH
Q psy1863         284 VEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQD  356 (425)
Q Consensus       284 ~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (425)
                      ++.|...|+. +++..|+++  |..++..     +.+.|...|++++...|+..                      ....
T Consensus       486 ~e~Ar~ife~-~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~----------------------~~~~  542 (679)
T 4e6h_A          486 TKTACKVLEL-GLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH----------------------LLKM  542 (679)
T ss_dssp             CHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT----------------------HHHH
T ss_pred             HHHHHHHHHH-HHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH----------------------HHHH
Confidence            8999999999 999999888  4444444     78899999999999887410                      0124


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCc
Q psy1863         357 LEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAA  389 (425)
Q Consensus       357 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  389 (425)
                      +|......-...|+.+.+..+.+++....|+.+
T Consensus       543 lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~  575 (679)
T 4e6h_A          543 IFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN  575 (679)
T ss_dssp             HHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence            555556666778999999999999987777654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.22  E-value=8.7e-11  Score=89.67  Aligned_cols=85  Identities=14%  Similarity=0.121  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy1863         218 KGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLE  297 (425)
Q Consensus       218 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~  297 (425)
                      +|+..|+++++.+|+++.+++++|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++ +++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~   81 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES-GLA   81 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH-HHH
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             cCcchH
Q psy1863         298 AVRNDA  303 (425)
Q Consensus       298 ~~p~~~  303 (425)
                      ..|.+.
T Consensus        82 ~~~~~~   87 (115)
T 2kat_A           82 AAQSRG   87 (115)
T ss_dssp             HHHHHT
T ss_pred             hccccc
Confidence            887654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.20  E-value=1.1e-10  Score=111.97  Aligned_cols=92  Identities=15%  Similarity=0.041  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH
Q psy1863         202 AFVNLGNCAMAREDYVKGKELYVHALDN--------DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI-----VPSMP  268 (425)
Q Consensus       202 ~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~  268 (425)
                      ++.++|.+|..+|+|++|+.++++++.+        +|+....++++|.+|..+|++++|+..|++++.+     .|+++
T Consensus       353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp  432 (490)
T 3n71_A          353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP  432 (490)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            3444555555555555555555555443        2333444455555555555555555555555543     23332


Q ss_pred             ---HHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863         269 ---EVLYQIASLYEITGDVEQASDVNEN  293 (425)
Q Consensus       269 ---~~~~~la~~~~~~g~~~~A~~~~~~  293 (425)
                         .....++.++..++.+++|...|.+
T Consensus       433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~  460 (490)
T 3n71_A          433 ITKDLEAMRMQTEMELRMFRQNEFMYHK  460 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               2334455555555555555555555

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.19  E-value=1.1e-10  Score=112.03  Aligned_cols=124  Identities=12%  Similarity=0.033  Sum_probs=83.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhcc-----------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCC---H
Q psy1863         140 NKAVTFLRMNDVSQAVDVLKSCD-----------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD-----TYN---S  200 (425)
Q Consensus       140 ~~a~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~---~  200 (425)
                      ..+..+..+|+|++|+.++++++           |....++.+||.+|..+|+|++|+.++++++.+.     |++   .
T Consensus       314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a  393 (490)
T 3n71_A          314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG  393 (490)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            44555666777777777777766           4445667777777777777777777777777552     333   3


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy1863         201 AAFVNLGNCAMAREDYVKGKELYVHALDN--------DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI  263 (425)
Q Consensus       201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  263 (425)
                      ..+++||.+|..+|++++|+.+|++++.+        +|.......+++.++..+|.+++|...|.++.+.
T Consensus       394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777777777777777777777764        3334455567777777777777777777766443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.19  E-value=1.2e-09  Score=108.82  Aligned_cols=197  Identities=9%  Similarity=0.002  Sum_probs=170.3

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHH-HHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------CC
Q psy1863         134 AQDLEINKAVTFLRMNDVSQAV-DVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD-----------TY  198 (425)
Q Consensus       134 ~~~~~~~~a~~~~~~g~~~~A~-~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------p~  198 (425)
                      ..++++..|..+...|+.++|. .+|++++   |.....|..++......|++++|...|++++..-           |.
T Consensus       342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~  421 (679)
T 4e6h_A          342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT  421 (679)
T ss_dssp             CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence            4788889999999999999997 9999999   8888889999999999999999999999999752           53


Q ss_pred             -----------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CcCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCC
Q psy1863         199 -----------NSAAFVNLGNCAMAREDYVKGKELYVHALDN-DATCIEALYNLGLAHKHLNE-YSDSLECFHKLQAIVP  265 (425)
Q Consensus       199 -----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p  265 (425)
                                 ...+|...+....+.|..+.|...|.+|++. .+....+|...|.+-...|+ ++.|...|+.+++..|
T Consensus       422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p  501 (679)
T 4e6h_A          422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA  501 (679)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred             chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC
Confidence                       3457888899989999999999999999988 55557788878877777654 9999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcc--hH---HHHHHHh-----hHHHHHHHHHHHHhhcCCchh
Q psy1863         266 SMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRN--DA---LSQLHRE-----MKHEAEKCILTSAKLIAPSIE  331 (425)
Q Consensus       266 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~--~~---~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~  331 (425)
                      +++..+...+......|+.+.|...|++ ++...|+  ..   |..+...     +.+.+....+++.+..|++..
T Consensus       502 ~~~~~w~~y~~fe~~~~~~~~AR~lfer-al~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~  576 (679)
T 4e6h_A          502 TDGEYINKYLDFLIYVNEESQVKSLFES-SIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK  576 (679)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHH-HTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred             CchHHHHHHHHHHHhCCCHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence            9999999999999999999999999999 9998883  22   5544444     778899999999999998754

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.18  E-value=5.3e-11  Score=88.13  Aligned_cols=88  Identities=13%  Similarity=0.158  Sum_probs=46.5

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCcCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy1863         205 NLGNCAMAREDYVKGKELYVHALDNDATCIE-ALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGD  283 (425)
Q Consensus       205 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  283 (425)
                      ..|.++...|++++|+..|+++++.+|+++. ++.++|.++...|++++|+..|+++++.+|+++.++..        +.
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~   76 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM   76 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence            4455555555555555555555555555555 55555555555555555555555555555555554432        33


Q ss_pred             HHHHHHHHHHHHHhcCcc
Q psy1863         284 VEQASDVNENLLLEAVRN  301 (425)
Q Consensus       284 ~~~A~~~~~~~a~~~~p~  301 (425)
                      +.+++..|++ +...+|+
T Consensus        77 ~~~a~~~~~~-~~~~~p~   93 (99)
T 2kc7_A           77 VMDILNFYNK-DMYNQLE   93 (99)
T ss_dssp             HHHHHHHHCC-TTHHHHC
T ss_pred             HHHHHHHHHH-HhccCcc
Confidence            4444455555 4444443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.18  E-value=1.4e-10  Score=86.23  Aligned_cols=70  Identities=13%  Similarity=0.278  Sum_probs=46.6

Q ss_pred             CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy1863         196 DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP  265 (425)
Q Consensus       196 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  265 (425)
                      +|+++.+++.+|.++...|++++|+.+|+++++.+|+++.+|.++|.+|...|++++|+..|++++++.|
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~   72 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR   72 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence            4666666666666666666666666666666666666666666666666666666666666666666654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.16  E-value=5.7e-11  Score=87.93  Aligned_cols=91  Identities=18%  Similarity=0.122  Sum_probs=80.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC
Q psy1863         170 TNLSFIYFLQGEVEQAEKMAEEACTADTYNSA-AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLN  248 (425)
Q Consensus       170 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  248 (425)
                      +..|.++...|++++|+..|+++++.+|.++. +++.+|.++...|++++|+.+|+++++++|+++.++.+        +
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~   75 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K   75 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence            56889999999999999999999999999999 99999999999999999999999999999999887754        5


Q ss_pred             CHHHHHHHHHHHHhhCCCCH
Q psy1863         249 EYSDSLECFHKLQAIVPSMP  268 (425)
Q Consensus       249 ~~~~A~~~~~~al~~~p~~~  268 (425)
                      .+.+++..|+++...+|+++
T Consensus        76 ~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           76 MVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHHHHHHCCTTHHHHCCS
T ss_pred             HHHHHHHHHHHHhccCcccc
Confidence            67888888888887777543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.14  E-value=1.4e-09  Score=85.89  Aligned_cols=111  Identities=11%  Similarity=0.024  Sum_probs=73.5

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH----cCCHHHHHHH
Q psy1863         181 EVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKH----LNEYSDSLEC  256 (425)
Q Consensus       181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~  256 (425)
                      ++++|+.+|+++.+..+....    +|.+|...+..++|+.+|+++.+.  .++.+++++|.+|..    .+++++|+.+
T Consensus        10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~   83 (138)
T 1klx_A           10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY   83 (138)
T ss_dssp             HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence            566677777777666533333    666666666666677777777665  456677777777766    6677777777


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCc
Q psy1863         257 FHKLQAIVPSMPEVLYQIASLYEI----TGDVEQASDVNENLLLEAVR  300 (425)
Q Consensus       257 ~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~a~~~~p  300 (425)
                      |+++.+.  .++.+.+++|.+|..    .+++++|+.+|++ +.+...
T Consensus        84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~-Aa~~g~  128 (138)
T 1klx_A           84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK-ACRLGS  128 (138)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH-HHHTTC
T ss_pred             HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH-HHHCCC
Confidence            7777655  466677777777776    6677777777777 666543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.13  E-value=8.2e-10  Score=87.27  Aligned_cols=119  Identities=14%  Similarity=0.126  Sum_probs=101.7

Q ss_pred             CCHHHHHHHHHhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHH
Q psy1863         149 NDVSQAVDVLKSCD-EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMA----REDYVKGKELY  223 (425)
Q Consensus       149 g~~~~A~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~  223 (425)
                      +++++|+.+|+++. ..++.+.  +|.+|...+..++|+.+|+++.+.  .++.+++++|.+|..    .+++++|+.+|
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~   84 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYY   84 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence            36788999999988 4455555  999999999999999999999886  688999999999998    89999999999


Q ss_pred             HHHHhcCcCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy1863         224 VHALDNDATCIEALYNLGLAHKH----LNEYSDSLECFHKLQAIVPSMPEVLYQIA  275 (425)
Q Consensus       224 ~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la  275 (425)
                      +++.+.  .++.+++++|.+|..    .+++++|+.+|+++.+..  ++.+..+++
T Consensus        85 ~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~  136 (138)
T 1klx_A           85 SKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN  136 (138)
T ss_dssp             HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred             HHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence            999987  678999999999999    899999999999998874  566665554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.10  E-value=4.6e-10  Score=83.31  Aligned_cols=74  Identities=23%  Similarity=0.316  Sum_probs=68.2

Q ss_pred             cCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         229 NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       229 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      .+|+++.+++++|.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|++ ++++.|.+.
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~-al~l~~~~~   75 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ-GIEVAREEG   75 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHHS
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhhhcCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999 998877654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.99  E-value=2.4e-08  Score=90.41  Aligned_cols=133  Identities=11%  Similarity=0.041  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH-------HHHH-HHHHH--HHhcCcCcHH
Q psy1863         169 ATNLSFIYFLQGE---VEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDY-------VKGK-ELYVH--ALDNDATCIE  235 (425)
Q Consensus       169 ~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-------~~A~-~~~~~--al~~~~~~~~  235 (425)
                      ++..|..++..++   +.+|+.+|+++++++|+++.++..++.+|.....+       ..++ ..++.  ++..+|..+.
T Consensus       199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~  278 (372)
T 3ly7_A          199 NFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSI  278 (372)
T ss_dssp             HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHH
Confidence            4455666665544   47899999999999999999999888887632211       1111 12222  2245788899


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       236 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      ++..++..+...|++++|+..+++++.++| +..++..+|.++...|++++|++.|.+ |+.++|..+
T Consensus       279 ~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~-AlrL~P~~~  344 (372)
T 3ly7_A          279 IYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLT-AFNLRPGAN  344 (372)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHSCSHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHH-HHhcCCCcC
Confidence            999999999999999999999999999997 477888999999999999999999999 999999988

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.85  E-value=1.8e-07  Score=81.23  Aligned_cols=109  Identities=10%  Similarity=-0.010  Sum_probs=93.7

Q ss_pred             HhcCCCCHHHHHHHHHHHHH---h--c------CHHHHHHHHHHHHhcCcC--cHHHHHHHHHHHHHc-----CCHHHHH
Q psy1863         193 CTADTYNSAAFVNLGNCAMA---R--E------DYVKGKELYVHALDNDAT--CIEALYNLGLAHKHL-----NEYSDSL  254 (425)
Q Consensus       193 l~~~p~~~~~~~~la~~~~~---~--g------~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~-----g~~~~A~  254 (425)
                      -+.+|+++..++-.|.+...   .  |      ....|...++++++++|+  +..+|..+|.+|...     |+.++|.
T Consensus       145 ~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~  224 (301)
T 3u64_A          145 SRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAH  224 (301)
T ss_dssp             TTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHH
T ss_pred             HHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHH
Confidence            34568888887776666533   1  2      367899999999999999  577999999999995     9999999


Q ss_pred             HHHHHHHhhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCcch
Q psy1863         255 ECFHKLQAIVPSM-PEVLYQIASLYEI-TGDVEQASDVNENLLLEAVRND  302 (425)
Q Consensus       255 ~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~~a~~~~p~~  302 (425)
                      .+|+++++++|+. ..+++..|..++. .|++++|..++++ ++...|..
T Consensus       225 ~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~k-AL~a~p~~  273 (301)
T 3u64_A          225 TAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDR-ALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHH-HHHCCGGG
T ss_pred             HHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH-HHcCCCCC
Confidence            9999999999975 9999999999988 5999999999999 99998885

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.82  E-value=6.6e-08  Score=75.88  Aligned_cols=96  Identities=17%  Similarity=0.190  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcC-c-CcHHHHHHHHHHHHHcCCHHHHHHH
Q psy1863         182 VEQAEKMAEEACTADTYNSAAFVNLGNCAMARE---DYVKGKELYVHALDND-A-TCIEALYNLGLAHKHLNEYSDSLEC  256 (425)
Q Consensus       182 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~  256 (425)
                      ...+.+.|.+.+..+|.+..+.+++|.++.+.+   +.++++.+++.+++.+ | ++.++++++|..++++|+|++|+.+
T Consensus        14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y   93 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   93 (152)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence            456677777777778888888888888888877   6678888888888887 6 5678888888888888888888888


Q ss_pred             HHHHHhhCCCCHHHHHHHHHH
Q psy1863         257 FHKLQAIVPSMPEVLYQIASL  277 (425)
Q Consensus       257 ~~~al~~~p~~~~~~~~la~~  277 (425)
                      +++++++.|++..+....-.+
T Consensus        94 ~~~lL~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           94 VRGLLQTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHH
Confidence            888888888887776554433

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.80  E-value=1.9e-07  Score=84.56  Aligned_cols=130  Identities=9%  Similarity=0.041  Sum_probs=104.1

Q ss_pred             HHHHHHHHHcC---CHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCH-------HHHHH-HHH--HHHhcCCCCHHH
Q psy1863         139 INKAVTFLRMN---DVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEV-------EQAEK-MAE--EACTADTYNSAA  202 (425)
Q Consensus       139 ~~~a~~~~~~g---~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~-------~~A~~-~~~--~al~~~p~~~~~  202 (425)
                      +..|..++..+   .+.+|+.+|++++   |..+.++..++.+|.....+       ..++. .+.  .++..+|.++.+
T Consensus       200 ~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~  279 (372)
T 3ly7_A          200 FYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSII  279 (372)
T ss_dssp             HHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHH
Confidence            45577777665   4578999999999   99999999888888532111       11111 122  123567999999


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy1863         203 FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPE  269 (425)
Q Consensus       203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  269 (425)
                      +..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|.+|+.++|..+.
T Consensus       280 ~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          280 YQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            999999999999999999999999999975 678899999999999999999999999999997653

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.77  E-value=4.6e-08  Score=70.98  Aligned_cols=71  Identities=10%  Similarity=0.013  Sum_probs=41.7

Q ss_pred             CCCCHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy1863         196 DTYNSAAFVNLGNCAMARED---YVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS  266 (425)
Q Consensus       196 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  266 (425)
                      +|+++..+..+|.+++..++   .++|...++++++.+|+++.++..+|..++..|+|++|+.+|++++..+|.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            35555566666665544433   456666666666666666666666666666666666666666666655554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.77  E-value=3.6e-08  Score=93.11  Aligned_cols=105  Identities=7%  Similarity=-0.016  Sum_probs=72.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcC-----CCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcCcHHHHH
Q psy1863         175 IYFLQGEVEQAEKMAEEACTAD-----TYNS---AAFVNLGNCAMAREDYVKGKELYVHALDN--------DATCIEALY  238 (425)
Q Consensus       175 ~~~~~g~~~~A~~~~~~al~~~-----p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~  238 (425)
                      -+..+|++++|+..+++++++.     |+++   .++.++|.+|..+|+|++|+.++++++.+        +|+....++
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~  375 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM  375 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence            3456778888888888887652     4443   55777888888888888888888888765        444466777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHH---HHHHHHHHHH
Q psy1863         239 NLGLAHKHLNEYSDSLECFHKLQAI-----VPSMPE---VLYQIASLYE  279 (425)
Q Consensus       239 ~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~~~la~~~~  279 (425)
                      ++|.+|..+|++++|+..+++++++     .|+++.   +..+|+.+..
T Consensus       376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~  424 (429)
T 3qwp_A          376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA  424 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence            8888888888888888888888765     345543   3444555443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.76  E-value=4.1e-08  Score=92.58  Aligned_cols=93  Identities=11%  Similarity=0.053  Sum_probs=70.9

Q ss_pred             HcCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcCcHHHHHHHH
Q psy1863         178 LQGEVEQAEKMAEEACTA-----DTYNS---AAFVNLGNCAMAREDYVKGKELYVHALDN--------DATCIEALYNLG  241 (425)
Q Consensus       178 ~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~la  241 (425)
                      ..|+|++|+..+++++++     .|+++   .++.++|.+|..+|+|++|+.++++++.+        +|+....++++|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            457888888888888875     34444   55788888888888888888888888865        455566788888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhh-----CCCCHHH
Q psy1863         242 LAHKHLNEYSDSLECFHKLQAI-----VPSMPEV  270 (425)
Q Consensus       242 ~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~  270 (425)
                      .+|..+|++++|+..|++++++     .|+++.+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~  423 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI  423 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence            8888888888888888888775     4555543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.73  E-value=5.1e-08  Score=92.09  Aligned_cols=108  Identities=8%  Similarity=-0.012  Sum_probs=88.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhcc-----------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCCH---
Q psy1863         140 NKAVTFLRMNDVSQAVDVLKSCD-----------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD-----TYNS---  200 (425)
Q Consensus       140 ~~a~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~---  200 (425)
                      .....+..+|++++|+..+++++           |....++.++|.+|..+|+|++|+.++++++...     |+++   
T Consensus       292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a  371 (429)
T 3qwp_A          292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG  371 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence            33455678899999999999987           5556789999999999999999999999999763     4444   


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CcCc---HHHHHHHHHHHHHc
Q psy1863         201 AAFVNLGNCAMAREDYVKGKELYVHALDN-----DATC---IEALYNLGLAHKHL  247 (425)
Q Consensus       201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~---~~~~~~la~~~~~~  247 (425)
                      ..++++|.+|..+|++++|+.+|++++++     .|++   ..++.+++.+...+
T Consensus       372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            56999999999999999999999999976     3444   55666777766543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.72  E-value=7.2e-08  Score=69.94  Aligned_cols=71  Identities=15%  Similarity=0.236  Sum_probs=66.6

Q ss_pred             cchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc
Q psy1863         163 EMTSSAATNLSFIYFLQGE---VEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC  233 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  233 (425)
                      |.++.++..+|.+++..++   .++|...++++++.+|+++.+++.+|..++..|+|++|+.+|++++..+|..
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            6788999999999987766   7999999999999999999999999999999999999999999999999874

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.71  E-value=5.1e-08  Score=91.95  Aligned_cols=95  Identities=12%  Similarity=0.080  Sum_probs=79.7

Q ss_pred             HHHHHHcCCHHHHHHHHHhcc-----------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCC---HHH
Q psy1863         142 AVTFLRMNDVSQAVDVLKSCD-----------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD-----TYN---SAA  202 (425)
Q Consensus       142 a~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~~  202 (425)
                      .......|+|++|+.++++++           |....++.++|.+|..+|+|++|+.++++++.+.     |++   ...
T Consensus       305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~  384 (433)
T 3qww_A          305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM  384 (433)
T ss_dssp             HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence            334445789999999999987           5556788999999999999999999999999762     444   456


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhc-----CcCcHHH
Q psy1863         203 FVNLGNCAMAREDYVKGKELYVHALDN-----DATCIEA  236 (425)
Q Consensus       203 ~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~  236 (425)
                      ++++|.+|..+|++++|+.+|++++++     .|+++.+
T Consensus       385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~  423 (433)
T 3qww_A          385 WLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI  423 (433)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence            999999999999999999999999986     4555544

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.69  E-value=1.9e-07  Score=69.43  Aligned_cols=74  Identities=18%  Similarity=0.083  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHH
Q psy1863         167 SAATNLSFIYFLQGEVEQAEKMAEEACTAD-------TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYN  239 (425)
Q Consensus       167 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  239 (425)
                      .-++.+|..++..|+|..|+..|++|++..       +..+.++..+|.+++++|++++|+.++++++++.|++..+..+
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n   85 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence            334445555555555555555555554432       1223344444444444444444444444444444444444443


Q ss_pred             H
Q psy1863         240 L  240 (425)
Q Consensus       240 l  240 (425)
                      +
T Consensus        86 ~   86 (104)
T 2v5f_A           86 L   86 (104)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.68  E-value=2.9e-07  Score=68.44  Aligned_cols=78  Identities=18%  Similarity=0.166  Sum_probs=68.7

Q ss_pred             CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy1863         199 NSAAFVNLGNCAMAREDYVKGKELYVHALDND-------ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVL  271 (425)
Q Consensus       199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  271 (425)
                      ++.-++.+|..++..|+|..|+..|+++++..       +..+.++.++|.++.++|+++.|+..+++++++.|++..+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            45667899999999999999999999999863       34578899999999999999999999999999999999988


Q ss_pred             HHHHH
Q psy1863         272 YQIAS  276 (425)
Q Consensus       272 ~~la~  276 (425)
                      .+++.
T Consensus        84 ~n~~~   88 (104)
T 2v5f_A           84 GNLKY   88 (104)
T ss_dssp             HHHHH
T ss_pred             hhHHH
Confidence            88773

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.66  E-value=3.4e-07  Score=79.60  Aligned_cols=121  Identities=19%  Similarity=0.118  Sum_probs=98.4

Q ss_pred             HHcCCHHHHHHHHHhcccchHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHH
Q psy1863         146 LRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFL-----QG------EVEQAEKMAEEACTADTY--NSAAFVNLGNCAMA  212 (425)
Q Consensus       146 ~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~-----~g------~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~  212 (425)
                      +..++..+-...+.++-+.++.+++..|.+...     .|      ....|...++++++++|+  +..++..+|..|..
T Consensus       132 ~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~  211 (301)
T 3u64_A          132 VFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAA  211 (301)
T ss_dssp             HTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred             HHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHh
Confidence            344443333333444447888888877776644     13      357899999999999999  66799999999999


Q ss_pred             h-----cCHHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCC
Q psy1863         213 R-----EDYVKGKELYVHALDNDATC-IEALYNLGLAHKH-LNEYSDSLECFHKLQAIVPS  266 (425)
Q Consensus       213 ~-----g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~  266 (425)
                      .     |+.++|..+|+++++++|+. ..+++..|..+.. .|++++|..++++++...|.
T Consensus       212 vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          212 APESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             SCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             CCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            5     99999999999999999975 9999999999988 59999999999999998876

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.64  E-value=5e-06  Score=80.18  Aligned_cols=163  Identities=10%  Similarity=0.056  Sum_probs=134.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhcc----cchHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHhcC-CCCHHHHHH
Q psy1863         140 NKAVTFLRMNDVSQAVDVLKSCD----EMTSSAATNLSFIYFLQG---------EVEQAEKMAEEACTAD-TYNSAAFVN  205 (425)
Q Consensus       140 ~~a~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~lg~~~~~~g---------~~~~A~~~~~~al~~~-p~~~~~~~~  205 (425)
                      ..-..+.+.|+.++|..+|+++.    ..+..+|..+-.++...+         ..++|...|++..... +.+..++..
T Consensus        31 ~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~  110 (501)
T 4g26_A           31 QKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTN  110 (501)
T ss_dssp             HHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            34467789999999999999987    456677777776666544         3789999999987764 447788999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCC
Q psy1863         206 LGNCAMAREDYVKGKELYVHALDND-ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP-SMPEVLYQIASLYEITGD  283 (425)
Q Consensus       206 la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~  283 (425)
                      +...+.+.|++++|..+|++..+.. +-+..+|..+-..|.+.|+.++|.+.|++..+..- .+..+|..+..++.+.|+
T Consensus       111 lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~  190 (501)
T 4g26_A          111 GARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKN  190 (501)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCC
Confidence            9999999999999999999988752 23578899999999999999999999999987643 377889999999999999


Q ss_pred             HHHHHHHHHHHHHh--cCcchH
Q psy1863         284 VEQASDVNENLLLE--AVRNDA  303 (425)
Q Consensus       284 ~~~A~~~~~~~a~~--~~p~~~  303 (425)
                      .++|..++++ ..+  ..|+..
T Consensus       191 ~d~A~~ll~~-Mr~~g~~ps~~  211 (501)
T 4g26_A          191 ADKVYKTLQR-LRDLVRQVSKS  211 (501)
T ss_dssp             HHHHHHHHHH-HHHHTSSBCHH
T ss_pred             HHHHHHHHHH-HHHhCCCcCHH
Confidence            9999999999 554  356555

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.59  E-value=2.2e-07  Score=72.91  Aligned_cols=88  Identities=9%  Similarity=0.076  Sum_probs=80.6

Q ss_pred             CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCHHHHHH
Q psy1863         215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLN---EYSDSLECFHKLQAIV-P-SMPEVLYQIASLYEITGDVEQASD  289 (425)
Q Consensus       215 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~  289 (425)
                      ....+.+.|.+.+..+|.+.++.+++|.++.+.+   +.++++..++..++.+ | +..++++++|..+.++|+|++|+.
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence            4566788888888888999999999999999988   6779999999999998 7 568899999999999999999999


Q ss_pred             HHHHHHHhcCcchH
Q psy1863         290 VNENLLLEAVRNDA  303 (425)
Q Consensus       290 ~~~~~a~~~~p~~~  303 (425)
                      +++. +++.+|++.
T Consensus        93 y~~~-lL~ieP~n~  105 (152)
T 1pc2_A           93 YVRG-LLQTEPQNN  105 (152)
T ss_dssp             HHHH-HHHHCTTCH
T ss_pred             HHHH-HHhcCCCCH
Confidence            9999 999999987

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.46  E-value=2.3e-05  Score=75.55  Aligned_cols=165  Identities=10%  Similarity=-0.120  Sum_probs=113.1

Q ss_pred             HHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q psy1863         151 VSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL  227 (425)
Q Consensus       151 ~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  227 (425)
                      ......+|++++   |..+..|...+..+...|+.++|...|++++.. |.+...+...+... ..+   +....+.+..
T Consensus       195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~---~~~~~l~~~~  269 (493)
T 2uy1_A          195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEE---AVYGDLKRKY  269 (493)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCT---HHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chh---HHHHHHHHHH
Confidence            345677888888   888999999999999999999999999999999 99887766554431 111   1111111111


Q ss_pred             h----------cCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q psy1863         228 D----------NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG-DVEQASDVNENLLL  296 (425)
Q Consensus       228 ~----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~a~  296 (425)
                      .          ..+....+|...+....+.|..+.|...|.++ ...+.....|...|.+....+ +.+.|...|+. ++
T Consensus       270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~-al  347 (493)
T 2uy1_A          270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSS-GL  347 (493)
T ss_dssp             C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHH-HH
T ss_pred             HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHH-HH
Confidence            0          01122456777777777788888888888888 433335566666666655555 58888888888 88


Q ss_pred             hcCcchH--HHHHHHh-----hHHHHHHHHHHH
Q psy1863         297 EAVRNDA--LSQLHRE-----MKHEAEKCILTS  322 (425)
Q Consensus       297 ~~~p~~~--~~~l~~~-----~~~~A~~~~~~a  322 (425)
                      +..|+++  +......     +.+.|...|+++
T Consensus       348 ~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          348 LKHPDSTLLKEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            8888777  3333333     667777777776

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.42  E-value=0.00018  Score=69.22  Aligned_cols=160  Identities=11%  Similarity=-0.035  Sum_probs=100.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhcc--cchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc---CCCCHHHHHHHHHHHH--
Q psy1863         140 NKAVTFLRMNDVSQAVDVLKSCD--EMTSSAATNLSFIYFLQGE-VEQAEKMAEEACTA---DTYNSAAFVNLGNCAM--  211 (425)
Q Consensus       140 ~~a~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~~~la~~~~--  211 (425)
                      ..+...+-.|+++.+..+|++++  ..+...|..........++ .+.....|+.++..   +|.+...|......+.  
T Consensus        19 er~l~~~P~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~   98 (493)
T 2uy1_A           19 EHARRLYMSKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKI   98 (493)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSC
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhc
Confidence            33444444478888888888888  2255666666655555553 34556677777764   5777777777766543  


Q ss_pred             --HhcCHHHHHHHHHHHHhcCcCcHH-------------------------------------------------HHHHH
Q psy1863         212 --AREDYVKGKELYVHALDNDATCIE-------------------------------------------------ALYNL  240 (425)
Q Consensus       212 --~~g~~~~A~~~~~~al~~~~~~~~-------------------------------------------------~~~~l  240 (425)
                        .+|+.+.+...|++++...+.+..                                                 .|...
T Consensus        99 ~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y  178 (493)
T 2uy1_A           99 EDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARL  178 (493)
T ss_dssp             SSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence              356777888888888875322211                                                 11111


Q ss_pred             HHHHHHcCC---------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         241 GLAHKHLNE---------YSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       241 a~~~~~~g~---------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      ...  ..++         .+.....|++++...|..+..|...+..+...|+.++|...|++ ++.. |.+.
T Consensus       179 ~~~--E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~er-Ai~~-P~~~  246 (493)
T 2uy1_A          179 IDL--EMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVER-GIEM-SDGM  246 (493)
T ss_dssp             HHH--HHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHH-CCSS
T ss_pred             HHH--HhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhC-CCcH
Confidence            111  1121         23455677777777787788888888777777888888888888 8777 7665

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.28  E-value=0.00021  Score=68.86  Aligned_cols=158  Identities=12%  Similarity=0.116  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHhcC-cCcHHH
Q psy1863         168 AATNLSFIYFLQGEVEQAEKMAEEACTAD-TYNSAAFVNLGNCAMAR---------EDYVKGKELYVHALDND-ATCIEA  236 (425)
Q Consensus       168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~-~~~~~~  236 (425)
                      .+..+-..+.+.|+.++|+.+|++..+.. +.+..+|..+-.++...         +..++|...|++..... +-+..+
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t  107 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT  107 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence            35566678889999999999999998764 34666777776666544         34789999999988752 235778


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CcchH-HHHHHHh--
Q psy1863         237 LYNLGLAHKHLNEYSDSLECFHKLQAIV-PSMPEVLYQIASLYEITGDVEQASDVNENLLLEA--VRNDA-LSQLHRE--  310 (425)
Q Consensus       237 ~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~--~p~~~-~~~l~~~--  310 (425)
                      |..+...|.+.|++++|...|++..+.. +.+..+|..+...|.+.|+.++|...|++ ..+.  .|+.. +..+-..  
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~-M~~~G~~Pd~~ty~~Li~~~~  186 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH-MVESEVVPEEPELAALLKVSM  186 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHTTCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHh
Confidence            9999999999999999999999988763 23788899999999999999999999999 6553  56655 4443333  


Q ss_pred             ---hHHHHHHHHHHHHhhc
Q psy1863         311 ---MKHEAEKCILTSAKLI  326 (425)
Q Consensus       311 ---~~~~A~~~~~~a~~~~  326 (425)
                         +.++|...+++..+..
T Consensus       187 ~~g~~d~A~~ll~~Mr~~g  205 (501)
T 4g26_A          187 DTKNADKVYKTLQRLRDLV  205 (501)
T ss_dssp             HTTCHHHHHHHHHHHHHHT
T ss_pred             hCCCHHHHHHHHHHHHHhC
Confidence               9999999999987654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.27  E-value=1.5e-05  Score=60.17  Aligned_cols=96  Identities=15%  Similarity=0.146  Sum_probs=73.7

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHH---HHHHHHHHHhcC-c-CcHHHHHHHHHHHHHcCCHHHHHH
Q psy1863         181 EVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVK---GKELYVHALDND-A-TCIEALYNLGLAHKHLNEYSDSLE  255 (425)
Q Consensus       181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-~-~~~~~~~~la~~~~~~g~~~~A~~  255 (425)
                      ....+...|.+.+..++.+..+.+++|.++.+......   ++.+++..+..+ | ..-+.++.+|..++++|+|++|..
T Consensus        16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~   95 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   95 (126)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence            34556667777777777788888888888888776655   888888888776 5 456788888888888888888888


Q ss_pred             HHHHHHhhCCCCHHHHHHHHH
Q psy1863         256 CFHKLQAIVPSMPEVLYQIAS  276 (425)
Q Consensus       256 ~~~~al~~~p~~~~~~~~la~  276 (425)
                      +++..++..|++..+......
T Consensus        96 ~~~~lL~~eP~n~QA~~Lk~~  116 (126)
T 1nzn_A           96 YVRGLLQTEPQNNQAKELERL  116 (126)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHH
Confidence            888888888888777654443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.94  E-value=0.00021  Score=55.07  Aligned_cols=107  Identities=14%  Similarity=0.051  Sum_probs=67.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCH------HHHHHHHHHHHhcCcCc--------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863         195 ADTYNSAAFVNLGNCAMAREDY------VKGKELYVHALDNDATC--------IEALYNLGLAHKHLNEYSDSLECFHKL  260 (425)
Q Consensus       195 ~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~a  260 (425)
                      ..|++++.|..........|+.      ++-+..|++++..-|..        ...|...|.. ...++.++|.+.|+.+
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a   86 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA   86 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence            3566666666666666666666      66666666666554421        4445555543 4456777777777777


Q ss_pred             HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         261 QAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       261 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      +..+...+.+|...|..-.++|+...|...+.+ ++.+.|...
T Consensus        87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~-AiG~~~k~~  128 (161)
T 4h7y_A           87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQK-AVERGAVPL  128 (161)
T ss_dssp             HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHTTCBCH
T ss_pred             HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHH-HhccCCCcH
Confidence            666666666777777777777777777777777 777666544

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.93  E-value=7.7e-05  Score=56.24  Aligned_cols=91  Identities=11%  Similarity=0.080  Sum_probs=78.9

Q ss_pred             HhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCHHH
Q psy1863         212 AREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSD---SLECFHKLQAIV-P-SMPEVLYQIASLYEITGDVEQ  286 (425)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~  286 (425)
                      .......+...|.+.+..++.+..+.+++|.++.+..+..+   ++..++..+... | ..-+.++.+|..++++|+|++
T Consensus        13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~   92 (126)
T 1nzn_A           13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK   92 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence            33445667777888888788889999999999999888776   999999998876 4 456789999999999999999


Q ss_pred             HHHHHHHHHHhcCcchH
Q psy1863         287 ASDVNENLLLEAVRNDA  303 (425)
Q Consensus       287 A~~~~~~~a~~~~p~~~  303 (425)
                      |+.+++. .++..|++.
T Consensus        93 A~~~~~~-lL~~eP~n~  108 (126)
T 1nzn_A           93 ALKYVRG-LLQTEPQNN  108 (126)
T ss_dssp             HHHHHHH-HHHHCTTCH
T ss_pred             HHHHHHH-HHHhCCCCH
Confidence            9999999 999999988

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.77  E-value=0.00085  Score=51.74  Aligned_cols=107  Identities=9%  Similarity=-0.067  Sum_probs=91.4

Q ss_pred             cchHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q psy1863         163 EMTSSAATNLSFIYFLQGEV------EQAEKMAEEACTADTYN--------SAAFVNLGNCAMAREDYVKGKELYVHALD  228 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~  228 (425)
                      |.+++.|..........|+.      ++-++.|++|+..-|..        ...|...+.. ...++.++|...|+.++.
T Consensus        10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~   88 (161)
T 4h7y_A           10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARA   88 (161)
T ss_dssp             CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHH
Confidence            88899999999888888999      88899999999876643        3446666644 667999999999999999


Q ss_pred             cCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy1863         229 NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEV  270 (425)
Q Consensus       229 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  270 (425)
                      ++...+.+|...|..-.++|+...|...+.+++.+.|.....
T Consensus        89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~  130 (161)
T 4h7y_A           89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM  130 (161)
T ss_dssp             HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred             HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence            888889999999999999999999999999999998865443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.76  E-value=0.00017  Score=56.90  Aligned_cols=128  Identities=15%  Similarity=0.065  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcc---cc---------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHH
Q psy1863         138 EINKAVTFLRMNDVSQAVDVLKSCD---EM---------TSSAATNLSFIYFLQGEVEQAEKMAEEACTAD---TYNSAA  202 (425)
Q Consensus       138 ~~~~a~~~~~~g~~~~A~~~~~~~~---~~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~  202 (425)
                      ++.....++..|.|+.|+-+...++   ..         ...++..+|.+++..|+|..|...|++++...   +.+...
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~  102 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV  102 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            3455666677777777777666655   11         12356667777777777777777777766543   222211


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy1863         203 FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLY  278 (425)
Q Consensus       203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  278 (425)
                      ...++.    ...+..       .... +...++.+.++.||..+|++++|+..++..-. ....+.+...||.+|
T Consensus       103 ~~~~~~----~ss~p~-------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          103 RPSTGN----SASTPQ-------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY  165 (167)
T ss_dssp             -------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred             cccccc----cCCCcc-------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence            111100    000000       0111 23455666677777777777777766543211 113455555555543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.69  E-value=0.00045  Score=54.50  Aligned_cols=115  Identities=9%  Similarity=-0.036  Sum_probs=67.4

Q ss_pred             hHHHHHHHHHhcCC---cchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc------cchHHHHHHHHHHHHHcCCHHHHHH
Q psy1863         117 GYNWCVQSIRNSAH---SSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD------EMTSSAATNLSFIYFLQGEVEQAEK  187 (425)
Q Consensus       117 ~~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~lg~~~~~~g~~~~A~~  187 (425)
                      -...+.......+.   +....++...+|..++..|+|.+|...|++++      +....+...++.    ...+.    
T Consensus        42 La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~----~ss~p----  113 (167)
T 3ffl_A           42 LSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGN----SASTP----  113 (167)
T ss_dssp             HHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------------------------
T ss_pred             HHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccc----cCCCc----
Confidence            34444444433332   33456678899999999999999999999987      323222111110    00000    


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q psy1863         188 MAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAH  244 (425)
Q Consensus       188 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~  244 (425)
                         .... .+...++.+.++.|+...|++++|+..++..-.. ..++.+...||.+|
T Consensus       114 ---~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          114 ---QSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANLY  165 (167)
T ss_dssp             ------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred             ---cccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHHh
Confidence               0111 1345577888999999999999999887653222 24577777777665

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.54  E-value=0.0037  Score=47.84  Aligned_cols=79  Identities=18%  Similarity=0.093  Sum_probs=57.5

Q ss_pred             CCCHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy1863         197 TYNSAAFVNLGNCAMARED---YVKGKELYVHALDNDA-TCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLY  272 (425)
Q Consensus       197 p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  272 (425)
                      +-++.+.+++|.++....+   ..+++.+++..+...| ..-+.++.+|..+.++|+|++|..+.+..++..|++..+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            4566777777777777654   3467778888777777 35667778888888888888888888888888887776654


Q ss_pred             HHH
Q psy1863         273 QIA  275 (425)
Q Consensus       273 ~la  275 (425)
                      ...
T Consensus       116 Lk~  118 (144)
T 1y8m_A          116 LKS  118 (144)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.50  E-value=0.0016  Score=49.25  Aligned_cols=74  Identities=18%  Similarity=0.118  Sum_probs=40.3

Q ss_pred             CHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy1863         199 NSAAFVNLGNCAMARED---YVKGKELYVHALDNDAT-CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLY  272 (425)
Q Consensus       199 ~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  272 (425)
                      ++.+.+++|.++.+..+   ..+++.+++..++.+|. .-+.++.+|..+.++|+|++|..+.+..++..|++..+..
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~  116 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  116 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence            34455555555554433   23455555555555552 3455556666666666666666666666666665555443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=97.25  E-value=0.055  Score=49.73  Aligned_cols=96  Identities=14%  Similarity=0.084  Sum_probs=64.4

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCH-
Q psy1863         134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD---TYNS-  200 (425)
Q Consensus       134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~-  200 (425)
                      ...+...+|..|+..|+|.+|.+++.+..         ....+++.....+|...+++.++...+.++....   +.++ 
T Consensus        98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~  177 (394)
T 3txn_A           98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK  177 (394)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence            33445678888888888888888887776         1224556666777778888888887777775443   1222 


Q ss_pred             ---HHHHHHHHHHH-HhcCHHHHHHHHHHHHhc
Q psy1863         201 ---AAFVNLGNCAM-AREDYVKGKELYVHALDN  229 (425)
Q Consensus       201 ---~~~~~la~~~~-~~g~~~~A~~~~~~al~~  229 (425)
                         .....-|..++ ..++|..|-.+|-+++..
T Consensus       178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence               22344466667 677888887777777644

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.24  E-value=0.0038  Score=47.16  Aligned_cols=71  Identities=17%  Similarity=0.166  Sum_probs=41.1

Q ss_pred             hhHHHHHHHHHHHHcCCH---HHHHHHHHhcc---c-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy1863         134 AQDLEINKAVTFLRMNDV---SQAVDVLKSCD---E-MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFV  204 (425)
Q Consensus       134 ~~~~~~~~a~~~~~~g~~---~~A~~~~~~~~---~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  204 (425)
                      +.+..++.|+.+.+..+.   .+++.+++..+   | ..-+.++.+|..+++.|+|++|..+.+.+++..|++..+..
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~  116 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  116 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence            445556666666666533   34555555554   2 34455666666666666666666666666666666655543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.17  E-value=0.0055  Score=46.90  Aligned_cols=52  Identities=8%  Similarity=0.069  Sum_probs=24.5

Q ss_pred             HHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHH
Q psy1863         185 AEKMAEEACTADTY-NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEA  236 (425)
Q Consensus       185 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  236 (425)
                      ++..++..+...|. .-+.++.+|..+.+.|+|++|..+.+..++..|++.++
T Consensus        61 GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA  113 (144)
T 1y8m_A           61 GVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  113 (144)
T ss_dssp             HHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred             HHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence            44444444444442 22444445555555555555555555555555544443

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=97.11  E-value=0.066  Score=42.08  Aligned_cols=91  Identities=14%  Similarity=0.094  Sum_probs=52.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C---------------CCCHH
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA--D---------------TYNSA  201 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~---------------p~~~~  201 (425)
                      +.++.+++-.|.+..++-++...  +...+.+.-+.||....+|..|+..++..+.-  +               |.+.+
T Consensus        37 lL~~I~LyyngEY~R~Lf~L~~l--NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkE  114 (242)
T 3kae_A           37 MLMSIVLYLNGEYTRALFHLHKL--NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEE  114 (242)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTC--CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHH
T ss_pred             hhhhhhhhhcchHhHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHH
Confidence            45566666666666666555543  44445555666666666666666666666621  1               22222


Q ss_pred             -HHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Q psy1863         202 -AFVNLGNCAMAREDYVKGKELYVHALDNDA  231 (425)
Q Consensus       202 -~~~~la~~~~~~g~~~~A~~~~~~al~~~~  231 (425)
                       .+..+|.++.+.|+.++|+.+|.......|
T Consensus       115 fFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~  145 (242)
T 3kae_A          115 FFESLLGDLCTLSGYREEGIGHYVRSFGKSF  145 (242)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhcCHHHhhhHhhhhcCCcc
Confidence             244456666666666666666666665544

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.79  E-value=0.07  Score=49.06  Aligned_cols=161  Identities=9%  Similarity=0.025  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcc--------cchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCC----HH--
Q psy1863         137 LEINKAVTFLRMNDVSQAVDVLKSCD--------EMTSSAATNLSFIYFL-QGEVEQAEKMAEEACTADTYN----SA--  201 (425)
Q Consensus       137 ~~~~~a~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~----~~--  201 (425)
                      ..+.+|..|...|++++-..++....        ...+.....+-..+.. -+..+.-+..+..+++-..+.    ..  
T Consensus        21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~  100 (394)
T 3txn_A           21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS  100 (394)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34788999999999999998888776        2222333333333333 345555566666666543222    12  


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCH----
Q psy1863         202 AFVNLGNCAMAREDYVKGKELYVHALDNDAT------CIEALYNLGLAHKHLNEYSDSLECFHKLQAIV---PSMP----  268 (425)
Q Consensus       202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~----  268 (425)
                      .-..+|..|+..|+|.+|.+.+.+.++-...      -.+++..-..+|...|++.++...+.++....   +.+|    
T Consensus       101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a  180 (394)
T 3txn_A          101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG  180 (394)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence            2347899999999999999998888764211      25567777888999999999999998886553   1233    


Q ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhc
Q psy1863         269 EVLYQIASLYE-ITGDVEQASDVNENLLLEA  298 (425)
Q Consensus       269 ~~~~~la~~~~-~~g~~~~A~~~~~~~a~~~  298 (425)
                      .....-|..+. ..++|..|...|-+ +.+.
T Consensus       181 ~i~~~~Gi~~l~~~rdyk~A~~~F~e-af~~  210 (394)
T 3txn_A          181 ALDLQSGILHAADERDFKTAFSYFYE-AFEG  210 (394)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHH-HHHH
T ss_pred             HHHHHhhHHHHHhccCHHHHHHHHHH-HHhc
Confidence            23455677788 79999999999888 7643

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.64  E-value=0.17  Score=39.77  Aligned_cols=116  Identities=14%  Similarity=0.050  Sum_probs=69.5

Q ss_pred             HHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q psy1863         146 LRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVH  225 (425)
Q Consensus       146 ~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  225 (425)
                      ++-.+++.++-+-.-..|..++....++.+++..|+|..|+-++.     .-+...+.+.-+.||...++|..|+.++++
T Consensus        13 ~kY~dYdt~~fLsa~L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~   87 (242)
T 3kae_A           13 IRYRDYETAIFLAACLLPCKPEYRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLES   87 (242)
T ss_dssp             HHTTCHHHHHHHHHHHC----CTHHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhcccccHHHHHHHHHccCChHHHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566665533222226666666777888888888888776664     345566677777888888888888888888


Q ss_pred             HHhc----C-------------cCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy1863         226 ALDN----D-------------ATCI-EALYNLGLAHKHLNEYSDSLECFHKLQAIVPS  266 (425)
Q Consensus       226 al~~----~-------------~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  266 (425)
                      .+.-    +             |.+. ..+..+|.++.+.|+.++|+.++.......|-
T Consensus        88 il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l  146 (242)
T 3kae_A           88 ILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL  146 (242)
T ss_dssp             HHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence            8732    2             2222 23344555556666666666666655555553

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.50  E-value=0.23  Score=46.75  Aligned_cols=95  Identities=9%  Similarity=0.106  Sum_probs=55.7

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCCH--
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACT---ADTYNS--  200 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~--  200 (425)
                      ..+...++..+...|++.+|..++....         ....+.+.....+|...+++.+|...+.++..   ..+..+  
T Consensus       137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l  216 (445)
T 4b4t_P          137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL  216 (445)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence            3445566677777777777776666654         22345555666666666777776666666531   122222  


Q ss_pred             --HHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q psy1863         201 --AAFVNLGNCAMAREDYVKGKELYVHALDN  229 (425)
Q Consensus       201 --~~~~~la~~~~~~g~~~~A~~~~~~al~~  229 (425)
                        ..+...|..+...++|.+|-.+|..++..
T Consensus       217 k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          217 KLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence              23455566666666666666666666543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.39  E-value=0.042  Score=54.89  Aligned_cols=111  Identities=11%  Similarity=-0.009  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HH-hcCHHHHHHHHHHHHhc--------CcCc----------HHHHHHH
Q psy1863         182 VEQAEKMAEEACTADTYNSAAFVNLGNCA--MA-REDYVKGKELYVHALDN--------DATC----------IEALYNL  240 (425)
Q Consensus       182 ~~~A~~~~~~al~~~p~~~~~~~~la~~~--~~-~g~~~~A~~~~~~al~~--------~~~~----------~~~~~~l  240 (425)
                      ++.|+..+++....+|.....+. .+.+.  .. ..+--+|+....+.++.        .+.+          ...+...
T Consensus       265 ~~~a~~~le~L~~~~p~~~~~~~-~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Q  343 (754)
T 4gns_B          265 VDFTIDYLKGLTKKDPIHDIYYK-TAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQ  343 (754)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCchhHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHH
Confidence            46677777777777775543221 11111  11 12334556655555531        1111          2234445


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863         241 GLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNEN  293 (425)
Q Consensus       241 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  293 (425)
                      +..+...|+++-|+.+-++++...|..-.+|+.|+.+|..+|+++.|+-.+..
T Consensus       344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS  396 (754)
T 4gns_B          344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS  396 (754)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence            66666777888888888888888888888888888888888888887766665

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.31  E-value=0.019  Score=57.32  Aligned_cols=112  Identities=16%  Similarity=0.193  Sum_probs=80.5

Q ss_pred             cCC-HHHHHHHHHhcc---cchHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhc--------CCCCH----------HH
Q psy1863         148 MND-VSQAVDVLKSCD---EMTSSAATNLSFIYF---LQGEVEQAEKMAEEACTA--------DTYNS----------AA  202 (425)
Q Consensus       148 ~g~-~~~A~~~~~~~~---~~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~--------~p~~~----------~~  202 (425)
                      .++ ++.|+.++++..   |.. .+++..+.+..   ...+--+|+....++++.        .+.+.          ..
T Consensus       261 t~~~~~~a~~~le~L~~~~p~~-~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L  339 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKDPIH-DIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL  339 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhCCch-hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence            444 688999998877   322 23333333222   123445677777777642        22222          23


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863         203 FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKL  260 (425)
Q Consensus       203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  260 (425)
                      +..-+..+...|+++-|+++.++++...|+...+|+.|+.+|..+|+|+.|+-.++.+
T Consensus       340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            4455777788999999999999999999999999999999999999999999887665

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.96  E-value=0.049  Score=51.86  Aligned_cols=80  Identities=19%  Similarity=0.107  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH
Q psy1863         167 SAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKH  246 (425)
Q Consensus       167 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  246 (425)
                      ..+..||.+....+.++.|..+|.+|..+.|++...++.||.+....|+.-+|+-+|.+++......+.+..|+...+..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            35667888888888888899999999999999999999999988888888888888888888776678888888777654

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=95.83  E-value=0.26  Score=50.66  Aligned_cols=98  Identities=4%  Similarity=-0.055  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cCcHHHHHHH
Q psy1863         166 SSAATNLSFIYFLQGEVEQAEKMAEEACTA----DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND-ATCIEALYNL  240 (425)
Q Consensus       166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l  240 (425)
                      ...++.+-..|.+.|+.++|..+|.+..+.    ...+..+|+.+...|.+.|+.++|.++|++..... .-+..+|..+
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            334555555555555555555555443221    12344555555555555555555555555555431 1234445555


Q ss_pred             HHHHHHcCC-HHHHHHHHHHHHhh
Q psy1863         241 GLAHKHLNE-YSDSLECFHKLQAI  263 (425)
Q Consensus       241 a~~~~~~g~-~~~A~~~~~~al~~  263 (425)
                      -.++.+.|+ .++|...|+++...
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHc
Confidence            555555554 24555555555443

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.75  E-value=0.065  Score=50.99  Aligned_cols=79  Identities=14%  Similarity=0.168  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy1863         202 AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI  280 (425)
Q Consensus       202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  280 (425)
                      .+..+|.+..-...++.|..+|.+|..+.|++...++.+|.+....|+.-+|+-+|-+++......+.+..++...+..
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            5678899988889999999999999999999999999999999999999999999999998887789999999888765

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=95.74  E-value=0.41  Score=49.23  Aligned_cols=103  Identities=5%  Similarity=0.019  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHH
Q psy1863         200 SAAFVNLGNCAMAREDYVKGKELYVHALDN----DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV-PSMPEVLYQI  274 (425)
Q Consensus       200 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l  274 (425)
                      ...+..+-..|.+.|+.++|...|......    ..-+..+|+.+-..|.+.|++++|.+.|++..... .-+..+|..+
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            356888999999999999999999775532    23357899999999999999999999999997764 2378889999


Q ss_pred             HHHHHHcCC-HHHHHHHHHHHHHhc--CcchH
Q psy1863         275 ASLYEITGD-VEQASDVNENLLLEA--VRNDA  303 (425)
Q Consensus       275 a~~~~~~g~-~~~A~~~~~~~a~~~--~p~~~  303 (425)
                      ..++.+.|+ .++|..++++ ..+.  .|+..
T Consensus       207 I~glcK~G~~~e~A~~Ll~E-M~~kG~~PD~v  237 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQ-MSQEGLKLQAL  237 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHH-HHHHTCCSHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHH-HHHcCCCCChh
Confidence            999999998 5789999999 5543  45544

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.62  E-value=0.26  Score=45.51  Aligned_cols=111  Identities=14%  Similarity=0.016  Sum_probs=77.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHH-HHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHH
Q psy1863         173 SFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKG-KELYVHALDNDATCIEALYNLGLAHKHLNEYS  251 (425)
Q Consensus       173 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  251 (425)
                      |......|+.+.|...+.+|+.+....+-.-..       ...|-.+ ...+++.      ...+...++..+...|++.
T Consensus       122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-------~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~~g~~~  188 (388)
T 2ff4_A          122 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-------DFQFVEPFATALVED------KVLAHTAKAEAEIACGRAS  188 (388)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-------TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-------chhHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCHH
Confidence            333445688888888888888876332211000       0111111 1111111      1334566788888999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy1863         252 DSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLE  297 (425)
Q Consensus       252 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~  297 (425)
                      +|+..+..++..+|-+..++..+..++...|+..+|+..|++ +..
T Consensus       189 ~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~-~r~  233 (388)
T 2ff4_A          189 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRR-VKT  233 (388)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHH
Confidence            999999999999999999999999999999999999999988 543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.60  E-value=0.34  Score=38.78  Aligned_cols=101  Identities=18%  Similarity=0.090  Sum_probs=58.9

Q ss_pred             HHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q psy1863         144 TFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELY  223 (425)
Q Consensus       144 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  223 (425)
                      ..+..|+++.|.++.+..  ++...|..+|......|+++-|..+|.++-.        +-.+...|...|+.+.-.+.-
T Consensus        14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kla   83 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKMQ   83 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHHH
Confidence            456677888887776664  5566777788888888888877777776432        223334445556655544443


Q ss_pred             HHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863         224 VHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHK  259 (425)
Q Consensus       224 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  259 (425)
                      +.+.....     +.....+++.+|+++++++.|.+
T Consensus        84 ~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           84 NIAQTRED-----FGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence            33332221     11223345566677776666643

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.55  E-value=0.28  Score=45.27  Aligned_cols=108  Identities=11%  Similarity=-0.035  Sum_probs=75.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhcc-----cchHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy1863         140 NKAVTFLRMNDVSQAVDVLKSCD-----EMTSSAATNLSFIYFLQGEVEQA-EKMAEEACTADTYNSAAFVNLGNCAMAR  213 (425)
Q Consensus       140 ~~a~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~lg~~~~~~g~~~~A-~~~~~~al~~~p~~~~~~~~la~~~~~~  213 (425)
                      ..|......|+.+.|...+.+++     +..+...         .+.+-.+ ...+++.      ...+...++..+...
T Consensus       120 ~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~---------~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~~  184 (388)
T 2ff4_A          120 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR---------DFQFVEPFATALVED------KVLAHTAKAEAEIAC  184 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT---------TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC---------chhHHHHHHHHHHHH------HHHHHHHHHHHHHHC
Confidence            33455566789999999999987     1111110         0111111 1111111      112445677788899


Q ss_pred             cCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1863         214 EDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQA  262 (425)
Q Consensus       214 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  262 (425)
                      |++.+|+..+..++..+|-+-.++..+-.++...|+..+|+..|+++-+
T Consensus       185 g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          185 GRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999987644

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.54  E-value=0.61  Score=37.29  Aligned_cols=99  Identities=11%  Similarity=0.032  Sum_probs=49.4

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHH
Q psy1863         177 FLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC  256 (425)
Q Consensus       177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~  256 (425)
                      ...|+++.|.+..+..     ++...|..+|......|+++-|..+|.++-.        +..+..+|.-.|+.+.-...
T Consensus        16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kl   82 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKM   82 (177)
T ss_dssp             HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHH
Confidence            3456666666665543     4556666666666666666666666665421        11233334444554433333


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863         257 FHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNEN  293 (425)
Q Consensus       257 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  293 (425)
                      -+.+....  +   +.....++..+|+++++++.|.+
T Consensus        83 a~iA~~~g--~---~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           83 QNIAQTRE--D---FGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHTT--C---HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHCc--c---HHHHHHHHHHcCCHHHHHHHHHH
Confidence            33322211  1   11122334556666666666655

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.45  E-value=0.26  Score=50.11  Aligned_cols=47  Identities=15%  Similarity=0.040  Sum_probs=28.3

Q ss_pred             HHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863         144 TFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEA  192 (425)
Q Consensus       144 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  192 (425)
                      ..+..|+++.|.++.+..  .++..|..+|..+...|+++.|+.+|.++
T Consensus       661 ~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          661 LALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            345566666666655443  44556666666666666666666666654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.30  E-value=0.37  Score=41.32  Aligned_cols=120  Identities=14%  Similarity=0.107  Sum_probs=80.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHH
Q psy1863         175 IYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSL  254 (425)
Q Consensus       175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~  254 (425)
                      ..+..|+.++|+......++.+|.+......+...+.-.|+|+.|.+-++.+.+++|+....-..+..+       =.|.
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l-------I~aE   78 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL-------VKAA   78 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH-------HHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH-------HHHH
Confidence            356778999999999999999999999999999999999999999999999999998864432111111       0111


Q ss_pred             HHHHHHHhh--CC---CCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHhcCcch
Q psy1863         255 ECFHKLQAI--VP---SMPEVLY---QIASLYEITGDVEQASDVNENLLLEAVRND  302 (425)
Q Consensus       255 ~~~~~al~~--~p---~~~~~~~---~la~~~~~~g~~~~A~~~~~~~a~~~~p~~  302 (425)
                      ..=.+.+.-  .|   ..+..|.   .-+......|+.++|...-.+ +.+.-|..
T Consensus        79 ~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~-A~e~ap~~  133 (273)
T 1zbp_A           79 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQ-IEELRQEK  133 (273)
T ss_dssp             HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCCCC
T ss_pred             HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHH-HHhcCccc
Confidence            111222221  12   2333333   334455567999999888888 87776543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.97  E-value=2.3  Score=39.84  Aligned_cols=184  Identities=5%  Similarity=-0.007  Sum_probs=107.0

Q ss_pred             hhhhhhHHHHHHHHHh---cCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHH---HHHHHHHHHH-cCC
Q psy1863         112 DNFSNGYNWCVQSIRN---SAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSA---ATNLSFIYFL-QGE  181 (425)
Q Consensus       112 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~---~~~lg~~~~~-~g~  181 (425)
                      +++..+.+.+...-+.   .........+...+...+...|+++...+.+.-..   .....+   ......-+.. ...
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~  109 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS  109 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence            4555555554443332   23333345666677788888899988766554433   111111   1111111211 111


Q ss_pred             HHHHHHHHHHHHhcC----CC-------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----Cc--CcHHHHHHHHHHH
Q psy1863         182 VEQAEKMAEEACTAD----TY-------NSAAFVNLGNCAMAREDYVKGKELYVHALDN----DA--TCIEALYNLGLAH  244 (425)
Q Consensus       182 ~~~A~~~~~~al~~~----p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~--~~~~~~~~la~~~  244 (425)
                      .+.  ......+..-    .+       .......|+.++...|++.+|...+.....-    .+  .-...+.....+|
T Consensus       110 ~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~  187 (445)
T 4b4t_P          110 LDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS  187 (445)
T ss_dssp             THH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred             hhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            111  1111122111    11       2344677899999999999999888887632    11  1155777788888


Q ss_pred             HHcCCHHHHHHHHHHHHh---hCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy1863         245 KHLNEYSDSLECFHKLQA---IVPSMP----EVLYQIASLYEITGDVEQASDVNENLLLEA  298 (425)
Q Consensus       245 ~~~g~~~~A~~~~~~al~---~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~a~~~  298 (425)
                      ...+++..|...+.++..   ..+..+    ..+...|..+...++|.+|..+|.. +...
T Consensus       188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e-~~~~  247 (445)
T 4b4t_P          188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQE-IYQT  247 (445)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-HHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHhc
Confidence            899999999988888632   233333    3456778888888999999888888 6653

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.87  E-value=0.4  Score=41.05  Aligned_cols=60  Identities=15%  Similarity=0.122  Sum_probs=52.0

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         243 AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      -..+.|.+++|++.....++..|.+......+..+++-.|+++.|..-++. +.+++|+..
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~-~a~l~p~~~   65 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQ-SIKLFPEYL   65 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCGGGH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHhCchhh
Confidence            345678889999999999999999999988899999999999999999988 888888866

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.83  E-value=0.47  Score=48.17  Aligned_cols=131  Identities=18%  Similarity=0.148  Sum_probs=62.5

Q ss_pred             HHHHcCCHHHHHH-HHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q psy1863         144 TFLRMNDVSQAVD-VLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKEL  222 (425)
Q Consensus       144 ~~~~~g~~~~A~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  222 (425)
                      .....+++++|.. ++... +. ......+...+...|.+++|+...+        ++...+   ......|++++|.+.
T Consensus       608 ~~~~~~~~~~a~~~~l~~i-~~-~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~A~~~  674 (814)
T 3mkq_A          608 TLTLRGEIEEAIENVLPNV-EG-KDSLTKIARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTLARDL  674 (814)
T ss_dssp             HHHHTTCHHHHHHHTGGGC-CC-HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHhcC-Cc-hHHHHHHHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHHHHHH
Confidence            3345667776665 33211 20 1122444555555666666554432        111111   223455666666555


Q ss_pred             HHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy1863         223 YVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI--------VPSMPEVLYQIASLYEITGDVEQASDVNE  292 (425)
Q Consensus       223 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~  292 (425)
                      .+.     .++...|..+|..+.+.|+++.|..+|.++-..        ...+...+..++......|++..|..+|.
T Consensus       675 ~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~  747 (814)
T 3mkq_A          675 LTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYW  747 (814)
T ss_dssp             HTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            322     244556666666666666666666666554111        12334444444555555555555544443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.36  E-value=0.31  Score=45.60  Aligned_cols=101  Identities=13%  Similarity=0.062  Sum_probs=71.5

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cCc----HH
Q psy1863         165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTADT---YNSAAFVNLGNCAMAREDYVKGKELYVHALDND--ATC----IE  235 (425)
Q Consensus       165 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~----~~  235 (425)
                      ...++..+|..|...|++++|.+.|.++.....   .....+..+..++...+++..+..++.++....  ..+    ..
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~  209 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR  209 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence            345667788888888888888888877765532   234667777778888888888888888876541  111    23


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy1863         236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVP  265 (425)
Q Consensus       236 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p  265 (425)
                      .....|.++...++|.+|-..|-.++....
T Consensus       210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          210 YKTYYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence            444567777888999999999888876654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=93.90  E-value=0.99  Score=48.03  Aligned_cols=30  Identities=17%  Similarity=0.141  Sum_probs=16.5

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEA  192 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  192 (425)
                      +.++...+.+|.++...|++++|..+|+++
T Consensus       839 ~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka  868 (1139)
T 4fhn_B          839 NSDPIAVYLKALIYLKSKEAVKAVRCFKTT  868 (1139)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            444444455555555555555555555554

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.19  E-value=0.097  Score=49.51  Aligned_cols=124  Identities=6%  Similarity=-0.033  Sum_probs=57.7

Q ss_pred             HHHHHHcCCHHHHHHHHHhcc--------------cchHHHHHHHHHHHHHcCCHHHHHH----------HHHHHHh---
Q psy1863         142 AVTFLRMNDVSQAVDVLKSCD--------------EMTSSAATNLSFIYFLQGEVEQAEK----------MAEEACT---  194 (425)
Q Consensus       142 a~~~~~~g~~~~A~~~~~~~~--------------~~~~~~~~~lg~~~~~~g~~~~A~~----------~~~~al~---  194 (425)
                      -..++..+++++|.++-...+              .-.+.+|+..+.++...|+......          .+-.+++   
T Consensus       143 ~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~  222 (523)
T 4b4t_S          143 QLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIAS  222 (523)
T ss_dssp             ------------------------------------------------------------CHHHHHHHHTHHHHHHHHCC
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Confidence            345567788888887765443              4456678888888877777665321          2222222   


Q ss_pred             --cCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy1863         195 --ADTYN-SAAFVNLGNCAMAREDYVKGKELYVHALDNDATC-------IEALYNLGLAHKHLNEYSDSLECFHKLQAIV  264 (425)
Q Consensus       195 --~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  264 (425)
                        .++.. ...++.+-..|...+.|+.|..+..++.  .|..       ...++.+|.++.-.++|.+|.+++..|++..
T Consensus       223 lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka  300 (523)
T 4b4t_S          223 LKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA  300 (523)
T ss_dssp             SCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred             cccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence              22322 3557778888999999999999999985  3321       4567788999999999999999999999987


Q ss_pred             CCC
Q psy1863         265 PSM  267 (425)
Q Consensus       265 p~~  267 (425)
                      |.+
T Consensus       301 p~~  303 (523)
T 4b4t_S          301 PHN  303 (523)
T ss_dssp             SCS
T ss_pred             Ccc
Confidence            754

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.85  E-value=0.52  Score=44.11  Aligned_cols=97  Identities=12%  Similarity=0.068  Sum_probs=78.0

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCH----HH
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD--TYNS----AA  202 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~----~~  202 (425)
                      .+....+|..+...|++++|.++|.++.      ....+.+..+..++...+++..+..++.++-...  ..++    ..
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l  210 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY  210 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence            3445789999999999999999999987      4567888889999999999999999999986552  2222    23


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Q psy1863         203 FVNLGNCAMAREDYVKGKELYVHALDNDA  231 (425)
Q Consensus       203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~  231 (425)
                      ....|..+...++|.+|-.+|-.++....
T Consensus       211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          211 KTYYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence            44557778889999999999998876643

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=92.24  E-value=2.9  Score=31.68  Aligned_cols=80  Identities=15%  Similarity=0.200  Sum_probs=41.6

Q ss_pred             cCCHHHHHHHHHhcccchHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy1863         148 MNDVSQAVDVLKSCDEMTSSAATNLS-FIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHA  226 (425)
Q Consensus       148 ~g~~~~A~~~~~~~~~~~~~~~~~lg-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  226 (425)
                      .|+...-+.+|-+.- ...+ +..+| .....+|+-++-.+.+...+...+-++..++.+|.+|.+.|+..+|.+.+.+|
T Consensus        74 C~NlKrVi~C~~~~n-~~se-~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A  151 (172)
T 1wy6_A           74 CQNLKSVVECGVINN-TLNE-HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEA  151 (172)
T ss_dssp             CSCTHHHHHHHHHTT-CCCH-HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhcHHHHHHHHHHhc-chHH-HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            445555555554442 1111 12222 23344566666555555555555556666666666666666666666666666


Q ss_pred             Hhc
Q psy1863         227 LDN  229 (425)
Q Consensus       227 l~~  229 (425)
                      .+.
T Consensus       152 C~k  154 (172)
T 1wy6_A          152 CKK  154 (172)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            543

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.52  E-value=3.1  Score=39.45  Aligned_cols=147  Identities=14%  Similarity=0.144  Sum_probs=79.6

Q ss_pred             cchhhHHHHHHHHHHHHcCCHHHHH--------------HHHHhcc-----cchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863         131 SSLAQDLEINKAVTFLRMNDVSQAV--------------DVLKSCD-----EMTSSAATNLSFIYFLQGEVEQAEKMAEE  191 (425)
Q Consensus       131 ~~~~~~~~~~~a~~~~~~g~~~~A~--------------~~~~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  191 (425)
                      ..+++.+|+-.+.++-..|+.....              ..++.+.     ...+..++.+-..|...+.+++|..+..+
T Consensus       177 D~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk  256 (523)
T 4b4t_S          177 NLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISK  256 (523)
T ss_dssp             --------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhc
Confidence            3445666665555565566554321              1233333     34567788889999999999999999999


Q ss_pred             HHhcCCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcH-------HHHHHHHHHHHHcCCHHHHHHHH
Q psy1863         192 ACTADTYN-------SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCI-------EALYNLGLAHKHLNEYSDSLECF  257 (425)
Q Consensus       192 al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~  257 (425)
                      +.  .|.+       ...++.+|.++.-+++|.+|..++..|+...|.+.       .++..+..+-.-+|+..+- ..|
T Consensus       257 ~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~r-~lf  333 (523)
T 4b4t_S          257 LE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPEL-SFF  333 (523)
T ss_dssp             HC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCCH-HHH
T ss_pred             Cc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCCh-HHh
Confidence            85  4432       34578889999999999999999999999877542       2333344444445664431 111


Q ss_pred             HHHHhhCCCC---HHHHHHHHHHHHHcCCHHH
Q psy1863         258 HKLQAIVPSM---PEVLYQIASLYEITGDVEQ  286 (425)
Q Consensus       258 ~~al~~~p~~---~~~~~~la~~~~~~g~~~~  286 (425)
                           ..|..   ...|..++.++ +.|+...
T Consensus       334 -----~q~~l~~~L~pY~~Lv~Av-r~GdL~~  359 (523)
T 4b4t_S          334 -----HQSNMQKSLLPYYHLTKAV-KLGDLKK  359 (523)
T ss_dssp             -----TTTSCHHHHHHHHHHHHHH-HHTCHHH
T ss_pred             -----hchhHHHHHHHHHHHHHHH-HcCCHHH
Confidence                 11222   23466666665 4576654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.07  E-value=1.1  Score=47.70  Aligned_cols=118  Identities=12%  Similarity=-0.058  Sum_probs=86.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---C------------------
Q psy1863         172 LSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN---D------------------  230 (425)
Q Consensus       172 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~------------------  230 (425)
                      +...+...|.++-+..    .+...|.++...+.+|.++...|++++|..+|+++-..   +                  
T Consensus       818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~  893 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH  893 (1139)
T ss_dssp             HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred             HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence            3444555566654433    33456778888899999999999999999999887421   0                  


Q ss_pred             --cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863         231 --ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS-MP----EVLYQIASLYEITGDVEQASDVNEN  293 (425)
Q Consensus       231 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~----~~~~~la~~~~~~g~~~~A~~~~~~  293 (425)
                        ...+..|..+..++.+.|.++.+++....|++..+. +.    ..|.++-..+..+|+|++|...+..
T Consensus       894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~  963 (1139)
T 4fhn_B          894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV  963 (1139)
T ss_dssp             SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence              112456677888888999999999999999987653 32    2577788888999999999777655

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=90.67  E-value=13  Score=36.28  Aligned_cols=161  Identities=11%  Similarity=0.021  Sum_probs=100.4

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc----------------cchHH-------------HHHHHHHHHHHcCCHHHH
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD----------------EMTSS-------------AATNLSFIYFLQGEVEQA  185 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~----------------~~~~~-------------~~~~lg~~~~~~g~~~~A  185 (425)
                      .+.........+..|+...|..+...+-                |....             ....++.......+.+.|
T Consensus       154 ~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar~d~~~A  233 (618)
T 1qsa_A          154 PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENA  233 (618)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHhcCHHHH
Confidence            3334455667777788777776655531                22111             122334445556688888


Q ss_pred             HHHHHHHHhcCCCCHHH----HHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863         186 EKMAEEACTADTYNSAA----FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQ  261 (425)
Q Consensus       186 ~~~~~~al~~~p~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  261 (425)
                      ...+.......+.+...    +..++......+...++...+.+.....+++...-...+. ..+.|+++.|...|...-
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~-Alr~~d~~~a~~~~~~l~  312 (618)
T 1qsa_A          234 RLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRM-ALGTGDRRGLNTWLARLP  312 (618)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHH-HHHHTCHHHHHHHHHHSC
T ss_pred             HHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHH-HHHCCCHHHHHHHHHHcc
Confidence            88888776544444332    2233333334453556777777766554444433334444 446799999999997654


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy1863         262 AIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLE  297 (425)
Q Consensus       262 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~  297 (425)
                      ...+..+...+-+|..+..+|+.++|..+|++ +..
T Consensus       313 ~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~-~a~  347 (618)
T 1qsa_A          313 MEAKEKDEWRYWQADLLLERGREAEAKEILHQ-LMQ  347 (618)
T ss_dssp             TTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHH-HHT
T ss_pred             ccccccHhHHHHHHHHHHHcCCHHHHHHHHHH-Hhc
Confidence            43335677889999999999999999999998 654

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=90.55  E-value=0.47  Score=32.64  Aligned_cols=35  Identities=11%  Similarity=0.029  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863          11 MEQEIIGLIDESCICARNQDFKAALEKAKLASNKE   45 (425)
Q Consensus        11 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~   45 (425)
                      ..++...++.+|+..-..|+|++|+..+++|+..-
T Consensus        15 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l   49 (83)
T 2w2u_A           15 LEEMARKYAINAVKADKEGNAEEAITNYKKAIEVL   49 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            46778899999999999999999999999998755

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=88.49  E-value=0.71  Score=31.77  Aligned_cols=35  Identities=11%  Similarity=-0.037  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863          11 MEQEIIGLIDESCICARNQDFKAALEKAKLASNKE   45 (425)
Q Consensus        11 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~   45 (425)
                      +..+...++.+|+..-..|+|++|+.++++|+..-
T Consensus         7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l   41 (83)
T 2v6y_A            7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVL   41 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            55678899999999999999999999999998754

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=88.17  E-value=19  Score=37.01  Aligned_cols=146  Identities=15%  Similarity=0.115  Sum_probs=88.1

Q ss_pred             HHHcCCHHHHHHHHHhccc----c----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---C---CH----HHHHHH
Q psy1863         145 FLRMNDVSQAVDVLKSCDE----M----TSSAATNLSFIYFLQGEVEQAEKMAEEACTADT---Y---NS----AAFVNL  206 (425)
Q Consensus       145 ~~~~g~~~~A~~~~~~~~~----~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~---~~----~~~~~l  206 (425)
                      ....|+.++++..+.+.++    .    ..-+.+.+|.++...+  .+++.++...+..+.   .   +.    .+...+
T Consensus       384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL  461 (963)
T 4ady_A          384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI  461 (963)
T ss_dssp             HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred             hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence            4455777788988888874    1    2445666777666555  467887777775432   1   11    345677


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCcCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy1863         207 GNCAMAREDYVKGKELYVHALDNDATC--IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDV  284 (425)
Q Consensus       207 a~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  284 (425)
                      |.++...++ +++...+...+..+...  ..+-..+|.++...|+-+.....+..+.....+...-...+|..+...|+.
T Consensus       462 Gla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~  540 (963)
T 4ady_A          462 GLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ  540 (963)
T ss_dssp             HHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred             HHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence            777776665 46677777777644322  235567788888888866555555555543222222223344445566787


Q ss_pred             HHHHHHHHH
Q psy1863         285 EQASDVNEN  293 (425)
Q Consensus       285 ~~A~~~~~~  293 (425)
                      +.+-...+.
T Consensus       541 e~~~~li~~  549 (963)
T 4ady_A          541 ELADDLITK  549 (963)
T ss_dssp             GGGHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777666665

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=86.50  E-value=1  Score=31.71  Aligned_cols=35  Identities=6%  Similarity=0.037  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863          11 MEQEIIGLIDESCICARNQDFKAALEKAKLASNKE   45 (425)
Q Consensus        11 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~   45 (425)
                      +..+...++..|+..-..|+|++|+..+.+|+..-
T Consensus        11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l   45 (93)
T 1wfd_A           11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDML   45 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            45677889999999999999999999999998765

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=84.86  E-value=1.4  Score=30.39  Aligned_cols=35  Identities=9%  Similarity=-0.004  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863          11 MEQEIIGLIDESCICARNQDFKAALEKAKLASNKE   45 (425)
Q Consensus        11 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~   45 (425)
                      +..+...++.+|+..-..|+|++|+..+.+|+..-
T Consensus         9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l   43 (85)
T 2v6x_A            9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYL   43 (85)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            34577889999999999999999999999998865

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=84.20  E-value=1.4  Score=30.51  Aligned_cols=32  Identities=6%  Similarity=-0.013  Sum_probs=28.7

Q ss_pred             HHHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863          14 EIIGLIDESCICARNQDFKAALEKAKLASNKE   45 (425)
Q Consensus        14 ~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~   45 (425)
                      +...|+.+|+..-..|+|++|+..|.+|+..-
T Consensus        15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~l   46 (86)
T 4a5x_A           15 AAATVLKRAVELDSESRYPQALVCYQEGIDLL   46 (86)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            45779999999999999999999999998755

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=83.94  E-value=1.4  Score=32.58  Aligned_cols=36  Identities=17%  Similarity=0.113  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863          10 RMEQEIIGLIDESCICARNQDFKAALEKAKLASNKE   45 (425)
Q Consensus        10 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~   45 (425)
                      .+..+...|+.+|+..-..|+|++|+.+|.+|+..-
T Consensus        13 ~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l   48 (117)
T 2cpt_A           13 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYF   48 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            355778899999999999999999999999999865

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=82.95  E-value=11  Score=39.23  Aligned_cols=48  Identities=13%  Similarity=-0.049  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHH----HHHHHHHHHHHc
Q psy1863         234 IEALYNLGLAHKHLNEYSDSLECFHKLQAIV-PSMPE----VLYQIASLYEIT  281 (425)
Q Consensus       234 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~----~~~~la~~~~~~  281 (425)
                      ...|.....++...+-++-++...+.|++.. ++++.    .|..+-......
T Consensus       897 ~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~  949 (950)
T 4gq2_M          897 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA  949 (950)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence            4467788888888899999999998888754 34443    444444444433

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=80.05  E-value=31  Score=30.35  Aligned_cols=113  Identities=6%  Similarity=-0.029  Sum_probs=56.7

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHH
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA-----DTYNSAAFVNLGNC  209 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~  209 (425)
                      ...+..++.-|.+++++++|++++...           +..+...|++..|.....-.++.     .|-+......+..+
T Consensus        33 hQ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l  101 (312)
T 2wpv_A           33 HQTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL  101 (312)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            344456677777788888888765543           33333344444443332222211     12223333333333


Q ss_pred             HHHhcCHH-HHHHHHHHHHhc-------CcCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy1863         210 AMAREDYV-KGKELYVHALDN-------DATCIEALYNLGLAHKHLNEYSDSLECFH  258 (425)
Q Consensus       210 ~~~~g~~~-~A~~~~~~al~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~  258 (425)
                      +.....-+ .=.++.+++++-       .-.++..+..+|..|...|++.+|..+|-
T Consensus       102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            32211000 012222333321       22468888888888888888888888774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	425
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-07
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-08
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	8e-06
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	4e-07
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-06
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	5e-05
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	4e-06
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	2e-05
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	6e-06
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	0.003
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	6e-06
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	1e-05
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	2e-05
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	3e-04
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	0.001
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	4e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	5e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.003
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	0.003
d2pqrb1	124	a.118.8.1 (B:5-128) Mitochondria fission protein F	0.004

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (150), Expect = 2e-11
 Identities = 29/135 (21%), Positives = 52/135 (38%)

Query: 161 CDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGK 220
                + A +NL  ++  QGE+  A    E+A T D     A++NLGN       + +  
Sbjct: 164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAV 223

Query: 221 ELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI 280
             Y+ AL           NL   +        +++ + +   + P  P+    +A+  + 
Sbjct: 224 AAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE 283

Query: 281 TGDVEQASDVNENLL 295
            G V +A D     L
Sbjct: 284 KGSVAEAEDCYNTAL 298

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 2e-09
 Identities = 37/209 (17%), Positives = 73/209 (34%), Gaps = 15/209 (7%)

Query: 186 EKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHK 245
           +    +A       + A+ NLG    A+ +       +  A+  D   ++A  NLG   K
Sbjct: 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214

Query: 246 HLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLL------LEAV 299
               +  ++  + +  ++ P+   V   +A +Y   G ++ A D     +       +A 
Sbjct: 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY 274

Query: 300 RNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEI 359
            N A +   +    EAE C  T+ +L     +   +       Q     A     + LE+
Sbjct: 275 CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334

Query: 360 ---------NKAVTFLRMNDVSQAVDVLK 379
                    N A    +   + +A+   K
Sbjct: 335 FPEFAAAHSNLASVLQQQGKLQEALMHYK 363

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 15/88 (17%), Positives = 33/88 (37%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
            L+   +  G+ E AE+   +    +  N+   + L +         +       A+  +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFH 258
               EA  NLG  +K   +  +++E + 
Sbjct: 64  PLLAEAYSNLGNVYKERGQLQEAIEHYR 91

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (127), Expect = 3e-08
 Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 2/112 (1%)

Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
            ++ L  I   Q       K    +C+    +    V+LG+ A  R    + +  Y HA 
Sbjct: 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYICQH--CLVHLGDIARYRNQTSQAESYYRHAA 179

Query: 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE 279
               +  +    L +      ++  ++  + +  A+    P     +     
Sbjct: 180 QLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 8e-06
 Identities = 34/288 (11%), Positives = 73/288 (25%), Gaps = 26/288 (9%)

Query: 24  ICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDA 83
           +    Q  +   +K             L     +A    +E    N +  KN        
Sbjct: 29  VWTSRQALQDLYQKM------------LVTDLEYALDKKVEQDLWN-HAFKNQIT----T 71

Query: 84  LSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAV 143
           L    +   +     +  +  L   +    ++                 +         +
Sbjct: 72  LQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKS---SQLGI 128

Query: 144 TFLRMNDVSQAVDVL-KSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAA 202
              +    S  V     SC  +      +L  I   + +  QAE     A      N   
Sbjct: 129 ISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQP 188

Query: 203 FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQA 262
           +  L   A ++ D++     Y  ++        A  NL  A     E  D ++    +  
Sbjct: 189 YNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSD 248

Query: 263 IVPSMPEVLYQIASLYEITGDVEQASDVNENL--LLEAVRNDALSQLH 308
            + +    +     +Y      + +    +      E +   A +   
Sbjct: 249 FIKAF---IKFHGHVYLSKSLEKLSPLREKLEEQFKELLFQKAFNSQQ 293

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 48.9 bits (116), Expect = 4e-07
 Identities = 16/118 (13%), Positives = 39/118 (33%), Gaps = 1/118 (0%)

Query: 179 QGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALY 238
           +G+++QA ++  EA  A   +++   +         D+ +  E  + ++      +    
Sbjct: 9   EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 68

Query: 239 NLGLAHKHLNEYSDSLECFHK-LQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLL 295
            L    K      D  +                     +L  ++ D EQ S++   + 
Sbjct: 69  QLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIE 126

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 47.0 bits (111), Expect = 2e-06
 Identities = 12/134 (8%), Positives = 40/134 (29%), Gaps = 4/134 (2%)

Query: 146 LRMNDVSQAVDVLK---SCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAA 202
           L    + QA+++L          +S  ++   +  + G+ E+A++   ++          
Sbjct: 7   LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 66

Query: 203 FVNLGNCAMAREDYVKG-KELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQ 261
              L +   A +      +      +  +   +              +Y    E   +++
Sbjct: 67  ASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIE 126

Query: 262 AIVPSMPEVLYQIA 275
            +      +    +
Sbjct: 127 ELRQEKGFLANDTS 140

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 42.3 bits (99), Expect = 5e-05
 Identities = 12/132 (9%), Positives = 33/132 (25%)

Query: 210 AMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPE 269
           A++     +  EL + A+           +         ++  + E   +   + P    
Sbjct: 6   ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 65

Query: 270 VLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEKCILTSAKLIAPS 329
              Q+  L +     +  +       +     +    L         +     ++L    
Sbjct: 66  GASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQI 125

Query: 330 IEDNFSNGYNWC 341
            E     G+   
Sbjct: 126 EELRQEKGFLAN 137

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 4e-06
 Identities = 17/114 (14%), Positives = 41/114 (35%), Gaps = 3/114 (2%)

Query: 205 NLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV 264
           N G  A  ++D+    + +    D  +      +N+G  +  L   +++ + F +     
Sbjct: 10  NEGVLAADKKDWKGALDAFSAVQDPHS---RICFNIGCMYTILKNMTEAEKAFTRSINRD 66

Query: 265 PSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEKC 318
             +    +Q   LY  T   + A    +  L++   N  +      ++ +   C
Sbjct: 67  KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFAC 120

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 26/152 (17%), Positives = 49/152 (32%), Gaps = 17/152 (11%)

Query: 132 SLAQDLEI-NKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAE 190
           SL + + + N+ V      D   A+D   +  +  S    N+  +Y +   + +AEK   
Sbjct: 1   SLVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFT 60

Query: 191 EACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL----------------DNDATCI 234
            +   D + + A+   G      E Y    +    AL                       
Sbjct: 61  RSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFAC 120

Query: 235 EALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266
           E LYN+   +    E+  + E      ++   
Sbjct: 121 EVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 6e-06
 Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 8/117 (6%)

Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
            L    + + + + A K  ++A   D  N     N       + DY K +EL   A++  
Sbjct: 9   ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG 68

Query: 231 ATCIE-------ALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI 280
               E       A   +G ++    +Y D++  ++K  A   + P+VL +     +I
Sbjct: 69  RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKI 124

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 7/120 (5%)

Query: 205 NLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV 264
            LGN A  ++D+    + Y  A + D T +  + N    +    +Y+   E   K   + 
Sbjct: 9   ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG 68

Query: 265 PSMPEVL-------YQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEK 317
               E          +I + Y      + A       L E    D L +  +  K   E+
Sbjct: 69  RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQ 128

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.6 bits (104), Expect = 6e-06
 Identities = 16/164 (9%), Positives = 45/164 (27%), Gaps = 1/164 (0%)

Query: 199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFH 258
           ++      GN       Y +    Y  A+  +        N  L +  + +   +L    
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62

Query: 259 KLQAIVPSMPEVLYQIASLYEITGDVEQA-SDVNENLLLEAVRNDALSQLHREMKHEAEK 317
           +   +     +  + +          ++A +++     L   +              A+K
Sbjct: 63  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 122

Query: 318 CILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINK 361
               S +      E    +     + + R        ++ E ++
Sbjct: 123 KRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHE 166

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.8 bits (102), Expect = 1e-05
 Identities = 26/184 (14%), Positives = 62/184 (33%), Gaps = 6/184 (3%)

Query: 175 IYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCI 234
             F+  +  +A      A T +   +  + N   C +  +   +       AL+ D   +
Sbjct: 13  RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72

Query: 235 EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENL 294
           +A + LG     +  Y +++    +  ++         ++    +I   +  A     N 
Sbjct: 73  KAHFFLGQCQLEMESYDEAIANLQRAYSLAKE-----QRLNFGDDIPSALRIAKKKRWNS 127

Query: 295 LLEAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLA 354
           + E  R    S+LH  +            +    + E +  +G+    Q+   + H    
Sbjct: 128 IEER-RIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYM 186

Query: 355 QDLE 358
            D++
Sbjct: 187 ADMD 190

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 15/106 (14%), Positives = 35/106 (33%), Gaps = 5/106 (4%)

Query: 179 QGEVEQAEKMAEEACTADTYNSAA---FVNLGNCAMAREDYVKGKELYVHALDNDATC-- 233
             ++ + EK  +    A + + +    +          +D  KG  L    L   +    
Sbjct: 12  VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ 71

Query: 234 IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE 279
            + ++ L + +  L EY  +L+    L    P   +       + +
Sbjct: 72  RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 3e-04
 Identities = 8/85 (9%), Positives = 18/85 (21%), Gaps = 1/85 (1%)

Query: 196 DTYNSA-AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSL 254
           D++          +         +          +    +  L  L  A     +   +L
Sbjct: 7   DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKAL 66

Query: 255 ECFHKLQAIVPSMPEVLYQIASLYE 279
               KL  + P        +     
Sbjct: 67  LLTKKLLELDPEHQRANGNLKYFEY 91

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.001
 Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 7/93 (7%)

Query: 164 MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAA-------FVNLGNCAMAREDY 216
           +T+  +  L  + + + +    E   E+A         +          L      + D 
Sbjct: 3   LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL 62

Query: 217 VKGKELYVHALDNDATCIEALYNLGLAHKHLNE 249
            K   L    L+ D     A  NL      + +
Sbjct: 63  DKALLLTKKLLELDPEHQRANGNLKYFEYIMAK 95

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 4e-04
 Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 2/121 (1%)

Query: 175 IYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCI 234
            YF   + E A K   +A   +  N+  + N     +  E Y         A++ D   I
Sbjct: 19  DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI 78

Query: 235 EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT--GDVEQASDVNE 292
           +  Y    ++  L ++  +L  +  +  + P   +   +     +I      E+A   +E
Sbjct: 79  KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 138

Query: 293 N 293
           +
Sbjct: 139 H 139

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 5e-04
 Identities = 15/115 (13%), Positives = 31/115 (26%)

Query: 164 MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELY 223
                          +G++  A  + E A   D  +  A+  LG      E  +      
Sbjct: 17  RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISAL 76

Query: 224 VHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLY 278
              L+       AL  L ++  + +    + E         P+   ++       
Sbjct: 77  RRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGA 131

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 7/64 (10%), Positives = 15/64 (23%)

Query: 223 YVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG 282
           Y    +N        +  GL      +  +++  F       P   E    + +      
Sbjct: 8   YQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 67

Query: 283 DVEQ 286
               
Sbjct: 68  QELL 71

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 16/105 (15%), Positives = 36/105 (34%)

Query: 175 IYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCI 234
                G ++ A +   EA   D +N   + N       + DY K  E     +D      
Sbjct: 12  KALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG 71

Query: 235 EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE 279
           +       A + LN + ++   + +      + P++   + ++  
Sbjct: 72  KGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.7 bits (80), Expect = 0.004
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 1/61 (1%)

Query: 213 REDYVKGKELYVHAL-DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVL 271
             D   G ++      + ++   E LY L +    L EYS +      L     +  +V 
Sbjct: 51  VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 110

Query: 272 Y 272
            
Sbjct: 111 A 111

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	425
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.97
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.96
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.93
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.91
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.9
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.89
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.88
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.83
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.83
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.77
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.73
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.73
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.72
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.72
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.72
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.71
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.69
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.68
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.65
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.63
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.61
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.61
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.6
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.6
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.59
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.59
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.59
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.59
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.59
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.57
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.56
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.56
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.56
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.55
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.54
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.48
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.46
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.37
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.34
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.31
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.3
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.29
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.25
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.22
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.12
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.98
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.98
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.79
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.43
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.42
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.37
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.26
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	95.44
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	94.29
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	91.99
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	87.67
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	83.65
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	82.31
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	81.53

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.3e-28  Score=227.07  Aligned_cols=295  Identities=17%  Similarity=0.145  Sum_probs=215.3

Q ss_pred             HHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHHHHHH
Q psy1863          18 LIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEAEK   97 (425)
Q Consensus        18 l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~   97 (425)
                      |++.|..++..|+|++|++.++++++.+        |........++..|...|++.                   ++..
T Consensus         2 ll~la~~~~~~G~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~~~~~-------------------~A~~   54 (388)
T d1w3ba_           2 PMELAHREYQAGDFEAAERHCMQLWRQE--------PDNTGVLLLLSSIHFQCRRLD-------------------RSAH   54 (388)
T ss_dssp             CCTHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHH-------------------HHHH
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHH-------------------HHHH
Confidence            5678888999999999999999998876        666666677777777777655                   1222


Q ss_pred             HHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHH------------------
Q psy1863          98 CILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLK------------------  159 (425)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~------------------  159 (425)
                      .+..+.+.     .                    +...+.+..+|.++...|++++|+..+.                  
T Consensus        55 ~~~~al~~-----~--------------------p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  109 (388)
T d1w3ba_          55 FSTLAIKQ-----N--------------------PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAA  109 (388)
T ss_dssp             HHHHHHHH-----C--------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHh-----C--------------------CCCHHHHHHHHHHhhhhccccccccccccccccccccccccccccc
Confidence            22111111     0                    0012233444444444555554444443                  


Q ss_pred             --------------------------------------------------hcc---cchHHHHHHHHHHHHHcCCHHHHH
Q psy1863         160 --------------------------------------------------SCD---EMTSSAATNLSFIYFLQGEVEQAE  186 (425)
Q Consensus       160 --------------------------------------------------~~~---~~~~~~~~~lg~~~~~~g~~~~A~  186 (425)
                                                                        +.+   |..+.++..+|.++...|++++|.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  189 (388)
T d1w3ba_         110 ALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI  189 (388)
T ss_dssp             HHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHH
Confidence                                                              333   455677777788888888888888


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy1863         187 KMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS  266 (425)
Q Consensus       187 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  266 (425)
                      ..++++++.+|+++.++..+|.++...|++++|+..++++....|..+..+..+|.++...|++++|+..|+++++++|+
T Consensus       190 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  269 (388)
T d1w3ba_         190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH  269 (388)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHH
Q psy1863         267 MPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYN  339 (425)
Q Consensus       267 ~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  339 (425)
                      ++.++..+|.++...|++++|+..++. +....|.+.  +..++.+     ++++|+..|+++++..|++.         
T Consensus       270 ~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---------  339 (388)
T d1w3ba_         270 FPDAYCNLANALKEKGSVAEAEDCYNT-ALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA---------  339 (388)
T ss_dssp             CHHHHHHHHHHHHHHSCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCH---------
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHh-hhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------
Confidence            888888888888888888888888888 887777776  5555555     77788888888877777643         


Q ss_pred             HHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcc
Q psy1863         340 WCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT  390 (425)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~  390 (425)
                                      .++..+|.+|...|++++|+..|+++.++.|..+.
T Consensus       340 ----------------~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~  374 (388)
T d1w3ba_         340 ----------------AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD  374 (388)
T ss_dssp             ----------------HHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHH
T ss_pred             ----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence                            45667889999999999999999999887766554

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.4e-27  Score=216.00  Aligned_cols=282  Identities=16%  Similarity=0.066  Sum_probs=224.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARED  215 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  215 (425)
                      +.+|..+++.|++++|+..|++++   |.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|+
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~   82 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcc
Confidence            356777788888888888888877   77778888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHhcC-----------------------------------------------------------------
Q psy1863         216 YVKGKELYVHALDND-----------------------------------------------------------------  230 (425)
Q Consensus       216 ~~~A~~~~~~al~~~-----------------------------------------------------------------  230 (425)
                      +++|+..+..++...                                                                 
T Consensus        83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (388)
T d1w3ba_          83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI  162 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhh
Confidence            888887777766543                                                                 


Q ss_pred             ---cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HH
Q psy1863         231 ---ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LS  305 (425)
Q Consensus       231 ---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~  305 (425)
                         |+++.++..+|.++...|++++|...++++++.+|+++.++..+|.++...|++++|+..+++ +....|.++  +.
T Consensus       163 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~  241 (388)
T d1w3ba_         163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR-ALSLSPNHAVVHG  241 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH-HHHHCTTCHHHHH
T ss_pred             ccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHH-hHHHhhhHHHHHH
Confidence               445667788889999999999999999999999999999999999999999999999999999 999888887  66


Q ss_pred             HHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhh---------chhhhcHHHHHHHHHHHhcCCH
Q psy1863         306 QLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSA---------HSSLAQDLEINKAVTFLRMNDV  371 (425)
Q Consensus       306 ~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~la~~~~~~g~~  371 (425)
                      .+|.+     ++++|+..|+++++..|.+...+...|..+...+....+         ..+.....+..++.++...|++
T Consensus       242 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  321 (388)
T d1w3ba_         242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI  321 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCH
Confidence            67776     889999999999999999888887777544433322222         2233456778899999999999


Q ss_pred             HHHHHHHHHHHhhccCCccchhHHHHHhhhccCcCCCCcHHHHHHhHhHHhhc
Q psy1863         372 SQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLTVLQY  424 (425)
Q Consensus       372 ~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~~  424 (425)
                      ++|+..|+++.+..|.   +....+.+...........+|..++++++++-|.
T Consensus       322 ~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~  371 (388)
T d1w3ba_         322 EEAVRLYRKALEVFPE---FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT  371 (388)
T ss_dssp             HHHHHHHHHHTTSCTT---CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            9999999999666544   4444444544455556889999999999987653

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.8e-24  Score=194.44  Aligned_cols=223  Identities=13%  Similarity=0.087  Sum_probs=183.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy1863         138 EINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE  214 (425)
Q Consensus       138 ~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  214 (425)
                      .+..|..++..|++++|+..|++++   |.++.+|..+|.++...|++++|+..|.++++++|++...+..+|.++...|
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc
Confidence            3688999999999999999999998   8999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCcC---------------------------------------------------cHHHHHHHHHH
Q psy1863         215 DYVKGKELYVHALDNDAT---------------------------------------------------CIEALYNLGLA  243 (425)
Q Consensus       215 ~~~~A~~~~~~al~~~~~---------------------------------------------------~~~~~~~la~~  243 (425)
                      ++++|+..+++++...|.                                                   ++.++..+|.+
T Consensus       102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~  181 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL  181 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred             cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence            999999988887765443                                                   24567788888


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHH
Q psy1863         244 HKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAE  316 (425)
Q Consensus       244 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~  316 (425)
                      +...|++++|+..|++++..+|+++.++..+|.++..+|++++|+.+|++ +++.+|+++  +..+|.+     ++++|+
T Consensus       182 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~p~~~~a~~~lg~~~~~~g~~~~A~  260 (323)
T d1fcha_         182 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR-ALELQPGYIRSRYNLGISCINLGAHREAV  260 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHH-HHHHhhccHHHHHHHHHHHHHCCCHHHHH
Confidence            88999999999999999999999999999999999999999999999999 999998888  7778877     888999


Q ss_pred             HHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHH
Q psy1863         317 KCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAV  375 (425)
Q Consensus       317 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  375 (425)
                      ..|++++++.|.+.......+              .....+|..++.++..+|+.+.+.
T Consensus       261 ~~~~~al~l~p~~~~~~~~~~--------------~~~~~~~~~l~~al~~~~~~d~~~  305 (323)
T d1fcha_         261 EHFLEALNMQRKSRGPRGEGG--------------AMSENIWSTLRLALSMLGQSDAYG  305 (323)
T ss_dssp             HHHHHHHHHHHTC------CC--------------CCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred             HHHHHHHHhCCcChhhhhhhH--------------HHHHHHHHHHHHHHHHcCCHHHHH
Confidence            999999998888766554443              111234455666666666665443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.7e-23  Score=187.80  Aligned_cols=234  Identities=13%  Similarity=0.082  Sum_probs=192.3

Q ss_pred             HHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHHHHH
Q psy1863          17 GLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEAE   96 (425)
Q Consensus        17 ~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~   96 (425)
                      ..++.|..+...|++++|+..++++++.+        |.....+..++.++...|++.                   .+.
T Consensus        21 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------P~~~~a~~~lg~~~~~~~~~~-------------------~A~   73 (323)
T d1fcha_          21 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD--------PKHMEAWQYLGTTQAENEQEL-------------------LAI   73 (323)
T ss_dssp             SHHHHHHHHHHTTCHHHHHHHHHHHHHSC--------TTCHHHHHHHHHHHHHTTCHH-------------------HHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChH-------------------HHH
Confidence            35788999999999999999999999877        666666777777777766644                   233


Q ss_pred             HHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHH------
Q psy1863          97 KCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSS------  167 (425)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~------  167 (425)
                      .++..+..+     .                    +...+.+..+|.++...|++++|+..+++++   |....      
T Consensus        74 ~~~~~al~~-----~--------------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  128 (323)
T d1fcha_          74 SALRRCLEL-----K--------------------PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAE  128 (323)
T ss_dssp             HHHHHHHHH-----C--------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---
T ss_pred             HHHHhhhcc-----c--------------------cccccccccccccccccccccccccchhhHHHhccchHHHHHhhh
Confidence            333322211     1                    1124556889999999999999999999987   22111      


Q ss_pred             ---------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHH
Q psy1863         168 ---------AATNLSFIYFLQGEVEQAEKMAEEACTADTYN--SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEA  236 (425)
Q Consensus       168 ---------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  236 (425)
                               ........+...+.+.+|+..|.+++..+|+.  +.++..+|.++...|++++|+.+|++++..+|+++.+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  208 (323)
T d1fcha_         129 EGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL  208 (323)
T ss_dssp             ------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccc
Confidence                     11122233455678899999999999999874  6788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         237 LYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       237 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      |.++|.++...|++++|+.+|+++++.+|+++.+++.+|.+|..+|++++|+..|++ +++++|++.
T Consensus       209 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~-al~l~p~~~  274 (323)
T d1fcha_         209 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLE-ALNMQRKSR  274 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHHHTC-
T ss_pred             hhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCcCh
Confidence            999999999999999999999999999999999999999999999999999999999 999999877

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.3e-22  Score=183.23  Aligned_cols=196  Identities=10%  Similarity=0.003  Sum_probs=181.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy1863         135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQG-EVEQAEKMAEEACTADTYNSAAFVNLGNCA  210 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (425)
                      .+++..+|.++.+.+.+++|+.++++++   |.+..+|+++|.++...| ++++|+..++++++.+|++..+|.++|.++
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~  122 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV  122 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence            4555778999999999999999999999   999999999999999987 599999999999999999999999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC------H
Q psy1863         211 MAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGD------V  284 (425)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------~  284 (425)
                      ..+|++++|+..+.++++++|++..+|.++|.++...|++++|+.+|+++++++|.+..+|.++|.++...+.      +
T Consensus       123 ~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~  202 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVL  202 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred             HhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988776      6


Q ss_pred             HHHHHHHHHHHHhcCcchH--HHHHHHh----hHHHHHHHHHHHHhhcCCchh
Q psy1863         285 EQASDVNENLLLEAVRNDA--LSQLHRE----MKHEAEKCILTSAKLIAPSIE  331 (425)
Q Consensus       285 ~~A~~~~~~~a~~~~p~~~--~~~l~~~----~~~~A~~~~~~a~~~~~~~~~  331 (425)
                      ++|+..+.+ +++.+|++.  |..++.+    ...++...+..++++.|....
T Consensus       203 ~~ai~~~~~-al~~~P~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~~~~  254 (315)
T d2h6fa1         203 EREVQYTLE-MIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSS  254 (315)
T ss_dssp             HHHHHHHHH-HHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCC
T ss_pred             HHhHHHHHH-HHHhCCCchHHHHHHHHHHHhcChHHHHHHHHHHHHhCCCcCC
Confidence            899999999 999999998  7777766    567888888999888887543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=7.4e-22  Score=178.22  Aligned_cols=174  Identities=9%  Similarity=-0.021  Sum_probs=164.6

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCcCcHHHHHHHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE-DYVKGKELYVHALDNDATCIEALYNLG  241 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~la  241 (425)
                      |....++..+|.++...+.+++|+..++++++++|.+..+|+++|.++...| ++++|+..++++++.+|++..+|.++|
T Consensus        40 p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~  119 (315)
T d2h6fa1          40 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR  119 (315)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHh
Confidence            7788999999999999999999999999999999999999999999999987 499999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh---------
Q psy1863         242 LAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE---------  310 (425)
Q Consensus       242 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~---------  310 (425)
                      .++..+|++++|+..+.++++++|.+..+|.++|.++..+|++++|+.++++ +++++|.+.  |.+++.+         
T Consensus       120 ~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~-al~~~p~n~~a~~~r~~~l~~~~~~~~  198 (315)
T d2h6fa1         120 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQ-LLKEDVRNNSVWNQRYFVISNTTGYND  198 (315)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHCCccHHHHHHHHHHHHHccccch
Confidence            9999999999999999999999999999999999999999999999999999 999999988  7777765         


Q ss_pred             --hHHHHHHHHHHHHhhcCCchhhHhhch
Q psy1863         311 --MKHEAEKCILTSAKLIAPSIEDNFSNG  337 (425)
Q Consensus       311 --~~~~A~~~~~~a~~~~~~~~~~~~~~~  337 (425)
                        ..++|+..+.++++..|.+...+...|
T Consensus       199 ~~~~~~ai~~~~~al~~~P~~~~~~~~l~  227 (315)
T d2h6fa1         199 RAVLEREVQYTLEMIKLVPHNESAWNYLK  227 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             hhhhHHhHHHHHHHHHhCCCchHHHHHHH
Confidence              468999999999999999887766554

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=3.5e-21  Score=168.79  Aligned_cols=204  Identities=10%  Similarity=0.011  Sum_probs=159.4

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL  242 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  242 (425)
                      +..+.+++.+|.+|...|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|+++.++.++|.
T Consensus        34 ~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~  113 (259)
T d1xnfa_          34 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI  113 (259)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHH
Confidence            56678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH-HHHHHHh----hHHHHHH
Q psy1863         243 AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA-LSQLHRE----MKHEAEK  317 (425)
Q Consensus       243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~-~~~l~~~----~~~~A~~  317 (425)
                      ++..+|++++|+..|+++++.+|.+......++.++...+..+.+...... .....+... +..+...    ...   .
T Consensus       114 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~  189 (259)
T d1xnfa_         114 ALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQH-FEKSDKEQWGWNIVEFYLGNISEQ---T  189 (259)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHH-HHHSCCCSTHHHHHHHHTTSSCHH---H
T ss_pred             HHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHH-hhccchhhhhhhHHHHHHHHHHHH---H
Confidence            999999999999999999999999999988888888888877766666665 555544443 2111111    111   1


Q ss_pred             HHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCC
Q psy1863         318 CILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSA  388 (425)
Q Consensus       318 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  388 (425)
                      .+..+........                  ...+....++..+|.+|...|++++|+..|+++.+..|.+
T Consensus       190 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  242 (259)
T d1xnfa_         190 LMERLKADATDNT------------------SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN  242 (259)
T ss_dssp             HHHHHHHHCCSHH------------------HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHHHHhh------------------hcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence            1111111111111                  1111224567889999999999999999999997665543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=3.2e-19  Score=156.07  Aligned_cols=195  Identities=11%  Similarity=-0.036  Sum_probs=154.0

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy1863         134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCA  210 (425)
Q Consensus       134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (425)
                      .+++++.+|.+|...|++++|+..|++++   |.++.+++.+|.++...|++++|+..|+++++++|+++.++.++|.++
T Consensus        36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  115 (259)
T d1xnfa_          36 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL  115 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHH
Confidence            46677899999999999999999999999   999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH----HcCCHHH
Q psy1863         211 MAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE----ITGDVEQ  286 (425)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~----~~g~~~~  286 (425)
                      ..+|++++|+..|+++++.+|++......++.++...+..+.+...........+.....  .+...+.    ..+..+.
T Consensus       116 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  193 (259)
T d1xnfa_         116 YYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGW--NIVEFYLGNISEQTLMER  193 (259)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHH--HHHHHHTTSSCHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhh--hHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988888888888887666666666555555443321  1111111    1223444


Q ss_pred             HHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchh
Q psy1863         287 ASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIE  331 (425)
Q Consensus       287 A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~  331 (425)
                      +...+.. .....|...  +..+|.+     ++++|+.+|++++..+|.+..
T Consensus       194 ~~~~~~~-~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  244 (259)
T d1xnfa_         194 LKADATD-NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV  244 (259)
T ss_dssp             HHHHCCS-HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred             HHHHHHH-hhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH
Confidence            4444444 444455544  5666666     778888888888888777643

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=5.1e-20  Score=167.81  Aligned_cols=242  Identities=7%  Similarity=-0.111  Sum_probs=204.6

Q ss_pred             cCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy1863         148 MNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQ----------GEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE  214 (425)
Q Consensus       148 ~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  214 (425)
                      .+..++|+.++.+++   |+++.+|...+.++...          |++++|+.+++++++.+|.++.+|..+|.++...+
T Consensus        42 ~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~  121 (334)
T d1dcea1          42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP  121 (334)
T ss_dssp             TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred             ccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhc
Confidence            334589999999998   99999988777776554          44899999999999999999999999999988876


Q ss_pred             C--HHHHHHHHHHHHhcCcCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy1863         215 D--YVKGKELYVHALDNDATCIEAL-YNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVN  291 (425)
Q Consensus       215 ~--~~~A~~~~~~al~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  291 (425)
                      +  +++|+..+.+++..+|.+..++ ...|.++...|++++|+..+++++..+|.+..+|.++|.++..+|++++|...+
T Consensus       122 ~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~  201 (334)
T d1dcea1         122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG  201 (334)
T ss_dssp             SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred             cccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            5  8999999999999999988876 577899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcchH--HHHHHHh-hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHh---------hchhhhcHHHH
Q psy1863         292 ENLLLEAVRNDA--LSQLHRE-MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNS---------AHSSLAQDLEI  359 (425)
Q Consensus       292 ~~~a~~~~p~~~--~~~l~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~  359 (425)
                      ++ ++...|.+.  +..+..+ ..+++...+.+++...|.........|......+....         ...+....++.
T Consensus       202 ~~-~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~  280 (334)
T d1dcea1         202 RL-PENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII  280 (334)
T ss_dssp             SS-CHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HH-hHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHH
Confidence            99 999988877  4455555 66788999999999999888777777654443333322         22344567888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhccCCcc
Q psy1863         360 NKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT  390 (425)
Q Consensus       360 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~  390 (425)
                      .+|.+|...|++++|++.|+++.++.|..+.
T Consensus       281 ~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~  311 (334)
T d1dcea1         281 LLMRALDPLLYEKETLQYFSTLKAVDPMRAA  311 (334)
T ss_dssp             HHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCcccHH
Confidence            9999999999999999999999888765443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.8e-17  Score=136.54  Aligned_cols=129  Identities=19%  Similarity=0.182  Sum_probs=102.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHH
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVK  218 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  218 (425)
                      .+.|..+...|+|++|++.|.++.+.++.+++++|.+|..+|++++|+..|+++++++|+++.+++++|.++..+|++++
T Consensus         9 ~~~g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~   88 (192)
T d1hh8a_           9 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL   88 (192)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHH
Confidence            35688888888888888888877666778888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHhcCcCc----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy1863         219 GKELYVHALDNDATC----------------IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM  267 (425)
Q Consensus       219 A~~~~~~al~~~~~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  267 (425)
                      |+..|++++...|.+                ..+++++|.++..+|++++|++.+.+++.+.|+.
T Consensus        89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            888888888754332                4567777777777777777777777777777753

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.8e-17  Score=125.91  Aligned_cols=111  Identities=14%  Similarity=0.127  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHc
Q psy1863         168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHL  247 (425)
Q Consensus       168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  247 (425)
                      -+...|..++..|++++|+..|.++++.+|.++.++.++|.++..+|++++|+..|++++.++|+++.+|+++|.++..+
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~   84 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL   84 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHc
Confidence            35667888888999999999999999999999999999999999999999999999999999998888999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy1863         248 NEYSDSLECFHKLQAIVPSMPEVLYQIASLY  278 (425)
Q Consensus       248 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  278 (425)
                      |++++|+..|+++++.+|+++.++..++.+.
T Consensus        85 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          85 NRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            9999999999999999998888888887764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=7.9e-17  Score=129.68  Aligned_cols=125  Identities=16%  Similarity=0.163  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q psy1863         166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHK  245 (425)
Q Consensus       166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  245 (425)
                      +..+...|..++..|+|++|+..|+++++.+|+++.+|.++|.++..+|++++|+..|+++++++|+++.++.++|.++.
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            34566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--cCCHHHHHHH
Q psy1863         246 HLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI--TGDVEQASDV  290 (425)
Q Consensus       246 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~  290 (425)
                      .+|++++|+.++++++.++|+++.++..++.+...  .+.+++|+..
T Consensus        90 ~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          90 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999988887776443  3345555443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.2e-16  Score=132.69  Aligned_cols=151  Identities=13%  Similarity=0.135  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHc
Q psy1863         168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHL  247 (425)
Q Consensus       168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  247 (425)
                      .+++.|..+...|+|++|+..|.+   +.|.++.+++++|.+|..+|++++|+.+|+++++++|+++.+|+++|.++..+
T Consensus         7 ~l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~   83 (192)
T d1hh8a_           7 SLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT   83 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhh
Confidence            345679999999999999999986   46778899999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchHHHHHHHhh
Q psy1863         248 NEYSDSLECFHKLQAIVPSM----------------PEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREM  311 (425)
Q Consensus       248 g~~~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~~~~l~~~~  311 (425)
                      |++++|+..|++++...|.+                ..+++++|.++..+|++++|.+.+.+ ++.+.|+....     .
T Consensus        84 g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~-A~~~~~~~~~~-----~  157 (192)
T d1hh8a_          84 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL-ATSMKSEPRHS-----K  157 (192)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHTTCCSGGGG-----H
T ss_pred             ccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHH-HHhcCCCcchH-----H
Confidence            99999999999999875532                36789999999999999999999999 99988874311     1


Q ss_pred             HHHHHHHHHHHHhhcC
Q psy1863         312 KHEAEKCILTSAKLIA  327 (425)
Q Consensus       312 ~~~A~~~~~~a~~~~~  327 (425)
                      .+.|+..+.+.....|
T Consensus       158 ~~~Al~~~~~~~~~~~  173 (192)
T d1hh8a_         158 IDKAMECVWKQKLYEP  173 (192)
T ss_dssp             HHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHhhhhCCc
Confidence            2345555554444444

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=9.2e-17  Score=121.91  Aligned_cols=107  Identities=19%  Similarity=0.139  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy1863         202 AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT  281 (425)
Q Consensus       202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  281 (425)
                      -+...|..++..|++++|+.+|+++++.+|+++.+|.++|.+|..+|++++|+..|.+++.++|+++.+|+++|.++..+
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~   84 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL   84 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHc
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCcchH--HHHHHH
Q psy1863         282 GDVEQASDVNENLLLEAVRNDA--LSQLHR  309 (425)
Q Consensus       282 g~~~~A~~~~~~~a~~~~p~~~--~~~l~~  309 (425)
                      |++++|+..|++ +++.+|+++  +..++.
T Consensus        85 ~~~~~A~~~~~~-a~~~~p~~~~~~~~l~~  113 (117)
T d1elwa_          85 NRFEEAKRTYEE-GLKHEANNPQLKEGLQN  113 (117)
T ss_dssp             TCHHHHHHHHHH-HHTTCTTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHH-HHHhCCCCHHHHHHHHH
Confidence            999999999999 999999999  555544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=8.6e-18  Score=152.84  Aligned_cols=203  Identities=6%  Similarity=-0.138  Sum_probs=168.5

Q ss_pred             hHHHHHHHHHHHHcC--CHHHHHHHHHhcc---cchHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy1863         135 QDLEINKAVTFLRMN--DVSQAVDVLKSCD---EMTSSAA-TNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGN  208 (425)
Q Consensus       135 ~~~~~~~a~~~~~~g--~~~~A~~~~~~~~---~~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  208 (425)
                      ...+..+|.++...+  ++++|+..+.+++   |....++ ..+|.++...|.+++|+..+++++..+|.+..+|+++|.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~  186 (334)
T d1dcea1         107 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSC  186 (334)
T ss_dssp             HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            344566777766655  5889999999988   6666665 567888888999999999999999999999999999999


Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy1863         209 CAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQAS  288 (425)
Q Consensus       209 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  288 (425)
                      ++...|++++|+..+++++...|.....+..    +...+..++|...+.+++...|.....+..+|.++...|++.+|+
T Consensus       187 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~  262 (334)
T d1dcea1         187 LLPQLHPQPDSGPQGRLPENVLLKELELVQN----AFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESC  262 (334)
T ss_dssp             HHHHHSCCCCSSSCCSSCHHHHHHHHHHHHH----HHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHhHHhHHHHHHHHHH----HHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHH
Confidence            9999999999988888888887766554433    455677888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHH
Q psy1863         289 DVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCV  342 (425)
Q Consensus       289 ~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  342 (425)
                      ..+.+ ++..+|.+.  +..+|.+     ++++|+.+|+++++++|.....+..++..+..
T Consensus       263 ~~~~~-~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~  322 (334)
T d1dcea1         263 KELQE-LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL  322 (334)
T ss_dssp             HHHHH-HCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHHHH-HHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence            99999 999999888  8888887     99999999999999999877666655544443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=1.1e-16  Score=142.25  Aligned_cols=193  Identities=16%  Similarity=0.047  Sum_probs=156.5

Q ss_pred             hhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----
Q psy1863         133 LAQDLEINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN----  199 (425)
Q Consensus       133 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----  199 (425)
                      .+.+++...|.+|...|+|++|+..|.+++         +..+.++.++|.+|...|++++|+.++++++.+.+..    
T Consensus        35 ~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~  114 (290)
T d1qqea_          35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFR  114 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccch
Confidence            356778899999999999999999999998         3345789999999999999999999999999886544    


Q ss_pred             --HHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCcC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--
Q psy1863         200 --SAAFVNLGNCAMA-REDYVKGKELYVHALDNDAT------CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMP--  268 (425)
Q Consensus       200 --~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--  268 (425)
                        ..++..+|.++.. .|++++|+.+|++++.+.+.      ...++.++|.++..+|+|++|+..|++++...|..+  
T Consensus       115 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~  194 (290)
T d1qqea_         115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS  194 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred             hHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhh
Confidence              4678899998865 69999999999999987432      256789999999999999999999999999987654  


Q ss_pred             -----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH-------HHHHHHh-------hHHHHHHHHHHHHhhc
Q psy1863         269 -----EVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA-------LSQLHRE-------MKHEAEKCILTSAKLI  326 (425)
Q Consensus       269 -----~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~-------~~~l~~~-------~~~~A~~~~~~a~~~~  326 (425)
                           ..+...|.++...|++..|...+++ +.+.+|..+       +..+...       .+.+|+..|.++.+++
T Consensus       195 ~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~-~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD  270 (290)
T d1qqea_         195 QWSLKDYFLKKGLCQLAATDAVAAARTLQE-GQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD  270 (290)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHG-GGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred             hhhHHHHHHHHHHHHHHhccHHHHHHHHHH-HHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence                 4567889999999999999999999 999998655       2333222       3667777776655554

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=2.7e-15  Score=136.16  Aligned_cols=228  Identities=11%  Similarity=0.035  Sum_probs=169.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------CCHH
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADT--------YNSA  201 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~  201 (425)
                      ..+|.++...|++++|+..|++++         +....++..++.++...|++..|...+.+++...+        ....
T Consensus        55 ~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~  134 (366)
T d1hz4a_          55 SVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEF  134 (366)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHH
Confidence            566888888888888888888887         23346677888888888888888888888876532        1234


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------CHH
Q psy1863         202 AFVNLGNCAMAREDYVKGKELYVHALDNDAT-----CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS-------MPE  269 (425)
Q Consensus       202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~  269 (425)
                      .+..+|.++...|+++.|...+.+++...+.     ...++...+.++...|++.++...+.++....+.       ...
T Consensus       135 ~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~  214 (366)
T d1hz4a_         135 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN  214 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred             HHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHH
Confidence            5677888888888888888888888876543     2566778888888888888888888888776432       234


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH------HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchH
Q psy1863         270 VLYQIASLYEITGDVEQASDVNENLLLEAVRNDA------LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGY  338 (425)
Q Consensus       270 ~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~------~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~  338 (425)
                      ++..++.++...|++++|...+++ ++...|.++      +..++.+     ++++|...+++++......         
T Consensus       215 ~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---------  284 (366)
T d1hz4a_         215 ANKVRVIYWQMTGDKAAAANWLRH-TAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL---------  284 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHH-SCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHH-HHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc---------
Confidence            567778888888888888888888 887766543      4445554     7788888888776543211         


Q ss_pred             HHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q psy1863         339 NWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTS  386 (425)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  386 (425)
                                ...+....++..+|.+|...|++++|++.++++.++.+
T Consensus       285 ----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         285 ----------RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             ----------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             ----------ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence                      11222345678899999999999999999999976544

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=1.2e-15  Score=138.62  Aligned_cols=268  Identities=12%  Similarity=-0.013  Sum_probs=206.3

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cch-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------
Q psy1863         134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMT-----SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN------  199 (425)
Q Consensus       134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------  199 (425)
                      .++.....|.+++..|++++|+.++++++   |..     ..++..+|.++...|++++|+..|++++...|..      
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   90 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA   90 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence            34555678999999999999999999998   332     4578899999999999999999999999875432      


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc--------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----
Q psy1863         200 SAAFVNLGNCAMAREDYVKGKELYVHALDNDA--------TCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS-----  266 (425)
Q Consensus       200 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----  266 (425)
                      ..++..++.++...|++..|...+.+++...+        .....+..+|.++...|+++.|...+.+++...+.     
T Consensus        91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  170 (366)
T d1hz4a_          91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ  170 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhh
Confidence            35688899999999999999999999987632        22457788999999999999999999999988764     


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcch----H-----HHHHHHh-----hHHHHHHHHHHHHhhcCCchhh
Q psy1863         267 MPEVLYQIASLYEITGDVEQASDVNENLLLEAVRND----A-----LSQLHRE-----MKHEAEKCILTSAKLIAPSIED  332 (425)
Q Consensus       267 ~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~----~-----~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~  332 (425)
                      ...++...+..+...+++.++...+.+ +....+..    +     +..++.+     ++++|...+.+++...|.....
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~a~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  249 (366)
T d1hz4a_         171 QLQCLAMLIQCSLARGDLDNARSQLNR-LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF  249 (366)
T ss_dssp             GHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchH
Confidence            345778889999999999999999998 77653321    1     2333333     8888999988888776654321


Q ss_pred             HhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc---cCCccchhHHHHHhhhccCcCCCC
Q psy1863         333 NFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMT---SSAATNLSFIYFLVSSEFQYLPTS  409 (425)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~l~~~~~~~~~~~  409 (425)
                      .                     ...+..+|.++...|++++|+..++++....   ...+........+....+......
T Consensus       250 ~---------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  308 (366)
T d1hz4a_         250 L---------------------QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS  308 (366)
T ss_dssp             G---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             H---------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHH
Confidence            1                     2345668999999999999999999986433   223333334444444445555788


Q ss_pred             cHHHHHHhHhHHhh
Q psy1863         410 EVPIYLENLLTVLQ  423 (425)
Q Consensus       410 ea~~~~~~~l~~~~  423 (425)
                      +|..++++++++.+
T Consensus       309 ~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         309 DAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988754

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=8.8e-16  Score=123.40  Aligned_cols=108  Identities=15%  Similarity=0.101  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy1863         202 AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT  281 (425)
Q Consensus       202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  281 (425)
                      .+...|+.++..|+|++|+.+|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|++..++..+|.++..+
T Consensus        12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~   91 (159)
T d1a17a_          12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL   91 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence            46678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCcchH--HHHHHHh
Q psy1863         282 GDVEQASDVNENLLLEAVRNDA--LSQLHRE  310 (425)
Q Consensus       282 g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~  310 (425)
                      |++++|+.++++ ++.++|+++  +..++.+
T Consensus        92 g~~~eA~~~~~~-a~~~~p~~~~~~~~l~~~  121 (159)
T d1a17a_          92 GKFRAALRDYET-VVKVKPHDKDAKMKYQEC  121 (159)
T ss_dssp             TCHHHHHHHHHH-HHHHSTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH-HHHcCCCCHHHHHHHHHH
Confidence            999999999999 999999998  4455544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=6.8e-17  Score=135.35  Aligned_cols=103  Identities=13%  Similarity=0.190  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q psy1863         166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHK  245 (425)
Q Consensus       166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  245 (425)
                      +..+...|..++..|+|++|+..|++++.++|.++.+|.++|.+|...|++++|+.+|+++++++|+++.+|+++|.+|.
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~   83 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            34455667777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCH
Q psy1863         246 HLNEYSDSLECFHKLQAIVPSMP  268 (425)
Q Consensus       246 ~~g~~~~A~~~~~~al~~~p~~~  268 (425)
                      .+|++++|+..|++++.++|+..
T Consensus        84 ~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          84 EMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HCCCHHHHHHHHHHHHHhCcccH
Confidence            77777777777777776666443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=2e-15  Score=126.25  Aligned_cols=104  Identities=9%  Similarity=0.072  Sum_probs=100.2

Q ss_pred             CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy1863         199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLY  278 (425)
Q Consensus       199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  278 (425)
                      ++..+...|+.++..|+|++|+..|++++.++|.++.+|.++|.+|...|++++|+.+|+++++++|+++.+|+++|.+|
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            56678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         279 EITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       279 ~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      ..+|++++|+..|++ +++++|++.
T Consensus        83 ~~l~~~~~A~~~~~~-al~l~p~~~  106 (201)
T d2c2la1          83 LEMESYDEAIANLQR-AYSLAKEQR  106 (201)
T ss_dssp             HHTTCHHHHHHHHHH-HHHHHHHTT
T ss_pred             HHCCCHHHHHHHHHH-HHHhCcccH
Confidence            999999999999999 999988766

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=7.4e-15  Score=119.11  Aligned_cols=120  Identities=20%  Similarity=0.233  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Q psy1863         167 SAATNLSFIYFLQGEVEQAEKMAEEACTADTYN---------------SAAFVNLGNCAMAREDYVKGKELYVHALDNDA  231 (425)
Q Consensus       167 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  231 (425)
                      ..+...|..++..|+|++|+..|.+++...|..               ..++.++|.+|+.+|++++|+.++++++.++|
T Consensus        14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p   93 (170)
T d1p5qa1          14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS   93 (170)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc
Confidence            334455666666666666666666666554432               23466777777777888888888888887777


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy1863         232 TCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQ  286 (425)
Q Consensus       232 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  286 (425)
                      +++.+++++|.++..+|++++|+.+|+++++++|+++.+...++.+....+...+
T Consensus        94 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~  148 (170)
T d1p5qa1          94 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA  148 (170)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            7777777888888888888888888888877777777777777777665554443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=3e-14  Score=126.33  Aligned_cols=167  Identities=12%  Similarity=0.119  Sum_probs=133.9

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCC-----
Q psy1863         134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFL-QGEVEQAEKMAEEACTADTY-----  198 (425)
Q Consensus       134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~-----  198 (425)
                      ....+.++|.+|...|++++|+..|++++         .....++..+|.++.. .|++++|+.+|++++++.+.     
T Consensus        76 ~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~  155 (290)
T d1qqea_          76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA  155 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence            45566889999999999999999999988         2336778899998866 69999999999999987432     


Q ss_pred             -CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-
Q psy1863         199 -NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC-------IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPE-  269 (425)
Q Consensus       199 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-  269 (425)
                       ...++.++|.++..+|+|++|+..|++++...|..       ...+...|.++...|++..|...++++++.+|..+. 
T Consensus       156 ~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~s  235 (290)
T d1qqea_         156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             hhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccch
Confidence             24568999999999999999999999999987665       356788999999999999999999999999986544 


Q ss_pred             ----HHHHHHHHHHH--cCCHHHHHHHHHHHHHhcCcc
Q psy1863         270 ----VLYQIASLYEI--TGDVEQASDVNENLLLEAVRN  301 (425)
Q Consensus       270 ----~~~~la~~~~~--~g~~~~A~~~~~~~a~~~~p~  301 (425)
                          ....++.++..  .+.+++|+..|.+ +.+++|-
T Consensus       236 re~~~l~~l~~a~~~~d~e~~~eai~~y~~-~~~lD~~  272 (290)
T d1qqea_         236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDN-FMRLDKW  272 (290)
T ss_dssp             --HHHHHHHHHHHHTTCTTTHHHHHHHHTT-SSCCCHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HhhcCHH
Confidence                34555555554  3568999999999 8877754

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.61  E-value=4.2e-15  Score=111.55  Aligned_cols=91  Identities=15%  Similarity=0.128  Sum_probs=47.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC
Q psy1863         170 TNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNE  249 (425)
Q Consensus       170 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  249 (425)
                      +.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+.+|+++++++|+++.++.++|.+|...|+
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHH
Q psy1863         250 YSDSLECFHKL  260 (425)
Q Consensus       250 ~~~A~~~~~~a  260 (425)
                      +++|++++++.
T Consensus       100 ~~~A~~~l~~~  110 (112)
T d1hxia_         100 ANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555555544

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.60  E-value=1.1e-14  Score=115.75  Aligned_cols=113  Identities=19%  Similarity=0.210  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC
Q psy1863         169 ATNLSFIYFLQGEVEQAEKMAEEACTADTYN----------------SAAFVNLGNCAMAREDYVKGKELYVHALDNDAT  232 (425)
Q Consensus       169 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  232 (425)
                      +...|..++..|+|.+|+..|.+++...|..                ..++.++|.+|+.+|++++|+.++++++.++|+
T Consensus        20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~   99 (153)
T d2fbna1          20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN   99 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccch
Confidence            3344444555555555555555554433221                134667777777777777777777777777777


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy1863         233 CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT  281 (425)
Q Consensus       233 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  281 (425)
                      +..+|+++|.++..+|++++|+.+|+++++++|++..+...++.+..++
T Consensus       100 ~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1         100 NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            7777777777777777777777777777777777777777776665443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.1e-14  Score=116.41  Aligned_cols=118  Identities=13%  Similarity=0.139  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcc------------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy1863         137 LEINKAVTFLRMNDVSQAVDVLKSCD------------------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTY  198 (425)
Q Consensus       137 ~~~~~a~~~~~~g~~~~A~~~~~~~~------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  198 (425)
                      .+...|..++..|+|++|+..|.+++                  +....++.++|.+|..+|++++|+.++++++.++|+
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~   94 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN   94 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc
Confidence            34578999999999999999999998                  123467788999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHH
Q psy1863         199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSL  254 (425)
Q Consensus       199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~  254 (425)
                      ++.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+....+...+..
T Consensus        95 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1          95 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988776666543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=6.3e-13  Score=118.68  Aligned_cols=225  Identities=10%  Similarity=-0.029  Sum_probs=172.5

Q ss_pred             HHHHHHHHhcc---cchHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHh
Q psy1863         152 SQAVDVLKSCD---EMTSSAATNLSFIYFLQ--------------GEVEQAEKMAEEACTA-DTYNSAAFVNLGNCAMAR  213 (425)
Q Consensus       152 ~~A~~~~~~~~---~~~~~~~~~lg~~~~~~--------------g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~  213 (425)
                      +.+..+|++++   |..+..|...+......              +..++|...|+++++. .|.+...|...+......
T Consensus        33 ~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~  112 (308)
T d2onda1          33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            44556677777   77788887776654332              3457888899999874 688888888899999999


Q ss_pred             cCHHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHH
Q psy1863         214 EDYVKGKELYVHALDNDATC-IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE-ITGDVEQASDVN  291 (425)
Q Consensus       214 g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~  291 (425)
                      |++++|...|++++...|.+ ..+|..++....+.|+++.|...|.+++...|.....+...+.... ..|+.+.|...|
T Consensus       113 ~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~  192 (308)
T d2onda1         113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF  192 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            99999999999999988866 4578888888889999999999999999999988888888887654 458889999999


Q ss_pred             HHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHH
Q psy1863         292 ENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVT  364 (425)
Q Consensus       292 ~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~  364 (425)
                      ++ ++..+|+++  |..++..     +.+.|...|+++++..|.+....                     ..+|......
T Consensus       193 e~-~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~---------------------~~iw~~~~~f  250 (308)
T d2onda1         193 EL-GLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS---------------------GEIWARFLAF  250 (308)
T ss_dssp             HH-HHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC---------------------HHHHHHHHHH
T ss_pred             HH-HHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHH---------------------HHHHHHHHHH
Confidence            99 999888888  6555555     88889999999988876554311                     1234444555


Q ss_pred             HHhcCCHHHHHHHHHHHHhhccCCccchhHHHHH
Q psy1863         365 FLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFL  398 (425)
Q Consensus       365 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l  398 (425)
                      ....|+.+.+..+++++.+..+..+.......++
T Consensus       251 E~~~G~~~~~~~~~~r~~~~~~~~~~~~~~~~~~  284 (308)
T d2onda1         251 ESNIGDLASILKVEKRRFTAFREEYEGKETALLV  284 (308)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHTTTTTSSCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCccccccchHHHHH
Confidence            5677999999999999887777665544444443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.59  E-value=1.2e-14  Score=117.93  Aligned_cols=135  Identities=17%  Similarity=0.249  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHH
Q psy1863         138 EINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYV  217 (425)
Q Consensus       138 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  217 (425)
                      ....|..++..|+|.+|+..|.+++....               ...+..........+|....++.++|.++..+|+++
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~   94 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVE---------------GSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQ   94 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------HHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhh---------------hhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccc
Confidence            45667777777788877777777651000               011111122333455667778888899999999999


Q ss_pred             HHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy1863         218 KGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA  287 (425)
Q Consensus       218 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  287 (425)
                      +|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|++..+...++.+........++
T Consensus        95 ~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1          95 GAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998888888888887665554443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=6.1e-15  Score=111.93  Aligned_cols=111  Identities=14%  Similarity=0.143  Sum_probs=95.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---hcCHHHHHHHHHHHHhcCcCc--HHHHHHHHHHH
Q psy1863         170 TNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMA---REDYVKGKELYVHALDNDATC--IEALYNLGLAH  244 (425)
Q Consensus       170 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~--~~~~~~la~~~  244 (425)
                      ..++..+...+++++|.+.|++++..+|.++.+++++|.++..   .+++.+|+..|++++..+|..  ..+++++|.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            3567788888999999999999999999999999999999976   455667999999999887654  45889999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy1863         245 KHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI  280 (425)
Q Consensus       245 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  280 (425)
                      ..+|++++|+.+|+++++++|++..+...++.+...
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~  118 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA  118 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999988888776554

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.59  E-value=8.5e-15  Score=109.81  Aligned_cols=94  Identities=12%  Similarity=0.062  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy1863         202 AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT  281 (425)
Q Consensus       202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  281 (425)
                      ..+.+|.+++..|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|+++.++..+|.+|...
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q psy1863         282 GDVEQASDVNENLLL  296 (425)
Q Consensus       282 g~~~~A~~~~~~~a~  296 (425)
                      |++++|++++++ .+
T Consensus        98 g~~~~A~~~l~~-~l  111 (112)
T d1hxia_          98 HNANAALASLRA-WL  111 (112)
T ss_dssp             HHHHHHHHHHHH-HH
T ss_pred             CCHHHHHHHHHH-Hh
Confidence            999999999998 54

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.59  E-value=4.3e-14  Score=114.32  Aligned_cols=84  Identities=27%  Similarity=0.345  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy1863         201 AAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI  280 (425)
Q Consensus       201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  280 (425)
                      .++.++|.||..+|++++|+.++++++.++|+++.+++++|.++..+|++++|+.+|.+++.++|+++.+...++.+...
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  144 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK  144 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34666777777777777777777777777777777777777777777777777777777777777777777777777655


Q ss_pred             cCCH
Q psy1863         281 TGDV  284 (425)
Q Consensus       281 ~g~~  284 (425)
                      .+..
T Consensus       145 ~~~~  148 (168)
T d1kt1a1         145 AKEH  148 (168)
T ss_dssp             HHHH
T ss_pred             HHhH
Confidence            5544

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2e-14  Score=137.29  Aligned_cols=224  Identities=10%  Similarity=0.057  Sum_probs=137.4

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHHHHHHHHHHhhhhhhhchhh
Q psy1863          33 AALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIED  112 (425)
Q Consensus        33 ~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (425)
                      +|.+.+++|+.++        |.......+++.+|...|+++          ..+.+-.........  +.+    ....
T Consensus         4 eA~q~~~qA~~l~--------p~~a~a~~~la~~~~~~~~l~----------eaye~~i~~dp~~a~--~~~----~e~~   59 (497)
T d1ya0a1           4 QSAQYLRQAEVLK--------ADMTDSKLGPAEVWTSRQALQ----------DLYQKMLVTDLEYAL--DKK----VEQD   59 (497)
T ss_dssp             HHHHHHHHHHHHH--------GGGTCSSSCSSSSHHHHHHHH----------HHHHHHHHHCHHHHH--HHT----HHHH
T ss_pred             HHHHHHHHHHHcC--------CCCHHHHhhHHHHHHHHchHH----------HHHHHHHHcChhhHH--HHh----HHHH
Confidence            6889999999988        888888899999999888766          111110000000000  000    0001


Q ss_pred             hhhhhHHHHHHHHHh----cCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHH
Q psy1863         113 NFSNGYNWCVQSIRN----SAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQA  185 (425)
Q Consensus       113 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A  185 (425)
                      -|..+|...++.++.    .............++......+.|+.|+..+.++.   |....++.++|..+...|++++|
T Consensus        60 Lw~~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A  139 (497)
T d1ya0a1          60 LWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAI  139 (497)
T ss_dssp             HHHHHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC----------------------------
T ss_pred             HHHHHHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHH
Confidence            122333333333322    11111111111233555566778888888888777   77888899999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy1863         186 EKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP  265 (425)
Q Consensus       186 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  265 (425)
                      +..+.+++..+|  ..++.++|.++...|++++|+.+|++++.++|+++.+++++|.++...|++.+|+.+|.+++...|
T Consensus       140 ~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~  217 (497)
T d1ya0a1         140 VKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF  217 (497)
T ss_dssp             ---CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB
T ss_pred             HHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence            999999988776  467889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcC
Q psy1863         266 SMPEVLYQIASLYEITG  282 (425)
Q Consensus       266 ~~~~~~~~la~~~~~~g  282 (425)
                      ..+.++.+|+.++....
T Consensus       218 ~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         218 PFPAASTNLQKALSKAL  234 (497)
T ss_dssp             CCHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhh
Confidence            99999999998887643

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.57  E-value=5.5e-14  Score=113.68  Aligned_cols=127  Identities=15%  Similarity=0.183  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcc------------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy1863         136 DLEINKAVTFLRMNDVSQAVDVLKSCD------------------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADT  197 (425)
Q Consensus       136 ~~~~~~a~~~~~~g~~~~A~~~~~~~~------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  197 (425)
                      +.....|..++..|+|.+|+..|.+++                  +....++.++|.||..+|++++|+..+++++.++|
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p   95 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS   95 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence            344678999999999999999999988                  22345678899999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHH-HHHHHHHHHh
Q psy1863         198 YNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSD-SLECFHKLQA  262 (425)
Q Consensus       198 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~  262 (425)
                      .+..+++++|.++..+|++++|+..|++++.++|+++.+...++.+....+.+.+ ....|.+.++
T Consensus        96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~  161 (168)
T d1kt1a1          96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFK  161 (168)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999887776653 4444444443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.56  E-value=4.5e-14  Score=114.42  Aligned_cols=91  Identities=13%  Similarity=0.032  Sum_probs=85.5

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863         163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL  242 (425)
Q Consensus       163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  242 (425)
                      |....++.++|.++..+|++++|+..|.++++++|+++.+++++|.++..+|++++|+..|+++++++|++..+...++.
T Consensus        74 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~  153 (169)
T d1ihga1          74 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK  153 (169)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            77888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHH
Q psy1863         243 AHKHLNEYSDS  253 (425)
Q Consensus       243 ~~~~~g~~~~A  253 (425)
                      +........++
T Consensus       154 ~~~~l~~~~~~  164 (169)
T d1ihga1         154 VKQKIKAQKDK  164 (169)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88777665554

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.56  E-value=3.3e-14  Score=113.06  Aligned_cols=111  Identities=19%  Similarity=0.174  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcc-------------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy1863         138 EINKAVTFLRMNDVSQAVDVLKSCD-------------------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTY  198 (425)
Q Consensus       138 ~~~~a~~~~~~g~~~~A~~~~~~~~-------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  198 (425)
                      +...|..++..|+|.+|+..|.+++                   +....++.++|.+|+.+|++++|+.+++++++++|.
T Consensus        20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~   99 (153)
T d2fbna1          20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN   99 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccch
Confidence            3567999999999999999999988                   112357789999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC
Q psy1863         199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLN  248 (425)
Q Consensus       199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  248 (425)
                      +..+++.+|.++..+|++++|+.+|+++++++|++..+...++.+..+++
T Consensus       100 ~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1         100 NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988876553

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=6.9e-13  Score=118.40  Aligned_cols=184  Identities=9%  Similarity=-0.004  Sum_probs=162.1

Q ss_pred             HcCCHHHHHHHHHhcc----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHhcCHHHHHH
Q psy1863         147 RMNDVSQAVDVLKSCD----EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS-AAFVNLGNCAMAREDYVKGKE  221 (425)
Q Consensus       147 ~~g~~~~A~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~  221 (425)
                      ..+.+++|..+|++++    |.....|..++..+...|+++.|...|++++...|.+. .+|..++......|+++.|..
T Consensus        76 ~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~  155 (308)
T d2onda1          76 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM  155 (308)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHH
Confidence            3445688899999987    77788999999999999999999999999999999775 578999999999999999999


Q ss_pred             HHHHHHhcCcCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCc
Q psy1863         222 LYVHALDNDATCIEALYNLGLAHKH-LNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVR  300 (425)
Q Consensus       222 ~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p  300 (425)
                      +|++++...|.+...+...|..... .|+.+.|...|++++...|+++..|...+..+...|+++.|..+|++ ++...|
T Consensus       156 i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~-ai~~~~  234 (308)
T d2onda1         156 IFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER-VLTSGS  234 (308)
T ss_dssp             HHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHH-HHHSSS
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHH-HHHhCC
Confidence            9999999999999999999887554 68999999999999999999999999999999999999999999999 999876


Q ss_pred             chH------HHHHHHh-----hHHHHHHHHHHHHhhcCCchh
Q psy1863         301 NDA------LSQLHRE-----MKHEAEKCILTSAKLIAPSIE  331 (425)
Q Consensus       301 ~~~------~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~  331 (425)
                      .++      |......     +.+.+...++++.+..|....
T Consensus       235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~  276 (308)
T d2onda1         235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE  276 (308)
T ss_dssp             SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence            543      4444444     788889999999998887643

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.55  E-value=1.4e-14  Score=113.95  Aligned_cols=106  Identities=14%  Similarity=0.105  Sum_probs=84.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh----------cCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q psy1863         175 IYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAR----------EDYVKGKELYVHALDNDATCIEALYNLGLAH  244 (425)
Q Consensus       175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~la~~~  244 (425)
                      .+.+.+.|++|+..|+++++++|+++.+++++|.++...          +.+++|+..|+++++++|+++.+++++|.+|
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY   85 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence            355667789999999999999999999999999888754          4457888888888888888888888888888


Q ss_pred             HHcCC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy1863         245 KHLNE-----------YSDSLECFHKLQAIVPSMPEVLYQIASLYEI  280 (425)
Q Consensus       245 ~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  280 (425)
                      ..+|+           +++|+.+|++++.++|++..++..|+.+...
T Consensus        86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka  132 (145)
T d1zu2a1          86 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA  132 (145)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred             HHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHH
Confidence            77653           5778888888888888887777777776533

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=8e-14  Score=107.15  Aligned_cols=107  Identities=21%  Similarity=0.237  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcH-------HHHH
Q psy1863         166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCI-------EALY  238 (425)
Q Consensus       166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~  238 (425)
                      +..+..+|..++..|+|++|+.+|.++++++|+++.++.++|.+|..+|+|++|+..|++++.++|.++       .++.
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            345667888888888888888888888888888888888888888888888888888888888776553       3566


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy1863         239 NLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQ  273 (425)
Q Consensus       239 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  273 (425)
                      .+|.++..++++++|+.+|++++..+|+ +.....
T Consensus        84 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~  117 (128)
T d1elra_          84 RIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKK  117 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHH
Confidence            6677777777777777777777776653 444333

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5e-14  Score=108.30  Aligned_cols=102  Identities=18%  Similarity=0.139  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------HHHHH
Q psy1863         201 AAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMP-------EVLYQ  273 (425)
Q Consensus       201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~  273 (425)
                      ..+.++|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..|++++.++|.++       .++..
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999988664       46777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         274 IASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       274 la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      +|.++..++++++|+.+|.+ ++..+|+..
T Consensus        85 lg~~~~~~~~~~~A~~~~~k-al~~~~~~~  113 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNK-SLAEHRTPD  113 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHH-HHHHCCCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHH-HHhcCCCHH
Confidence            88888999999999999999 998887655

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.7e-13  Score=103.75  Aligned_cols=99  Identities=10%  Similarity=0.065  Sum_probs=90.5

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCC--HHHHHHHHHHH
Q psy1863         204 VNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLN---EYSDSLECFHKLQAIVPSM--PEVLYQIASLY  278 (425)
Q Consensus       204 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~--~~~~~~la~~~  278 (425)
                      -++++.+...+++++|.+.|++++..+|.++.+++++|.++.+.+   ++++|+..|++++..+|..  ..+++++|.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            467788899999999999999999999999999999999998754   5567999999999988755  45899999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         279 EITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       279 ~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      ..+|++++|+.+|++ +++++|++.
T Consensus        83 ~~~g~~~~A~~~~~~-aL~~~P~~~  106 (122)
T d1nzna_          83 YRLKEYEKALKYVRG-LLQTEPQNN  106 (122)
T ss_dssp             HHTTCHHHHHHHHHH-HHHHCTTCH
T ss_pred             HHHhhhHHHHHHHHH-HHHhCcCCH
Confidence            999999999999999 999999998

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.46  E-value=3.2e-13  Score=105.97  Aligned_cols=101  Identities=12%  Similarity=0.095  Sum_probs=88.3

Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy1863         209 CAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHL----------NEYSDSLECFHKLQAIVPSMPEVLYQIASLY  278 (425)
Q Consensus       209 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  278 (425)
                      .+.+++.|++|+..|+++++++|+++.+++++|.++...          +.+++|+..|+++++++|+++.+++++|.+|
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY   85 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence            456788899999999999999999999999999999854          5568999999999999999999999999999


Q ss_pred             HHcCC-----------HHHHHHHHHHHHHhcCcchH--HHHHHHh
Q psy1863         279 EITGD-----------VEQASDVNENLLLEAVRNDA--LSQLHRE  310 (425)
Q Consensus       279 ~~~g~-----------~~~A~~~~~~~a~~~~p~~~--~~~l~~~  310 (425)
                      ..+|+           +++|+.+|++ +++++|++.  +..|+..
T Consensus        86 ~~~g~~~~~~~~~~~~~~~A~~~~~k-al~l~P~~~~~~~~L~~~  129 (145)
T d1zu2a1          86 TSFAFLTPDETEAKHNFDLATQFFQQ-AVDEQPDNTHYLKSLEMT  129 (145)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHH-HHHHCTTCHHHHHHHHHH
T ss_pred             HHcccchhhHHHHHHhHHHhhhhhhc-ccccCCCHHHHHHHHHHH
Confidence            88754           6888889999 999999888  4555543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.37  E-value=2.2e-10  Score=99.35  Aligned_cols=216  Identities=17%  Similarity=0.148  Sum_probs=169.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcc-cchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy1863         136 DLEINKAVTFLRMNDVSQAVDVLKSCD-EMTSSAATNLSFIYFL----QGEVEQAEKMAEEACTADTYNSAAFVNLGNCA  210 (425)
Q Consensus       136 ~~~~~~a~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (425)
                      +.++.+|..+...+++++|+++|+++. ..++.+++.||.+|..    ..++..|..++..+...  .++.+...+|.++
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l~~~~   80 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLLGNLY   80 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhcccccc
Confidence            456889999999999999999999998 7888999999999997    77999999999998754  4778888888887


Q ss_pred             HH----hcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--
Q psy1863         211 MA----REDYVKGKELYVHALDNDATCIEALYNLGLAHKH----LNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI--  280 (425)
Q Consensus       211 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--  280 (425)
                      ..    .++.+.|...++++....+  ..+...+|..+..    ......|...+.+...  +.+..++..+|.++..  
T Consensus        81 ~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~~~~~  156 (265)
T d1ouva_          81 YSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLYDAGR  156 (265)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTS
T ss_pred             ccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhhhccCC
Confidence            65    4678999999999987654  5566677777765    4567777787777654  4678899999999987  


Q ss_pred             --cCCHHHHHHHHHHHHHhcCcchHHHHHHHh---------hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhh
Q psy1863         281 --TGDVEQASDVNENLLLEAVRNDALSQLHRE---------MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSA  349 (425)
Q Consensus       281 --~g~~~~A~~~~~~~a~~~~p~~~~~~l~~~---------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (425)
                        ..+...+..+++. +.+........++|.+         ++++|+.+|+++.+...                      
T Consensus       157 ~~~~~~~~~~~~~~~-a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~----------------------  213 (265)
T d1ouva_         157 GTPKDLKKALASYDK-ACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN----------------------  213 (265)
T ss_dssp             SSCCCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC----------------------
T ss_pred             Ccccccccchhhhhc-cccccccccccchhhhcccCcccccchhhhhhhHhhhhcccC----------------------
Confidence              4677888888888 7765433336667665         78889999988876532                      


Q ss_pred             chhhhcHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhc
Q psy1863         350 HSSLAQDLEINKAVTFLR----MNDVSQAVDVLKSCDEMT  385 (425)
Q Consensus       350 ~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~  385 (425)
                           +...+++|.+|..    ..++++|+++|+++....
T Consensus       214 -----~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         214 -----GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             -----HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             -----HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence                 2345667888875    448999999999996543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.4e-12  Score=124.32  Aligned_cols=157  Identities=14%  Similarity=0.022  Sum_probs=106.3

Q ss_pred             HHHHHHHHHhcc-----cch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q psy1863         151 VSQAVDVLKSCD-----EMT-SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYV  224 (425)
Q Consensus       151 ~~~A~~~~~~~~-----~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  224 (425)
                      |..+++.+++..     +.. ......++.++...+.|+.|+..+.+++..+|.+...+.++|.++...|++++|+..+.
T Consensus        65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~  144 (497)
T d1ya0a1          65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQS  144 (497)
T ss_dssp             THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CC
T ss_pred             HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHH
Confidence            445666666655     222 22233456777778899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH-
Q psy1863         225 HALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA-  303 (425)
Q Consensus       225 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~-  303 (425)
                      +++..+|  ..++.++|.++...|++++|+.+|++++.++|+++.+++++|.++...|++.+|+.+|.+ ++...|.++ 
T Consensus       145 ~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~r-al~~~~~~~~  221 (497)
T d1ya0a1         145 SSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCR-SIAVKFPFPA  221 (497)
T ss_dssp             HHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHH-HHSSSBCCHH
T ss_pred             HHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHH-HHhCCCCCHH
Confidence            9998765  468889999999999999999999999999999999999999999999999999999999 999999888 


Q ss_pred             -HHHHHHh
Q psy1863         304 -LSQLHRE  310 (425)
Q Consensus       304 -~~~l~~~  310 (425)
                       +.+|+.+
T Consensus       222 a~~nL~~~  229 (497)
T d1ya0a1         222 ASTNLQKA  229 (497)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence             7777765

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=6.9e-12  Score=90.39  Aligned_cols=76  Identities=17%  Similarity=0.080  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHH
Q psy1863         167 SAATNLSFIYFLQGEVEQAEKMAEEACTADTYN-------SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYN  239 (425)
Q Consensus       167 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  239 (425)
                      +.++.+|.+++..|+|++|+..|++|+++.|.+       ..++.++|.++.+.|++++|+.+|+++++++|+++.++.+
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N   85 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence            334445555555555555555555554443221       2334444444444444444444444444444444444444


Q ss_pred             HHH
Q psy1863         240 LGL  242 (425)
Q Consensus       240 la~  242 (425)
                      ++.
T Consensus        86 l~~   88 (95)
T d1tjca_          86 LKY   88 (95)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.1e-11  Score=89.37  Aligned_cols=83  Identities=18%  Similarity=0.149  Sum_probs=73.7

Q ss_pred             CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy1863         199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDAT-------CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVL  271 (425)
Q Consensus       199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  271 (425)
                      +++.++.+|.+++..|+|++|+..|++++++.|.       .+.++.++|.++.+.|++++|+.+|+++++++|+++.++
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            4566889999999999999999999999988543       378899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHc
Q psy1863         272 YQIASLYEIT  281 (425)
Q Consensus       272 ~~la~~~~~~  281 (425)
                      .+++.+...+
T Consensus        84 ~Nl~~~~~~l   93 (95)
T d1tjca_          84 GNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9998775543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.29  E-value=7.1e-12  Score=99.64  Aligned_cols=99  Identities=17%  Similarity=0.172  Sum_probs=64.1

Q ss_pred             HHHHHH--HHHHHHcCCHHHHHHHHHHHHhcCCCC------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC
Q psy1863         167 SAATNL--SFIYFLQGEVEQAEKMAEEACTADTYN------------SAAFVNLGNCAMAREDYVKGKELYVHALDNDAT  232 (425)
Q Consensus       167 ~~~~~l--g~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  232 (425)
                      .++..+  |..++..|+|++|+..|++++++.|..            ..++.++|.+|..+|++++|+..+++++.+.|.
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            344444  666777777777777777777766543            245667777777777777777777777665321


Q ss_pred             -----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy1863         233 -----------CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP  265 (425)
Q Consensus       233 -----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  265 (425)
                                 ...+++++|.+|..+|++++|+..|++++++.|
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~  131 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  131 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence                       133566667777777777777777777766644

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.25  E-value=7.1e-12  Score=99.64  Aligned_cols=98  Identities=13%  Similarity=0.093  Sum_probs=85.1

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCcCc------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------
Q psy1863         205 NLGNCAMAREDYVKGKELYVHALDNDATC------------IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS------  266 (425)
Q Consensus       205 ~la~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------  266 (425)
                      ..|..++..|+|++|+..|++++++.|+.            ..++.++|.+|..+|++++|+..+++++.+.|.      
T Consensus        14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~   93 (156)
T d2hr2a1          14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ   93 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccc
Confidence            34888899999999999999999987653            467899999999999999999999999987542      


Q ss_pred             -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         267 -----MPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       267 -----~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                           ...+++++|.+|..+|++++|+..|++ ++++.|+..
T Consensus        94 ~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~-Al~l~~~~~  134 (156)
T d2hr2a1          94 DEGKLWISAVYSRALALDGLGRGAEAMPEFKK-VVEMIEERK  134 (156)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHCC
T ss_pred             cccchhHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHhhHHhh
Confidence                 234789999999999999999999999 999876544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.22  E-value=1.3e-08  Score=87.86  Aligned_cols=221  Identities=14%  Similarity=0.123  Sum_probs=155.6

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCcCcHHHHHHH
Q psy1863         165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMA----REDYVKGKELYVHALDNDATCIEALYNL  240 (425)
Q Consensus       165 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l  240 (425)
                      +|.+++.+|..++..||+++|+++|+++.+.  ++..++++||.+|..    ..++..|..+++.+...  .++.+...+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhcc
Confidence            4789999999999999999999999999765  588999999999987    67899999999998865  467788888


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCcchHHHHHHHh--
Q psy1863         241 GLAHKH----LNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI----TGDVEQASDVNENLLLEAVRNDALSQLHRE--  310 (425)
Q Consensus       241 a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~a~~~~p~~~~~~l~~~--  310 (425)
                      |.++..    .++.+.|...++.+....  ...+...++..+..    ......|...+.+ .........+..++..  
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g--~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~L~~~~~  153 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTK-ACDLNDGDGCTILGSLYD  153 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHH-HHHTTCHHHHHHHHHHHH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhh--hhhHHHhhcccccCCCcccchhHHHHHHhhh-hhcccccchhhhhhhhhc
Confidence            888875    468899999999988764  46677777777765    4567778888877 6654444335555544  


Q ss_pred             -------hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHh----cCCHHHHHHHHH
Q psy1863         311 -------MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLR----MNDVSQAVDVLK  379 (425)
Q Consensus       311 -------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~  379 (425)
                             +...+..+++.+.+.                           -......++|.+|..    ..++++|+.+|+
T Consensus       154 ~~~~~~~~~~~~~~~~~~a~~~---------------------------g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~  206 (265)
T d1ouva_         154 AGRGTPKDLKKALASYDKACDL---------------------------KDSPGCFNAGNMYHHGEGATKNFKEALARYS  206 (265)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHHT---------------------------TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred             cCCCcccccccchhhhhccccc---------------------------cccccccchhhhcccCcccccchhhhhhhHh
Confidence                   333333333333321                           124556677878776    678999999999


Q ss_pred             HHHhhcc-CCccchhHHHHHhhhccCcCCCCcHHHHHHhHhHH
Q psy1863         380 SCDEMTS-SAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLTV  421 (425)
Q Consensus       380 ~~~~~~~-~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~~  421 (425)
                      ++..... ..-.++..+|.- +.-. .....+|..|++++.+.
T Consensus       207 ~aa~~g~~~a~~~LG~~y~~-G~g~-~~n~~~A~~~~~kAa~~  247 (265)
T d1ouva_         207 KACELENGGGCFNLGAMQYN-GEGV-TRNEKQAIENFKKGCKL  247 (265)
T ss_dssp             HHHHTTCHHHHHHHHHHHHT-TSSS-SCCSTTHHHHHHHHHHH
T ss_pred             hhhcccCHHHHHHHHHHHHc-CCCC-ccCHHHHHHHHHHHHHC
Confidence            9865421 111223333331 1111 22577899999887653

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.12  E-value=4.8e-11  Score=102.85  Aligned_cols=129  Identities=13%  Similarity=0.047  Sum_probs=106.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHH
Q psy1863         174 FIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDS  253 (425)
Q Consensus       174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A  253 (425)
                      .-.+..|++++|+..++++++.+|.+..++..+|.++...|++++|+..|+++++++|++..++..++.++...+..+++
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999888877776666


Q ss_pred             HHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863         254 LECFHKLQA-IVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA  303 (425)
Q Consensus       254 ~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~  303 (425)
                      ...+..... ..|.....+...+.++...|++++|...+.+ +.+..|..+
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~-a~e~~p~~~  133 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQ-IEELRQEKG  133 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCCCCC
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHH-HHhcCCCCC
Confidence            554433222 2344456677778888899999999999999 888887765

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.98  E-value=1.8e-09  Score=87.13  Aligned_cols=119  Identities=13%  Similarity=-0.062  Sum_probs=94.5

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q psy1863         165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAH  244 (425)
Q Consensus       165 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~  244 (425)
                      ....+...|......|++++|+..|.+++.+.++........       +.     -.......+.+....++.+++.++
T Consensus        10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~-------~~-----w~~~~r~~l~~~~~~a~~~la~~~   77 (179)
T d2ff4a2          10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-------FQ-----FVEPFATALVEDKVLAHTAKAEAE   77 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-------ST-----THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcc-------hH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346778889999999999999999999999887664322111       11     112223334455678889999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy1863         245 KHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLL  296 (425)
Q Consensus       245 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~  296 (425)
                      ...|++++|+.++++++..+|.+..+|..++.++...|++.+|+..|++ +.
T Consensus        78 ~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~-~~  128 (179)
T d2ff4a2          78 IACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRR-VK  128 (179)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHH-HH
T ss_pred             HHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHH-HH
Confidence            9999999999999999999999999999999999999999999999999 64

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.98  E-value=4.6e-10  Score=96.60  Aligned_cols=130  Identities=10%  Similarity=-0.014  Sum_probs=112.5

Q ss_pred             HHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHH
Q psy1863         142 AVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVK  218 (425)
Q Consensus       142 a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  218 (425)
                      +...+..|++++|+..+++++   |.++.++..+|.++...|++++|+..++++++++|++..++..++.++...+..++
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            456778999999999999999   99999999999999999999999999999999999999999999999888877777


Q ss_pred             HHHHHHHHHh-cCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy1863         219 GKELYVHALD-NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVL  271 (425)
Q Consensus       219 A~~~~~~al~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  271 (425)
                      +...+..... ..|.....+...+.++...|++++|...+.++.+..|..+..+
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~  136 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA  136 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence            6555444332 2456677788889999999999999999999999999765443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.79  E-value=4e-08  Score=78.99  Aligned_cols=113  Identities=12%  Similarity=-0.084  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy1863         137 LEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAR  213 (425)
Q Consensus       137 ~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  213 (425)
                      .....|......|++++|+..|.+++   +........       .+.     -.......+.+....++..++.++...
T Consensus        13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~-------~~~-----w~~~~r~~l~~~~~~a~~~la~~~~~~   80 (179)
T d2ff4a2          13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-------DFQ-----FVEPFATALVEDKVLAHTAKAEAEIAC   80 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-------TST-----THHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCc-------chH-----HHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            34678999999999999999999998   222111000       011     111122223344556788888888888


Q ss_pred             cCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863         214 EDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQ  261 (425)
Q Consensus       214 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  261 (425)
                      |++++|+.++++++..+|.+..+|..++.++...|++.+|+..|+++.
T Consensus        81 g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          81 GRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888888888873

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.43  E-value=1.1e-06  Score=64.20  Aligned_cols=76  Identities=17%  Similarity=0.105  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHh---cCHHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy1863         200 SAAFVNLGNCAMAR---EDYVKGKELYVHALDNDATC-IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIA  275 (425)
Q Consensus       200 ~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  275 (425)
                      ..+.++.|.++.+.   .+.++|+.+++.+++.+|.+ .+.++++|..|.++|+|++|..+++++++++|++..+....-
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            45556666665543   33456666666666666644 356666666666666666666666666666666666544433

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.42  E-value=3.2e-06  Score=63.99  Aligned_cols=111  Identities=11%  Similarity=0.027  Sum_probs=75.6

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH----cCCHHHHHHH
Q psy1863         181 EVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKH----LNEYSDSLEC  256 (425)
Q Consensus       181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~  256 (425)
                      |+++|+.+|+++.+..  ++.+.+.++.  ....++++|+.+++++.+.  .++.+.+.+|.+|..    ..++++|+.+
T Consensus         8 d~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~   81 (133)
T d1klxa_           8 DLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY   81 (133)
T ss_dssp             HHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHH
Confidence            5677777777776654  3444555543  3445677777777777664  467777777777765    4567788888


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCc
Q psy1863         257 FHKLQAIVPSMPEVLYQIASLYEI----TGDVEQASDVNENLLLEAVR  300 (425)
Q Consensus       257 ~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~a~~~~p  300 (425)
                      |+++.+.  .++.+.+.||.+|..    ..+.++|+.+|++ +.+...
T Consensus        82 ~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~-Aa~~G~  126 (133)
T d1klxa_          82 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK-ACRLGS  126 (133)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH-HHHTTC
T ss_pred             Hhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHH-HHHCCC
Confidence            8877664  467777778877776    4577788888887 766543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.37  E-value=3.7e-06  Score=63.62  Aligned_cols=109  Identities=15%  Similarity=0.118  Sum_probs=87.3

Q ss_pred             CHHHHHHHHHhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHH
Q psy1863         150 DVSQAVDVLKSCD-EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMA----REDYVKGKELYV  224 (425)
Q Consensus       150 ~~~~A~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~  224 (425)
                      |+++|+.+|+++. ..++.+.+.+|.  ....++++|+.+++++.+.  +++.+.+.+|.+|..    ..++++|+.+|+
T Consensus         8 d~~~A~~~~~kaa~~g~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~   83 (133)
T d1klxa_           8 DLKKAIQYYVKACELNEMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYS   83 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCChhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHh
Confidence            6778888888877 555666777764  3457889999999998764  678889999998876    567899999999


Q ss_pred             HHHhcCcCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Q psy1863         225 HALDNDATCIEALYNLGLAHKH----LNEYSDSLECFHKLQAIV  264 (425)
Q Consensus       225 ~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~  264 (425)
                      ++.+.  .++.+.+++|.+|..    ..++++|+.+|+++.+..
T Consensus        84 ~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          84 KACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             hhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            99876  468888999999887    468999999999987765

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.26  E-value=6e-06  Score=60.17  Aligned_cols=56  Identities=7%  Similarity=0.018  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHH
Q psy1863         183 EQAEKMAEEACTADTYNS-AAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALY  238 (425)
Q Consensus       183 ~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  238 (425)
                      ++|+..++.+++.+|.+. ++++.+|..|.++|+|++|..+++++++++|++..+..
T Consensus        55 ~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~  111 (124)
T d2pqrb1          55 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  111 (124)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence            445555555555554443 45555555555555555555555555555555554443

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.44  E-value=0.43  Score=40.75  Aligned_cols=139  Identities=9%  Similarity=0.016  Sum_probs=86.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHH
Q psy1863         140 NKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKG  219 (425)
Q Consensus       140 ~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  219 (425)
                      ..|..+.+.|.|+.|..+|... .+    +..+..++...++++.|...+.++     +++.+|..+...+.......-|
T Consensus        19 ~i~~~c~~~~lye~A~~lY~~~-~d----~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la   88 (336)
T d1b89a_          19 QVGDRCYDEKMYDAAKLLYNNV-SN----FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLA   88 (336)
T ss_dssp             ----------CTTTHHHHHHHT-TC----HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHhC-CC----HHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHHH
Confidence            4577888889999998888876 33    334557778888888888887765     4677888888777777666544


Q ss_pred             HHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863         220 KELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNEN  293 (425)
Q Consensus       220 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  293 (425)
                      .-+ ...+.   .++.-.......|...|.+++.+.+++.++...+.+...+..++.+|.+.+ .++-.++++.
T Consensus        89 ~i~-~~~~~---~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~  157 (336)
T d1b89a_          89 QMC-GLHIV---VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLEL  157 (336)
T ss_dssp             HHT-TTTTT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred             HHH-HHHhh---cCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHh
Confidence            221 11111   234444556677778888888888888888777777888888888776643 3444444433

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=94.29  E-value=0.84  Score=40.66  Aligned_cols=182  Identities=11%  Similarity=-0.033  Sum_probs=96.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcc---cchH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863         139 INKAVTFLRMNDVSQAVDVLKSCD---EMTS----SAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM  211 (425)
Q Consensus       139 ~~~a~~~~~~g~~~~A~~~~~~~~---~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  211 (425)
                      ...+..-....+.+.|...+....   +...    .....++......+..+.+...+........+...... ++....
T Consensus       218 ~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w-~~~~al  296 (450)
T d1qsaa1         218 AAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIER-RVRMAL  296 (450)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHH-HHHHHH
T ss_pred             HHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHH-HHHHHH
Confidence            344545555566777777666654   1111    12222233333445566666666655544433332222 222344


Q ss_pred             HhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------------------------C
Q psy1863         212 AREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP-------------------------S  266 (425)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------------------------~  266 (425)
                      ..+++..+...+...-......+...+-+|..+...|+.++|...|..+....+                         .
T Consensus       297 ~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~  376 (450)
T d1qsaa1         297 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVD  376 (450)
T ss_dssp             HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCC
T ss_pred             HcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHH
Confidence            556777766666554322223356666777777777777777777776554210                         0


Q ss_pred             C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchHHHHHHHh-----hHHHHHHHHHHH
Q psy1863         267 M---PEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHRE-----MKHEAEKCILTS  322 (425)
Q Consensus       267 ~---~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~~~~l~~~-----~~~~A~~~~~~a  322 (425)
                      .   ...-...+..+...|....|...+.. ++...+......++.+     .++.|+....++
T Consensus       377 ~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~-l~~~~~~~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         377 SALTQGPEMARVRELMYWNLDNTARSEWAN-LVKSKSKTEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             CHHHHSHHHHHHHHHHHTTCHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HhhhcChHHHHHHHHHHcCCchHHHHHHHH-HHhCCCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence            0   01123456667777888888887777 6544332233333333     666666655544

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.99  E-value=3.1  Score=35.14  Aligned_cols=146  Identities=13%  Similarity=0.092  Sum_probs=92.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHH
Q psy1863         141 KAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGK  220 (425)
Q Consensus       141 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  220 (425)
                      +..++.+.+++..|.+.+.+.  ..+.+|..+...........-|... ..   .....+.-...+...|...|.+++.+
T Consensus        46 l~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~~~~e~~la~i~-~~---~~~~~~d~l~~~v~~ye~~~~~e~Li  119 (336)
T d1b89a_          46 LASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMC-GL---HIVVHADELEELINYYQDRGYFEELI  119 (336)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHT-TT---TTTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHHhCcHHHHHHHH-HH---HhhcCHHHHHHHHHHHHHcCChHHHH
Confidence            345667778888888777765  5667777777777776666543221 11   11234444556677778888888888


Q ss_pred             HHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy1863         221 ELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKL-QAIVPS-------MPEVLYQIASLYEITGDVEQASDVNE  292 (425)
Q Consensus       221 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~  292 (425)
                      .+++.++...+.+...+..++.+|.+.+ .++-++.++.. ...++.       ....|-.+..+|.+.|++++|+...-
T Consensus       120 ~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i  198 (336)
T d1b89a_         120 TMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM  198 (336)
T ss_dssp             HHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHH
Confidence            8888888877777888888888776653 34444444432 111111       11124556777788888888876654


Q ss_pred             H
Q psy1863         293 N  293 (425)
Q Consensus       293 ~  293 (425)
                      .
T Consensus       199 ~  199 (336)
T d1b89a_         199 N  199 (336)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.67  E-value=0.33  Score=32.60  Aligned_cols=33  Identities=6%  Similarity=0.067  Sum_probs=29.7

Q ss_pred             HHHHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863          13 QEIIGLIDESCICARNQDFKAALEKAKLASNKE   45 (425)
Q Consensus        13 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~   45 (425)
                      .+..+|+.+|+.+-..|+|++|+.+|.+|+..-
T Consensus        13 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l   45 (93)
T d1wfda_          13 TAAVAVLKRAVELDAESRYQQALVCYQEGIDML   45 (93)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            356789999999999999999999999998755

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=83.65  E-value=13  Score=32.32  Aligned_cols=162  Identities=11%  Similarity=0.062  Sum_probs=91.9

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---------------------------cchH--HHHHHHHHHHHHcCCHHH
Q psy1863         134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---------------------------EMTS--SAATNLSFIYFLQGEVEQ  184 (425)
Q Consensus       134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---------------------------~~~~--~~~~~lg~~~~~~g~~~~  184 (425)
                      ..+.........+..|++..|...+..+-                           +..+  ......+.......+.+.
T Consensus       153 t~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~l~rla~~d~~~  232 (450)
T d1qsaa1         153 DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAEN  232 (450)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             CHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChhhhHHHHHHHHHHhccChhH
Confidence            34444566777778888887777765532                           1111  112233333344456777


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHH----HHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863         185 AEKMAEEACTADTYNSAAFVNLGN----CAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKL  260 (425)
Q Consensus       185 A~~~~~~al~~~p~~~~~~~~la~----~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  260 (425)
                      |...+.......+.+...+.....    .....+..+.|...+........+.......++. ....+++..+...+...
T Consensus       233 a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~-al~~~~~~~~~~~~~~l  311 (450)
T d1qsaa1         233 ARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRM-ALGTGDRRGLNTWLARL  311 (450)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHH-HHHHTCHHHHHHHHHHS
T ss_pred             HHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHH-HHHcCChHHHHHHHHhc
Confidence            777776666555555443332222    2233455666766666666554444433333443 44557777777766544


Q ss_pred             HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy1863         261 QAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLE  297 (425)
Q Consensus       261 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~  297 (425)
                      -......+...+-+|..+...|+.+.|...|.. +..
T Consensus       312 ~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~-~a~  347 (450)
T d1qsaa1         312 PMEAKEKDEWRYWQADLLLERGREAEAKEILHQ-LMQ  347 (450)
T ss_dssp             CTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHH-HHT
T ss_pred             CcccccHHHHHHHHHHHHHHcCChhhHHHHHHH-Hhc
Confidence            222223456677788888888888888888887 654

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=82.31  E-value=6.3  Score=27.66  Aligned_cols=53  Identities=17%  Similarity=0.279  Sum_probs=29.2

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q psy1863         177 FLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN  229 (425)
Q Consensus       177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  229 (425)
                      ..+|+-++-.+.+...++...-++..+..+|.+|.+.|...+|-+.+.+|.+.
T Consensus        97 v~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~  149 (161)
T d1wy6a1          97 VIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK  149 (161)
T ss_dssp             HHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence            34455555555555555555555666666666666666666666666655543

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.53  E-value=0.36  Score=31.04  Aligned_cols=33  Identities=18%  Similarity=0.183  Sum_probs=29.9

Q ss_pred             HHHHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863          13 QEIIGLIDESCICARNQDFKAALEKAKLASNKE   45 (425)
Q Consensus        13 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~   45 (425)
                      ++..+++.+|+.+-..|+|++|+..|.+|+..-
T Consensus         9 ~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l   41 (77)
T d1wr0a1           9 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYF   41 (77)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            567889999999999999999999999998754