Psyllid ID: psy1880

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-
Protein Sequence
MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSMGPFSILLFKIQDEAL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccEEEEEEccccEEEEEEEccEEEEEEccEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHEccHHHHHHHHHHHHHHHHcccEEEEEEcEEEEEEEEEcccEEEEEEccEEEEEEEcccccc
Coil and Loop (DISEMBL)
MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFnrqfkpnwhcvvghcygacvsfqkgsfmylsmgpfsiLLFKIQDEAL
Flexible Loop (DISEMBL)
MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSMGPFSILLFKIQDEAL
Low Complexity Region (SEG)
MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSMGPFSILLFKIQDEAL
Disordered region (IsUnstruct)
*******FTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSMGPFSILLFKI*****
Disordered Region (DISOPRED)
MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSMGPFSILLFKIQD***
Disordered Region (DISEMBL)
MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSMGPFSILLFKIQDEAL
Disordered Region (DISPRO)
***PMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSMGPFSILLFKIQD***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSMGPFSILLFKIQDEAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	81	2.2.26 [Sep-21-2011]
P63170	89	Dynein light chain 1, cyt	yes	N/A	0.925	0.842	0.373	2e-11
P63169	89	Dynein light chain 1, cyt	yes	N/A	0.925	0.842	0.373	2e-11
P63168	89	Dynein light chain 1, cyt	yes	N/A	0.925	0.842	0.373	2e-11
P61273	89	Dynein light chain 1, cyt	N/A	N/A	0.925	0.842	0.373	2e-11
P63167	89	Dynein light chain 1, cyt	yes	N/A	0.925	0.842	0.373	2e-11
P61285	89	Dynein light chain 1, cyt	yes	N/A	0.925	0.842	0.373	2e-11
Q22799	89	Dynein light chain 1, cyt	yes	N/A	0.925	0.842	0.373	1e-10
Q39580	91	Dynein 8 kDa light chain,	N/A	N/A	0.925	0.824	0.373	1e-10
Q24117	89	Dynein light chain 1, cyt	yes	N/A	0.925	0.842	0.36	2e-10
Q78P75	89	Dynein light chain 2, cyt	no	N/A	0.925	0.842	0.346	3e-10

>sp|P63170|DYL1_RAT Dynein light chain 1, cytoplasmic OS=Rattus norvegicus GN=Dynll1 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 47/75 (62%)

Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          M++ MQ  ++  A + L K N  K I+ H  +EF++++ P WHC+VG  +G+ V+ +   
Sbjct: 13 MSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72

Query: 61 FMYLSMGPFSILLFK 75
          F+Y  +G  +ILLFK
Sbjct: 73 FIYFYLGQVAILLFK 87

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.
Rattus norvegicus (taxid: 10116)

>sp|P63169|DYL1_RABIT Dynein light chain 1, cytoplasmic OS=Oryctolagus cuniculus GN=DYNLL1 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 47/75 (62%)

Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          M++ MQ  ++  A + L K N  K I+ H  +EF++++ P WHC+VG  +G+ V+ +   
Sbjct: 13 MSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72

Query: 61 FMYLSMGPFSILLFK 75
          F+Y  +G  +ILLFK
Sbjct: 73 FIYFYLGQVAILLFK 87

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Oryctolagus cuniculus (taxid: 9986)

>sp|P63168|DYL1_MOUSE Dynein light chain 1, cytoplasmic OS=Mus musculus GN=Dynll1 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 47/75 (62%)

Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          M++ MQ  ++  A + L K N  K I+ H  +EF++++ P WHC+VG  +G+ V+ +   
Sbjct: 13 MSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72

Query: 61 FMYLSMGPFSILLFK 75
          F+Y  +G  +ILLFK
Sbjct: 73 FIYFYLGQVAILLFK 87

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Mus musculus (taxid: 10090)

>sp|P61273|DYL1_MACFA Dynein light chain 1, cytoplasmic OS=Macaca fascicularis GN=DYNLL1 PE=3 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 47/75 (62%)

Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          M++ MQ  ++  A + L K N  K I+ H  +EF++++ P WHC+VG  +G+ V+ +   
Sbjct: 13 MSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72

Query: 61 FMYLSMGPFSILLFK 75
          F+Y  +G  +ILLFK
Sbjct: 73 FIYFYLGQVAILLFK 87

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Macaca fascicularis (taxid: 9541)

>sp|P63167|DYL1_HUMAN Dynein light chain 1, cytoplasmic OS=Homo sapiens GN=DYNLL1 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 47/75 (62%)

Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          M++ MQ  ++  A + L K N  K I+ H  +EF++++ P WHC+VG  +G+ V+ +   
Sbjct: 13 MSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72

Query: 61 FMYLSMGPFSILLFK 75
          F+Y  +G  +ILLFK
Sbjct: 73 FIYFYLGQVAILLFK 87

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Homo sapiens (taxid: 9606)

>sp|P61285|DYL1_BOVIN Dynein light chain 1, cytoplasmic OS=Bos taurus GN=DYNLL1 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 47/75 (62%)

Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          M++ MQ  ++  A + L K N  K I+ H  +EF++++ P WHC+VG  +G+ V+ +   
Sbjct: 13 MSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72

Query: 61 FMYLSMGPFSILLFK 75
          F+Y  +G  +ILLFK
Sbjct: 73 FIYFYLGQVAILLFK 87

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Bos taurus (taxid: 9913)

>sp|Q22799|DYL1_CAEEL Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans GN=dlc-1 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 45/75 (60%)

Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          M+  MQ   I  A + L K N  K I+ +  +EF++++ P WHC+VG  +G+ V+ +   
Sbjct: 13 MSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72

Query: 61 FMYLSMGPFSILLFK 75
          F+Y  +G  +ILLFK
Sbjct: 73 FIYFYLGQVAILLFK 87

Acts as a non-catalytic accessory component of a dynein complex.

Caenorhabditis elegans (taxid: 6239)

>sp|Q39580|DYL1_CHLRE Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii PE=1 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 46/75 (61%)

Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          M++ MQ+  +  A + L K N  K I+ +  +EF+R+  P WHC+VG  +G+ V+ +   
Sbjct: 15 MSEEMQADAVDCATQALEKYNIEKDIAAYIKKEFDRKHNPTWHCIVGRNFGSYVTHETKH 74

Query: 61 FMYLSMGPFSILLFK 75
          F+Y  +G  +ILLFK
Sbjct: 75 FIYFYLGQVAILLFK 89

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q24117|DYL1_DROME Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster GN=ctp PE=1 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 46/75 (61%)

Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          M++ MQ   +  A + L K N  K I+ +  +EF++++ P WHC+VG  +G+ V+ +   
Sbjct: 13 MSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRH 72

Query: 61 FMYLSMGPFSILLFK 75
          F+Y  +G  +ILLFK
Sbjct: 73 FIYFYLGQVAILLFK 87

Acts as a non-catalytic accessory component of a dynein complex.

Drosophila melanogaster (taxid: 7227)

>sp|Q78P75|DYL2_RAT Dynein light chain 2, cytoplasmic OS=Rattus norvegicus GN=Dynll2 PE=1 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 46/75 (61%)

Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          M++ MQ   +  A + + K N  K I+ +  +EF++++ P WHC+VG  +G+ V+ +   
Sbjct: 13 MSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72

Query: 61 FMYLSMGPFSILLFK 75
          F+Y  +G  +ILLFK
Sbjct: 73 FIYFYLGQVAILLFK 87

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
124805799	93	dynein light chain 1, putative [Plasmodi	0.925	0.806	0.426	6e-11
68071557	93	dynein light chain 1 [Plasmodium berghei	0.925	0.806	0.426	7e-11
62738692	102	Chain A, 1.65 Angstrom Structure Of The	0.925	0.735	0.426	1e-10
345561255	96	hypothetical protein AOL_s00193g79 [Arth	0.925	0.781	0.4	2e-10
126327472	89	PREDICTED: dynein light chain 1, cytopla	0.925	0.842	0.386	3e-10
197128346	89	putative dynein cytoplasmic light peptid	0.925	0.842	0.386	4e-10
429328607	98	dynein light chain 1, putative [Babesia	0.925	0.765	0.36	5e-10
156086060	96	dynein light chain 1 [Babesia bovis T2Bo	0.925	0.781	0.386	5e-10
340058215	90	putative dynein light chain [Trypanosoma	0.925	0.833	0.4	6e-10
390346842	89	PREDICTED: dynein light chain 1, cytopla	0.925	0.842	0.386	6e-10

>gi|124805799|ref|XP_001350541.1| dynein light chain 1, putative [Plasmodium falciparum 3D7] gi|156103085|ref|XP_001617235.1| dynein light chain 1 [Plasmodium vivax Sal-1] gi|221061287|ref|XP_002262213.1| Dynein light chain 1 [Plasmodium knowlesi strain H] gi|23496665|gb|AAN36221.1|AE014846_20 dynein light chain 1, putative [Plasmodium falciparum 3D7] gi|148806109|gb|EDL47508.1| dynein light chain 1, putative [Plasmodium vivax] gi|193811363|emb|CAQ42091.1| Dynein light chain 1, putative [Plasmodium knowlesi strain H] gi|389586245|dbj|GAB68974.1| dynein light chain 1 [Plasmodium cynomolgi strain B]

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 47/75 (62%)

Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          MT+ MQ   I  A + L K N  K I+ H  +EF+R++ P WHCVVG  +G+ V+ +  +
Sbjct: 17 MTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKN 76

Query: 61 FMYLSMGPFSILLFK 75
          F+Y  +G  +ILLFK
Sbjct: 77 FIYFYIGQVAILLFK 91

Source: Plasmodium falciparum 3D7

Species: Plasmodium falciparum

Genus: Plasmodium

Order: Haemosporida

Class: Aconoidasida

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|68071557|ref|XP_677692.1| dynein light chain 1 [Plasmodium berghei strain ANKA] gi|70950385|ref|XP_744520.1| dynein light chain 1 [Plasmodium chabaudi chabaudi] gi|83282655|ref|XP_729864.1| dynein light chain 1, cytoplasmic [Plasmodium yoelii yoelii 17XNL] gi|23488907|gb|EAA21429.1| dynein light chain 1, cytoplasmic [Plasmodium yoelii yoelii] gi|56497905|emb|CAH98597.1| dynein light chain 1, putative [Plasmodium berghei] gi|56524508|emb|CAH79734.1| dynein light chain 1, putative [Plasmodium chabaudi chabaudi]

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 47/75 (62%)

Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          MT+ MQ   I  A + L K N  K I+ H  +EF+R++ P WHCVVG  +G+ V+ +  +
Sbjct: 17 MTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKN 76

Query: 61 FMYLSMGPFSILLFK 75
          F+Y  +G  +ILLFK
Sbjct: 77 FIYFYIGQVAILLFK 91

Source: Plasmodium berghei strain ANKA

Species: Plasmodium berghei

Genus: Plasmodium

Order: Haemosporida

Class: Aconoidasida

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|62738692|pdb|1YO3|A Chain A, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From Plasmodium Falciparum gi|62738693|pdb|1YO3|B Chain B, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From Plasmodium Falciparum gi|62738694|pdb|1YO3|C Chain C, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From Plasmodium Falciparum

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 47/75 (62%)

Query: 1   MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
           MT+ MQ   I  A + L K N  K I+ H  +EF+R++ P WHCVVG  +G+ V+ +  +
Sbjct: 26  MTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKN 85

Query: 61  FMYLSMGPFSILLFK 75
           F+Y  +G  +ILLFK
Sbjct: 86  FIYFYIGQVAILLFK 100

Source: Plasmodium falciparum 3D7

Species: Plasmodium falciparum

Genus: Plasmodium

Order: Haemosporida

Class: Aconoidasida

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|345561255|gb|EGX44351.1| hypothetical protein AOL_s00193g79 [Arthrobotrys oligospora ATCC 24927]

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 47/75 (62%)

Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          M +PMQ   I +A++ + K N  K I+QH  +EF+ +F   WHC+VG  +G+ V+ +   
Sbjct: 20 MAEPMQEDAIKVAQEAMEKWNIEKDIAQHIKKEFDNRFGSTWHCIVGRNFGSFVTHETKH 79

Query: 61 FMYLSMGPFSILLFK 75
          F+Y  +G  +ILLFK
Sbjct: 80 FIYFYLGHVAILLFK 94

Source: Arthrobotrys oligospora ATCC 24927

Species: Arthrobotrys oligospora

Genus: Orbilia

Family: Orbiliaceae

Order: Orbiliales

Class: Orbiliomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|126327472|ref|XP_001368275.1| PREDICTED: dynein light chain 1, cytoplasmic-like [Monodelphis domestica] gi|395520963|ref|XP_003764591.1| PREDICTED: dynein light chain 1, cytoplasmic-like [Sarcophilus harrisii]

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 47/75 (62%)

Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          M++ MQ  ++  A + L K N  K I+ H  +EF++++ P WHC+VG  +G+ V+ +   
Sbjct: 13 MSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72

Query: 61 FMYLSMGPFSILLFK 75
          F+Y  MG  +ILLFK
Sbjct: 73 FIYFYMGQVAILLFK 87

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|197128346|gb|ACH44844.1| putative dynein cytoplasmic light peptide transcript variant 1 [Taeniopygia guttata]

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 47/75 (62%)

Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          M+K MQ  ++  A + L K N  K I+ H  +EF++++ P WHC+VG  +G+ V+ +   
Sbjct: 13 MSKEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72

Query: 61 FMYLSMGPFSILLFK 75
          F+Y  +G  +ILLFK
Sbjct: 73 FIYFYLGQVAILLFK 87

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|429328607|gb|AFZ80367.1| dynein light chain 1, putative [Babesia equi]

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 46/75 (61%)

Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          M + MQ + + +A   L K +  K I+ H  +EF++ + P WHC+VG  +G+ V+ +K  
Sbjct: 22 MDENMQKYALEVAEHALSKFDVEKDIAAHIKKEFDKTYSPTWHCIVGRSFGSYVTHEKDH 81

Query: 61 FMYLSMGPFSILLFK 75
          F+Y  +G  ++LLFK
Sbjct: 82 FIYFYIGNTAVLLFK 96

Source: Babesia equi

Species: Babesia equi

Genus: Babesia

Family: Babesiidae

Class: Aconoidasida

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|156086060|ref|XP_001610439.1| dynein light chain 1 [Babesia bovis T2Bo] gi|154797692|gb|EDO06871.1| dynein light chain 1, putative [Babesia bovis]

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 46/75 (61%)

Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          M +P + F + +A   + K    K I+ +  REF+++F P WHCVVG  +G+ V+ +K  
Sbjct: 20 MDEPTKKFALELASDAIEKFKIEKDIAAYMKREFDKRFDPTWHCVVGRNFGSYVTHEKHC 79

Query: 61 FMYLSMGPFSILLFK 75
          F+Y  +G  +ILLFK
Sbjct: 80 FIYFYIGSIAILLFK 94

Source: Babesia bovis T2Bo

Species: Babesia bovis

Genus: Babesia

Family: Babesiidae

Class: Aconoidasida

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|340058215|emb|CCC52569.1| putative dynein light chain [Trypanosoma vivax Y486] gi|340058218|emb|CCC52572.1| putative dynein light chain [Trypanosoma vivax Y486]

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 48/75 (64%)

Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          M + MQS  I +A + + K N  K I+ +  +EF+R+++P WHC+VG  +G+ V+ +  S
Sbjct: 14 MPEDMQSDAIEVALQAMEKFNIEKDIAAYIKKEFDRKYQPTWHCIVGRNFGSYVTHETHS 73

Query: 61 FMYLSMGPFSILLFK 75
          F+Y   G  +ILLFK
Sbjct: 74 FLYFYFGQVAILLFK 88

Source: Trypanosoma vivax Y486

Species: Trypanosoma vivax

Genus: Trypanosoma

Family: Trypanosomatidae

Order: Kinetoplastida

Superkingdom: Eukaryota

>gi|390346842|ref|XP_003726637.1| PREDICTED: dynein light chain 1, cytoplasmic-like [Strongylocentrotus purpuratus]

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 47/75 (62%)

Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          M++ MQ  +I  A + + K N  K I+ H  +EF++++ P WHC+VG  +G+ V+ +   
Sbjct: 13 MSEDMQQDSIECATQAMEKFNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72

Query: 61 FMYLSMGPFSILLFK 75
          F+Y  MG  +ILLFK
Sbjct: 73 FIYFYMGQVAILLFK 87

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
GENEDB_PFALCIPARUM|PFL0660w	93	PFL0660w "dynein light chain 1	0.925	0.806	0.426	6.4e-12
UNIPROTKB|Q8I5R9	93	PFL0660w "Dynein light chain 1	0.925	0.806	0.426	6.4e-12
UNIPROTKB|G3MX54	89	G3MX54 "Uncharacterized protei	0.925	0.842	0.386	2.8e-11
UNIPROTKB|F1N8L5	108	LOC100859081 "Uncharacterized	0.925	0.694	0.373	3.5e-11
UNIPROTKB|F1ME41	89	F1ME41 "Uncharacterized protei	0.925	0.842	0.373	3.5e-11
UNIPROTKB|P61285	89	DYNLL1 "Dynein light chain 1,	0.925	0.842	0.373	3.5e-11
UNIPROTKB|E2RK00	89	DYNLL1 "Uncharacterized protei	0.925	0.842	0.373	3.5e-11
UNIPROTKB|P63167	89	DYNLL1 "Dynein light chain 1,	0.925	0.842	0.373	3.5e-11
UNIPROTKB|D9U8D1	89	LC8 "Uncharacterized protein"	0.925	0.842	0.373	3.5e-11
UNIPROTKB|P61273	89	DYNLL1 "Dynein light chain 1,	0.925	0.842	0.373	3.5e-11

GENEDB_PFALCIPARUM|PFL0660w PFL0660w "dynein light chain 1, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 32/75 (42%), Positives = 47/75 (62%)

Query:     1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
             MT+ MQ   I  A + L K N  K I+ H  +EF+R++ P WHCVVG  +G+ V+ +  +
Sbjct:    17 MTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKN 76

Query:    61 FMYLSMGPFSILLFK 75
             F+Y  +G  +ILLFK
Sbjct:    77 FIYFYIGQVAILLFK 91

GO:0005868 "cytoplasmic dynein complex" evidence=ISS

GO:0007018 "microtubule-based movement" evidence=ISS

UNIPROTKB|Q8I5R9 PFL0660w "Dynein light chain 1, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 32/75 (42%), Positives = 47/75 (62%)

Query:     1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
             MT+ MQ   I  A + L K N  K I+ H  +EF+R++ P WHCVVG  +G+ V+ +  +
Sbjct:    17 MTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKN 76

Query:    61 FMYLSMGPFSILLFK 75
             F+Y  +G  +ILLFK
Sbjct:    77 FIYFYIGQVAILLFK 91

GO:0005868 "cytoplasmic dynein complex" evidence=ISS

GO:0007018 "microtubule-based movement" evidence=ISS

UNIPROTKB|G3MX54 G3MX54 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 29/75 (38%), Positives = 46/75 (61%)

Query:     1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
             MT+ MQ  ++  A + L K N  K I  H  +EF++++ P WHC+VG  +G+ V+ +   
Sbjct:    13 MTEEMQQDSVECAAQALEKYNIEKDIVAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72

Query:    61 FMYLSMGPFSILLFK 75
             F+Y  +G  +ILLFK
Sbjct:    73 FIYFYLGQVAILLFK 87

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

UNIPROTKB|F1N8L5 LOC100859081 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 28/75 (37%), Positives = 47/75 (62%)

Query:     1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
             M++ MQ  ++  A + L K N  K I+ H  +EF++++ P WHC+VG  +G+ V+ +   
Sbjct:    32 MSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 91

Query:    61 FMYLSMGPFSILLFK 75
             F+Y  +G  +ILLFK
Sbjct:    92 FIYFYLGQVAILLFK 106

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0042326 "negative regulation of phosphorylation" evidence=IEA

UNIPROTKB|F1ME41 F1ME41 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 28/75 (37%), Positives = 47/75 (62%)

Query:     1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
             M++ MQ  ++  A + L K N  K I+ H  +EF++++ P WHC+VG  +G+ V+ +   
Sbjct:    13 MSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72

Query:    61 FMYLSMGPFSILLFK 75
             F+Y  +G  +ILLFK
Sbjct:    73 FIYFYLGQVAILLFK 87

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

UNIPROTKB|P61285 DYNLL1 "Dynein light chain 1, cytoplasmic" [Bos taurus (taxid:9913)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 28/75 (37%), Positives = 47/75 (62%)

Query:     1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
             M++ MQ  ++  A + L K N  K I+ H  +EF++++ P WHC+VG  +G+ V+ +   
Sbjct:    13 MSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72

Query:    61 FMYLSMGPFSILLFK 75
             F+Y  +G  +ILLFK
Sbjct:    73 FIYFYLGQVAILLFK 87

GO:0072686 "mitotic spindle" evidence=ISS

GO:0000776 "kinetochore" evidence=ISS

GO:0005868 "cytoplasmic dynein complex" evidence=IDA

GO:0005739 "mitochondrion" evidence=IEA

GO:0042326 "negative regulation of phosphorylation" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

UNIPROTKB|E2RK00 DYNLL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 28/75 (37%), Positives = 47/75 (62%)

Query:     1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
             M++ MQ  ++  A + L K N  K I+ H  +EF++++ P WHC+VG  +G+ V+ +   
Sbjct:    13 MSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72

Query:    61 FMYLSMGPFSILLFK 75
             F+Y  +G  +ILLFK
Sbjct:    73 FIYFYLGQVAILLFK 87

GO:0042326 "negative regulation of phosphorylation" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

UNIPROTKB|P63167 DYNLL1 "Dynein light chain 1, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 28/75 (37%), Positives = 47/75 (62%)

Query:     1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
             M++ MQ  ++  A + L K N  K I+ H  +EF++++ P WHC+VG  +G+ V+ +   
Sbjct:    13 MSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72

Query:    61 FMYLSMGPFSILLFK 75
             F+Y  +G  +ILLFK
Sbjct:    73 FIYFYLGQVAILLFK 87

GO:0007017 "microtubule-based process" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0030235 "nitric-oxide synthase regulator activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042326 "negative regulation of phosphorylation" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005868 "cytoplasmic dynein complex" evidence=ISS

GO:0005813 "centrosome" evidence=IDA

GO:0008180 "signalosome" evidence=IDA

GO:0000776 "kinetochore" evidence=IDA

GO:0072686 "mitotic spindle" evidence=IDA

GO:0030036 "actin cytoskeleton organization" evidence=TAS

GO:0007292 "female gamete generation" evidence=TAS

GO:0009653 "anatomical structure morphogenesis" evidence=TAS

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

UNIPROTKB|D9U8D1 LC8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 28/75 (37%), Positives = 47/75 (62%)

Query:     1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
             M++ MQ  ++  A + L K N  K I+ H  +EF++++ P WHC+VG  +G+ V+ +   
Sbjct:    13 MSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72

Query:    61 FMYLSMGPFSILLFK 75
             F+Y  +G  +ILLFK
Sbjct:    73 FIYFYLGQVAILLFK 87

GO:0042326 "negative regulation of phosphorylation" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

UNIPROTKB|P61273 DYNLL1 "Dynein light chain 1, cytoplasmic" [Macaca fascicularis (taxid:9541)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 28/75 (37%), Positives = 47/75 (62%)

Query:     1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
             M++ MQ  ++  A + L K N  K I+ H  +EF++++ P WHC+VG  +G+ V+ +   
Sbjct:    13 MSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72

Query:    61 FMYLSMGPFSILLFK 75
             F+Y  +G  +ILLFK
Sbjct:    73 FIYFYLGQVAILLFK 87

GO:0000776 "kinetochore" evidence=ISS

GO:0005868 "cytoplasmic dynein complex" evidence=ISS

GO:0072686 "mitotic spindle" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q22799	DYL1_CAEEL	No assigned EC number	0.3733	0.9259	0.8426	yes	N/A
Q6FUJ0	DYL1_CANGA	No assigned EC number	0.28	0.9259	0.8720	yes	N/A
Q9UR05	DYL1_SCHPO	No assigned EC number	0.36	0.9259	0.8823	yes	N/A
Q6BZF8	DYL1_DEBHA	No assigned EC number	0.24	0.9259	0.8241	yes	N/A
Q86A88	DYL_DICDI	No assigned EC number	0.3239	0.8765	0.7802	yes	N/A
O94111	DYL1_EMENI	No assigned EC number	0.3636	0.9506	0.8191	yes	N/A
Q6CWX4	DYL1_KLULA	No assigned EC number	0.2705	0.9259	0.8620	yes	N/A
P63170	DYL1_RAT	No assigned EC number	0.3733	0.9259	0.8426	yes	N/A
P61285	DYL1_BOVIN	No assigned EC number	0.3733	0.9259	0.8426	yes	N/A
Q24117	DYL1_DROME	No assigned EC number	0.36	0.9259	0.8426	yes	N/A
Q02647	DYL1_YEAST	No assigned EC number	0.2533	0.9259	0.8152	yes	N/A
P63167	DYL1_HUMAN	No assigned EC number	0.3733	0.9259	0.8426	yes	N/A
O96860	DYL2_DROME	No assigned EC number	0.36	0.9259	0.8426	yes	N/A
P63168	DYL1_MOUSE	No assigned EC number	0.3733	0.9259	0.8426	yes	N/A
P63169	DYL1_RABIT	No assigned EC number	0.3733	0.9259	0.8426	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	81
pfam01221	86	pfam01221, Dynein_light, Dynein light chain type 1	2e-22
PTZ00059	90	PTZ00059, PTZ00059, dynein light chain; Provisiona	5e-16
PLN03058	128	PLN03058, PLN03058, dynein light chain type 1 fami	1e-10

>gnl|CDD|189895 pfam01221, Dynein_light, Dynein light chain type 1

 Score = 81.8 bits (203), Expect = 2e-22
 Identities = 28/75 (37%), Positives = 44/75 (58%)

Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          M + MQ   I  A + L K N  K I+ H  +EF++++ P WHC+VG  +G+ V+ +   
Sbjct: 10 MPEEMQEDAIECAAEALEKFNVEKDIAAHIKKEFDKKYGPTWHCIVGKNFGSYVTHETKH 69

Query: 61 FMYLSMGPFSILLFK 75
          F+Y  +G  + LLFK
Sbjct: 70 FIYFYIGQLAFLLFK 84

Length = 86

>gnl|CDD|185421 PTZ00059, PTZ00059, dynein light chain; Provisional

 Score = 65.6 bits (160), Expect = 5e-16
 Identities = 28/75 (37%), Positives = 46/75 (61%)

Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          M++ MQ   I  A + L K N  K I+ +  +EF++++ P WHC+VG  +G+ V+ +   
Sbjct: 14 MSEDMQQDAIDCANQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 73

Query: 61 FMYLSMGPFSILLFK 75
          F+Y  +G  +ILLFK
Sbjct: 74 FIYFYLGQVAILLFK 88

Length = 90

>gnl|CDD|166697 PLN03058, PLN03058, dynein light chain type 1 family protein; Provisional

 Score = 53.1 bits (127), Expect = 1e-10
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 3/84 (3%)

Query: 1   MTKPMQSFTIAMARKILLKTN---NPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQ 57
           M   +Q+   + AR IL       + K ++    +EF+  + P WHC+VG  +G+ V+  
Sbjct: 43  MPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFDSAYGPAWHCIVGTSFGSYVTHS 102

Query: 58  KGSFMYLSMGPFSILLFKIQDEAL 81
            G F+Y S+    ILLFK   E L
Sbjct: 103 TGGFLYFSIDKVYILLFKTAVEPL 126

Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	81
KOG3430|consensus	90		100.0
PTZ00059	90	dynein light chain; Provisional	100.0
PLN03058	128	dynein light chain type 1 family protein; Provisio	100.0
PF01221	89	Dynein_light: Dynein light chain type 1 ; InterPro	100.0
PF04155	76	Ground-like: Ground-like domain; InterPro: IPR0072	97.61
PF05075	345	DUF684: Protein of unknown function (DUF684); Inte	90.92
PF10703	265	MoaF: Molybdenum cofactor biosynthesis protein F;	85.13
PF15650	89	Tox-REase-9: Restriction endonuclease fold toxin 9	83.35

>KOG3430|consensus

Probab=100.00  E-value=1.4e-41  Score=206.99  Aligned_cols=77  Identities=39%  Similarity=0.790  Sum_probs=75.6

Q ss_pred             CChHHHHHHHHHHHHHHHhCC-ChHHHHHHHHHHhhccCCCceEEEEeCccceeEEeccCcEEEEEeCCEEEEEEeeC
Q psy1880           1 MTKPMQSFTIAMARKILLKTN-NPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSMGPFSILLFKIQ   77 (81)
Q Consensus         1 M~~~mq~~~~~~~~~a~~~~~-~~k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~vth~~~~~i~F~~~~~~illfk~~   77 (81)
                      ||++||++|+++|++|+++|+ ++++||..||++||++|||+||||||++|||+|||++++||||++|.++|||||++
T Consensus        13 M~~~mq~~a~~~a~~al~~f~~~~k~iA~~iKkefDkkyG~~WhcivG~~FGs~vThe~g~Fiyf~~g~l~illfK~~   90 (90)
T KOG3430|consen   13 MPEEMQQEAIELARQALEKFNVIEKDIAAFIKKEFDKKYGPTWHCIVGRNFGSYVTHETGHFIYFYLGVLAILLFKCA   90 (90)
T ss_pred             CChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhcCCccEEEEcCCcceEEEeecCcEEEEEeceEEEEEEecC
Confidence            999999999999999999999 88999999999999999999999999999999999999999999999999999984

>PTZ00059 dynein light chain; Provisional

Probab=100.00  E-value=9.5e-41  Score=204.93  Aligned_cols=77  Identities=36%  Similarity=0.715  Sum_probs=76.0

Q ss_pred             CChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhccCCCceEEEEeCccceeEEeccCcEEEEEeCCEEEEEEeeC
Q psy1880           1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSMGPFSILLFKIQ   77 (81)
Q Consensus         1 M~~~mq~~~~~~~~~a~~~~~~~k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~vth~~~~~i~F~~~~~~illfk~~   77 (81)
                      ||++||++|+++|.+|++++++++|||++||++||++|||+||||||++|||+|||++++||||++|+++|||||++
T Consensus        14 M~~emq~~a~~~~~~Al~~~~~~kdiA~~IK~~fD~~yg~~WhciVG~~Fgs~vthe~~~~i~F~~~~~~vLlfK~~   90 (90)
T PTZ00059         14 MSEDMQQDAIDCANQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG   90 (90)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhhcCCCCEEEEecCeeEEEEEeCCcEEEEEECCEEEEEEecC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999985

>PLN03058 dynein light chain type 1 family protein; Provisional

Probab=100.00  E-value=1.5e-40  Score=215.15  Aligned_cols=81  Identities=35%  Similarity=0.682  Sum_probs=78.6

Q ss_pred             CChHHHHHHHHHHHHHHHhCC---ChHHHHHHHHHHhhccCCCceEEEEeCccceeEEeccCcEEEEEeCCEEEEEEeeC
Q psy1880           1 MTKPMQSFTIAMARKILLKTN---NPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSMGPFSILLFKIQ   77 (81)
Q Consensus         1 M~~~mq~~~~~~~~~a~~~~~---~~k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~vth~~~~~i~F~~~~~~illfk~~   77 (81)
                      ||++||++|+++|.+|+++++   +++|||++||++||++|||+||||||++|||+|||++++||||++|+++||||||+
T Consensus        43 M~~emQ~~ave~a~~Al~k~~~~~~ekdIA~~IKk~fDkkYG~tWHCIVGk~FGs~VTHe~~~fIyF~ig~~aiLLfKt~  122 (128)
T PLN03058         43 MPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYFSIDKVYILLFKTA  122 (128)
T ss_pred             CCHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhhhhCCceEEEECCcEEEEEEEcCCcEEEEEECCEEEEEEecc
Confidence            999999999999999999974   67999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC
Q psy1880          78 DEAL   81 (81)
Q Consensus        78 ~~~~   81 (81)
                      .+|+
T Consensus       123 ~~~~  126 (128)
T PLN03058        123 VEPL  126 (128)
T ss_pred             CccC
Confidence            9986

>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella

Probab=100.00  E-value=1.2e-38  Score=194.53  Aligned_cols=77  Identities=34%  Similarity=0.795  Sum_probs=73.5

Q ss_pred             CChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhccCCCceEEEEeCccceeEEeccCcEEEEEeCCEEEEEEeeC
Q psy1880           1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSMGPFSILLFKIQ   77 (81)
Q Consensus         1 M~~~mq~~~~~~~~~a~~~~~~~k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~vth~~~~~i~F~~~~~~illfk~~   77 (81)
                      ||++||++|+++|.+|++++++++|+|++||++||++|||+||||||++|||++||++++++||++++++||||||+
T Consensus        13 M~~~~~~~~~~~~~~a~~~~~~~~eiA~~iK~~lD~~yG~~Wh~IVG~~Fg~~~th~~~~~~~f~~~~~~~li~kt~   89 (89)
T PF01221_consen   13 MPEEMQEEAIELAKEALKKYQDEKEIAEFIKQELDKKYGPTWHCIVGKSFGSSVTHEPGTFLYFKIGNIAFLIFKTQ   89 (89)
T ss_dssp             S-HHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHSS-EEEEEESEEEEEEEEETTEEEEEEETTEEEEEEEE-
T ss_pred             CCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhcccCCceEEEECCcEEEEEEEcCCcEEEEEECCEEEEEEecC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999985

The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....

>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae

Probab=97.61  E-value=0.0016  Score=38.30  Aligned_cols=59  Identities=8%  Similarity=0.151  Sum_probs=48.2

Q ss_pred             HHHHhCCChHHHHHHHHHHhhccCCCceEEEEeC-ccceeEEeccCcEEEEEeCCEEEEEEe
Q psy1880          15 KILLKTNNPKAISQHFLREFNRQFKPNWHCVVGH-CYGACVSFQKGSFMYLSMGPFSILLFK   75 (81)
Q Consensus        15 ~a~~~~~~~k~iA~~iK~~lD~~yg~~WhciVG~-~Fgs~vth~~~~~i~F~~~~~~illfk   75 (81)
                      ++++. .+..++++.|-+.++++||+.+-||+++ +|....... ..|.-...+++..++|+
T Consensus        17 ~~~~~-~~~~~s~~~Iq~~~e~~f~~~f~vIcs~~~Fsy~~~~~-~~~C~~~~~g~~c~af~   76 (76)
T PF04155_consen   17 KNMKE-CNLSISKRAIQKAAEKRFGGSFEVICSEGDFSYSTHTD-DLYCKVEKNGVTCLAFA   76 (76)
T ss_pred             HHhcc-CCHHHHHHHHHHHHHHHhCCCEEEEEeCCCceeEEecc-cceeeeeeCCEEEEEEC
Confidence            44443 6678899999999999999999999998 565554444 78888899999999985

It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].

>PF05075 DUF684: Protein of unknown function (DUF684); InterPro: IPR007767 This family contains uncharacterised proteins from Caenorhabditis elegans

Probab=90.92  E-value=4.1  Score=30.12  Aligned_cols=55  Identities=5%  Similarity=0.224  Sum_probs=37.2

Q ss_pred             ChHHHHHHHHHHhhccCC-CceEEEEeC------c--cceeEEeccCcEEE-EEeCCEEEEEEee
Q psy1880          22 NPKAISQHFLREFNRQFK-PNWHCVVGH------C--YGACVSFQKGSFMY-LSMGPFSILLFKI   76 (81)
Q Consensus        22 ~~k~iA~~iK~~lD~~yg-~~WhciVG~------~--Fgs~vth~~~~~i~-F~~~~~~illfk~   76 (81)
                      +..+.|..||+.||+..- -.+-+||-.      +  |-+...+....+|. |.-|+..++||||
T Consensus       187 sn~eKAd~Ik~~Le~ilTnDsFYIiVfd~~~~~~~~~~y~~~~~~~dq~I~s~~rGgcNv~VYRS  251 (345)
T PF05075_consen  187 SNEEKADEIKKKLEKILTNDSFYIIVFDDCSGYDNHYYYGFYDNNEDQYIESFNRGGCNVFVYRS  251 (345)
T ss_pred             ChHHHHHHHHHHHHhhCCCCcEEEEEecccccCCccceeeeccCcccCEEEEEeCCCeEEEEEee
Confidence            346899999999999653 367888822      1  11111344555555 5678999999999

>PF10703 MoaF: Molybdenum cofactor biosynthesis protein F; InterPro: IPR024724 Molybdenum cofactor biosynthesis protein F (MoaF) is essential for the production of the monoamine-inducible 30kDa protein in Klebsiella []

Probab=85.13  E-value=1.8  Score=31.35  Aligned_cols=33  Identities=15%  Similarity=0.490  Sum_probs=25.6

Q ss_pred             ceEEEEeCccceeEEeccCcEEEEEe-CCEEEEEEee
Q psy1880          41 NWHCVVGHCYGACVSFQKGSFMYLSM-GPFSILLFKI   76 (81)
Q Consensus        41 ~WhciVG~~Fgs~vth~~~~~i~F~~-~~~~illfk~   76 (81)
                      +|||+.|.+=|-.   +....-++++ +++.++.|+=
T Consensus       182 ~W~CL~G~e~Gla---D~D~c~~~Ki~d~lYlf~WrE  215 (265)
T PF10703_consen  182 AWQCLSGVEKGLA---DTDRCHYYKIADNLYLFTWRE  215 (265)
T ss_pred             EEEEeeccccCCC---CccceEEEEecCCEEEEEEEe
Confidence            7999999876644   4577888888 4688888873

It is necessary for reconstituting organoautotrophic growth in Ralstonia eutropha []. MoaF is conserved in proteobacteria and some lower eukaryotes. The operon regulating the Moa genes is responsible for molybdenum cofactor biosynthesis.

>PF15650 Tox-REase-9: Restriction endonuclease fold toxin 9

Probab=83.35  E-value=1  Score=27.58  Aligned_cols=20  Identities=10%  Similarity=0.514  Sum_probs=16.5

Q ss_pred             HHHHHHhhccCCCceEEEEe
Q psy1880          28 QHFLREFNRQFKPNWHCVVG   47 (81)
Q Consensus        28 ~~iK~~lD~~yg~~WhciVG   47 (81)
                      +.=|++|...||.+|-|||-
T Consensus        68 ~~Y~~el~~~~G~~W~~~l~   87 (89)
T PF15650_consen   68 ENYKQELEKIYGGGWKTRLE   87 (89)
T ss_pred             HHHHHHhcCccCCCeeEEee
Confidence            34468899999999999983

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	81
1yo3_A	102	1.65 Angstrom Structure Of The Dynein Light Chain 1		2e-13
1cmi_A	85	Structure Of The Human PinLC8 DIMER WITH A BOUND PE		1e-12
1f3c_A	89	Refined Solution Structure Of 8kda Dynein Light Cha		2e-12
2pg1_A	91	Structural Analysis Of A Cytoplasmic Dynein Light C		1e-11
3brl_A	89	Crystal Structure Of Lc8 S88e SWA Length = 89		1e-11
1rhw_A	89	The Solution Structure Of The Ph-Induced Monomer Of		1e-11
1pwj_A	89	Structure Of The Monomeric 8-Kda Dynein Light Chain		2e-11
3p8m_A	92	Human Dynein Light Chain (Dynll2) In Complex With A		2e-11
1re6_A	94	Localisation Of Dynein Light Chains 1 And 2 And The		3e-11
3dvh_A	91	Lc8 Point Mutant K36p Length = 91		8e-11
3rjs_A	89	Crystal Structure Of Dynein Light Chain 8a (Dlc8) F		2e-10
1pwk_A	91	Structure Of The Monomeric 8-Kda Dynein Light Chain		4e-10
4ds1_A	97	The Structure Of A Yeast Dyn2-Nup159 Complex And Th		7e-07

>pdb|1YO3|A Chain A, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From Plasmodium Falciparum Length = 102

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 1   MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
           MT+ MQ   I  A + L K N  K I+ H  +EF+R++ P WHCVVG  +G+ V+ +  +
Sbjct: 26  MTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKN 85
Query: 61  FMYLSMGPFSILLFK 75
           F+Y  +G  +ILLFK
Sbjct: 86  FIYFYIGQVAILLFK 100

>pdb|1CMI|A Chain A, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE Length = 85

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 47/75 (62%)
Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          M++ MQ  ++  A + L K N  K I+ H  +EF++++ P WHC+VG  +G+ V+ +   
Sbjct: 9  MSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 68
Query: 61 FMYLSMGPFSILLFK 75
          F+Y  +G  +ILLFK
Sbjct: 69 FIYFYLGQVAILLFK 83

>pdb|1F3C|A Chain A, Refined Solution Structure Of 8kda Dynein Light Chain (Dlc8) Length = 89

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 47/75 (62%)
Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          M++ MQ  ++  A + L K N  K I+ H  +EF++++ P WHC+VG  +G+ V+ +   
Sbjct: 13 MSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72
Query: 61 FMYLSMGPFSILLFK 75
          F+Y  +G  +ILLFK
Sbjct: 73 FIYFYLGQVAILLFK 87

>pdb|2PG1|A Chain A, Structural Analysis Of A Cytoplasmic Dynein Light Chain- Intermediate Chain Complex Length = 91

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          M++ MQ   +  A + L K N  K I+ +  +EF++++ P WHC+VG  +G+ V+ +   
Sbjct: 15 MSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRH 74
Query: 61 FMYLSMGPFSILLFK 75
          F+Y  +G  +ILLFK
Sbjct: 75 FIYFYLGQVAILLFK 89

>pdb|3BRL|A Chain A, Crystal Structure Of Lc8 S88e SWA Length = 89

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          M++ MQ   +  A + L K N  K I+ +  +EF++++ P WHC+VG  +G+ V+ +   
Sbjct: 13 MSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRH 72
Query: 61 FMYLSMGPFSILLFK 75
          F+Y  +G  +ILLFK
Sbjct: 73 FIYFYLGQVAILLFK 87

>pdb|1RHW|A Chain A, The Solution Structure Of The Ph-Induced Monomer Of Dynein Light Chain Lc8 From Drosophila Length = 89

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          M++ MQ   +  A + L K N  K I+ +  +EF++++ P WHC+VG  +G+ V+ +   
Sbjct: 13 MSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRH 72
Query: 61 FMYLSMGPFSILLFK 75
          F+Y  +G  +ILLFK
Sbjct: 73 FIYFYLGQVAILLFK 87

>pdb|1PWJ|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And Mechanism Of Domain Swapped Dimer Assembly Length = 89

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 46/75 (61%)
Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          M++ MQ   +  A + + K N  K I+ +  +EF++++ P WHC+VG  +G+ V+ +   
Sbjct: 13 MSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72
Query: 61 FMYLSMGPFSILLFK 75
          F+Y  +G  +ILLFK
Sbjct: 73 FIYFYLGQVAILLFK 87

>pdb|3P8M|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In Vitro Evolved Peptide Dimerized By Leucine Zipper Length = 92

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 46/75 (61%)
Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          M++ MQ   +  A + + K N  K I+ +  +EF++++ P WHC+VG  +G+ V+ +   
Sbjct: 16 MSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 75
Query: 61 FMYLSMGPFSILLFK 75
          F+Y  +G  +ILLFK
Sbjct: 76 FIYFYLGQVAILLFK 90

>pdb|1RE6|A Chain A, Localisation Of Dynein Light Chains 1 And 2 And Their Pro- Apoptotic Ligands Length = 94

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 46/75 (61%)
Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          M++ MQ   +  A + + K N  K I+ +  +EF++++ P WHC+VG  +G+ V+ +   
Sbjct: 18 MSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 77
Query: 61 FMYLSMGPFSILLFK 75
          F+Y  +G  +ILLFK
Sbjct: 78 FIYFYLGQVAILLFK 92

>pdb|3DVH|A Chain A, Lc8 Point Mutant K36p Length = 91

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          M++ MQ   +  A + L K N    I+ +  +EF++++ P WHC+VG  +G+ V+ +   
Sbjct: 15 MSEEMQQDAVDCATQALEKYNIEPDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRH 74
Query: 61 FMYLSMGPFSILLFK 75
          F+Y  +G  +ILLFK
Sbjct: 75 FIYFYLGQVAILLFK 89

>pdb|3RJS|A Chain A, Crystal Structure Of Dynein Light Chain 8a (Dlc8) From Toxoplasma Gondii At 1.5 A Resolution Length = 89

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          M + +Q   I  A + L K N  K I+    +EF+R+  P WHCVVG  +G+ V+ +   
Sbjct: 13 MPEDLQQDAIDCANQALEKYNIEKDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHETHH 72
Query: 61 FMYLSMGPFSILLFK 75
          F+Y  +G  ++LLFK
Sbjct: 73 FIYFYIGQVAVLLFK 87

>pdb|1PWK|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And Mechanism Of Domain Swapped Dimer Assembly Length = 91

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHC--YGACVSFQK 58
          M++ MQ   +  A + + K N  K I+ +  +EF++++ P WHC+VG    +G+ V+ + 
Sbjct: 13 MSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRSGNFGSYVTHET 72
Query: 59 GSFMYLSMGPFSILLFK 75
            F+Y  +G  +ILLFK
Sbjct: 73 KHFIYFYLGQVAILLFK 89

>pdb|4DS1|A Chain A, The Structure Of A Yeast Dyn2-Nup159 Complex And The Molecular Basis For The Dynein Light Chain - Nuclear Pore Interaction Length = 97

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 42/75 (56%)
Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          +T  ++   + +++  L K    + I+    ++ + ++   WH +VG  +G+ V+ +KG 
Sbjct: 21 ITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGH 80
Query: 61 FMYLSMGPFSILLFK 75
          F+Y  +GP + L+FK
Sbjct: 81 FVYFYIGPLAFLVFK 95

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	81
1yo3_A	102	Dynein light chain 1; structural genomics consorti	1e-20
4ds1_A	97	Dynein light chain 1, cytoplasmic; dynein light ch	3e-20

>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ... Length = 102

 Score = 77.2 bits (190), Expect = 1e-20
 Identities = 32/75 (42%), Positives = 47/75 (62%)

Query: 1   MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
           MT+ MQ   I  A + L K N  K I+ H  +EF+R++ P WHCVVG  +G+ V+ +  +
Sbjct: 26  MTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKN 85

Query: 61  FMYLSMGPFSILLFK 75
           F+Y  +G  +ILLFK
Sbjct: 86  FIYFYIGQVAILLFK 100

>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae} Length = 97

 Score = 75.9 bits (187), Expect = 3e-20
 Identities = 19/75 (25%), Positives = 42/75 (56%)

Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          +T  ++   + +++  L K    + I+    ++ + ++   WH +VG  +G+ V+ +KG 
Sbjct: 21 ITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGH 80

Query: 61 FMYLSMGPFSILLFK 75
          F+Y  +GP + L+FK
Sbjct: 81 FVYFYIGPLAFLVFK 95

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	81
3rjs_A	89	Dynein light chain motor protein; parasite, LC8, D	100.0
4ds1_A	97	Dynein light chain 1, cytoplasmic; dynein light ch	100.0
1yo3_A	102	Dynein light chain 1; structural genomics consorti	100.0
1use_A	45	VAsp, vasodilator-stimulated phosphoprotein; signa	80.76

>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...

Probab=100.00  E-value=5.9e-43  Score=213.49  Aligned_cols=77  Identities=36%  Similarity=0.694  Sum_probs=76.2

Q ss_pred             CChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhccCCCceEEEEeCccceeEEeccCcEEEEEeCCEEEEEEeeC
Q psy1880           1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSMGPFSILLFKIQ   77 (81)
Q Consensus         1 M~~~mq~~~~~~~~~a~~~~~~~k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~vth~~~~~i~F~~~~~~illfk~~   77 (81)
                      ||++||++|+++|.+|+++++.++|||++||++||++|||+||||||++|||+|||++++||||++|+++|||||||
T Consensus        13 M~~emq~~a~~~a~~al~~~~~ek~iA~~IK~~fD~kyg~~WhciVG~~Fgs~vthe~~~fiyF~~g~~~iLlfKtg   89 (89)
T 3rjs_A           13 MPEDLQQDAIDCANQALEKYNIEKDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHETHHFIYFYIGQVAVLLFKSG   89 (89)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCSCCEEEEESSCCCCCCEEEEEEEEEEETTEEEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhcccCCCCEEEEecCeeEEEEEcCCcEEEEEECCEEEEEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999996

>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-42  Score=213.43  Aligned_cols=77  Identities=25%  Similarity=0.611  Sum_probs=76.1

Q ss_pred             CChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhccCCCceEEEEeCccceeEEeccCcEEEEEeCCEEEEEEeeC
Q psy1880           1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSMGPFSILLFKIQ   77 (81)
Q Consensus         1 M~~~mq~~~~~~~~~a~~~~~~~k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~vth~~~~~i~F~~~~~~illfk~~   77 (81)
                      ||++||++|+++|.+|++++++++|||++||++||++|||+||||||++|||+|||++++||||++|+++||||||+
T Consensus        21 M~~emq~~a~~~a~~al~~~~~ek~iA~~IK~~fDkkyG~~WhcIVG~~Fgs~vThe~~~fiyF~~g~~aiLlfKtg   97 (97)
T 4ds1_A           21 ITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGPLAFLVFKTA   97 (97)
T ss_dssp             ECHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSCEEEEEEEEEEEEEEECTTEEEEEEETTEEEEEEECC
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCccCCCCEEEEccCccEEEEEcCCcEEEEEECCEEEEEEecC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999986

>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...

Probab=100.00  E-value=1.1e-41  Score=212.45  Aligned_cols=77  Identities=42%  Similarity=0.768  Sum_probs=76.1

Q ss_pred             CChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhccCCCceEEEEeCccceeEEeccCcEEEEEeCCEEEEEEeeC
Q psy1880           1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSMGPFSILLFKIQ   77 (81)
Q Consensus         1 M~~~mq~~~~~~~~~a~~~~~~~k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~vth~~~~~i~F~~~~~~illfk~~   77 (81)
                      ||++||++|+++|.+|++++++++|||++||++||++|||+||||||++|||+|||++++||||++|+++||||||+
T Consensus        26 M~~emq~~a~~~a~~Al~k~~~ekdiA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe~~~fiyF~~g~~aiLlfKt~  102 (102)
T 1yo3_A           26 MTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYIGQVAILLFKSG  102 (102)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESCCCEEEEEEETTEEEEEEECC
T ss_pred             CCHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHhhhcCCCCEEEEccCeeEEEEEeCCcEEEEEECCEEEEEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999985

>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A

Probab=80.76  E-value=2.6  Score=21.99  Aligned_cols=34  Identities=18%  Similarity=0.283  Sum_probs=26.5

Q ss_pred             hHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhccC
Q psy1880           3 KPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQF   38 (81)
Q Consensus         3 ~~mq~~~~~~~~~a~~~~~~~k~iA~~iK~~lD~~y   38 (81)
                      +.++++|++..+.-+++.+  ++|-+.|+++|.++.
T Consensus        10 e~~KqEIL~E~RkElqK~K--~EIIeAi~~El~~~~   43 (45)
T 1use_A           10 QRVKQELLEEVKKELQKVK--EEIIEAFVQELRKRG   43 (45)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcC
Confidence            3577888888888777655  689999999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	81
d3e2ba1	87	d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fru	1e-20

>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 87

class: Alpha and beta proteins (a+b)
fold: DLC
superfamily: DLC
family: DLC
domain: Dynein light chain 1 (DLC1)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 75.5 bits (186), Expect = 1e-20
 Identities = 27/75 (36%), Positives = 46/75 (61%)

Query: 1  MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
          M++ MQ   +  A + L K N  K I+ +  +EF++++ P WHC+VG  +G+ V+ +   
Sbjct: 11 MSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRH 70

Query: 61 FMYLSMGPFSILLFK 75
          F+Y  +G  +ILLFK
Sbjct: 71 FIYFYLGQVAILLFK 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	81
d3e2ba1	87	Dynein light chain 1 (DLC1) {Fruit fly (Drosophila	100.0
d3proc1	80	Alpha-lytic protease prodomain {Lysobacter enzymog	83.48
d2bmoa1	150	Nitrobenzene dioxygenase alpha subunit, NBDO-alpha	81.53
d2nn6d2	89	Exosome complex exonuclease RRP46 {Human (Homo sap	80.38

>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: DLC
superfamily: DLC
family: DLC
domain: Dynein light chain 1 (DLC1)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=3.4e-42  Score=207.89  Aligned_cols=77  Identities=35%  Similarity=0.711  Sum_probs=76.3

Q ss_pred             CChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhccCCCceEEEEeCccceeEEeccCcEEEEEeCCEEEEEEeeC
Q psy1880           1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSMGPFSILLFKIQ   77 (81)
Q Consensus         1 M~~~mq~~~~~~~~~a~~~~~~~k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~vth~~~~~i~F~~~~~~illfk~~   77 (81)
                      ||++||++|+++|.+|+++|++++|+|++||++||++|||+||||||++|||+|||++++||||++|+++|||||||
T Consensus        11 M~~em~~~a~~~~~~al~~~~~~~diA~~IK~~~D~kyg~~WhcIVG~~Fgs~vthe~~~~i~F~~g~~~~Ll~Ktg   87 (87)
T d3e2ba1          11 MSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG   87 (87)
T ss_dssp             ECHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCSCEEEEEESSCEEEEEEETTEEEEEEETTEEEEEEECC
T ss_pred             CCHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhhCCccEEEECCCeeEEEEecCCcEEEEEECCEEEEEEecC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999996

>d3proc1 d.52.1.1 (C:6-85) Alpha-lytic protease prodomain {Lysobacter enzymogenes [TaxId: 69]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Alpha-lytic protease prodomain
family: Alpha-lytic protease prodomain
domain: Alpha-lytic protease prodomain
species: Lysobacter enzymogenes [TaxId: 69]

Probab=83.48  E-value=0.033  Score=31.30  Aligned_cols=19  Identities=32%  Similarity=0.574  Sum_probs=17.6

Q ss_pred             HHHHHHHHHhhccCCCceE
Q psy1880          25 AISQHFLREFNRQFKPNWH   43 (81)
Q Consensus        25 ~iA~~iK~~lD~~yg~~Wh   43 (81)
                      ++++.+++.|...||++|-
T Consensus        30 ~~~~~lr~~lg~~faGaW~   48 (80)
T d3proc1          30 TQAAAIEREFGAQFAGSWI   48 (80)
T ss_dssp             HHHHHHHHHHGGGEEEEEE
T ss_pred             HHHHHHHHHhhhhcceeee
Confidence            6889999999999999995

>d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Nitrobenzene dioxygenase alpha subunit, NBDO-alpha
species: Comamonas sp. JS765 [TaxId: 58226]

Probab=81.53  E-value=2.6  Score=25.10  Aligned_cols=48  Identities=19%  Similarity=0.413  Sum_probs=35.2

Q ss_pred             HHHHHHhhccCCCceEEEEeCccceeEEeccCcEEEEEeCCEEEEEEeeCCC
Q psy1880          28 QHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSMGPFSILLFKIQDE   79 (81)
Q Consensus        28 ~~iK~~lD~~yg~~WhciVG~~Fgs~vth~~~~~i~F~~~~~~illfk~~~~   79 (81)
                      +...+++++-|.+.||+|.=.+   .+. +++.|+-+.+++..++|+|..+.
T Consensus        21 ~~f~~E~~~if~~~W~~v~~~~---elp-~~Gd~~~~~i~~~~~vv~R~~dg   68 (150)
T d2bmoa1          21 ELFQHELKTIFARNWLFLTHDS---LIP-SPGDYVKAKMGVDEVIVSRQNDG   68 (150)
T ss_dssp             HHHHHHHHHTTTTSCEEEEEGG---GSC-STTEEEEEEETTEEEEEEECTTS
T ss_pred             HHHHHHHHHHHHcCCeEeehHH---HcC-CCcceeeeeecCceeEEEecCCC
Confidence            4567788888999999987431   111 25667777899999999998653

>d2nn6d2 d.101.1.1 (D:147-235) Exosome complex exonuclease RRP46 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ribonuclease PH domain 2-like
superfamily: Ribonuclease PH domain 2-like
family: Ribonuclease PH domain 2-like
domain: Exosome complex exonuclease RRP46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.38  E-value=1.8  Score=22.95  Aligned_cols=34  Identities=9%  Similarity=0.167  Sum_probs=27.3

Q ss_pred             CChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhccCCC
Q psy1880           1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKP   40 (81)
Q Consensus         1 M~~~mq~~~~~~~~~a~~~~~~~k~iA~~iK~~lD~~yg~   40 (81)
                      |+++.-.++++.|+++..      +|.+.+|+.+.++++.
T Consensus        55 ~s~~~~~~~l~~a~~~~~------~I~~~~r~~l~k~~~k   88 (89)
T d2nn6d2          55 YSDTELQQCLAAAQAASQ------HVFRFYRESLQRRYSK   88 (89)
T ss_dssp             CCHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHTCC
T ss_pred             cCHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcC
Confidence            567777888888888876      6888888888888775