Psyllid ID: psy19
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 494 | 2.2.26 [Sep-21-2011] | |||||||
| Q2T9W2 | 506 | THUMP domain-containing p | yes | N/A | 0.931 | 0.909 | 0.326 | 7e-70 | |
| Q9BV44 | 507 | THUMP domain-containing p | yes | N/A | 0.904 | 0.881 | 0.323 | 2e-67 | |
| P97770 | 505 | THUMP domain-containing p | yes | N/A | 0.892 | 0.873 | 0.312 | 2e-67 | |
| Q9BTF0 | 503 | THUMP domain-containing p | no | N/A | 0.532 | 0.522 | 0.282 | 2e-20 | |
| Q9CZB3 | 528 | THUMP domain-containing p | no | N/A | 0.599 | 0.560 | 0.250 | 5e-20 | |
| Q57880 | 381 | tRNA (guanine(6)-N2)-meth | yes | N/A | 0.495 | 0.643 | 0.259 | 6e-10 | |
| O28105 | 392 | tRNA (guanine(6)-N2)-meth | yes | N/A | 0.226 | 0.285 | 0.325 | 1e-08 | |
| P50840 | 385 | Putative RNA methyltransf | yes | N/A | 0.204 | 0.262 | 0.318 | 5e-06 | |
| A0L8B5 | 722 | Ribosomal RNA large subun | yes | N/A | 0.147 | 0.101 | 0.347 | 5e-06 | |
| O26820 | 336 | tRNA (guanine(10)-N2)-dim | yes | N/A | 0.246 | 0.363 | 0.343 | 7e-06 |
| >sp|Q2T9W2|THUM3_BOVIN THUMP domain-containing protein 3 OS=Bos taurus GN=THUMPD3 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 265 bits (676), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 163/499 (32%), Positives = 262/499 (52%), Gaps = 39/499 (7%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S+ Q+TI ATV TGFE +E +EK G + K G+++F+I + + +V LR
Sbjct: 32 SESEHLQVTIGATVPTGFEQTAADEVREKLGSSCKISKDRGKIYFDITVDSLAQVHCLRS 91
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIW 129
+DN+ ++ F+++ F K T+E+ LKD + K + W ++IW
Sbjct: 92 VDNLFVVVQEFKDYQF--KETKEEV------------LKDFEELAGK---LPWSDPLKIW 134
Query: 130 KQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQN 189
K T + + N N + + R + ++K+ E V++ QI +N
Sbjct: 135 KINTCFKKKKT-KRRKLNP-NSSKQKIDNGRGDTTVEKDVKKELTNSVSDSQISDY-YEN 191
Query: 190 QELKEI------DINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFG 242
+KE D + C + ++ + + +LKFRVTCNR G KH +S E+ R FG
Sbjct: 192 PAIKEQVSTLIGDGLTSCKDETEENSKEEADPEVLKFRVTCNRAGEKHCFSSNEAARDFG 251
Query: 243 GKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYN 302
G + D + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI F TTL+ T+AY
Sbjct: 252 GAVQDYFKWKADMTNFDVEVLLNIHDNEVVVGIALTEESLHRRNITHFGPTTLRSTLAYG 311
Query: 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN---- 358
M+RL +P P D+ +DPMCG G IP+E + + + + + GD N L + AN + +
Sbjct: 312 MLRLCAPQPTDIIVDPMCGTGAIPIEGATEWSNCYHIAGD-NNPLAVNRAANNISSLLTK 370
Query: 359 ----SGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIE 414
G L L + + ++ L + VD IVTD+PFGKR+GSK N+ LY L E
Sbjct: 371 IQVKEGKLPLGLPIDTIQWDICNLPLRTGSVDIIVTDMPFGKRMGSKKRNWNLYPACLRE 430
Query: 415 IGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLF 474
+ ++ RP GRA+LLT D+K +AL LW+ + +N+ G+ + V++L RT F
Sbjct: 431 MSRVCRPGTGRAVLLTQDKKCFAKALSGMGHLWRKVHTVWVNIGGLHAAVYLLKRTPQSF 490
Query: 475 DYAIHGLKEKHKGKPFPPR 493
+H +E + P R
Sbjct: 491 ---VHPSEEDGERCPCTQR 506
|
Bos taurus (taxid: 9913) |
| >sp|Q9BV44|THUM3_HUMAN THUMP domain-containing protein 3 OS=Homo sapiens GN=THUMPD3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 257 bits (656), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 160/494 (32%), Positives = 260/494 (52%), Gaps = 47/494 (9%)
Query: 4 HKLVSTAQSD-----EKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDL 58
K V +SD E +TI ATV TGFE +E +EK G + + G+++F I +
Sbjct: 20 QKSVQVTESDLGSESELLVTIGATVPTGFEQTAADEVREKLGSSCKISRDRGKIYFVISV 79
Query: 59 KDIEKVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVL 118
+ + +V LR +DN+ ++ F+++ F K T+E+ +LKD +D+A
Sbjct: 80 ESLAQVHCLRSVDNLFVVVQEFQDYQF--KQTKEE--------VLKD-FEDLAG------ 122
Query: 119 EIDWKKYMEIWKQITNYNGVLYPS--IEQFNKYNDILRHKKSIRNEINIKKE-SSCETEP 175
++ W +++WK ++ I Q + I ++ ++ N+KKE +S +
Sbjct: 123 KLPWSNPLKVWKINASFKKKKAKRKKINQNSSKEKINNGQEVKIDQRNVKKEFTSHALDS 182
Query: 176 QVNNVQIEKGDLQNQELKEIDINSM-------CSSQNQKTNFTNPEENLLKFRVTCNRVG 228
+ + +N +KE D++++ C + +++ E +LKFRVTCNR G
Sbjct: 183 HILDY------YENPAIKE-DVSTLIGDDLASCKDETDESSKEETEPQVLKFRVTCNRAG 235
Query: 229 -KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI 287
KH TS E+ R FGG + D + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI
Sbjct: 236 EKHCFTSNEAARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIALTEESLHRRNI 295
Query: 288 VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKL 347
F TTL+ T+AY M+RL P+P D+ +DPMCG G IP+E + + F + GD N
Sbjct: 296 THFGPTTLRSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWSDCFHIAGDNNPLA 355
Query: 348 VLKTQANVLH-------NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGS 400
V + N+ G + L + + ++ L + VD IVTDLPFGKR+GS
Sbjct: 356 VNRAANNIASLLTKSQIKEGKPSWGLPIDAVQWDICNLPLRTGSVDIIVTDLPFGKRMGS 415
Query: 401 KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGM 460
K N+ LY L E+ ++ P GRA+LLT D K +AL +W+ + +N+ G+
Sbjct: 416 KKRNWNLYPACLREMSRVCTPTTGRAVLLTQDTKCFTKALSGMRHVWRKVDTVWVNVGGL 475
Query: 461 KSFVFILNRTADLF 474
++ V++L RT F
Sbjct: 476 RAAVYVLIRTPQAF 489
|
Homo sapiens (taxid: 9606) |
| >sp|P97770|THUM3_MOUSE THUMP domain-containing protein 3 OS=Mus musculus GN=Thumpd3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (655), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 151/483 (31%), Positives = 244/483 (50%), Gaps = 42/483 (8%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S+ Q+TI ATV TGFE E +EK + K G+++F+I ++ + +V LR
Sbjct: 33 SESEHLQVTIGATVPTGFEQTAAGEVREKLKSACRISKDRGKIYFDIAVESLAQVHCLRS 92
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIW 129
+DN+ ++ F+++ F D ++ L+D + K + W +++W
Sbjct: 93 VDNLFVVVQEFKDYQFK--------------DTKEEVLRDFEELAGK---LPWSDPLKVW 135
Query: 130 KQITNYNGVLYPSI---EQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGD 186
+ T + + K + KK +S ++ + +
Sbjct: 136 QINTTFKKKKAKRRKANQSAGKEKADCGQGDKADEKDGKKKHASSTSDSHILDY------ 189
Query: 187 LQNQELKE------IDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESER 239
+N +KE D+ S C + ++ E + KFRVTCNR G KH TS E+ R
Sbjct: 190 YENPAIKEEISTLVGDVLSSCKDETGQSLREETEPQVQKFRVTCNRAGEKHCFTSNEAAR 249
Query: 240 AFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTI 299
FGG + + + W D+ ++D+++ L I NE V + +T+ SLHRRNI F TTL+ T+
Sbjct: 250 DFGGAIQEYFKWKADMTNFDVEVLLNIHDNEVIVAIALTEESLHRRNITHFGPTTLRSTL 309
Query: 300 AYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN- 358
AY M+RL P P DV +DPMCG G IP+E + + H + + GD N L + AN + +
Sbjct: 310 AYGMLRLCEPKPTDVIVDPMCGTGAIPIEGATEWSHCYHIAGD-NNPLAVNRAANNISSL 368
Query: 359 -------SGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLF 411
G L + + ++ L + A VD IVTD+PFGKR+GSK N+ LY
Sbjct: 369 LTKSQIKDGKTTWGLPIDAVQWDICNLPLRTASVDIIVTDMPFGKRMGSKKRNWNLYPAC 428
Query: 412 LIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTA 471
L E+ ++ RP GRA+LLT D+K +AL +W+ + +N+ G+ + V++L RTA
Sbjct: 429 LREMSRVCRPGTGRAVLLTQDKKCFTKALSGMGHVWRKVHVVWVNIGGLHAAVYLLKRTA 488
Query: 472 DLF 474
F
Sbjct: 489 QAF 491
|
Mus musculus (taxid: 10090) |
| >sp|Q9BTF0|THUM2_HUMAN THUMP domain-containing protein 2 OS=Homo sapiens GN=THUMPD2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 136/297 (45%), Gaps = 34/297 (11%)
Query: 150 NDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDL-------QNQELKEIDINSMCS 202
N+I+ K I I++ C+ E Q+ +E+ D Q +E + DI
Sbjct: 140 NEIIAKKLKIEQMQKIEENRDCQLEKQIKEETLEQRDFTTKSEKFQEEEFQN-DIEKAID 198
Query: 203 SQNQKTNFTNPEENLLKFRVTCNRVGK--HTVTSMESERAFGGKLNDTYFWLVDLDDYDI 260
+ NQ N L FRV+C G T+ E + G + + W DL + +
Sbjct: 199 THNQ---------NDLTFRVSCRCSGTIGKAFTAQEVGKVIGIAIMKHFGWKADLRNPQL 249
Query: 261 DINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
+I + + + VG+PV + SL R ++ L+ TIA+ M LA G LDPMC
Sbjct: 250 EIFIHLNDIYSVVGIPVFRVSLASRAYIK--TAGLRSTIAWAMASLADIKAGAFVLDPMC 307
Query: 321 GGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380
G GTI +E + +P ++V D+++ +L T N L +G E K+ L +V +L
Sbjct: 308 GLGTILLEAAKEWPDVYYVGADVSDSQLLGTWDN-LKAAG---LEDKIELLKISVIELPL 363
Query: 381 KPACVDGIVTDLPFGK--RVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKH 435
VD I++D+PFGK ++G + L ++ +G G +LL S+ H
Sbjct: 364 PSESVDIIISDIPFGKKFKLGKDIKSILQEMERVLHVG-------GTIVLLLSEDHH 413
|
Homo sapiens (taxid: 9606) |
| >sp|Q9CZB3|THUM2_MOUSE THUMP domain-containing protein 2 OS=Mus musculus GN=Thumpd2 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 155/331 (46%), Gaps = 35/331 (10%)
Query: 122 WKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQ 181
W + + +WK++ ++ P E+ ++ + +K+ NE I K+ E + +V
Sbjct: 105 WLEAISLWKKLLEHD----PKREKVSQRDANPLKRKAGENETIIAKKLKVEEKQEVAK-- 158
Query: 182 IEKGDLQNQEL-------------KEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG 228
+ G+ Q +L E+ + + S+ + + + E+ L FRV+C G
Sbjct: 159 -DHGESQEDKLLQGSPEQGEAVTRTELQDHRLNSTTEKAADAQDQED--LTFRVSCRCTG 215
Query: 229 --KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRN 286
+ +T E+ R G L + W DL + +I+I + + + VG+P+ + L R
Sbjct: 216 NVRKVITGQEAGRVIGLALMRQFGWKADLRNPNIEIFMHLSDAYSVVGIPLLRMPLASRT 275
Query: 287 IVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEK 346
++ L+ TIA+ M +A G + LDPMCG GTI VE + +P F++ D+++
Sbjct: 276 YIQ--TAGLRSTIAWAMASIAEIKAGALVLDPMCGLGTILVEAAEEWPDVFYMGADMSDA 333
Query: 347 LVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFL 406
+L N L +G +R + L +V L D I++D+PFGK+ +
Sbjct: 334 QLLGACDN-LKAAGLTDR---IELLKSSVTDLPLPSQSTDVIISDIPFGKKFKLGKD--- 386
Query: 407 LYRLFLIEIGKIVRPQIGRAILLTSD-RKHL 436
+ L E+ +++R +LL+ D +HL
Sbjct: 387 -IKSILQEMERVLRVGGAMVLLLSEDHHRHL 416
|
Mus musculus (taxid: 10090) |
| >sp|Q57880|TRM14_METJA tRNA (guanine(6)-N2)-methyltransferase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=trm14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 129/289 (44%), Gaps = 44/289 (15%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTY------FWLVDLDDYDIDINLQIRYNEAYV 273
F + R G+H TS++ R G + +Y V+LD+ D+ + +++ ++E V
Sbjct: 94 FAIRPLRAGEHNFTSIDIGRVAGEAVIKSYQRDKNIRLKVNLDEPDVIVRVEVIFDELIV 153
Query: 274 GLPVT-QTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
G+ T +L +R FN L TIA ++V L+ ++ LDPMCG GTIP+E +L
Sbjct: 154 GIDTTGDIALDKRGYRVFNHPAHLNATIASSLVYLSDWKDDEMLLDPMCGSGTIPIEGAL 213
Query: 332 SY----PHTF------FVCGDI-NEKLVLKTQANVLHNSG-----NLNRE---------- 365
P F F DI +L+ K + ++ N L++
Sbjct: 214 MKRNIPPGKFRENKYGFKFIDIFGYELLDKIKKEIVENKNIYKIIGLDKNQKYLDGAKDN 273
Query: 366 ------LKVSPLVC-NVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKI 418
L +C + +L K D I+ + P+G R+GSK + LY FL +I
Sbjct: 274 AKNAEVLDTIEFICGDATKLHEKFNESDVIIANPPYGIRIGSKRSVKKLYDEFLSSAKEI 333
Query: 419 VRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFIL 467
+ R I++T++ K A I ++ +++ + G+ + VF L
Sbjct: 334 MHGS-SRLIVITAEDKMFKDA--IAKNNFEVKEEFNVMFGGLMTRVFYL 379
|
S-adenosyl-L-methionine-dependent methyltransferase that catalyzes the methylation of the guanosine nucleotide at position 6 (m2G6) in tRNA(Cys). Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O28105|TRM14_ARCFU tRNA (guanine(6)-N2)-methyltransferase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=trm14 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 8/120 (6%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTYF------WLVDLDDYDIDINLQIRYNEAYV 273
F + RVG+H TSM+ R G + D++ V+L+ D+ I +++ +E +V
Sbjct: 120 FAIRSLRVGEHDFTSMDIARVAGQAVIDSFMESYGERLKVNLNQPDVIIRVELVDSELFV 179
Query: 274 GLPVT-QTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
G+ T ++H+R +N L IA M+R+A + +DPMCG GTIP+E +L
Sbjct: 180 GVDTTGDDAMHKRWWRVYNHPAHLNAAIACGMLRIADWKVDESLIDPMCGSGTIPIEAAL 239
|
S-adenosyl-L-methionine-dependent methyltransferase that catalyzes the methylation of the guanosine nucleotide at position 6 (m2G6) in tRNA(Cys). Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|P50840|YPSC_BACSU Putative RNA methyltransferase YpsC OS=Bacillus subtilis (strain 168) GN=ypsC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 9/110 (8%)
Query: 224 CNRVGKHTVTSMESERAFGGKLNDTYFWLVDLD-DYDIDINLQIRYNEAYVGLPVTQTSL 282
C R+ K + +E + GK ND W+ + +Y ++I+L ++A + L + T L
Sbjct: 109 CQRIVKKAI--VEKLKLQSGKAND---WIEETGAEYKVEISL--LKDQALITLDSSGTGL 161
Query: 283 HRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
H+R V+ +K T+A +V+L + P F+DP CG GTI +E +L
Sbjct: 162 HKRGYRVDQGGAPIKETLAAALVQLTNWTPDRPFVDPFCGSGTIAIEAAL 211
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A0L8B5|RLMKL_MAGSM Ribosomal RNA large subunit methyltransferase K/L OS=Magnetococcus sp. (strain MC-1) GN=rlmL PE=3 SV=1 | Back alignment and function description |
|---|
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 22/95 (23%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMV---------RLAS 308
D+ INL IR NE VG+ ++ LHRR + LK +A ++ RL +
Sbjct: 136 DLRINLGIRGNEGRVGIDLSGEGLHRRGYRLRTGDAPLKENLAAALLYFAGWEEQARLGA 195
Query: 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDI 343
P F+DPMCG GT+P+E ++ + GDI
Sbjct: 196 P-----FVDPMCGSGTLPIEAAM-------MAGDI 218
|
Specifically methylates the guanosine in position 2445 (m2G2445) of 23S rRNA. Magnetococcus sp. (strain MC-1) (taxid: 156889) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 3 |
| >sp|O26820|TMG10_METTH tRNA (guanine(10)-N2)-dimethyltransferase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=trmG10 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 63/137 (45%), Gaps = 15/137 (10%)
Query: 279 QTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFF 338
Q H+R F ++ P +A MV L+ GD LDP CG G I +E L
Sbjct: 157 QARPHKRPF--FYPGSMSPKLARCMVNLSGVKAGDRILDPFCGTGGILIEAGLM--GVRV 212
Query: 339 VCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFG--- 395
V DI+ ++V T+ N+ H G + E+ + + R L VD IVTD P+G
Sbjct: 213 VGADIDWRMVEGTRENLQHY-GITDFEV----IRSDARDLRLDEK-VDAIVTDPPYGISA 266
Query: 396 KRVGSKSNNFLLYRLFL 412
G KS LYR FL
Sbjct: 267 STAGEKSEK--LYREFL 281
|
Catalyzes the adenosylmethionine-dependent methylation of the exocyclic amino group (N(2)) of guanosine at position 10 of various tRNAs. Acts via a two-step process that leads to the formation of either N(2)-monomethyl (m(2)G) or N(2)-dimethylguanosine (m(2)(2)G). Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 494 | ||||||
| 340710747 | 441 | PREDICTED: THUMP domain-containing prote | 0.838 | 0.938 | 0.353 | 2e-76 | |
| 350406156 | 441 | PREDICTED: THUMP domain-containing prote | 0.838 | 0.938 | 0.358 | 6e-76 | |
| 307183569 | 478 | THUMP domain-containing protein 3 [Campo | 0.844 | 0.872 | 0.364 | 7e-76 | |
| 242017902 | 967 | F-box/LRR-repeat protein, putative [Pedi | 0.892 | 0.456 | 0.347 | 3e-75 | |
| 383850804 | 442 | PREDICTED: THUMP domain-containing prote | 0.848 | 0.947 | 0.341 | 2e-74 | |
| 380014807 | 435 | PREDICTED: THUMP domain-containing prote | 0.840 | 0.954 | 0.363 | 4e-74 | |
| 213512589 | 519 | THUMP domain-containing protein 3 [Salmo | 0.921 | 0.876 | 0.319 | 1e-71 | |
| 313747477 | 490 | THUMP domain containing 3 [Xenopus (Silu | 0.914 | 0.922 | 0.339 | 2e-71 | |
| 327280382 | 507 | PREDICTED: THUMP domain-containing prote | 0.888 | 0.865 | 0.344 | 2e-71 | |
| 332026183 | 420 | THUMP domain-containing protein 3 [Acrom | 0.801 | 0.942 | 0.378 | 3e-71 |
| >gi|340710747|ref|XP_003393947.1| PREDICTED: THUMP domain-containing protein 3-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 166/469 (35%), Positives = 258/469 (55%), Gaps = 55/469 (11%)
Query: 2 DLHKLVSTAQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDI 61
+L KL + + + I T+ TGFE V+EC+EK K++ ++K G+++FN+
Sbjct: 8 NLRKLFIESLASDNVFIIATTIDTGFEWQAVDECKEKLDKNVKIVKERGKIYFNVYWSQF 67
Query: 62 EKVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEID 121
+V+E+R IDN+ +I+A F FS E D L KD + + ++
Sbjct: 68 AQVQEMRSIDNV-YIVADVRKFEFSGNSKEADL------QLFKDAVHN---------DMK 111
Query: 122 WKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQ 181
+K + WK IT + G +YP+ +++N + K C T V +
Sbjct: 112 LEKALNTWKSITGFRGKIYPTTDEYN---------------VAEKDRKLCNT--TVTPIT 154
Query: 182 IEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAF 241
+ KG + Q+ + E+ +L++RVTC R GKHT S E RA
Sbjct: 155 V-KGRKRGQDPSD-----------------TKEDEILRYRVTCERTGKHTFGSAEVARAI 196
Query: 242 GGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAY 301
GG+L D Y WLVDL Y +++ ++ NE L +T S H RNI+ F TTL+ T++Y
Sbjct: 197 GGELQDKYLWLVDLSTYYLEVVCKVIDNELITQLRITHESKHHRNIICFGPTTLRATVSY 256
Query: 302 NMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGN 361
N++RLA P PGD+ +DPMCG G+IP+E +L Y ++ + GD + K V T++N+ +S
Sbjct: 257 NLLRLAHPNPGDIIIDPMCGSGSIPIEAALVYSQSYIIGGDNHPKAVHNTKSNIEASSS- 315
Query: 362 LNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRP 421
+ K+ L NV QL FK + VD IVTD+PFGKR G +N +LY+ FLIE+G+I++P
Sbjct: 316 ---KCKIDLLHWNVSQLPFKDSFVDIIVTDMPFGKRSGRMIDNRILYKQFLIELGRIMKP 372
Query: 422 QIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRT 470
GR++LLT DR+ L AL L+ K + +N+ G+++ V++L RT
Sbjct: 373 LKGRSVLLTYDRRSLSMALQAAGDLFYVTKTLSVNIGGLQAAVYVLKRT 421
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350406156|ref|XP_003487676.1| PREDICTED: THUMP domain-containing protein 3-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 291 bits (744), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 168/469 (35%), Positives = 256/469 (54%), Gaps = 55/469 (11%)
Query: 2 DLHKLVSTAQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDI 61
+L KL + ++ I TV TGFE V+EC+EK K++ ++K G+++FN+
Sbjct: 8 NLRKLFIESLENDNVFIIATTVDTGFEWQAVDECKEKLDKNVKVVKERGKIYFNVYWSQF 67
Query: 62 EKVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEID 121
+V+E+R IDN+ +I+A F FS E D L KD + + ++
Sbjct: 68 AQVQEMRSIDNV-YIVADVRKFEFSGNSKEADL------QLFKDAVHN---------DMK 111
Query: 122 WKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQ 181
+K + WK IT + G +YP+ +++N I K C V +
Sbjct: 112 LEKALNAWKSITGFQGKIYPTTDEYN---------------IAEKDRKLCNI--TVTPIT 154
Query: 182 IEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAF 241
+ KG + Q+ + E+ +L++RVTC R GKHT S E RA
Sbjct: 155 V-KGRKRGQDPSD-----------------TKEDEILRYRVTCERTGKHTFESAEVARAI 196
Query: 242 GGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAY 301
GG+L D Y WLVDL Y +++ ++ NE L +T S H RNI+ F TTL+ T+ Y
Sbjct: 197 GGELQDKYLWLVDLSTYYLEVVCKVIDNELITQLRITHESKHHRNIMCFGPTTLRATVCY 256
Query: 302 NMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGN 361
N++RLA P PGD+ +DPMCG G+IP+E +L Y ++ + GD + K V T++N+ +S
Sbjct: 257 NLLRLAHPNPGDIIIDPMCGSGSIPIEAALVYSQSYIIGGDNHPKAVHNTKSNIEASSS- 315
Query: 362 LNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRP 421
E K+ L NV QL FK + VD IVTD+PFGKR G +N +LY+ FLIE+G+I++P
Sbjct: 316 ---ECKIDLLHWNVSQLPFKDSFVDIIVTDMPFGKRSGRMMDNRILYKQFLIELGRIMKP 372
Query: 422 QIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRT 470
GR++LLT DR+ L AL L+ K + +N+ G+++ V++L RT
Sbjct: 373 LRGRSVLLTYDRRSLSMALQAAGDLFYVTKTLGVNIGGLQAAVYVLKRT 421
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307183569|gb|EFN70311.1| THUMP domain-containing protein 3 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 291 bits (744), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 166/455 (36%), Positives = 260/455 (57%), Gaps = 38/455 (8%)
Query: 19 IEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFIIA 78
I TV TGFE ++EC+EK GKD+ ++K GR++FNI+ KV+++R IDN+ FI+
Sbjct: 25 IGTTVDTGFEWEAIDECKEKLGKDVQVVKQRGRIYFNINWDQFAKVQQMRSIDNV-FIVV 83
Query: 79 TFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKV---LEIDWKKYMEIWKQITNY 135
F+N DK D+ +I N + L+ W+K ++ WK T +
Sbjct: 84 DIGRLSFTN-----------------DKETDLKSIYNYIVSNLDKRWEKTLDAWKCATRF 126
Query: 136 NGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQNQELKEI 195
G LYP++E++ + K+ EI+ +E E + N+ +EK +++N+ K
Sbjct: 127 MGKLYPTVEEYITAKEQALVTKAETLEIH-DEEKGGEPDLLEQNI-LEKKEIENKGKKRG 184
Query: 196 DINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDL 255
S + E ++L++RVTC R GKH S + R G + D Y W+V+L
Sbjct: 185 QDPS-----------ESKESDILRYRVTCERTGKHVFESKDIARITGEVVQDKYHWIVNL 233
Query: 256 DDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVF 315
Y +++ ++ + L VT S HRRNI F TTL+ TI YN++RLA+P PGD+
Sbjct: 234 TKYHLEVICKLMDDLLITHLRVTHESKHRRNIASFGPTTLRSTICYNLLRLANPKPGDII 293
Query: 316 LDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNV 375
+DPMCGGG+IPVE +L+YP ++ +CGD N + V +T++N+ ++ K+ +
Sbjct: 294 IDPMCGGGSIPVEATLAYPCSYVLCGDNNSRAVERTKSNMNASTAG----CKIDLIQWTA 349
Query: 376 RQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKH 435
+L FK + +D IVTD+PFGKR G+KS N LY+ FL+E+G+IV+ GR +LLT DR
Sbjct: 350 SKLPFKDSFIDIIVTDMPFGKRSGNKSYNKTLYKQFLLELGRIVKLSYGRLVLLTYDRYS 409
Query: 436 LIQALHITSALWKCRKQIKINMSGMKSFVFILNRT 470
+AL L+ K I +N+ G+++ V++LNRT
Sbjct: 410 FKEALQAAGDLFWVTKTIGVNIGGLQAVVYVLNRT 444
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242017902|ref|XP_002429423.1| F-box/LRR-repeat protein, putative [Pediculus humanus corporis] gi|212514349|gb|EEB16685.1| F-box/LRR-repeat protein, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 165/475 (34%), Positives = 266/475 (56%), Gaps = 34/475 (7%)
Query: 6 LVSTAQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVK 65
L+ +++ ++T EA+V TG E ++E EKFGK++ S GRVFFN + K
Sbjct: 415 LLELSKNHFTKLTFEASVTTGLEQTALDELFEKFGKNIKACFSRGRVFFNTKFDKYQSYK 474
Query: 66 ELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKY 125
LR +D + ++A F +N L+ K KD+ I+N V DW+K
Sbjct: 475 LLRSVDRV-NVLAGFTTVSLNND--------------LQLKSKDLDEIKNTVKVFDWEKV 519
Query: 126 MEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIE-- 183
+ IW++I ++G LYP+ +Q+ +++ N +I ++ + E N ++E
Sbjct: 520 IAIWQEIEGFDGNLYPTRKQY---------ERASSNNFSITEDQASEKSDDSENDEVEFK 570
Query: 184 --KGDLQNQEL-KEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESER 239
K + +L K +D S N + + +FRVTCNRVG KHT +S E+
Sbjct: 571 CEKVFFEKTQLEKALDSVLTLSDDENNITVNNNDNKIPRFRVTCNRVGEKHTFSSQEAAT 630
Query: 240 AFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTI 299
AFGG L D + W+VDL YDI+I L++ + Y G+ + + S H RNI F +TTL+ TI
Sbjct: 631 AFGGLLQDKFNWIVDLSHYDIEIILEVNNEDVYAGVALNKKSNHFRNITFFGLTTLRATI 690
Query: 300 AYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNS 359
YN++RL + PGD+ +DPMCG G IP+E +LS+P+ +F+ GDI++K +KT+ N+
Sbjct: 691 CYNLLRLCNVKPGDIVVDPMCGCGAIPIEGTLSFPNAYFLGGDIHDKAAVKTRCNI---- 746
Query: 360 GNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIV 419
L + LK+ L + +L + +D V+D PFGKR G+K+NN L++ L ++ +++
Sbjct: 747 NALEKNLKIDNLKWDSTRLPLRTNSIDVFVSDFPFGKRCGTKANNKALFKNALNDLARVL 806
Query: 420 RPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLF 474
+ + GR ++LT+D+ A +T WK RK IN+ G++S F+L RT + F
Sbjct: 807 KKKSGRCVILTADKTSFNVAYQLTKTFWKLRKNFIINIGGIRSSCFVLERTEEEF 861
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383850804|ref|XP_003700964.1| PREDICTED: THUMP domain-containing protein 3-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 162/474 (34%), Positives = 254/474 (53%), Gaps = 55/474 (11%)
Query: 2 DLHKLVSTAQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDI 61
DL KL + +++ I TV TGFE ++EC+E K++ ++K G++F NI
Sbjct: 6 DLQKLFYESLNNDNVFMIAMTVDTGFEWQAIDECKEILDKNVKIIKERGKIFVNICWNQF 65
Query: 62 EKVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEID 121
+++E+R IDNI FI+A F F E D L+KD + + ++
Sbjct: 66 AQIQEMRSIDNI-FIVADVRKFEFVGTTKETDL------QLIKDSVNNGMKLE------- 111
Query: 122 WKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQ 181
K + WK +T + G +YP+ E++ + + + + + P V+
Sbjct: 112 --KCLNAWKSVTAFRGKIYPTSEEYT----LAQSNRKLEDRTIF---------PATQRVK 156
Query: 182 IEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAF 241
D N + E+ +L++RVTC R GKHT S + RA
Sbjct: 157 KRGQDPSNAK----------------------EDEILRYRVTCERTGKHTFESADVARAI 194
Query: 242 GGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAY 301
GG+L D Y WLVDL Y +++ ++ NE L VT S HRRNI F TTL+ TI Y
Sbjct: 195 GGELQDKYLWLVDLSAYYLEVVCKVTNNELVTQLRVTHESKHRRNITCFGPTTLRATICY 254
Query: 302 NMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGN 361
N++RL P PGDV +DPMCGGG+IP+E +L Y ++ + GD + K + +T++NV +
Sbjct: 255 NLLRLTHPNPGDVIIDPMCGGGSIPIEATLVYTQSYVLGGDNHPKAIARTKSNVDTSCT- 313
Query: 362 LNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRP 421
+ K+ + +V+QL K +CVD ++TD+PFGKR G +N +LY+ FLIE+G+I++P
Sbjct: 314 ---KCKIDLMHWSVQQLPLKDSCVDIVITDMPFGKRSGRMIDNRILYKQFLIELGRIMKP 370
Query: 422 QIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLFD 475
GRA LLT DR+ AL L++ K + +N+ G+++ V++L RT +D
Sbjct: 371 STGRAALLTYDRRSFNTALQSAGDLFRVTKMLGVNIGGLQAAVYVLKRTDTAYD 424
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380014807|ref|XP_003691408.1| PREDICTED: THUMP domain-containing protein 3-like, partial [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 171/470 (36%), Positives = 256/470 (54%), Gaps = 55/470 (11%)
Query: 1 MDLHKLVSTAQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKD 60
M+L KL + ++ + TV TGFE ++EC+EK GK++ ++K G+++FNI
Sbjct: 8 MNLQKLFLESSLNDNVFMVATTVDTGFEWQAIDECKEKLGKNVTIIKERGKIYFNIYWNQ 67
Query: 61 IEKVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEI 120
+++E+R IDN +FI+A F FS G E DL +L A N LE
Sbjct: 68 FVQIQEMRSIDN-MFIVADVSKFEFS--------GNSKEMDL---QLFKSAVHNNMKLE- 114
Query: 121 DWKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNV 180
K ++IWK +T + G +YP+I+++N LR K C T +
Sbjct: 115 ---KALDIWKHVTGFQGKIYPTIDEYN-----LRKKDY----------KLCNT---IVAP 153
Query: 181 QIEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERA 240
I KG + Q + E+ +L++RVTC R GKH S + R
Sbjct: 154 TIPKGKKRGQNPSDAK-----------------EDEILRYRVTCERTGKHIFESSDVARI 196
Query: 241 FGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIA 300
GG+L D Y WLVDL Y ++I ++ NE L VT S H RNI+ F TTL+ T+
Sbjct: 197 IGGELQDKYLWLVDLSAYYLEIVCKLINNELVTQLRVTHESKHHRNIMCFGPTTLRATVC 256
Query: 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSG 360
YN++RLA P PGD+ +DPMCG G+IPVE +L Y ++ + GD + K V +T++N+ +S
Sbjct: 257 YNLLRLAHPNPGDIIIDPMCGSGSIPVEATLVYFKSYVIGGDNHPKAVCRTKSNIEASSS 316
Query: 361 NLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVR 420
+ K+ L NV QL FK + +D VTD+PFGKR G +N +LY+ FLIE+G+I++
Sbjct: 317 ----KCKIDLLHWNVSQLPFKNSFIDIAVTDMPFGKRSGRIMDNRILYKQFLIELGRIIK 372
Query: 421 PQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRT 470
GR +LLT DR+ AL L+ K + +N+ G+++ V++L RT
Sbjct: 373 LLTGRIVLLTYDRRSFNMALQAAGDLFYVTKTLGVNIGGLQAAVYVLKRT 422
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|213512589|ref|NP_001135122.1| THUMP domain-containing protein 3 [Salmo salar] gi|209156010|gb|ACI34237.1| THUMP domain-containing protein 3 [Salmo salar] | Back alignment and taxonomy information |
|---|
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 255/488 (52%), Gaps = 33/488 (6%)
Query: 17 ITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFI 76
+TI ATV TGFE+ EE QEK G D + K GR++F I + +V LR +DN+ +
Sbjct: 36 VTIGATVPTGFENTAAEEVQEKIGADATISKDRGRIYFQITTDKLSQVHHLRSVDNLFVV 95
Query: 77 IATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYN 136
+ ++N+ F D ++ L+D+ + +K + W +++WK T+
Sbjct: 96 VEEYDNYQFK--------------DSKEETLEDLQKLASK---LPWTNALKVWKLNTSLK 138
Query: 137 GVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQNQ------ 190
P + R ++ R+ K+ + +IEK L+ Q
Sbjct: 139 KKRGPH-RRPQGPKGKGRRGRNFRDRGKANKDDVETDTMETVTAEIEKLQLEPQAPTTGQ 197
Query: 191 ---ELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFGGKLN 246
E D+ + + Q+ P +LKFRVTC+R G KH+ +S E+ R FGG +
Sbjct: 198 GVGEAGSPDLENSPLGEQQEVEGQEPVPKVLKFRVTCSRAGDKHSFSSNEAARDFGGAVQ 257
Query: 247 DTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRL 306
D + W D+ +DI++ L I E +G+ +T+ SLHRRNI F TTL+ T+ Y M+RL
Sbjct: 258 DFFLWKADMTKFDIEVLLNIHNVEVVIGIALTEESLHRRNITHFGPTTLRSTLCYGMLRL 317
Query: 307 ASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH-NSGNLNRE 365
+ P DV LDPMCG G IP+E ++ + F++ GD N+ V +T N+ H L++
Sbjct: 318 SKPQASDVILDPMCGTGAIPLEGAIEWQQAFYLAGDNNDMAVSRTVNNICHIQKKRLDKS 377
Query: 366 ----LKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRP 421
L + + ++ L + + VD I+TD+PFGKR+GS+ NN+ LY L E+ ++ RP
Sbjct: 378 STPGLPIDTVQWDLCHLPMRTSSVDIIITDMPFGKRMGSRKNNWDLYPPCLREMARVSRP 437
Query: 422 QIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLFDYAIHGL 481
G+A++LT D+K +A+ LW+ + +N+ G+ + VF+L RTA +F +
Sbjct: 438 GSGKAVILTQDKKCFQKAISRMGGLWRKHHTVWVNVGGLHAGVFLLKRTAGIFGQTPEDV 497
Query: 482 KEKHKGKP 489
+E + +P
Sbjct: 498 REPLEEQP 505
|
Source: Salmo salar Species: Salmo salar Genus: Salmo Family: Salmonidae Order: Salmoniformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
| >gi|313747477|ref|NP_001186418.1| THUMP domain containing 3 [Xenopus (Silurana) tropicalis] | Back alignment and taxonomy information |
|---|
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 166/489 (33%), Positives = 256/489 (52%), Gaps = 37/489 (7%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
A ++ +TI ATV TGFE E +EK G + K G+++F+I + +V LR
Sbjct: 27 ANLEDAHVTIGATVPTGFEFTAAAEVEEKLGCPCKISKDRGKIYFDIKKDRLAQVHRLRS 86
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIW 129
+DN+ I+ F +F F K T+ED+ LKD+ + K + W+ + W
Sbjct: 87 VDNLFVIVKEFSDFPF--KETKEDA------------LKDLGDLAEK---LPWESALSAW 129
Query: 130 KQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQN 189
+ N + + Y + + N+I+ + + S +T P + +G
Sbjct: 130 EL---NNSLKKRKKRKKPGYPGKEKKQPVTVNKISEEMQDSPKTLPS----SVAEGQGTQ 182
Query: 190 QELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFGGKLNDT 248
KE D ++ T N+LKFRVTCNR G KH+ TS ++ R FGG + +
Sbjct: 183 NPDKEADTPPDSEGKDNGTA----SGNVLKFRVTCNRAGDKHSFTSNDAARDFGGAVQEH 238
Query: 249 YFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLAS 308
+ W D+ ++D+++ L I YNE VG+ +T+ SLHRRNI F TTL+ T+AY M+RL
Sbjct: 239 FQWKADMTNFDVEVLLNISYNEMVVGIALTEESLHRRNITHFGPTTLRSTLAYGMLRLCD 298
Query: 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVL-----HNSG-NL 362
P DV +DPMCG G IP+E +P +FF+ GD N++ V +T +N+ H S +
Sbjct: 299 LQPSDVIIDPMCGTGAIPIEGVSEWPGSFFLAGDNNKQAVNRTGSNIQSLLRKHQSPESA 358
Query: 363 NRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQ 422
L++ + ++ L + VD IVTD+PFGKR+GSK N+ LY L E+ ++ R
Sbjct: 359 PSNLRIDAVHWDISSLPLRDGSVDVIVTDMPFGKRMGSKKKNWDLYPACLREMSRVCRAG 418
Query: 423 IGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLFDYAIHGLK 482
GRA+LLT DRK I+AL LW+ + +N+ G+ + V++L RT+ FD +
Sbjct: 419 TGRAVLLTHDRKCFIKALAKAGHLWRKVHTVWVNIGGLHAGVYLLKRTS--FDSTKETQR 476
Query: 483 EKHKGKPFP 491
E P P
Sbjct: 477 ESQLADPAP 485
|
Source: Xenopus (Silurana) tropicalis Species: Xenopus (Silurana) tropicalis Genus: Xenopus Family: Pipidae Order: Anura Class: Amphibia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|327280382|ref|XP_003224931.1| PREDICTED: THUMP domain-containing protein 3-like [Anolis carolinensis] | Back alignment and taxonomy information |
|---|
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 164/476 (34%), Positives = 258/476 (54%), Gaps = 37/476 (7%)
Query: 17 ITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFI 76
+TI ATV TGFE +E QEK G + K G+++F I + +V +LR +DN+ +
Sbjct: 40 VTIGATVPTGFEATAADEVQEKLGSKSRISKDRGKIYFEIPAIRLPQVHQLRSVDNLFVV 99
Query: 77 IATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYN 136
+ F+++ F K T+ED+ LKD L+D+A ++ W +E+WK TN
Sbjct: 100 VQEFKDYQF--KETKEDA--------LKD-LEDLAK------KLPWTDALEVWKLNTNLK 142
Query: 137 GVLYPSI---EQFNKYNDILRH----KKSIRNEINIKKESSCET-EPQVNNVQIEK---- 184
+Q N + + ++++ E++ ++S E E Q + EK
Sbjct: 143 KRKTRRKRGNQQGNSKKEKPKEDGCEQEAVGKEMDDPVQNSLEAAEIQDSECTDEKVPLD 202
Query: 185 GDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFGG 243
D Q+ +E+ N ++ + + LKFRVTCNR G KH+ S E+ R FGG
Sbjct: 203 EDEQSDPKEELASNDENKNELEDCKKCEMDSETLKFRVTCNRAGDKHSFKSNEAARDFGG 262
Query: 244 KLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNM 303
+ D + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI F TTL+ T+AY M
Sbjct: 263 AVQDFFQWKADMTNFDVEVLLNIHNNEVVVGIALTEESLHRRNITHFGPTTLRSTLAYGM 322
Query: 304 VRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQAN-------VL 356
+RL P P D+ +DPMCG G IP+E + +P+ + + GD N + V +T N +
Sbjct: 323 LRLCDPQPADIIIDPMCGTGAIPIEGAAEWPNCYHIAGDNNPQAVKRTANNISSLLKQIR 382
Query: 357 HNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIG 416
+++ + + + L + VD IVTD+PFGKR+GSK N+ LY L+E+G
Sbjct: 383 SKESSISAGKPIDSIQWDSCSLPLRTGSVDVIVTDMPFGKRIGSKKKNWDLYPSCLMEMG 442
Query: 417 KIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTAD 472
+I RP+ GRA+LLT DRK +AL LW+ I +N+ G+ + V++L RTA+
Sbjct: 443 RICRPKTGRAVLLTQDRKCFAKALSKMGHLWRKSHTIWVNVGGLHAAVYLLKRTAE 498
|
Source: Anolis carolinensis Species: Anolis carolinensis Genus: Anolis Family: Iguanidae Order: Squamata Class: Phylum: Chordata Superkingdom: Eukaryota |
| >gi|332026183|gb|EGI66325.1| THUMP domain-containing protein 3 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 164/433 (37%), Positives = 255/433 (58%), Gaps = 37/433 (8%)
Query: 3 LHKLVSTAQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIE 62
+ +L S + +++K TI TV TGFE ++EC+EK GKD+ +++ GR++FNID +
Sbjct: 7 VSQLFSESVANDKIFTIGVTVDTGFEWEAIDECKEKLGKDVRVIRQRGRIYFNIDWDEFP 66
Query: 63 KVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDW 122
KV+E+R ID+I FI+A N F+N ESDLL + ++ + N + W
Sbjct: 67 KVQEMRSIDHI-FIVADNGNLSFNNDK---------ESDLLHIRSYNLDILSNS--DKIW 114
Query: 123 KKYMEIWKQITNYNGVLYPSIEQF--NKYNDILRHKKSIRNEINIKKESSCETEPQVNNV 180
KK +E WK T++ G LYP+ E++ K D++ K + N +KE + V+ +
Sbjct: 115 KKTLEAWKCATSFKGKLYPTTEEYVEAKKEDLVA-KTEMLEMRNKEKEEKDPYDWNVSEM 173
Query: 181 QIEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERA 240
+ EKG + Q+ S++Q E ++LK+RVTC R GKH V S + R
Sbjct: 174 KEEKGKKRGQD----------PSKSQ-------ENDVLKYRVTCERNGKHAVESKDVARV 216
Query: 241 FGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIA 300
G L D + WLVDL Y ++I ++ ++ L VT S H RNIV F TTL+ TI
Sbjct: 217 IGEVLQDKFHWLVDLSMYHLEILCKLVNDQLITHLRVTHKSKHHRNIVNFGPTTLRSTIC 276
Query: 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSG 360
YN+++LA+P GD+ +DPMCGGG+IP+E +L++PH++ +CGD + + + +T++N+ ++
Sbjct: 277 YNLLKLANPKLGDIIVDPMCGGGSIPIEATLAFPHSYVLCGDNDSRAIDRTKSNMDASAI 336
Query: 361 NLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVR 420
K+ + +L FK + VD IVTD+PFGKR G+K N + Y+ FL+E G+IV+
Sbjct: 337 T----CKIDLVQWTASKLPFKDSFVDIIVTDMPFGKRSGNKFYNKIFYKKFLLEFGRIVK 392
Query: 421 PQIGRAILLTSDR 433
GR +LLT DR
Sbjct: 393 LN-GRIVLLTYDR 404
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 494 | ||||||
| ZFIN|ZDB-GENE-030131-9745 | 482 | thumpd3 "THUMP domain containi | 0.682 | 0.699 | 0.363 | 1.1e-66 | |
| MGI|MGI:1277973 | 505 | Thumpd3 "THUMP domain containi | 0.591 | 0.578 | 0.383 | 1.1e-64 | |
| UNIPROTKB|F1N027 | 506 | THUMPD3 "THUMP domain-containi | 0.931 | 0.909 | 0.322 | 2.3e-64 | |
| UNIPROTKB|Q2T9W2 | 506 | THUMPD3 "THUMP domain-containi | 0.931 | 0.909 | 0.322 | 2.9e-64 | |
| RGD|1560852 | 504 | Thumpd3 "THUMP domain containi | 0.647 | 0.634 | 0.356 | 3.7e-64 | |
| UNIPROTKB|F1P5S9 | 454 | THUMPD3 "Uncharacterized prote | 0.872 | 0.949 | 0.334 | 3.3e-63 | |
| UNIPROTKB|E2R6J3 | 508 | E2R6J3 "Uncharacterized protei | 0.917 | 0.891 | 0.315 | 4.2e-63 | |
| UNIPROTKB|Q9BV44 | 507 | THUMPD3 "THUMP domain-containi | 0.910 | 0.887 | 0.322 | 6.9e-63 | |
| UNIPROTKB|E2R3N7 | 503 | THUMPD3 "Uncharacterized prote | 0.919 | 0.902 | 0.312 | 2.3e-62 | |
| UNIPROTKB|F6XPR6 | 411 | F6XPR6 "Uncharacterized protei | 0.748 | 0.900 | 0.315 | 1.4e-48 |
| ZFIN|ZDB-GENE-030131-9745 thumpd3 "THUMP domain containing 3" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 546 (197.3 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
Identities = 130/358 (36%), Positives = 194/358 (54%)
Query: 148 KYNDILRHKKSIRNEINIKKESSCETE----PQVNNVQIEKGDLQNQELKEI-----DIN 198
K N+ +R KK R N K CE P +E+ L+N E E+ D++
Sbjct: 109 KLNNSIRKKKGRRKRPNPTKSDQCENVSAKCPDTVPSDLEEL-LENCETLEVTENQADVS 167
Query: 199 SMCSSQNQKTNFTNPEEN-----LLKFRVTCNRVG-KHTVTSMESERAFGGKLNDTYFWL 252
+ +++ + P++ LKFRVTC+R G KH TS ++ R FGG + + + W
Sbjct: 168 PNLENDSEEDKPSEPQDQDSELMPLKFRVTCSRAGDKHCFTSNDAARDFGGAVQEFFQWK 227
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPG 312
D+ +D+++ L I NE VG+ +T SLHRRNI F TTL+ T+AY M+RL P
Sbjct: 228 ADMTKFDVEVLLNIHNNEVVVGIALTVESLHRRNITHFGPTTLRSTLAYGMLRLCKPQVS 287
Query: 313 DVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372
DV +DPMCG G IP+E ++ + ++FF+ GD N V ++ N+ H S L
Sbjct: 288 DVIVDPMCGTGAIPLEGAMEWQNSFFIAGDNNGTAVSRSVNNIKHILKKTQDGGSPSGLP 347
Query: 373 CNVRQ--LCFKP---ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAI 427
++ Q LC P + VD I+TD+PFGKRVGS+ N+ LY L L E+ ++ +P G+A
Sbjct: 348 LDIVQWDLCNLPMRSSSVDIIITDMPFGKRVGSRKKNWELYPLCLREMARVCKPGTGKAA 407
Query: 428 LLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLFDYAIHGLKEKH 485
LLT D+K +AL LWK + +N+ G+ + VF+L RT +F + E H
Sbjct: 408 LLTQDKKCFTKALLQMGGLWKKLHTVWVNVGGLHAGVFVLKRTNVIFGISSEDKTEPH 465
|
|
| MGI|MGI:1277973 Thumpd3 "THUMP domain containing 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 537 (194.1 bits), Expect = 1.1e-64, Sum P(2) = 1.1e-64
Identities = 117/305 (38%), Positives = 174/305 (57%)
Query: 196 DINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFGGKLNDTYFWLVD 254
D+ S C + ++ E + KFRVTCNR G KH TS E+ R FGG + + + W D
Sbjct: 205 DVLSSCKDETGQSLREETEPQVQKFRVTCNRAGEKHCFTSNEAARDFGGAIQEYFKWKAD 264
Query: 255 LDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDV 314
+ ++D+++ L I NE V + +T+ SLHRRNI F TTL+ T+AY M+RL P P DV
Sbjct: 265 MTNFDVEVLLNIHDNEVIVAIALTEESLHRRNITHFGPTTLRSTLAYGMLRLCEPKPTDV 324
Query: 315 FLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANV---LHNS----GNLNRELK 367
+DPMCG G IP+E + + H + + GD N V + N+ L S G L
Sbjct: 325 IVDPMCGTGAIPIEGATEWSHCYHIAGDNNPLAVNRAANNISSLLTKSQIKDGKTTWGLP 384
Query: 368 VSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAI 427
+ + ++ L + A VD IVTD+PFGKR+GSK N+ LY L E+ ++ RP GRA+
Sbjct: 385 IDAVQWDICNLPLRTASVDIIVTDMPFGKRMGSKKRNWNLYPACLREMSRVCRPGTGRAV 444
Query: 428 LLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLFDYAIHGLKEKHKG 487
LLT D+K +AL +W+ + +N+ G+ + V++L RTA F +H ++ +G
Sbjct: 445 LLTQDKKCFTKALSGMGHVWRKVHVVWVNIGGLHAAVYLLKRTAQAF---VHP-SDQDEG 500
Query: 488 KPFPP 492
+ PP
Sbjct: 501 RD-PP 504
|
|
| UNIPROTKB|F1N027 THUMPD3 "THUMP domain-containing protein 3" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
Identities = 161/499 (32%), Positives = 261/499 (52%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S+ Q+TI ATV TGFE +E +EK G + K G+++F+I + + +V LR
Sbjct: 32 SESEHLQVTIGATVPTGFEQTAADEVREKLGSSCKISKDRGKIYFDISVDSLAQVHCLRS 91
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESXXXXXXXXXVATIQNKVLEIDWKKYMEIW 129
+DN+ ++ F+++ F K T+E+ KD + ++ W ++IW
Sbjct: 92 VDNLFVVVQEFKDYQF--KETKEEV-LKD--------------FEELAGKLPWSDPLKIW 134
Query: 130 KQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQN 189
K T + + N N + + R + ++K+ E V++ QI +N
Sbjct: 135 KINTCFKKKKTKR-RKLNP-NSSKQKIDNGRGDTTVEKDVKKELTNSVSDSQISDY-YEN 191
Query: 190 QELKEI------DINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFG 242
+KE D + C + ++ + + +LKFRVTCNR G KH +S E+ R FG
Sbjct: 192 PAIKEQVSTLIGDGLTSCKDETEENSKEEADPEVLKFRVTCNRAGEKHCFSSNEAARDFG 251
Query: 243 GKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYN 302
G + D + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI F TTL+ T+AY
Sbjct: 252 GAVQDYFKWKADMTNFDVEVLLNIHDNEVVVGIALTEESLHRRNITHFGPTTLRSTLAYG 311
Query: 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN---- 358
M+RL +P P D+ +DPMCG G IP+E + + + + + GD N L + AN + +
Sbjct: 312 MLRLCAPQPTDIIVDPMCGTGAIPIEGATEWSNCYHIAGD-NNPLAVNRAANNISSLLTK 370
Query: 359 ----SGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIE 414
G L L + + ++ L + VD IVTD+PFGKR+GSK N+ LY L E
Sbjct: 371 IQVKEGKLPLGLPIDTIQWDICNLPLRTGSVDIIVTDMPFGKRMGSKKRNWNLYPACLRE 430
Query: 415 IGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLF 474
+ ++ RP GRA+LLT D+K +AL LW+ + +N+ G+ + V++L RT F
Sbjct: 431 MSRVCRPGTGRAVLLTQDKKCFAKALSGMGHLWRKVHTVWVNIGGLHAAVYLLKRTPQSF 490
Query: 475 DYAIHGLKEKHKGKPFPPR 493
+H +E + P R
Sbjct: 491 ---VHPSEEDGERCPCTQR 506
|
|
| UNIPROTKB|Q2T9W2 THUMPD3 "THUMP domain-containing protein 3" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
Identities = 161/499 (32%), Positives = 261/499 (52%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S+ Q+TI ATV TGFE +E +EK G + K G+++F+I + + +V LR
Sbjct: 32 SESEHLQVTIGATVPTGFEQTAADEVREKLGSSCKISKDRGKIYFDITVDSLAQVHCLRS 91
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESXXXXXXXXXVATIQNKVLEIDWKKYMEIW 129
+DN+ ++ F+++ F K T+E+ KD + ++ W ++IW
Sbjct: 92 VDNLFVVVQEFKDYQF--KETKEEV-LKD--------------FEELAGKLPWSDPLKIW 134
Query: 130 KQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQN 189
K T + + N N + + R + ++K+ E V++ QI +N
Sbjct: 135 KINTCFKKKKTKR-RKLNP-NSSKQKIDNGRGDTTVEKDVKKELTNSVSDSQISDY-YEN 191
Query: 190 QELKEI------DINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFG 242
+KE D + C + ++ + + +LKFRVTCNR G KH +S E+ R FG
Sbjct: 192 PAIKEQVSTLIGDGLTSCKDETEENSKEEADPEVLKFRVTCNRAGEKHCFSSNEAARDFG 251
Query: 243 GKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYN 302
G + D + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI F TTL+ T+AY
Sbjct: 252 GAVQDYFKWKADMTNFDVEVLLNIHDNEVVVGIALTEESLHRRNITHFGPTTLRSTLAYG 311
Query: 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN---- 358
M+RL +P P D+ +DPMCG G IP+E + + + + + GD N L + AN + +
Sbjct: 312 MLRLCAPQPTDIIVDPMCGTGAIPIEGATEWSNCYHIAGD-NNPLAVNRAANNISSLLTK 370
Query: 359 ----SGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIE 414
G L L + + ++ L + VD IVTD+PFGKR+GSK N+ LY L E
Sbjct: 371 IQVKEGKLPLGLPIDTIQWDICNLPLRTGSVDIIVTDMPFGKRMGSKKRNWNLYPACLRE 430
Query: 415 IGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLF 474
+ ++ RP GRA+LLT D+K +AL LW+ + +N+ G+ + V++L RT F
Sbjct: 431 MSRVCRPGTGRAVLLTQDKKCFAKALSGMGHLWRKVHTVWVNIGGLHAAVYLLKRTPQSF 490
Query: 475 DYAIHGLKEKHKGKPFPPR 493
+H +E + P R
Sbjct: 491 ---VHPSEEDGERCPCTQR 506
|
|
| RGD|1560852 Thumpd3 "THUMP domain containing 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 525 (189.9 bits), Expect = 3.7e-64, Sum P(2) = 3.7e-64
Identities = 120/337 (35%), Positives = 187/337 (55%)
Query: 166 KKESSCETEPQVNNVQIEKGDLQNQELKEI--DINSMCSSQNQKTNFTNPEENLLKFRVT 223
KK +S +P + + + +E+ + ++ + +N ++ E + KFRVT
Sbjct: 174 KKLASGAADPHI--LDYYENPAIKEEISTLIGEVLASGEDENGQSLREEAEPQVQKFRVT 231
Query: 224 CNRVG-KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSL 282
CNR G KH TS E+ R FGG + + + W D+ ++D+++ L I NE V + +T+ SL
Sbjct: 232 CNRAGEKHCFTSNEAARGFGGAVQEYFKWKADMTNFDVEVLLNIHNNEVIVAIALTEESL 291
Query: 283 HRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGD 342
HRRNI F TTL+ T+AY M+RL P P DV +DPMCG G IP+E + + H + + GD
Sbjct: 292 HRRNITHFGPTTLRSTLAYGMLRLCEPKPTDVIVDPMCGTGAIPIEGATEWSHCYHIAGD 351
Query: 343 INEKLVLKTQANV---LHNS----GNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFG 395
N V + N+ L S G + L + + ++ L + A VD IVTD+PFG
Sbjct: 352 NNPLAVNRAANNISSLLTKSQIKDGKTSWGLPIDAVQWDICNLPLRTASVDIIVTDMPFG 411
Query: 396 KRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKI 455
KR+GSK N+ LY L E+ ++ RP+ GRA+LLT D+K +AL +W+ + +
Sbjct: 412 KRMGSKKRNWNLYPACLREMSRVCRPRTGRAVLLTQDKKCFTKALSGMGHVWRKVHTVWV 471
Query: 456 NMSGMKSFVFILNRTADLFDYAIHGLKEKHKGKPFPP 492
N+ G+ + V++L RT F +H ++ GK PP
Sbjct: 472 NIGGLHAAVYLLKRTPQDF---VHP-SDQDGGKD-PP 503
|
|
| UNIPROTKB|F1P5S9 THUMPD3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
Identities = 155/464 (33%), Positives = 246/464 (53%)
Query: 19 IEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFIIA 78
I ATV TGFE E QEK G + + G+++F + + + +V LR +DN+ ++
Sbjct: 1 IGATVPTGFEVTAAAEVQEKLGSASRISRDRGKIYFEVPARSLPEVHRLRSVDNLFVVVE 60
Query: 79 TFENFGFSNKGTEEDSGQKDESXXXXXXXXXVATIQNKVLEIDWKKYMEIWKQITNYNGV 138
F+++ F K T+ED+ KD +++ V ++ W ++IW+ N
Sbjct: 61 EFKDYQF--KETKEDA-LKD--------------LEDLVKKLPWADPLKIWE----LNNS 99
Query: 139 LYPSIEQFNKYN-DILRHKKSIRNEINIKKESSC---ETEPQVNNVQIEKGDLQNQELKE 194
L + K N K+ + + +K+ + + N E Q+ E +
Sbjct: 100 LKKKKTKRKKQNLQRTASKEKLDDGGEEEKDHRAAGGQEDCAPNTAGAEPAADQSAEEMQ 159
Query: 195 IDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFGGKLNDTYFWLV 253
+ +S ++ N + +LKFRVTCNR G KH+ TS E+ R FGG + + + W
Sbjct: 160 GEASSGAETKAGDDNKDEGDAKVLKFRVTCNRAGDKHSFTSNEAARDFGGAVQEHFQWKA 219
Query: 254 DLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGD 313
D+ ++D+++ L I NE VG+ +T+ SLHRRNI F TTL+ T+AY M+RL P P D
Sbjct: 220 DMTNFDVEVLLNIHNNEVVVGIALTEESLHRRNITHFGPTTLRSTLAYGMLRLCDPQPTD 279
Query: 314 VFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN-SGNLNRELKVS--- 369
+ +DPMCG G IP+E ++ +P + + GD N + V + +N+ N N+E S
Sbjct: 280 IIVDPMCGTGAIPIEGAMEWPGCYHIAGDNNPQAVKRAASNICSLLKKNENKESSASLGA 339
Query: 370 PLVCNVRQLCFKP---ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRA 426
PL +C P VD IVTD+PFGKR+GSK N+ LY L+E+G+I P GRA
Sbjct: 340 PLDIIQWDICNLPLRTGSVDVIVTDMPFGKRIGSKKKNWDLYPACLMEMGRICTPGTGRA 399
Query: 427 ILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRT 470
+LLT D+K +AL +W+ + +N+ G+ + V++L RT
Sbjct: 400 VLLTQDKKCFAKALSRLGHIWRKNHTVWVNVGGLHAAVYLLKRT 443
|
|
| UNIPROTKB|E2R6J3 E2R6J3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 157/498 (31%), Positives = 266/498 (53%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S Q+TI ATV TGFE +E +EK G + K G+++F+I ++ + +V LR
Sbjct: 32 SESQHLQVTIGATVPTGFEQTAADEVREKLGSSCKISKDRGKIYFDISVESLAQVHCLRS 91
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESXXXXXXXXXVATIQNKVLEIDWKKYMEIW 129
+DN+ ++ F+++ F K T+E+ KD + ++ W +++W
Sbjct: 92 VDNLFVVVKEFKDYPF--KETKEEV-LKD--------------FEELAGKLPWSDPLKVW 134
Query: 130 KQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDL-- 187
K T++ ++ N+ + K+ N K + + + +NN ++ L
Sbjct: 135 KINTSFKKKKTKR-KKINQNSS----KEKTNNGQGDKTDERDDKKGFINNT-LDSHILDY 188
Query: 188 -QNQELKEIDINSM-------CSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESE 238
+N +KE +++++ C + +++ + LLKFRVTCNR G KH +S E+
Sbjct: 189 YENPAIKE-EVSTLVGDDLASCKDEKDESSKEETQPELLKFRVTCNRAGEKHCFSSNEAA 247
Query: 239 RAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPT 298
R FGG + D + W D+ ++D+++ L I E VG+ +T+ SLHRRNI F TTL+ T
Sbjct: 248 RDFGGAIQDYFKWKADMTNFDVEVLLNIHDKEIVVGIALTEESLHRRNITHFGPTTLRST 307
Query: 299 IAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANV--- 355
+AY M+RL +P P D+ +DPMCG GTIP+E + + + + + GD N V + N+
Sbjct: 308 LAYGMLRLCAPQPTDIIVDPMCGTGTIPIEGATEWSNCYHIAGDNNPLAVNRAANNISSL 367
Query: 356 LHNS----GNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLF 411
L S G ++ L + + ++ L + VD IVTD+PFGKR+GSK N+ LY
Sbjct: 368 LTKSQIKEGKVSWGLPIDAVQWDICNLPLRTGSVDIIVTDMPFGKRMGSKKRNWNLYPAC 427
Query: 412 LIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTA 471
L E+ ++ RP GRA LLT D+K +AL +W+ + +N+ G+ + V++L RT
Sbjct: 428 LREMSRVCRPGTGRAALLTQDKKCFAKALSGMGHVWRKIHTVWVNIGGLHAAVYLLKRTP 487
Query: 472 DLFDYAIHGLKEKHKGKP 489
F IH ++ + +P
Sbjct: 488 QAF---IHPSEQDGEKRP 502
|
|
| UNIPROTKB|Q9BV44 THUMPD3 "THUMP domain-containing protein 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
Identities = 161/500 (32%), Positives = 266/500 (53%)
Query: 1 MDLH---KLVSTAQSD-----EKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRV 52
++LH K V +SD E +TI ATV TGFE +E +EK G + + G++
Sbjct: 14 VNLHENQKSVQVTESDLGSESELLVTIGATVPTGFEQTAADEVREKLGSSCKISRDRGKI 73
Query: 53 FFNIDLKDIEKVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESXXXXXXXXXVAT 112
+F I ++ + +V LR +DN+ ++ F+++ F K T+E+ KD
Sbjct: 74 YFVISVESLAQVHCLRSVDNLFVVVQEFQDYQF--KQTKEEV-LKD-------------- 116
Query: 113 IQNKVLEIDWKKYMEIWKQITNYNG--VLYPSIEQFNKYNDILRHKKSIR-NEINIKKES 169
++ ++ W +++WK ++ I Q N + + + + ++ ++ N+KKE
Sbjct: 117 FEDLAGKLPWSNPLKVWKINASFKKKKAKRKKINQ-NSSKEKINNGQEVKIDQRNVKKEF 175
Query: 170 SCETEPQVNNVQIEKGDLQNQELKEIDINSM-------CSSQNQKTNFTNPEENLLKFRV 222
T +++ ++ +N +KE D++++ C + +++ E +LKFRV
Sbjct: 176 ---TSHALDSHILDY--YENPAIKE-DVSTLIGDDLASCKDETDESSKEETEPQVLKFRV 229
Query: 223 TCNRVG-KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTS 281
TCNR G KH TS E+ R FGG + D + W D+ ++D+++ L I NE VG+ +T+ S
Sbjct: 230 TCNRAGEKHCFTSNEAARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIALTEES 289
Query: 282 LHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCG 341
LHRRNI F TTL+ T+AY M+RL P+P D+ +DPMCG G IP+E + + F + G
Sbjct: 290 LHRRNITHFGPTTLRSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWSDCFHIAG 349
Query: 342 DINEKLVLKTQANV---LHNS----GNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPF 394
D N V + N+ L S G + L + + ++ L + VD IVTDLPF
Sbjct: 350 DNNPLAVNRAANNIASLLTKSQIKEGKPSWGLPIDAVQWDICNLPLRTGSVDIIVTDLPF 409
Query: 395 GKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIK 454
GKR+GSK N+ LY L E+ ++ P GRA+LLT D K +AL +W+ +
Sbjct: 410 GKRMGSKKRNWNLYPACLREMSRVCTPTTGRAVLLTQDTKCFTKALSGMRHVWRKVDTVW 469
Query: 455 INMSGMKSFVFILNRTADLF 474
+N+ G+++ V++L RT F
Sbjct: 470 VNVGGLRAAVYVLIRTPQAF 489
|
|
| UNIPROTKB|E2R3N7 THUMPD3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
Identities = 156/499 (31%), Positives = 265/499 (53%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S Q+TI ATV TGFE +E +EK G + K G+++F+I ++ + +V LR
Sbjct: 32 SESQHLQVTIGATVPTGFEQTAADEVREKLGSSCKISKDRGKIYFDISVESLAQVHCLRS 91
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESXXXXXXXXXVATIQNKVLEIDWKKYMEIW 129
+DN+ ++ F+++ F K T+E+ KD + ++ W +++W
Sbjct: 92 VDNLFVVVKEFKDYPF--KETKEEV-LKD--------------FEELAGKLPWSDPLKVW 134
Query: 130 KQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDL-- 187
K T++ ++ N+ + K+ N K + + + +NN ++ L
Sbjct: 135 KINTSFKKKKTKR-KKINQNSS----KEKTNNGQGDKTDERDDKKGFINNT-LDSHILDY 188
Query: 188 -QNQELKEIDINSM-------CSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESE 238
+N +KE +++++ C + +++ + LLKFRVTCNR G KH +S E+
Sbjct: 189 YENPAIKE-EVSTLVGDDLASCKDEKDESSKEETQPELLKFRVTCNRAGEKHCFSSNEAA 247
Query: 239 RAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPT 298
R FGG + D + W D+ ++D+++ L I E VG+ +T+ SLHRRNI F TTL+ T
Sbjct: 248 RDFGGAIQDYFKWKADMTNFDVEVLLNIHDKEIVVGIALTEESLHRRNITHFGPTTLRST 307
Query: 299 IAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANV--- 355
+AY M+RL +P P D+ +DPMCG G IP+E + + + + + GD N V + N+
Sbjct: 308 LAYGMLRLCAPQPTDIIVDPMCGTGAIPIEGATEWSNCYHIAGDNNPLAVNRAANNISSL 367
Query: 356 LHNS----GNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLF 411
L S G ++ L + + ++ L + VD IVTD+PFGKR+GSK N+ LY
Sbjct: 368 LTKSQIKEGKVSWGLPIDAVQWDICNLPLRTGSVDIIVTDMPFGKRMGSKKRNWNLYPAC 427
Query: 412 LIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTA 471
L E+ ++ RP GRA LLT D+K +AL +W+ + +N+ G+ + V++L RT
Sbjct: 428 LREMSRVCRPGTGRAALLTQDKKCFAKALSGMGHVWRKVHTVWVNIGGLHAAVYLLKRTP 487
Query: 472 DLFDYAIHGLKEKHKGKPF 490
F IH ++ + P+
Sbjct: 488 QAF---IHPSEQDGERTPW 503
|
|
| UNIPROTKB|F6XPR6 F6XPR6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
Identities = 130/412 (31%), Positives = 216/412 (52%)
Query: 61 IEKVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESXXXXXXXXXVATIQNKVLEI 120
+ +V LR +DN+ ++ F+++ F K T+E+ KD + ++
Sbjct: 13 VPEVHCLRSVDNLFVVVKEFKDYPF--KETKEEV-LKD--------------FEELAGKL 55
Query: 121 DWKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNV 180
W +++WK T++ ++ N+ + K+ N K + + + +NN
Sbjct: 56 PWSDPLKVWKINTSFKKKKTKR-KKINQNSS----KEKTNNGQGDKTDERDDKKGFINNT 110
Query: 181 QIEKGDL---QNQELKEIDINSM-------CSSQNQKTNFTNPEENLLKFRVTCNRVG-K 229
++ L +N +KE +++++ C + +++ + LLKFRVTCNR G K
Sbjct: 111 -LDSHILDYYENPAIKE-EVSTLVGDDLASCKDEKDESSKEETQPELLKFRVTCNRAGEK 168
Query: 230 HTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE 289
H +S E+ R FGG + D + W D+ ++D+++ L I E VG+ +T+ SLHRRNI
Sbjct: 169 HCFSSNEAARDFGGAIQDYFKWKADMTNFDVEVLLNIHDKEIVVGIALTEESLHRRNITH 228
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
F TTL+ T+AY M+RL +P P D+ +DPMCG GTIP+E + + + + + GD N V
Sbjct: 229 FGPTTLRSTLAYGMLRLCAPQPTDIIVDPMCGTGTIPIEGATEWSNCYHIAGDNNPLAVN 288
Query: 350 KTQANV---LHNS----GNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKS 402
+ N+ L S G ++ L + + ++ L + VD IVTD+PFGKR+GSK
Sbjct: 289 RAANNISSLLTKSQIKEGKVSWGLPIDAVQWDICNLPLRTGSVDIIVTDMPFGKRMGSKK 348
Query: 403 NNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIK 454
N+ LY L E+ ++ RP GRA LLT D+K +AL +W+ K K
Sbjct: 349 RNWNLYPACLREMSRVCRPGTGRAALLTQDKKCFAKALSGMGHVWRKNKMGK 400
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q2T9W2 | THUM3_BOVIN | No assigned EC number | 0.3266 | 0.9311 | 0.9090 | yes | N/A |
| Q9BV44 | THUM3_HUMAN | No assigned EC number | 0.3238 | 0.9048 | 0.8816 | yes | N/A |
| P97770 | THUM3_MOUSE | No assigned EC number | 0.3126 | 0.8927 | 0.8732 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 494 | |||
| pfam01170 | 172 | pfam01170, UPF0020, Putative RNA methylase family | 8e-31 | |
| COG0116 | 381 | COG0116, COG0116, Predicted N6-adenine-specific DN | 1e-23 | |
| COG1041 | 347 | COG1041, COG1041, Predicted DNA modification methy | 2e-14 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 5e-14 | |
| TIGR01177 | 329 | TIGR01177, TIGR01177, TIGR01177 family protein | 2e-11 | |
| smart00981 | 83 | smart00981, THUMP, The THUMP domain is named after | 4e-09 | |
| COG0301 | 383 | COG0301, ThiI, Thiamine biosynthesis ATP pyrophosp | 1e-08 | |
| cd11715 | 152 | cd11715, THUMP_AdoMetMT, THUMP domain associated w | 2e-08 | |
| cd11716 | 166 | cd11716, THUMP_ThiI, THUMP domain of thiamine bios | 8e-08 | |
| PRK11783 | 702 | PRK11783, rlmL, 23S rRNA m(2)G2445 methyltransfera | 2e-07 | |
| pfam02926 | 92 | pfam02926, THUMP, THUMP domain | 2e-07 | |
| cd11715 | 152 | cd11715, THUMP_AdoMetMT, THUMP domain associated w | 4e-07 | |
| PRK01269 | 482 | PRK01269, PRK01269, tRNA s(4)U8 sulfurtransferase; | 5e-07 | |
| cd11688 | 148 | cd11688, THUMP, THUMP domain, predicted to bind RN | 1e-04 | |
| PRK01565 | 394 | PRK01565, PRK01565, thiamine biosynthesis protein | 0.002 |
| >gnl|CDD|216342 pfam01170, UPF0020, Putative RNA methylase family UPF0020 | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 8e-31
Identities = 57/180 (31%), Positives = 84/180 (46%), Gaps = 17/180 (9%)
Query: 285 RNIVEFN-ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL----SYPHTFFV 339
R F LKPT+A MV LA PGD LDPMCG GTI +E +L P
Sbjct: 1 RGYRPFFHPAPLKPTLARAMVNLAGWKPGDPLLDPMCGSGTILIEAALMGANIAPL---Y 57
Query: 340 CGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVG 399
DI+ ++V + N N+G ++ V + L VD IVT+ P+G R+G
Sbjct: 58 GSDIDWRMVQGARIN-AENAGVGDKIEFVQADAAKLPLL---NGSVDAIVTNPPYGIRIG 113
Query: 400 SKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSG 459
SK LY FL E +++R GR + T ++K +A + + + +++ G
Sbjct: 114 SKGALEKLYPAFLREAKRVLR---GRLVFATPEKKDFEKA--AEERGLRKKHEFNVHLGG 168
|
This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains. Length = 172 |
| >gnl|CDD|223194 COG0116, COG0116, Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 1e-23
Identities = 58/259 (22%), Positives = 96/259 (37%), Gaps = 51/259 (19%)
Query: 219 KFRVTCNRVGKHTVTS----MESERAFGGKLNDTYFW--LVDLDDYDIDINLQIRYNEAY 272
F V VG H TS + A + Y VDLD D+ IN+++ + A
Sbjct: 92 TFAVRFRGVGSHLFTSPDIARIVKDAIVDRFRRKYGRRPSVDLDGPDVRINVELDKDTAT 151
Query: 273 VGLPVTQTSLHRRNIVEFN-ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
+G+ T SLH+R ++ LK T+A ++ LA P + LDPMCG GTI +E +L
Sbjct: 152 LGIDTTGDSLHKRGYRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAAL 211
Query: 332 ---------------------------------------SYPHTFFVCGDINEKLVLKTQ 352
DI+ + + +
Sbjct: 212 IAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK 271
Query: 353 ANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFL 412
AN + + L ++++ P+G+R+GS++ LYR F
Sbjct: 272 ANAR----AAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFG 327
Query: 413 IEIGKIVRPQIGRAILLTS 431
+ +++ R + TS
Sbjct: 328 RTLKRLL-AGWSRYVFTTS 345
|
Length = 381 |
| >gnl|CDD|223971 COG1041, COG1041, Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 2e-14
Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 10/154 (6%)
Query: 281 SLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVC 340
+R F ++ P +A MV LA G++ LDP CG G I +E L +
Sbjct: 169 DPEKRPF--FRPGSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARV--IG 224
Query: 341 GDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGS 400
DI+E++V + N+ + E V + L + VD I TD P+G+
Sbjct: 225 SDIDERMVRGAKINLEY----YGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYGRSTKI 280
Query: 401 KSNNFL-LYRLFLIEIGKIVRPQIGRAILLTSDR 433
K LY L ++++P GR +
Sbjct: 281 KGEGLDELYEEALESASEVLKP-GGRIVFAAPRD 313
|
Length = 347 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 5e-14
Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 6/122 (4%)
Query: 312 GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371
GD LDP G G + + + P V +++ + + + +V +
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLAL----AGLAPRVRVV 56
Query: 372 VCNVRQL-CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430
V + R+L D ++ + P+G R G +N LY FL ++++P G +++T
Sbjct: 57 VGDARELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPG-GVLVVIT 115
Query: 431 SD 432
Sbjct: 116 PA 117
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|233303 TIGR01177, TIGR01177, TIGR01177 family protein | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 2e-11
Identities = 56/224 (25%), Positives = 88/224 (39%), Gaps = 21/224 (9%)
Query: 219 KFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVT 278
F V + ++V ER G L F V L DI + + I + Y+G +
Sbjct: 85 SFAVRVRDLRGYSVDKARLERKIGAILKKKGF-KVSLRRPDIVVRVVITEDIFYLGRVLE 143
Query: 279 --------QTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECS 330
+ RR F ++ P +A MV LA GD LDP CG G +E
Sbjct: 144 ERDKEQFIERKPDRRPF--FKPGSMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAG 201
Query: 331 LSYPHTFFVCG-DINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389
L V G DI+ K+V + N+ H G + +K + +L VD I
Sbjct: 202 LMGAK---VIGCDIDWKMVAGARINLEH-YGIEDFFVKRG----DATKLPLSSESVDAIA 253
Query: 390 TDLPFGKRVGSKSN-NFLLYRLFLIEIGKIVRPQIGRAILLTSD 432
TD P+G+ + + LY L E ++++ + + +
Sbjct: 254 TDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297
|
This family is found exclusively in the Archaea [Hypothetical proteins, Conserved]. Length = 329 |
| >gnl|CDD|214952 smart00981, THUMP, The THUMP domain is named after after thiouridine synthases, methylases and PSUSs | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 4e-09
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 219 KFRVTCNRVGKHT-VTSMESERAFGGKLNDTYFWL-VDLDDYDIDINLQIRYNEAYVGL 275
F V R GK+ TS+E +RA G KL + VDL + D+ I +++R ++AY+ +
Sbjct: 24 TFAVRAKRRGKNHEFTSLEVKRAIGDKLLEKTGGRKVDLKNPDVVIRVELRKDKAYLSI 82
|
The THUMP domain consists of about 110 amino acid residues. The structure of ThiI reveals that the THUMP has a fold unlike that of previously characterised RNA-binding domains. It is predicted that this domain is an RNA-binding domain The THUMP domain probably functions by delivering a variety of RNA modification enzymes to their targets. Length = 83 |
| >gnl|CDD|223378 COG0301, ThiI, Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 11/69 (15%)
Query: 220 FRVTCNRVGK-HTVTSMESERAFGGKLNDTYFWL-VDLDDYDIDINLQIRYNEAYV---- 273
F+V R GK TS+E R G + + VDL + D++I+++IR ++AY+
Sbjct: 104 FKVRARRAGKEFPFTSLEVNRYVGEAILENIESAGVDLKNPDVEIHIEIREDKAYIYTER 163
Query: 274 -----GLPV 277
GLPV
Sbjct: 164 IKGPGGLPV 172
|
Length = 383 |
| >gnl|CDD|212584 cd11715, THUMP_AdoMetMT, THUMP domain associated with S-adenosylmethionine-dependent methyltransferases | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 2e-08
Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 28/109 (25%)
Query: 21 ATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKV-KELRGIDNILFIIAT 79
AT G E+++ E + +D + G V F DL+D + LR +L ++A
Sbjct: 3 ATCPPGLEELLAAELKALGAED--VEVGPGGVSFEGDLEDAYRANLWLRTAHRVLLLLAE 60
Query: 80 FENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEI 128
FE +D + IDW+ Y++
Sbjct: 61 FEAE------DFDD-------------------LYELAKAIDWEDYLDP 84
|
Proteins of this family contain an N-terminal THUMP domain and a C-terminal S-adenosylmethionine-dependent methyltransferase domain. Members have been implicated in the modification of 23S RNA m2G2445, a highly conserved modification in bacteria and in the m2G6 modification of tRNA. The THUMP domain is named after thiouridine synthases, methylases and PSUSs. The domain consists of about 110 amino acid residues. It is predicted to be an RNA-binding domain and probably functions by delivering a variety of RNA modification enzymes to their targets. Length = 152 |
| >gnl|CDD|212585 cd11716, THUMP_ThiI, THUMP domain of thiamine biosynthesis protein ThiI | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 8e-08
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 220 FRVTCNRVGK-HTVTSMESERAFGGKLNDTYFWL-VDLDDYDIDINLQIRYNEAYV 273
F+V R K TSME R G L + L VDL + D+ I ++IR + AYV
Sbjct: 102 FKVRAKRADKSFPFTSMEINREVGAALLENTPDLKVDLKNPDVTIRVEIREDGAYV 157
|
ThiI is an enzyme responsible for the formation of the modified base S(4)U (4-thiouridine) found at position 8 in some prokaryotic tRNAs. This modification acts as a signal for UV exposure, triggering a response that provides protection against its damaging effects. ThiI consists of an N-terminal THUMP domain, followed by an NFLD domain, and a C-terminal PP-loop pyrophosphatase domain. The N-terminal THUMP domain has been implicated in the recognition of the acceptor-stem region. The THUMP domain is named after thiouridine synthases, methylases and PSUSs. The domain consists of about 110 amino acid residues. It is predicted to be an RNA-binding domain and probably functions by delivering a variety of RNA modification enzymes to their targets. Length = 166 |
| >gnl|CDD|236981 PRK11783, rlmL, 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 2e-07
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLAS-PI 310
VD + DI IN ++ EA + L ++ SLH+R LK +A ++ + P
Sbjct: 130 VDKEQPDIRINARLNKGEATISLDLSGESLHQRGYRQATGEAPLKENLAAAILLRSGWPQ 189
Query: 311 PGDVFLDPMCGGGTIPVE 328
G LDPMCG GT+ +E
Sbjct: 190 EGTPLLDPMCGSGTLLIE 207
|
Length = 702 |
| >gnl|CDD|217290 pfam02926, THUMP, THUMP domain | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-07
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 219 KFRVTCNRVGK-HTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGL 275
F V R GK H TS E R G + + VDL++ DI ++++I ++AY+ +
Sbjct: 33 TFAVRTKRRGKNHEFTSREVNREVGKAILERTGLKVDLENPDIVVHVEILKDKAYISI 90
|
The THUMP domain is named after after thiouridine synthases, methylases and PSUSs. The THUMP domain consists of about 110 amino acid residues. The structure of ThiI reveals that the THUMP has a fold unlike that of previously characterized RNA-binding domains. It is predicted that this domain is an RNA-binding domain The THUMP domain probably functions by delivering a variety of RNA modification enzymes to their targets. Length = 92 |
| >gnl|CDD|212584 cd11715, THUMP_AdoMetMT, THUMP domain associated with S-adenosylmethionine-dependent methyltransferases | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 4e-07
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 219 KFRVTCNRVGKHTVTSMESERAFGGKLNDTY-----FWLVDLDDYDIDINLQIRYNEAYV 273
F V RVG S + + D + VDLD+ D+ I + + + A +
Sbjct: 87 TFAVRATRVGSKLFHSQFAALRVKDAIVDRFREKGKRPSVDLDNPDVRIRVHLSKDRATL 146
Query: 274 GLPVT 278
L ++
Sbjct: 147 SLDLS 151
|
Proteins of this family contain an N-terminal THUMP domain and a C-terminal S-adenosylmethionine-dependent methyltransferase domain. Members have been implicated in the modification of 23S RNA m2G2445, a highly conserved modification in bacteria and in the m2G6 modification of tRNA. The THUMP domain is named after thiouridine synthases, methylases and PSUSs. The domain consists of about 110 amino acid residues. It is predicted to be an RNA-binding domain and probably functions by delivering a variety of RNA modification enzymes to their targets. Length = 152 |
| >gnl|CDD|234932 PRK01269, PRK01269, tRNA s(4)U8 sulfurtransferase; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 5e-07
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTYFWL-VDLDDYDIDINLQIRYNEAYV----- 273
F V R GKH TS++ ER GG LN VDL + D+ ++L+IR + Y+
Sbjct: 107 FCVRVKRRGKHDFTSIDVERYVGGGLNQHIESAGVDLKNPDVTVHLEIRDDRLYLVTERH 166
Query: 274 ----GLPV-TQ 279
G P+ TQ
Sbjct: 167 EGLGGFPLGTQ 177
|
Length = 482 |
| >gnl|CDD|212583 cd11688, THUMP, THUMP domain, predicted to bind RNA | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 1e-04
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 219 KFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVG 274
KF V R K + S E G + D + VDLD+ DI +N+++ A +
Sbjct: 93 KFAVRARRRNKTILNSQEIAMKVGDAIVDAFNPEVDLDNPDIVVNVEVHKEIASIA 148
|
The THUMP domain is named after THioUridine synthases, RNA Methyltransferases and Pseudo-uridine synthases. It is predicted to be an RNA-binding domain and probably functions by delivering a variety of RNA modification enzymes to their targets. Length = 148 |
| >gnl|CDD|234960 PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.002
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 11/69 (15%)
Query: 220 FRVTCNRVGKH-TVTSMESERAFGGKLNDTY-FWLVDLDDYDIDINLQIRYNEAYV---- 273
F+V R K + SME R G + + + VD+ + D+ + +++R AYV
Sbjct: 105 FKVEARRSDKSFPLDSMELNRELGAYILENFPNLKVDVKNPDVTLRVEVRKEAAYVYTEK 164
Query: 274 -----GLPV 277
GLPV
Sbjct: 165 IPGAGGLPV 173
|
Length = 394 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 494 | |||
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 100.0 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 100.0 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 100.0 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 100.0 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.97 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.81 | |
| KOG2671|consensus | 421 | 99.79 | ||
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.69 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.68 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.68 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.67 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.65 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.64 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.64 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.62 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.62 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.6 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.6 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.6 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.6 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.57 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.57 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.57 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 99.56 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.56 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.54 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.54 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.53 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.53 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.52 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.52 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.52 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.52 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.52 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.49 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.49 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.45 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.44 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.43 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.42 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.42 | |
| KOG3420|consensus | 185 | 99.41 | ||
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.41 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.4 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.38 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 99.38 | |
| KOG2904|consensus | 328 | 99.38 | ||
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.37 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.37 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.36 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.36 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.36 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.36 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.36 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.36 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.35 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.35 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.34 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.34 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.34 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.33 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.33 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.32 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.32 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 99.31 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 99.3 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.3 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.3 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.29 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.29 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.28 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.28 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.27 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.27 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 99.26 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.26 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.26 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.26 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 99.25 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.25 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 99.24 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.24 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.24 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.24 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.21 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.21 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.21 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.21 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.21 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 99.2 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.2 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.19 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.19 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.19 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.19 | |
| KOG3191|consensus | 209 | 99.19 | ||
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.18 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.17 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.16 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.15 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.15 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 99.14 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.13 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.13 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 99.13 | |
| KOG1540|consensus | 296 | 99.13 | ||
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.13 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.12 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.12 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.11 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.1 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.1 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.1 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 99.08 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.07 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.07 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 99.06 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.05 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.05 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.05 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 99.05 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.04 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.03 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.02 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.02 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.01 | |
| PF02926 | 144 | THUMP: THUMP domain; InterPro: IPR004114 The THUMP | 99.01 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.0 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.0 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.99 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.99 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.99 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 98.98 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.97 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.97 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 98.97 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.94 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.94 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.92 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.92 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.91 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 98.89 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.89 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 98.89 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.86 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 98.86 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.86 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.85 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.84 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.84 | |
| KOG2187|consensus | 534 | 98.83 | ||
| PLN02476 | 278 | O-methyltransferase | 98.83 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.83 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.8 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 98.8 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.79 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 98.78 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.78 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 98.78 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.77 | |
| KOG1270|consensus | 282 | 98.77 | ||
| PRK06202 | 232 | hypothetical protein; Provisional | 98.77 | |
| KOG2730|consensus | 263 | 98.75 | ||
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.74 | |
| PLN02366 | 308 | spermidine synthase | 98.74 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.73 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.72 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.67 | |
| KOG1271|consensus | 227 | 98.66 | ||
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.65 | |
| COG1818 | 175 | Predicted RNA-binding protein, contains THUMP doma | 98.64 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.62 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.6 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.58 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.57 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.56 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.56 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.55 | |
| PRK01269 | 482 | tRNA s(4)U8 sulfurtransferase; Provisional | 98.55 | |
| PRK01565 | 394 | thiamine biosynthesis protein ThiI; Provisional | 98.53 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.51 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.48 | |
| KOG1541|consensus | 270 | 98.45 | ||
| KOG0820|consensus | 315 | 98.45 | ||
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 98.44 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 98.42 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.41 | |
| KOG2899|consensus | 288 | 98.38 | ||
| KOG4300|consensus | 252 | 98.37 | ||
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.35 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 98.35 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.33 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.31 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.31 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.3 | |
| COG0301 | 383 | ThiI Thiamine biosynthesis ATP pyrophosphatase [Co | 98.28 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.28 | |
| PRK08384 | 381 | thiamine biosynthesis protein ThiI; Provisional | 98.28 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.25 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 98.25 | |
| PLN02823 | 336 | spermine synthase | 98.24 | |
| TIGR00342 | 371 | thiazole biosynthesis/tRNA modification protein Th | 98.23 | |
| KOG1499|consensus | 346 | 98.23 | ||
| PRK13699 | 227 | putative methylase; Provisional | 98.21 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.18 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.14 | |
| KOG1500|consensus | 517 | 98.08 | ||
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.07 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.06 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.98 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.96 | |
| KOG3010|consensus | 261 | 97.95 | ||
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 97.93 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 97.92 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.91 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 97.91 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 97.89 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.88 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.87 | |
| KOG3045|consensus | 325 | 97.85 | ||
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 97.84 | |
| KOG2915|consensus | 314 | 97.84 | ||
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.82 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.81 | |
| PRK13699 | 227 | putative methylase; Provisional | 97.81 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 97.81 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 97.8 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.78 | |
| KOG1663|consensus | 237 | 97.77 | ||
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.75 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 97.75 | |
| KOG2361|consensus | 264 | 97.74 | ||
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.63 | |
| KOG1661|consensus | 237 | 97.6 | ||
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 97.58 | |
| KOG1122|consensus | 460 | 97.49 | ||
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.45 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 97.33 | |
| KOG1975|consensus | 389 | 97.33 | ||
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.32 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 97.29 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.28 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.27 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.26 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.17 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.16 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 97.12 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.11 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.11 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.09 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 97.08 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.05 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.04 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 96.98 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 96.97 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 96.94 | |
| PF07669 | 106 | Eco57I: Eco57I restriction-modification methylase; | 96.9 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 96.89 | |
| KOG2198|consensus | 375 | 96.82 | ||
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 96.79 | |
| KOG1253|consensus | 525 | 96.61 | ||
| KOG1709|consensus | 271 | 96.58 | ||
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 96.56 | |
| KOG3115|consensus | 249 | 96.52 | ||
| KOG2078|consensus | 495 | 96.47 | ||
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 96.37 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 96.32 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.25 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 96.22 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 96.16 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 96.07 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 96.03 | |
| KOG1331|consensus | 293 | 95.56 | ||
| KOG4589|consensus | 232 | 95.55 | ||
| KOG1227|consensus | 351 | 95.5 | ||
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 95.49 | |
| KOG1269|consensus | 364 | 95.08 | ||
| COG1568 | 354 | Predicted methyltransferases [General function pre | 94.98 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 94.97 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 94.7 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 94.4 | |
| KOG3201|consensus | 201 | 94.09 | ||
| KOG4058|consensus | 199 | 94.03 | ||
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 93.91 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 93.89 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 93.75 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 93.22 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 93.19 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 93.05 | |
| PF02086 | 260 | MethyltransfD12: D12 class N6 adenine-specific DNA | 93.03 | |
| KOG2798|consensus | 369 | 93.02 | ||
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 92.94 | |
| KOG2940|consensus | 325 | 92.92 | ||
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 92.92 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 92.91 | |
| KOG1596|consensus | 317 | 92.04 | ||
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 92.01 | |
| KOG2912|consensus | 419 | 91.9 | ||
| COG1743 | 875 | Adenine-specific DNA methylase containing a Zn-rib | 91.85 | |
| KOG3178|consensus | 342 | 90.72 | ||
| COG4798 | 238 | Predicted methyltransferase [General function pred | 90.25 | |
| KOG2352|consensus | 482 | 89.87 | ||
| PHA01634 | 156 | hypothetical protein | 89.57 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 89.53 | |
| KOG1562|consensus | 337 | 89.48 | ||
| KOG1501|consensus | 636 | 88.45 | ||
| PF04378 | 245 | RsmJ: Ribosomal RNA small subunit methyltransferas | 87.46 | |
| KOG2360|consensus | 413 | 86.34 | ||
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 85.87 | |
| KOG2782|consensus | 303 | 85.64 | ||
| KOG3943|consensus | 291 | 85.0 | ||
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 84.41 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 84.04 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 83.87 | |
| COG1743 | 875 | Adenine-specific DNA methylase containing a Zn-rib | 83.41 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 82.77 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 81.78 | |
| KOG0822|consensus | 649 | 80.64 | ||
| PTZ00357 | 1072 | methyltransferase; Provisional | 80.36 |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-63 Score=503.68 Aligned_cols=327 Identities=25% Similarity=0.346 Sum_probs=287.7
Q ss_pred eEEEEEEcCCChHHHHHHHHHHHhCCccce-EEEcCeEEEEeChhhHHHHh-hhhhhhhhhhhhhcccccCCCCCCCccC
Q psy19 16 QITIEATVVTGFEDVVVEECQEKFGKDLLL-MKSIGRVFFNIDLKDIEKVK-ELRGIDNILFIIATFENFGFSNKGTEED 93 (494)
Q Consensus 16 ~~~~~~t~~~GlE~~~~~E~~~kl~~~~~~-~~~~G~V~F~~~~~~~~~~~-~lR~a~rl~~~l~~~~~~~~~~~~~~~~ 93 (494)
.++++|||++|||.++++||++ ||.. ++ ....|||+|.++.+.++++| |||+|+|+++++++|+..++.
T Consensus 2 ~~~l~aT~~~GLE~~~~~El~~-lg~~-e~~~~~~ggV~f~gd~~~~~~~nlwsRta~Ri~i~l~~fk~~~~~------- 72 (381)
T COG0116 2 MMRLFATTARGLEDLLARELEE-LGAE-EVAKVVNGGVHFEGDVELIYRANLWSRTASRILLPLGEFKAETLD------- 72 (381)
T ss_pred ceeEEeecCCcHHHHHHHHHHh-cCce-eccceeeccEEEeccHHHHHHHhHHHHHHHhhheeeeeeeeCCHH-------
Confidence 4789999999999999999988 9875 54 67899999999999999999 999999999999999877643
Q ss_pred CCCCcchhhHHhhhhhHHHHHHhhhccCchhhHHHhhhhhccCCCcCcchhhccchhhhhhhccccchhhcccccCccCc
Q psy19 94 SGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCET 173 (494)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~l~~~~~~~~W~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (494)
+ ||+.++.++|.++|...
T Consensus 73 ---------------d---ly~~v~~i~w~~~~~~~-------------------------------------------- 90 (381)
T COG0116 73 ---------------D---LYEAVKAINWEEYFPEG-------------------------------------------- 90 (381)
T ss_pred ---------------H---HHHHhhcCCHHHhCCCC--------------------------------------------
Confidence 2 99999999999975532
Q ss_pred ccccccchhccccchhhhhhhhhhhcccccccccCCCCCCCCcceEEEEEEEEecCcccChHHHHHHHHHHHHhhcCC--
Q psy19 174 EPQVNNVQIEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFW-- 251 (494)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tFrV~~~~~g~~~~~s~~~~~~v~~aI~d~~~~-- 251 (494)
.||.|++++.|+|.++|+++++.+|+||+|++..
T Consensus 91 --------------------------------------------~tf~V~~~~~~~~~~~s~~~a~~vkdAIvd~~~~~~ 126 (381)
T COG0116 91 --------------------------------------------ATFAVRFRGVGSHLFTSPDIARIVKDAIVDRFRRKY 126 (381)
T ss_pred --------------------------------------------CEEEEEEEeccCCccccHHHHHHHHHHHHHHHhhcc
Confidence 2899998889999999999999999999999842
Q ss_pred ----CCCCCCCCEEEEEEEecCcceeccccccccccccccc-ccccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHH
Q psy19 252 ----LVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIV-EFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIP 326 (494)
Q Consensus 252 ----~vdl~~pdi~i~v~l~~~~~~l~l~lsg~sL~~Rgy~-~~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtil 326 (494)
+||+..||+.|++.+.++.++|++|+||++||+|||| ..++|||+|+||++|+.+++|+++.+++|||||||||+
T Consensus 127 ~~r~~v~~~~Pdv~i~v~l~~~~~~l~iDttG~sLhkRGyR~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~ 206 (381)
T COG0116 127 GRRPSVDLDGPDVRINVELDKDTATLGIDTTGDSLHKRGYRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTIL 206 (381)
T ss_pred CCCCCccccCCCeEEEEEEEcCEEEEEEeCCCcchhhccccccCCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHH
Confidence 6999999999999999999999999999999999998 56999999999999999999999999999999999999
Q ss_pred HHHHhcCCC--------------------------------C-------eEEEEeCCHHHHHHHHHHHHhccCCCCcccc
Q psy19 327 VECSLSYPH--------------------------------T-------FFVCGDINEKLVLKTQANVLHNSGNLNRELK 367 (494)
Q Consensus 327 IEAA~~~~~--------------------------------~-------~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~ 367 (494)
||||++.++ + .++|+|||+++++.|+.|++.+|+ .+.
T Consensus 207 IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv----~d~ 282 (381)
T COG0116 207 IEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGV----GDL 282 (381)
T ss_pred HHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCC----Cce
Confidence 999998531 1 377999999999999999998876 677
Q ss_pred eeeeeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHhccccc
Q psy19 368 VSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALW 447 (494)
Q Consensus 368 i~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~~~~l~ 447 (494)
|.|.++|+..++.+-+.+|+||||||||.|++....+..||+.|.+.+.+.++- |..++++++.. +...+. +
T Consensus 283 I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~--ws~~v~tt~e~-~~~~~~-----~ 354 (381)
T COG0116 283 IEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAG--WSRYVFTTSED-LLFCLG-----L 354 (381)
T ss_pred EEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcC--CceEEEEccHH-HHHHHh-----h
Confidence 899999999985433689999999999999999877888999988888888873 55566666654 344443 4
Q ss_pred eeeeeEEEccCCceEEEEEEee
Q psy19 448 KCRKQIKINMSGMKSFVFILNR 469 (494)
Q Consensus 448 ~~~~~~~v~~Ggl~~~i~v~~~ 469 (494)
+..+.+.++||.+.|..+.+..
T Consensus 355 ra~~~~~~~ng~l~c~~~~~~~ 376 (381)
T COG0116 355 RADKKRKLYNGPLKCGGLQYHG 376 (381)
T ss_pred hhccceeecccceeeeeEEEeE
Confidence 6677889999999999998864
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-55 Score=490.48 Aligned_cols=330 Identities=21% Similarity=0.263 Sum_probs=286.8
Q ss_pred EEEEEEcCCChHHHHHHHHHHHhCCccceEEEcCeEEEEeChhhHHHHh-hhhhhhhhhhhhhcccccCCCCCCCccCCC
Q psy19 17 ITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVK-ELRGIDNILFIIATFENFGFSNKGTEEDSG 95 (494)
Q Consensus 17 ~~~~~t~~~GlE~~~~~E~~~kl~~~~~~~~~~G~V~F~~~~~~~~~~~-~lR~a~rl~~~l~~~~~~~~~~~~~~~~~~ 95 (494)
++|||||++|||++|++||++ ||.. .+...+|+|+|+++++++|++| +||+|+||++++++|+..+++
T Consensus 2 ~~~~a~~~~GlE~~l~~El~~-lg~~-~~~~~~ggV~f~g~~~~~~~~nl~~R~A~RVll~l~~f~a~~~~--------- 70 (702)
T PRK11783 2 NSLFASCAKGLEELLKDELEA-LGAS-ECKVVQGGVHFEGDLELAYRSCLWSRLASRILLPLAEFKVYSDL--------- 70 (702)
T ss_pred eeEEEECCccHHHHHHHHHHh-cCCc-ccEEEcCEEEEEeCHHHHHHHHHHhcchhheEEEeeeeecCCHH---------
Confidence 479999999999999999999 9975 5778999999999999999999 999999999999998766442
Q ss_pred CCcchhhHHhhhhhHHHHHHhhhccCchhhHHHhhhhhccCCCcCcchhhccchhhhhhhccccchhhcccccCccCccc
Q psy19 96 QKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEP 175 (494)
Q Consensus 96 ~~~~~~~~~~~l~~~~~l~~~~~~~~W~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (494)
+||+.++.+||++++...
T Consensus 71 ----------------~Ly~~v~~i~W~~~l~~~---------------------------------------------- 88 (702)
T PRK11783 71 ----------------DLYLGVQAIDWTEHFSPD---------------------------------------------- 88 (702)
T ss_pred ----------------HHHHHHHcCCHHHhCCCC----------------------------------------------
Confidence 299999999999864421
Q ss_pred ccccchhccccchhhhhhhhhhhcccccccccCCCCCCCCcceEEEEEEEEecCcccChHHHHHHHHHHHHhhcC-----
Q psy19 176 QVNNVQIEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYF----- 250 (494)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tFrV~~~~~g~~~~~s~~~~~~v~~aI~d~~~----- 250 (494)
.||+|+++..+++.+++.+++.+++++|+|++.
T Consensus 89 ------------------------------------------~tf~V~~~~~~s~l~~~~~~~~~vKdAI~d~~~~~~~~ 126 (702)
T PRK11783 89 ------------------------------------------KTFAVDFSGTNDEIRNTQFGALKVKDAIVDRFRRKGGP 126 (702)
T ss_pred ------------------------------------------CeEEEEEEEecCCccCcHHHHHHHHHHHHHHHHHhcCC
Confidence 179999988888888899999999999999984
Q ss_pred -CCCCCCCCCEEEEEEEecCcceeccccccccccccccc-ccccccchHHHHHHHHHHhCC-CCCCEEEEEcCCcChHHH
Q psy19 251 -WLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIV-EFNITTLKPTIAYNMVRLASP-IPGDVFLDPMCGGGTIPV 327 (494)
Q Consensus 251 -~~vdl~~pdi~i~v~l~~~~~~l~l~lsg~sL~~Rgy~-~~~~a~L~e~lAa~ll~la~~-~~g~~VLDP~CGSGtilI 327 (494)
-+||+++|++.|++++.+|.+++++++||++||+|||+ ..++|||+|+||++|+.+++| +++.+++|||||||||+|
T Consensus 127 rp~vd~~~pdv~i~~~~~~~~~~l~ld~sg~~L~rRgyr~~~~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilI 206 (702)
T PRK11783 127 RPSVDKEQPDIRINARLNKGEATISLDLSGESLHQRGYRQATGEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLI 206 (702)
T ss_pred CCCCCCCCCCEEEEEEEeCCEEEEEEECCCCchhhccCccCCCCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHH
Confidence 26999999999999999999999999999999999997 669999999999999999999 778999999999999999
Q ss_pred HHHhc-----------------CC-------------------------CCeEEEEeCCHHHHHHHHHHHHhccCCCCcc
Q psy19 328 ECSLS-----------------YP-------------------------HTFFVCGDINEKLVLKTQANVLHNSGNLNRE 365 (494)
Q Consensus 328 EAA~~-----------------~~-------------------------~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~ 365 (494)
|||++ |+ ...++|+|+|+.|++.|++|+..+|+ .
T Consensus 207 EAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~----~ 282 (702)
T PRK11783 207 EAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGV----A 282 (702)
T ss_pred HHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCC----C
Confidence 99985 11 12589999999999999999998876 4
Q ss_pred cceeeeeeccccccCC--CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHhc
Q psy19 366 LKVSPLVCNVRQLCFK--PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHIT 443 (494)
Q Consensus 366 ~~i~~~~~Da~~l~~~--~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~~ 443 (494)
+.+.+.++|+.+++.+ .+++|+||||||||.+++...++..+|+.+...+. ...+| |+++++|++.. +.+.++
T Consensus 283 ~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk-~~~~g-~~~~llt~~~~-l~~~~~-- 357 (702)
T PRK11783 283 ELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK-QQFGG-WNAALFSSSPE-LLSCLG-- 357 (702)
T ss_pred cceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH-HhCCC-CeEEEEeCCHH-HHHHhC--
Confidence 5678999999988543 24799999999999999988788899987554433 33377 99999999987 555554
Q ss_pred cccceeeeeEEEccCCceEEEEEEeeCCCC
Q psy19 444 SALWKCRKQIKINMSGMKSFVFILNRTADL 473 (494)
Q Consensus 444 ~~l~~~~~~~~v~~Ggl~~~i~v~~~~~~~ 473 (494)
++..+++.++||+++|+++.|+...+.
T Consensus 358 ---l~~~~~~~l~nG~l~~~l~~~~~~~~~ 384 (702)
T PRK11783 358 ---LRADKQYKLKNGALECVLKNYTIAEES 384 (702)
T ss_pred ---CCCCCCeeeecCceEEEEEEEEccccC
Confidence 577889999999999999999876553
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=294.39 Aligned_cols=237 Identities=23% Similarity=0.305 Sum_probs=201.4
Q ss_pred EEEEEEEEecCcccChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEEEecCcceeccccc---ccccc--ccccc-cccc
Q psy19 219 KFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVT---QTSLH--RRNIV-EFNI 292 (494)
Q Consensus 219 tFrV~~~~~g~~~~~s~~~~~~v~~aI~d~~~~~vdl~~pdi~i~v~l~~~~~~l~l~ls---g~sL~--~Rgy~-~~~~ 292 (494)
+|+|++++.+++.+.++.+++.+++.|... +++||+++||++|++.+.++.+++|+++. ++.++ ++++| +++|
T Consensus 85 sf~v~~~~~~~~~~~~~~~~~~ig~~i~~~-g~~v~l~~Pd~~i~v~~~~~~~~~g~~~~~~~~~~~~~~~~~~R~~~~~ 163 (329)
T TIGR01177 85 SFAVRVRDLRGYSVDKARLERKIGAILKKK-GFKVSLRRPDIVVRVVITEDIFYLGRVLEERDKEQFIERKPDRRPFFKP 163 (329)
T ss_pred eEEEEEEecCCCCCCHHHHHHHHHHHHHhc-CCccccCCCCeEEEEEEECCeEEEEEEeeecchhhhhhcCcccCCccCC
Confidence 799999988865777888888898888765 36899999999999999999999999874 34443 45554 6799
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
++|.|.+|++|++++.++++.+|||||||||+++++++.. +..++|+|+|+.|++.|+.|++.+|+ .+ +.+.+
T Consensus 164 ~~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~----~~-i~~~~ 236 (329)
T TIGR01177 164 GSMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGI----ED-FFVKR 236 (329)
T ss_pred CCCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCC----CC-CeEEe
Confidence 9999999999999999999999999999999999999887 68999999999999999999998875 22 67899
Q ss_pred eccccccCCCCCeeEEEEcCCCccccCCccc-hHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHhccccceeee
Q psy19 373 CNVRQLCFKPACVDGIVTDLPFGKRVGSKSN-NFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRK 451 (494)
Q Consensus 373 ~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~-~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~~~~l~~~~~ 451 (494)
+|+.++++.++.||+||+|||||.+.+.... ...+|..++.++.++|+|| |++++++++...+.+.+...| | ...
T Consensus 237 ~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~g-G~lv~~~~~~~~~~~~~~~~g--~-i~~ 312 (329)
T TIGR01177 237 GDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSE-GWIVYAVPTRIDLESLAEDAF--R-VVK 312 (329)
T ss_pred cchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCC-cEEEEEEcCCCCHHHHHhhcC--c-chh
Confidence 9999998777799999999999988765433 5578999999999999999 999998887655677777666 6 666
Q ss_pred eEE-EccCCceEEEEEE
Q psy19 452 QIK-INMSGMKSFVFIL 467 (494)
Q Consensus 452 ~~~-v~~Ggl~~~i~v~ 467 (494)
++. ..+++|.++|+++
T Consensus 313 ~~~~~~h~sl~r~i~v~ 329 (329)
T TIGR01177 313 RFEVRVHRSLTRHIYVA 329 (329)
T ss_pred eeeeeeecceEEEEEeC
Confidence 666 4689999999874
|
This family is found exclusively in the Archaea. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=262.27 Aligned_cols=168 Identities=33% Similarity=0.494 Sum_probs=135.0
Q ss_pred cccc-ccccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCe---------EEEEeCCHHHHHHHHHH
Q psy19 285 RNIV-EFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTF---------FVCGDINEKLVLKTQAN 354 (494)
Q Consensus 285 Rgy~-~~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~---------v~G~Did~~al~~Ar~N 354 (494)
|||| +.+++||+|++|++|+++++|++++.|+|||||||||+||||+++.... ++|+|+|+++++.|+.|
T Consensus 1 RgyR~~~~~a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N 80 (179)
T PF01170_consen 1 RGYRPFFGPAPLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGAREN 80 (179)
T ss_dssp -STTTSSSSTSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHH
T ss_pred CCCcCCCCCCCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHH
Confidence 7886 6799999999999999999999999999999999999999999987777 99999999999999999
Q ss_pred HHhccCCCCcccceeeeeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHH
Q psy19 355 VLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRK 434 (494)
Q Consensus 355 l~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~ 434 (494)
++.+|+ ...+.+.++|++++++.++++|+||||||||.|++...++..+|..|++++.++|++ +.+++++.+.
T Consensus 81 ~~~ag~----~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~--~~v~l~~~~~- 153 (179)
T PF01170_consen 81 LKAAGV----EDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP--RAVFLTTSNR- 153 (179)
T ss_dssp HHHTT-----CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT--CEEEEEESCC-
T ss_pred HHhccc----CCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC--CEEEEEECCH-
Confidence 998875 456889999999999666899999999999999998878899999999999999996 4444455444
Q ss_pred HHHHHHHhccccceeeeeEEEccCCceEEE
Q psy19 435 HLIQALHITSALWKCRKQIKINMSGMKSFV 464 (494)
Q Consensus 435 ~l~~~l~~~~~l~~~~~~~~v~~Ggl~~~i 464 (494)
.+.+.+... ..+...+.+|++.+..
T Consensus 154 ~~~~~~~~~-----~~~~~~~~~~~~~~~~ 178 (179)
T PF01170_consen 154 ELEKALGLK-----GWRKRKLYNGHISGTR 178 (179)
T ss_dssp CHHHHHTST-----TSEEEEEEETTEEEEE
T ss_pred HHHHHhcch-----hhceEEEEEecceeEE
Confidence 478887753 3456667778887664
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=263.20 Aligned_cols=219 Identities=24% Similarity=0.385 Sum_probs=179.7
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCEEEEEEEecCcceecccccc---ccc-----ccccccccccccchHHHHHHHHHHhC
Q psy19 237 SERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQ---TSL-----HRRNIVEFNITTLKPTIAYNMVRLAS 308 (494)
Q Consensus 237 ~~~~v~~aI~d~~~~~vdl~~pdi~i~v~l~~~~~~l~l~lsg---~sL-----~~Rgy~~~~~a~L~e~lAa~ll~la~ 308 (494)
++..++.++.. -+..|++.+|+..+++.+.++++++|..+.. +++ ++|+ +++|.+|.|.+|.+|++||.
T Consensus 118 le~~~~~~~~~-~~~~v~~~~p~~v~r~~~~~~~~~~G~~~~~~dr~~~~~r~~~kRP--f~~p~s~~P~lAR~mVNLa~ 194 (347)
T COG1041 118 LEKAIGGAIPS-EGLRVSLSKPDEVVRVVVTEDKVYLGLTVRERDRKAFEKRDPEKRP--FFRPGSMDPRLARAMVNLAR 194 (347)
T ss_pred hhHHhhccchh-cCceeecCCcceEEEeeeeCCEEEEEEEEEecChHHHhhcCcccCC--ccCcCCcCHHHHHHHHHHhc
Confidence 67778888766 4568999999999999999999999988763 233 3333 56899999999999999999
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEE
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGI 388 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~I 388 (494)
+++|+.|||||||||+|+|||.++ |+.++|+|++.+|++.|+.|++..++ .+..-+..+|+..+|+++.++|.|
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i----~~~~~~~~~Da~~lpl~~~~vdaI 268 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGI----EDYPVLKVLDATNLPLRDNSVDAI 268 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCc----CceeEEEecccccCCCCCCccceE
Confidence 999999999999999999999999 89999999999999999999998864 222223344999999987789999
Q ss_pred EEcCCCccccCCcc-chHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHhccccceeeeeEEE-ccCCceEEEEE
Q psy19 389 VTDLPFGKRVGSKS-NNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKI-NMSGMKSFVFI 466 (494)
Q Consensus 389 VtNPPYG~r~~~~~-~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~~~~l~~~~~~~~v-~~Ggl~~~i~v 466 (494)
+||||||.+..... .+..||.++++.+.++|++| |++++.++... ... +...+ ++....+.. .|++|.+.|++
T Consensus 269 atDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~g-G~~vf~~p~~~-~~~-~~~~~--f~v~~~~~~~~H~sLtR~i~v 343 (347)
T COG1041 269 ATDPPYGRSTKIKGEGLDELYEEALESASEVLKPG-GRIVFAAPRDP-RHE-LEELG--FKVLGRFTMRVHGSLTRVIYV 343 (347)
T ss_pred EecCCCCcccccccccHHHHHHHHHHHHHHHhhcC-cEEEEecCCcc-hhh-HhhcC--ceEEEEEEEeecCceEEEEEE
Confidence 99999998875543 46899999999999999999 99999998432 222 22233 455555544 48999999998
Q ss_pred Eee
Q psy19 467 LNR 469 (494)
Q Consensus 467 ~~~ 469 (494)
+++
T Consensus 344 ~~~ 346 (347)
T COG1041 344 VRK 346 (347)
T ss_pred Eec
Confidence 864
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.2e-20 Score=159.44 Aligned_cols=115 Identities=30% Similarity=0.423 Sum_probs=95.6
Q ss_pred CCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc--CCCCCeeEEE
Q psy19 312 GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC--FKPACVDGIV 389 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~--~~~~~~D~IV 389 (494)
|.+|||||||+|++++.++..+ ...++|+|+|+.+++.|+.|+..++. ..+++++++|+.+.. +.+++||+|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGL----DDRVEVIVGDARDLPEPLPDGKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTT----TTTEEEEESHHHHHHHTCTTT-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccC----CceEEEEECchhhchhhccCceeEEEE
Confidence 5689999999999999999986 58999999999999999999998764 456899999998885 6668999999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+||||+...........+|..|++.+.++|+|| |.+++++++
T Consensus 76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~g-G~~~~~~~~ 117 (117)
T PF13659_consen 76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPG-GVLVFITPA 117 (117)
T ss_dssp E--STTSBTT----GGCHHHHHHHHHHHHEEEE-EEEEEEEEG
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHHcCCC-eEEEEEeCC
Confidence 999999766555555668999999999999999 999999863
|
... |
| >KOG2671|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.8e-19 Score=175.20 Aligned_cols=202 Identities=21% Similarity=0.267 Sum_probs=151.3
Q ss_pred EEEEEEEEecCcccChHHHHHHHHHHHHhhc--CCCCCCCCCCEEEEEEEe----cC-------cceeccccc-c-----
Q psy19 219 KFRVTCNRVGKHTVTSMESERAFGGKLNDTY--FWLVDLDDYDIDINLQIR----YN-------EAYVGLPVT-Q----- 279 (494)
Q Consensus 219 tFrV~~~~~g~~~~~s~~~~~~v~~aI~d~~--~~~vdl~~pdi~i~v~l~----~~-------~~~l~l~ls-g----- 279 (494)
||+++....|++. +-.+..+++ +.. +.+ ..+|+|++|+.++.+.-. .+ ++++|-.+. |
T Consensus 100 sfki~fetfgk~~-t~~e~~~~I-~~f-~ylpfeG~Vnlk~Pq~~f~viE~y~~~pn~~p~~p~~IyFGr~ig~g~R~li 176 (421)
T KOG2671|consen 100 SFKIRFETFGKKL-TQDEQVEII-ESF-DYLPFEGPVNLKNPQHVFFVIEEYELDPNVGPEEPKKIYFGRLIGEGQRELI 176 (421)
T ss_pred eeEEEEEEecccc-cHHHHHHHh-hhh-eeccccceeccCCCceEEEEEEeeccCCCCCCCCcceeeehhhhccchHhHh
Confidence 8999999998652 211111111 111 222 248999999999887632 22 455665543 2
Q ss_pred --cccccccccccccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHH-------
Q psy19 280 --TSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLK------- 350 (494)
Q Consensus 280 --~sL~~Rgy~~~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~------- 350 (494)
-+|.+|.| .|+++|.+.|+-.|.++|.+++|+.|+|||.|||++++.||.. |+.++|.|||-.+++.
T Consensus 177 ~~y~LK~R~y--iGnTSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F--Ga~viGtDIDyr~vragrg~~~s 252 (421)
T KOG2671|consen 177 EKYDLKKRCY--IGNTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF--GAYVIGTDIDYRTVRAGRGEDES 252 (421)
T ss_pred hhcccccccc--cCCcccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhh--cceeeccccchheeecccCCCcc
Confidence 14667766 4899999999999999999999999999999999999999986 7999999999999983
Q ss_pred HHHHHHhccCCCCcccceeeeeeccccccCCC-CCeeEEEEcCCCccccCCc-------------------------cch
Q psy19 351 TQANVLHNSGNLNRELKVSPLVCNVRQLCFKP-ACVDGIVTDLPFGKRVGSK-------------------------SNN 404 (494)
Q Consensus 351 Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~-~~~D~IVtNPPYG~r~~~~-------------------------~~~ 404 (494)
.+.|.+.+|. ....+.++.+|+...++.. ..||.||||||||.|.+.. ..+
T Consensus 253 i~aNFkQYg~---~~~fldvl~~D~sn~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl 329 (421)
T KOG2671|consen 253 IKANFKQYGS---SSQFLDVLTADFSNPPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSL 329 (421)
T ss_pred hhHhHHHhCC---cchhhheeeecccCcchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHH
Confidence 3567776663 2345678889999877653 4799999999999885421 124
Q ss_pred HHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 405 FLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 405 ~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
..++..+|.-+.+.|..| ||+++..|
T Consensus 330 ~~~v~dll~fss~~L~~g-grlv~w~p 355 (421)
T KOG2671|consen 330 SSLVYDLLCFSSRRLVDG-GRLVFWLP 355 (421)
T ss_pred HHHHhhHHHhhHhhhhcC-ceEEEecC
Confidence 567778899999999999 99999877
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-15 Score=152.49 Aligned_cols=159 Identities=17% Similarity=0.178 Sum_probs=119.5
Q ss_pred cccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCccccee
Q psy19 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVS 369 (494)
Q Consensus 290 ~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~ 369 (494)
+-|.|=.+.|...++......+. .|||+|||||.+++.+|...+.+.|+|+|||+.|++.|++|+..+|+ .++.
T Consensus 90 liPr~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-----~~~~ 163 (280)
T COG2890 90 LIPRPDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-----VRVL 163 (280)
T ss_pred eecCCchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-----ccEE
Confidence 45888888888887744444333 79999999999999999999888999999999999999999999875 2345
Q ss_pred eeeeccccccCCCCCeeEEEEcCCCcccc-----------------CCccchHHHHHHHHHHHhhcccCCCcEEEEEec-
Q psy19 370 PLVCNVRQLCFKPACVDGIVTDLPFGKRV-----------------GSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS- 431 (494)
Q Consensus 370 ~~~~Da~~l~~~~~~~D~IVtNPPYG~r~-----------------~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~- 431 (494)
++++|++.- .. ++||+||+||||-..- -...+..++|++|+.++.++|+|| |.+++-.+
T Consensus 164 ~~~~dlf~~-~~-~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~-g~l~le~g~ 240 (280)
T COG2890 164 VVQSDLFEP-LR-GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPG-GVLILEIGL 240 (280)
T ss_pred EEeeecccc-cC-CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCC-cEEEEEECC
Confidence 666687763 33 4899999999995432 011245689999999999999998 98888666
Q ss_pred -CHHHHHHHHHhccccceeeeeEEEccC
Q psy19 432 -DRKHLIQALHITSALWKCRKQIKINMS 458 (494)
Q Consensus 432 -~~~~l~~~l~~~~~l~~~~~~~~v~~G 458 (494)
....+.+.+...+. +..........|
T Consensus 241 ~q~~~v~~~~~~~~~-~~~v~~~~d~~g 267 (280)
T COG2890 241 TQGEAVKALFEDTGF-FEIVETLKDLFG 267 (280)
T ss_pred CcHHHHHHHHHhcCC-ceEEEEEecCCC
Confidence 33457777777663 233344444433
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.7e-16 Score=144.75 Aligned_cols=113 Identities=24% Similarity=0.326 Sum_probs=92.6
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt 390 (494)
++..|||+|||+|.+++.++..++...++++|+++.|++.|++|+..+++ .. +.+.+.|+.+. .+..+||+||+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~----~~-v~~~~~d~~~~-~~~~~fD~Iv~ 104 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL----EN-VEVVQSDLFEA-LPDGKFDLIVS 104 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC----TT-EEEEESSTTTT-CCTTCEEEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc----cc-ccccccccccc-ccccceeEEEE
Confidence 67799999999999999999998888899999999999999999999875 23 78899998774 33579999999
Q ss_pred cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
||||.... .+...++..|++++.++|+|| |+++++....
T Consensus 105 NPP~~~~~---~~~~~~~~~~i~~a~~~Lk~~-G~l~lv~~~~ 143 (170)
T PF05175_consen 105 NPPFHAGG---DDGLDLLRDFIEQARRYLKPG-GRLFLVINSH 143 (170)
T ss_dssp ---SBTTS---HCHHHHHHHHHHHHHHHEEEE-EEEEEEEETT
T ss_pred ccchhccc---ccchhhHHHHHHHHHHhccCC-CEEEEEeecC
Confidence 99964322 234567889999999999999 9998876643
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-15 Score=153.56 Aligned_cols=147 Identities=17% Similarity=0.206 Sum_probs=109.9
Q ss_pred cccchHHHHHHHHH-HhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 292 ITTLKPTIAYNMVR-LASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 292 ~a~L~e~lAa~ll~-la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
|.|-.+.+....+. +....++.+|||+|||||.+++.++..+++..++|+|+++.+++.|++|+..+++ ..++.+
T Consensus 101 pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~----~~~i~~ 176 (284)
T TIGR03533 101 PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL----EDRVTL 176 (284)
T ss_pred CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEE
Confidence 44444555544443 3333445789999999999999999988888999999999999999999998765 346789
Q ss_pred eeeccccccCCCCCeeEEEEcCCCccccCC-----------------ccchHHHHHHHHHHHhhcccCCCcEEEEEecC-
Q psy19 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGS-----------------KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD- 432 (494)
Q Consensus 371 ~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~-----------------~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~- 432 (494)
+++|+.+. ++..+||+||+||||...-.. ..+...+|+.++..+.++|+|| |++++-++.
T Consensus 177 ~~~D~~~~-~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~g-G~l~~e~g~~ 254 (284)
T TIGR03533 177 IQSDLFAA-LPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNEN-GVLVVEVGNS 254 (284)
T ss_pred EECchhhc-cCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCC-CEEEEEECcC
Confidence 99998653 334589999999999643210 1134578999999999999999 999986664
Q ss_pred HHHHHHHHHhcc
Q psy19 433 RKHLIQALHITS 444 (494)
Q Consensus 433 ~~~l~~~l~~~~ 444 (494)
...+.+.+...+
T Consensus 255 ~~~v~~~~~~~~ 266 (284)
T TIGR03533 255 MEALEEAYPDVP 266 (284)
T ss_pred HHHHHHHHHhCC
Confidence 344555565544
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-15 Score=149.59 Aligned_cols=145 Identities=17% Similarity=0.195 Sum_probs=110.4
Q ss_pred HHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc--CCC
Q psy19 305 RLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC--FKP 382 (494)
Q Consensus 305 ~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~--~~~ 382 (494)
.++.+....+|||+|||+|.+++.+|.+.+.+.|.|+|+++++.+.|++|++.+++ .+++++++.|+.++. ...
T Consensus 38 ~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l----~~ri~v~~~Di~~~~~~~~~ 113 (248)
T COG4123 38 AFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL----EERIQVIEADIKEFLKALVF 113 (248)
T ss_pred hhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc----hhceeEehhhHHHhhhcccc
Confidence 44555567899999999999999999987779999999999999999999998754 678899999998883 233
Q ss_pred CCeeEEEEcCCCccccCC--ccc--------hHHHHHHHHHHHhhcccCCCcEEEEEecCHHH--HHHHHHhccccceee
Q psy19 383 ACVDGIVTDLPFGKRVGS--KSN--------NFLLYRLFLIEIGKIVRPQIGRAILLTSDRKH--LIQALHITSALWKCR 450 (494)
Q Consensus 383 ~~~D~IVtNPPYG~r~~~--~~~--------~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~--l~~~l~~~~~l~~~~ 450 (494)
.+||+|||||||...-.. ... ....+..+++.+.++|||+ |+++++.+-... +...++.++ |.+.
T Consensus 114 ~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~-G~l~~V~r~erl~ei~~~l~~~~--~~~k 190 (248)
T COG4123 114 ASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPG-GRLAFVHRPERLAEIIELLKSYN--LEPK 190 (248)
T ss_pred cccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCC-CEEEEEecHHHHHHHHHHHHhcC--CCce
Confidence 479999999999643322 111 1123557888999999999 999999886542 344455544 5555
Q ss_pred eeEEEc
Q psy19 451 KQIKIN 456 (494)
Q Consensus 451 ~~~~v~ 456 (494)
+...|+
T Consensus 191 ~i~~V~ 196 (248)
T COG4123 191 RIQFVY 196 (248)
T ss_pred EEEEec
Confidence 555554
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.7e-15 Score=154.75 Aligned_cols=160 Identities=13% Similarity=0.042 Sum_probs=120.1
Q ss_pred ccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 291 NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 291 ~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
.|.|..+.+...++... .++.+|||+|||||.+++.++...++..++|+|+|+.|++.|++|++.++. ++.+
T Consensus 233 IPRpeTE~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~------rV~f 304 (423)
T PRK14966 233 IPRPETEHLVEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA------RVEF 304 (423)
T ss_pred CCCccHHHHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------cEEE
Confidence 36777888888877643 355699999999999999998887888999999999999999999987642 4689
Q ss_pred eeeccccccCC-CCCeeEEEEcCCCccccC-----------------CccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 371 LVCNVRQLCFK-PACVDGIVTDLPFGKRVG-----------------SKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 371 ~~~Da~~l~~~-~~~~D~IVtNPPYG~r~~-----------------~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+++|+.+..++ .++||+||+||||..... ...+..++|+.+++.+.++|+|| |.+++..+.
T Consensus 305 i~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkpg-G~lilEiG~ 383 (423)
T PRK14966 305 AHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEG-GFLLLEHGF 383 (423)
T ss_pred EEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCC-cEEEEEECc
Confidence 99998764322 357999999999953211 11245578999999999999999 998886664
Q ss_pred --HHHHHHHHHhccccceeeeeEEEccCCce
Q psy19 433 --RKHLIQALHITSALWKCRKQIKINMSGMK 461 (494)
Q Consensus 433 --~~~l~~~l~~~~~l~~~~~~~~v~~Ggl~ 461 (494)
...+.+.+...+ |.....+....|.-.
T Consensus 384 ~Q~e~V~~ll~~~G--f~~v~v~kDl~G~dR 412 (423)
T PRK14966 384 DQGAAVRGVLAENG--FSGVETLPDLAGLDR 412 (423)
T ss_pred cHHHHHHHHHHHCC--CcEEEEEEcCCCCcE
Confidence 244666666655 454555555554443
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.2e-15 Score=146.91 Aligned_cols=133 Identities=17% Similarity=0.182 Sum_probs=103.0
Q ss_pred cccchHHHHHHHHHHhCC-CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 292 ITTLKPTIAYNMVRLASP-IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~-~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
|.+..+.+...++..... .++.+|||+|||||++++.++...++..++|+|+|+.|++.|++|+..++. .+
T Consensus 66 pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~--------~~ 137 (251)
T TIGR03704 66 PRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGG--------TV 137 (251)
T ss_pred CCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--------EE
Confidence 556677888777765542 234589999999999999998877778999999999999999999987642 57
Q ss_pred eeeccccc-cC-CCCCeeEEEEcCCCcccc------------------CCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 371 LVCNVRQL-CF-KPACVDGIVTDLPFGKRV------------------GSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 371 ~~~Da~~l-~~-~~~~~D~IVtNPPYG~r~------------------~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+++|+.+. +. ..+.||+||+||||-..- ....+..++|+.++..+.++|+|| |++++.+
T Consensus 138 ~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~g-G~l~l~~ 216 (251)
T TIGR03704 138 HEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPG-GHLLVET 216 (251)
T ss_pred EEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCC-CEEEEEE
Confidence 88898753 21 125799999999995211 011245667899999999999999 9999987
Q ss_pred cCH
Q psy19 431 SDR 433 (494)
Q Consensus 431 ~~~ 433 (494)
...
T Consensus 217 ~~~ 219 (251)
T TIGR03704 217 SER 219 (251)
T ss_pred Ccc
Confidence 743
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-14 Score=148.36 Aligned_cols=126 Identities=20% Similarity=0.269 Sum_probs=99.9
Q ss_pred CEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEEcC
Q psy19 313 DVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDL 392 (494)
Q Consensus 313 ~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNP 392 (494)
.+|||+|||+|.+++.++..+|+..++|+|+++.+++.|++|+..+++ ..++.++++|+.+. ++.++||+||+||
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l----~~~i~~~~~D~~~~-l~~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL----EDRVTLIESDLFAA-LPGRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC----CCcEEEEECchhhh-CCCCCccEEEECC
Confidence 689999999999999999988889999999999999999999998764 34578999998653 3345899999999
Q ss_pred CCccccC-----------------CccchHHHHHHHHHHHhhcccCCCcEEEEEec-CHHHHHHHHHhcc
Q psy19 393 PFGKRVG-----------------SKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS-DRKHLIQALHITS 444 (494)
Q Consensus 393 PYG~r~~-----------------~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~-~~~~l~~~l~~~~ 444 (494)
||...-. ...+...+|+.+++.+.++|+|| |++++-+. +...+...+...+
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pg-G~l~~E~g~~~~~~~~~~~~~~ 278 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTED-GVLVVEVGNSRVHLEEAYPDVP 278 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCC-CEEEEEECcCHHHHHHHHhhCC
Confidence 9954211 01234578999999999999999 99998665 3444555555433
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-14 Score=144.91 Aligned_cols=166 Identities=17% Similarity=0.203 Sum_probs=116.6
Q ss_pred cccchHHHHHHHHHHhC-CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 292 ITTLKPTIAYNMVRLAS-PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~-~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
|.|-.+.+...++.... ..+..+|||+|||||.+++.++..+++..++|+|+++.+++.|++|+..+++ ..++.+
T Consensus 94 Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~----~~~v~~ 169 (284)
T TIGR00536 94 PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL----EHRVEF 169 (284)
T ss_pred CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEE
Confidence 55566667666654332 2233689999999999999999988888999999999999999999998764 345789
Q ss_pred eeeccccccCCCCCeeEEEEcCCCccccC-----------------CccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVG-----------------SKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 371 ~~~Da~~l~~~~~~~D~IVtNPPYG~r~~-----------------~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
+++|+.+. ++...||+||+||||-.... ...+...+|+.++..+.++|+|| |.+++-++..
T Consensus 170 ~~~d~~~~-~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~g-G~l~~e~g~~ 247 (284)
T TIGR00536 170 IQSNLFEP-LAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPN-GFLVCEIGNW 247 (284)
T ss_pred EECchhcc-CcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCC-CEEEEEECcc
Confidence 99998763 43348999999999964321 01133468999999999999999 9998866643
Q ss_pred --HHHHHHHHhccccceeeeeEEEccCCceEEEE
Q psy19 434 --KHLIQALHITSALWKCRKQIKINMSGMKSFVF 465 (494)
Q Consensus 434 --~~l~~~l~~~~~l~~~~~~~~v~~Ggl~~~i~ 465 (494)
..+...+....+ |.....+.- ..|..+.++
T Consensus 248 q~~~~~~~~~~~~~-~~~~~~~~D-~~g~~R~~~ 279 (284)
T TIGR00536 248 QQKSLKELLRIKFT-WYDVENGRD-LNGKERVVL 279 (284)
T ss_pred HHHHHHHHHHhcCC-CceeEEecC-CCCCceEEE
Confidence 234444442222 333344443 344444443
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-14 Score=141.99 Aligned_cols=146 Identities=14% Similarity=0.114 Sum_probs=111.2
Q ss_pred ccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 291 NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 291 ~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
.|.+..+.+...++.... ..+.+|||+|||+|.+++.++..++...++|+|+++.+++.|+.|+..+++ .++.+
T Consensus 68 ~p~~~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-----~~~~~ 141 (251)
T TIGR03534 68 IPRPDTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL-----DNVTF 141 (251)
T ss_pred cCCCChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CeEEE
Confidence 455666777777766654 244689999999999999999988888999999999999999999997764 24789
Q ss_pred eeeccccccCCCCCeeEEEEcCCCccccCC------------------ccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGS------------------KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 371 ~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~------------------~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
.++|+.+ +++.++||+|++||||...... ..+....|..+++.+.++|+|| |.+++..+.
T Consensus 142 ~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~g-G~~~~~~~~ 219 (251)
T TIGR03534 142 LQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPG-GWLLLEIGY 219 (251)
T ss_pred EECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccC-CEEEEEECc
Confidence 9999877 3445789999999999742110 0112345778999999999999 999887653
Q ss_pred H--HHHHHHHHhcc
Q psy19 433 R--KHLIQALHITS 444 (494)
Q Consensus 433 ~--~~l~~~l~~~~ 444 (494)
. ..+.+.+.+.+
T Consensus 220 ~~~~~~~~~l~~~g 233 (251)
T TIGR03534 220 DQGEAVRALFEAAG 233 (251)
T ss_pred cHHHHHHHHHHhCC
Confidence 2 33555666544
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.7e-14 Score=140.77 Aligned_cols=148 Identities=14% Similarity=0.110 Sum_probs=114.0
Q ss_pred cccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCccccee
Q psy19 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVS 369 (494)
Q Consensus 290 ~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~ 369 (494)
+.|.+..+.+...++......++.+|||+|||+|.+++.++...+...++|+|+++.+++.|++|+. .+. ..++.
T Consensus 87 lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~----~~~i~ 161 (275)
T PRK09328 87 LIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGL----GARVE 161 (275)
T ss_pred eeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCC----CCcEE
Confidence 3467777888888876666667789999999999999999988888899999999999999999998 221 24578
Q ss_pred eeeeccccccCCCCCeeEEEEcCCCccccC------------------CccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 370 PLVCNVRQLCFKPACVDGIVTDLPFGKRVG------------------SKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 370 ~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~------------------~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+.++|+... +..++||+||+||||..... ...+...+|..+++.+.++|+|| |.+++.++
T Consensus 162 ~~~~d~~~~-~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~g-G~l~~e~g 239 (275)
T PRK09328 162 FLQGDWFEP-LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPG-GWLLLEIG 239 (275)
T ss_pred EEEccccCc-CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccC-CEEEEEEC
Confidence 899998653 23468999999999964311 01234578899999999999999 99988765
Q ss_pred CH--HHHHHHHHhcc
Q psy19 432 DR--KHLIQALHITS 444 (494)
Q Consensus 432 ~~--~~l~~~l~~~~ 444 (494)
.. ..+...+...+
T Consensus 240 ~~~~~~~~~~l~~~g 254 (275)
T PRK09328 240 YDQGEAVRALLAAAG 254 (275)
T ss_pred chHHHHHHHHHHhCC
Confidence 32 33555565544
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.1e-14 Score=154.48 Aligned_cols=163 Identities=13% Similarity=0.111 Sum_probs=119.3
Q ss_pred cccccchHHHHHHHHHHhC------------------------CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCH
Q psy19 290 FNITTLKPTIAYNMVRLAS------------------------PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINE 345 (494)
Q Consensus 290 ~~~a~L~e~lAa~ll~la~------------------------~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~ 345 (494)
.-|-|-.|.|...++.... ..++.+|||+|||||.+++.++...++..++|+|+|+
T Consensus 93 LIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~ 172 (506)
T PRK01544 93 LIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPNANVIATDISL 172 (506)
T ss_pred ccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCH
Confidence 4577778888877765421 1134689999999999999998888888999999999
Q ss_pred HHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEEcCCCccccC------------------CccchHHH
Q psy19 346 KLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVG------------------SKSNNFLL 407 (494)
Q Consensus 346 ~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~------------------~~~~~~~l 407 (494)
.|++.|+.|+..+++ .+++.++++|+... +..+.||+||+||||..... ...+....
T Consensus 173 ~al~~A~~N~~~~~l----~~~v~~~~~D~~~~-~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~ 247 (506)
T PRK01544 173 DAIEVAKSNAIKYEV----TDRIQIIHSNWFEN-IEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQA 247 (506)
T ss_pred HHHHHHHHHHHHcCC----ccceeeeecchhhh-CcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHH
Confidence 999999999997764 34678899998653 33458999999999964321 11234578
Q ss_pred HHHHHHHHhhcccCCCcEEEEEecC--HHHHHHHHHhccccceeeeeEEEccCCc
Q psy19 408 YRLFLIEIGKIVRPQIGRAILLTSD--RKHLIQALHITSALWKCRKQIKINMSGM 460 (494)
Q Consensus 408 y~~fL~~l~rvLkpg~G~lvllt~~--~~~l~~~l~~~~~l~~~~~~~~v~~Ggl 460 (494)
|+.++..+.++|+|| |.+++.++. ...+...+...+ |.....+.-..|..
T Consensus 248 ~~~il~~a~~~L~~g-G~l~lEig~~q~~~v~~~~~~~g--~~~~~~~~D~~g~~ 299 (506)
T PRK01544 248 YFIIAENAKQFLKPN-GKIILEIGFKQEEAVTQIFLDHG--YNIESVYKDLQGHS 299 (506)
T ss_pred HHHHHHHHHHhccCC-CEEEEEECCchHHHHHHHHHhcC--CCceEEEecCCCCc
Confidence 999999999999999 999886653 233455555544 45444444444443
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=151.86 Aligned_cols=151 Identities=14% Similarity=0.109 Sum_probs=118.0
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc----CCCCCe
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHT-FFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC----FKPACV 385 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~-~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~----~~~~~~ 385 (494)
.|.+|||+||.||++++.||.. |+ .++++|++..+++.|++|++.||+. ..++.++++|++++- -...+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~---~~~~~~i~~Dvf~~l~~~~~~g~~f 291 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLD---GDRHRFIVGDVFKWLRKAERRGEKF 291 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCC---ccceeeehhhHHHHHHHHHhcCCcc
Confidence 4899999999999999999987 56 9999999999999999999999873 345789999998871 123489
Q ss_pred eEEEEcCC-CccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH----HHHHHHHHhccccceeeeeEEEccCCc
Q psy19 386 DGIVTDLP-FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR----KHLIQALHITSALWKCRKQIKINMSGM 460 (494)
Q Consensus 386 D~IVtNPP-YG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~----~~l~~~l~~~~~l~~~~~~~~v~~Ggl 460 (494)
|+||+||| |+..-....+...-|..++..+.++|+|| |.+++.|+.. ..|.+.+.+... ..
T Consensus 292 DlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pg-G~l~~~s~~~~~~~~~f~~~i~~a~~-------------~~ 357 (393)
T COG1092 292 DLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPG-GTLVTSSCSRHFSSDLFLEIIARAAA-------------AA 357 (393)
T ss_pred cEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCC-CEEEEEecCCccCHHHHHHHHHHHHH-------------hc
Confidence 99999999 66544333456778999999999999999 9999998843 334444443210 12
Q ss_pred eEEEEEEeeCCCCCCCcccC
Q psy19 461 KSFVFILNRTADLFDYAIHG 480 (494)
Q Consensus 461 ~~~i~v~~~~~~~~d~~~~~ 480 (494)
...+.++....|++|||+..
T Consensus 358 ~~~~~~~~~~~~~~D~p~~~ 377 (393)
T COG1092 358 GRRAQEIEGEGQPPDHPRNA 377 (393)
T ss_pred CCcEEEeeccCCCCCccccc
Confidence 23455667899999999864
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=152.53 Aligned_cols=152 Identities=15% Similarity=0.085 Sum_probs=112.3
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc--C--CCCCee
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC--F--KPACVD 386 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~--~--~~~~~D 386 (494)
++.+|||+|||||++++.++.. ....|+++|+++.+++.|++|+..++++. .+++++++|+++.- + ..++||
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~---~~v~~i~~D~~~~l~~~~~~~~~fD 295 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDL---SKAEFVRDDVFKLLRTYRDRGEKFD 295 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCC---CcEEEEEccHHHHHHHHHhcCCCCC
Confidence 5789999999999999988764 23589999999999999999999987521 35789999998752 2 235899
Q ss_pred EEEEcCCCccccCC-ccchHHHHHHHHHHHhhcccCCCcEEEEEecC----HHHHHHHHHhccccceeeeeEEEccCCce
Q psy19 387 GIVTDLPFGKRVGS-KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD----RKHLIQALHITSALWKCRKQIKINMSGMK 461 (494)
Q Consensus 387 ~IVtNPPYG~r~~~-~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~----~~~l~~~l~~~~~l~~~~~~~~v~~Ggl~ 461 (494)
+||+||||...... ......-|..++..+.++|+|| |.+++.+++ .+.|.+.+.+... ...
T Consensus 296 lVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~g-G~lv~~scs~~~~~~~f~~~v~~aa~-------------~~~ 361 (396)
T PRK15128 296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPG-GILLTFSCSGLMTSDLFQKIIADAAI-------------DAG 361 (396)
T ss_pred EEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEEeCCCcCCHHHHHHHHHHHHH-------------HcC
Confidence 99999998543211 1122334888888999999999 998887764 3445555543221 122
Q ss_pred EEEEEEeeCCCCCCCcccC
Q psy19 462 SFVFILNRTADLFDYAIHG 480 (494)
Q Consensus 462 ~~i~v~~~~~~~~d~~~~~ 480 (494)
+.+.++.+..|++|||...
T Consensus 362 ~~~~~l~~~~~~~DhP~~~ 380 (396)
T PRK15128 362 RDVQFIEQFRQAADHPVIA 380 (396)
T ss_pred CeEEEEEEcCCCCCCCCCC
Confidence 4567778899999999843
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.2e-14 Score=148.49 Aligned_cols=124 Identities=14% Similarity=0.132 Sum_probs=95.7
Q ss_pred HHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC
Q psy19 302 NMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK 381 (494)
Q Consensus 302 ~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~ 381 (494)
.|+.......+.+|||+|||+|.+++.++..+|...|+++|+++.|++.|++|++.++.. ...++++...|+... ..
T Consensus 219 llL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~--~~~~v~~~~~D~l~~-~~ 295 (378)
T PRK15001 219 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE--ALDRCEFMINNALSG-VE 295 (378)
T ss_pred HHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc--cCceEEEEEcccccc-CC
Confidence 345544444456999999999999999999999999999999999999999999887632 113567888887653 23
Q ss_pred CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 382 PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 382 ~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
..+||+|++||||....... ..+..+++..+.++|+|| |+++++...
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~---~~ia~~l~~~a~~~LkpG-G~L~iV~nr 342 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALT---DNVAWEMFHHARRCLKIN-GELYIVANR 342 (378)
T ss_pred CCCEEEEEECcCcccCccCC---HHHHHHHHHHHHHhcccC-CEEEEEEec
Confidence 35899999999996432111 233457888999999999 999998643
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.7e-14 Score=137.38 Aligned_cols=133 Identities=16% Similarity=0.140 Sum_probs=100.6
Q ss_pred ccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 291 NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 291 ~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
.|..-...++..+ ......++.+|||+|||+|.+++.++... ...++|+|+++.+++.|++|+..+++ .+.+
T Consensus 17 ~p~~ds~~l~~~l-~~~~~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~------~~~~ 88 (223)
T PRK14967 17 RPQEDTQLLADAL-AAEGLGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAGV------DVDV 88 (223)
T ss_pred CCCCcHHHHHHHH-HhcccCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhCC------eeEE
Confidence 3444444555443 34456778899999999999999988762 24899999999999999999987654 2567
Q ss_pred eeeccccccCCCCCeeEEEEcCCCccccCC-------------ccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGS-------------KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 371 ~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~-------------~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
+++|+... +++++||+|++||||...... ..+...++..++.++.++|+|| |+++++.+..
T Consensus 89 ~~~d~~~~-~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~g-G~l~~~~~~~ 162 (223)
T PRK14967 89 RRGDWARA-VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPG-GSLLLVQSEL 162 (223)
T ss_pred EECchhhh-ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCC-cEEEEEEecc
Confidence 88898764 345689999999999754221 1233456788999999999999 9999876654
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-14 Score=140.20 Aligned_cols=115 Identities=24% Similarity=0.357 Sum_probs=97.4
Q ss_pred HHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC
Q psy19 302 NMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK 381 (494)
Q Consensus 302 ~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~ 381 (494)
.++.+.+..+|..|||+|||||-+++..+...+.+.|+|+|+++.|++.|++.+...+. .. ++++++||.++|++
T Consensus 42 ~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~----~~-i~fv~~dAe~LPf~ 116 (238)
T COG2226 42 ALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV----QN-VEFVVGDAENLPFP 116 (238)
T ss_pred HHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCc----cc-eEEEEechhhCCCC
Confidence 34555566689999999999999999999887678999999999999999999986553 33 78999999999999
Q ss_pred CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 382 PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 382 ~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+++||+|.+. ||.|.-.. +...|+++.|+|||| |+++++-
T Consensus 117 D~sFD~vt~~--fglrnv~d------~~~aL~E~~RVlKpg-G~~~vle 156 (238)
T COG2226 117 DNSFDAVTIS--FGLRNVTD------IDKALKEMYRVLKPG-GRLLVLE 156 (238)
T ss_pred CCccCEEEee--ehhhcCCC------HHHHHHHHHHhhcCC-eEEEEEE
Confidence 9999999883 67665432 668888999999999 9988863
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-14 Score=148.14 Aligned_cols=173 Identities=20% Similarity=0.236 Sum_probs=110.6
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhc-------CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcc
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS-------YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRE 365 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~-------~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~ 365 (494)
..++..++..|+.++...++.+|+||+||+|+|++++... .+...++|+|+++.++..|+.|+...+.. .
T Consensus 28 ~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~---~ 104 (311)
T PF02384_consen 28 FYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID---N 104 (311)
T ss_dssp C---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH---C
T ss_pred eehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc---c
Confidence 3356778888999999888999999999999999998863 24678999999999999999999876541 1
Q ss_pred cceeeeeeccccccCC--CCCeeEEEEcCCCccc--cCCc----c-------chHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 366 LKVSPLVCNVRQLCFK--PACVDGIVTDLPFGKR--VGSK----S-------NNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 366 ~~i~~~~~Da~~l~~~--~~~~D~IVtNPPYG~r--~~~~----~-------~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
....+..+|....+.. ...||+||+|||||.. .... . .-....-.|+..+.+.|+++ |++++++
T Consensus 105 ~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~-G~~~~Il 183 (311)
T PF02384_consen 105 SNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPG-GRAAIIL 183 (311)
T ss_dssp BGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred ccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccc-cceeEEe
Confidence 2235778887766432 3689999999999876 1110 0 00111224888999999999 9999998
Q ss_pred cCHHH--------HHHHHHhccccceeeeeEEE-----ccCCceEEEEEEeeCCC
Q psy19 431 SDRKH--------LIQALHITSALWKCRKQIKI-----NMSGMKSFVFILNRTAD 472 (494)
Q Consensus 431 ~~~~~--------l~~~l~~~~~l~~~~~~~~v-----~~Ggl~~~i~v~~~~~~ 472 (494)
|+..+ +++.+-+.. .....+.+ .+-+..+.|.++.+...
T Consensus 184 p~~~L~~~~~~~~iR~~ll~~~---~i~aVI~Lp~~~F~~t~v~t~ilil~k~~~ 235 (311)
T PF02384_consen 184 PNGFLFSSSSEKKIRKYLLENG---YIEAVISLPSNLFKPTGVPTSILILNKKKP 235 (311)
T ss_dssp EHHHHHGSTHHHHHHHHHHHHE---EEEEEEE--TTSSSSSSS-EEEEEEEESSS
T ss_pred cchhhhccchHHHHHHHHHhhc---hhhEEeecccceecccCcCceEEEEeeccc
Confidence 86432 222222221 12222222 34567788888877664
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-13 Score=129.36 Aligned_cols=125 Identities=18% Similarity=0.161 Sum_probs=95.8
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
.++.+|||+|||+|.+++.++...+ .++|+|+++.+++.|++|+..++. .+.+..+|+.+.. .++||+|+
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~d~~~~~--~~~fD~Vi 87 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNV------GLDVVMTDLFKGV--RGKFDVIL 87 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCC------ceEEEEccccccc--CCcccEEE
Confidence 4567899999999999999988743 899999999999999999987653 2578889987653 35899999
Q ss_pred EcCCCccccCCc-------------cchHHHHHHHHHHHhhcccCCCcEEEEEecCH---HHHHHHHHhccc
Q psy19 390 TDLPFGKRVGSK-------------SNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR---KHLIQALHITSA 445 (494)
Q Consensus 390 tNPPYG~r~~~~-------------~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~---~~l~~~l~~~~~ 445 (494)
+||||....... .+...++..+++++.++|+|| |+++++.+.. ..+...+.+.|.
T Consensus 88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g-G~~~~~~~~~~~~~~~~~~l~~~gf 158 (179)
T TIGR00537 88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEG-GRVQLIQSSLNGEPDTFDKLDERGF 158 (179)
T ss_pred ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCC-CEEEEEEeccCChHHHHHHHHhCCC
Confidence 999996332110 123456788999999999999 9998876532 234555665553
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.5e-14 Score=132.06 Aligned_cols=96 Identities=20% Similarity=0.255 Sum_probs=78.2
Q ss_pred chHHHHHHHHHHhC---CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 295 LKPTIAYNMVRLAS---PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 295 L~e~lAa~ll~la~---~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
..+.+|+.++..+. .-.|.+|+|+|||||.+++.++...+ .+|+|+|+|+++++.+++|+... ...+.+.
T Consensus 26 Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l------~g~v~f~ 98 (198)
T COG2263 26 TPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEEL------LGDVEFV 98 (198)
T ss_pred CChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhh------CCceEEE
Confidence 44555666665553 23577899999999999999999864 68999999999999999999973 3457899
Q ss_pred eeccccccCCCCCeeEEEEcCCCccccCC
Q psy19 372 VCNVRQLCFKPACVDGIVTDLPFGKRVGS 400 (494)
Q Consensus 372 ~~Da~~l~~~~~~~D~IVtNPPYG~r~~~ 400 (494)
.+|+.+.. +.+|.+|+|||||.+...
T Consensus 99 ~~dv~~~~---~~~dtvimNPPFG~~~rh 124 (198)
T COG2263 99 VADVSDFR---GKFDTVIMNPPFGSQRRH 124 (198)
T ss_pred EcchhhcC---CccceEEECCCCcccccc
Confidence 99999864 578999999999988543
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-13 Score=137.36 Aligned_cols=119 Identities=18% Similarity=0.254 Sum_probs=94.1
Q ss_pred HHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCC
Q psy19 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKP 382 (494)
Q Consensus 303 ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~ 382 (494)
++.-.....+..|+|.|||.|.|++.+|...|...++.+|+|..||+.|++|+..|++. .. .+...|..+- ..
T Consensus 150 Ll~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~----~~-~v~~s~~~~~-v~- 222 (300)
T COG2813 150 LLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE----NT-EVWASNLYEP-VE- 222 (300)
T ss_pred HHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC----cc-EEEEeccccc-cc-
Confidence 34434444555999999999999999999999999999999999999999999998752 11 4666676553 33
Q ss_pred CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 383 ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 383 ~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
++||+|||||||...... ...+-.+++..+.+.|++| |.++++...
T Consensus 223 ~kfd~IisNPPfh~G~~v---~~~~~~~~i~~A~~~L~~g-GeL~iVan~ 268 (300)
T COG2813 223 GKFDLIISNPPFHAGKAV---VHSLAQEIIAAAARHLKPG-GELWIVANR 268 (300)
T ss_pred ccccEEEeCCCccCCcch---hHHHHHHHHHHHHHhhccC-CEEEEEEcC
Confidence 389999999999754332 3344567888999999999 999998773
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-13 Score=155.52 Aligned_cols=154 Identities=14% Similarity=0.027 Sum_probs=113.1
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-CCCCCeeEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-FKPACVDGIV 389 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~~~~~~D~IV 389 (494)
.|.+|||+|||||++++.+|... ...|+++|+++.+++.|++|+..+|++ ..++.++++|+.+.. ....+||+||
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~---~~~v~~i~~D~~~~l~~~~~~fDlIi 613 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLS---GRQHRLIQADCLAWLKEAREQFDLIF 613 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC---ccceEEEEccHHHHHHHcCCCcCEEE
Confidence 57899999999999999999862 246999999999999999999998762 136789999987742 1135899999
Q ss_pred EcCCCccccCC---ccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHhccccceeeeeEEEccCCceEEEEE
Q psy19 390 TDLPFGKRVGS---KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFI 466 (494)
Q Consensus 390 tNPPYG~r~~~---~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~~~~l~~~~~~~~v~~Ggl~~~i~v 466 (494)
+||||-..... ..+....|..++..+.++|+|| |.+++.++... +...... + ...| ..+.+
T Consensus 614 lDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~g-G~l~~~~~~~~-~~~~~~~----~--------~~~g--~~~~~ 677 (702)
T PRK11783 614 IDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPG-GTLYFSNNKRG-FKMDEEG----L--------AKLG--LKAEE 677 (702)
T ss_pred ECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCC-CEEEEEeCCcc-CChhHHH----H--------HhCC--CeEEE
Confidence 99998543211 1234566888999999999999 98877666432 2211111 0 0112 35667
Q ss_pred EeeCCCCCCCcccCccCC
Q psy19 467 LNRTADLFDYAIHGLKEK 484 (494)
Q Consensus 467 ~~~~~~~~d~~~~~~~~~ 484 (494)
+.+..+++|||...+.|.
T Consensus 678 i~~~~~~~Dhp~~~~~~~ 695 (702)
T PRK11783 678 ITAKTLPPDFARNPKIHN 695 (702)
T ss_pred EecCCCCCCCCCCcccce
Confidence 788999999999877653
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.3e-14 Score=137.81 Aligned_cols=135 Identities=13% Similarity=0.109 Sum_probs=93.8
Q ss_pred ceecccccccccccccc--cccccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcC---CCCeEEEEeCCH
Q psy19 271 AYVGLPVTQTSLHRRNI--VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY---PHTFFVCGDINE 345 (494)
Q Consensus 271 ~~l~l~lsg~sL~~Rgy--~~~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~---~~~~v~G~Did~ 345 (494)
.++.-...+..++.+.. .|++|.+ +|..++.. ...+.+|||||||||.|++.++... +...|+|+|+|+
T Consensus 13 ~f~~~n~~~~~~~~~~~~GqFfTP~~----iAr~~~i~--~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~ 86 (241)
T PHA03412 13 LFIIENFHEGAFTNNSELGAFFTPIG----LARDFTID--ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNH 86 (241)
T ss_pred HHHHhhcccccccccccCCccCCCHH----HHHHHHHh--ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCH
Confidence 33333344445544322 4676665 45544322 2246799999999999999888652 346899999999
Q ss_pred HHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEEcCCCccccCCc----cchHHHHHHHHHHHhhcccC
Q psy19 346 KLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSK----SNNFLLYRLFLIEIGKIVRP 421 (494)
Q Consensus 346 ~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~----~~~~~ly~~fL~~l~rvLkp 421 (494)
.|++.|++|+.. +.++++|+...++ +++||+||+||||+...... .+...+...|++.+.+++++
T Consensus 87 ~Al~~Ar~n~~~----------~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~ 155 (241)
T PHA03412 87 TYYKLGKRIVPE----------ATWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQ 155 (241)
T ss_pred HHHHHHHhhccC----------CEEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCC
Confidence 999999998641 3688899987654 36899999999998643211 12235677788899997776
Q ss_pred C
Q psy19 422 Q 422 (494)
Q Consensus 422 g 422 (494)
|
T Consensus 156 G 156 (241)
T PHA03412 156 G 156 (241)
T ss_pred C
Confidence 5
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.6e-13 Score=123.36 Aligned_cols=133 Identities=22% Similarity=0.243 Sum_probs=98.8
Q ss_pred HHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCC
Q psy19 305 RLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPAC 384 (494)
Q Consensus 305 ~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~ 384 (494)
......++.+|||+|||+|.+++.++.. +..++|+|+++.+++.+++|+..++... ..+.+.++|+.+. +....
T Consensus 17 ~~~~~~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~---~~~~~~~~d~~~~-~~~~~ 90 (188)
T PRK14968 17 ENAVDKKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRN---NGVEVIRSDLFEP-FRGDK 90 (188)
T ss_pred HhhhccCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCC---cceEEEecccccc-ccccC
Confidence 3333467889999999999999998887 6899999999999999999998776411 1167888888763 34458
Q ss_pred eeEEEEcCCCccccC-------------CccchHHHHHHHHHHHhhcccCCCcEEEEEecC---HHHHHHHHHhcc
Q psy19 385 VDGIVTDLPFGKRVG-------------SKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD---RKHLIQALHITS 444 (494)
Q Consensus 385 ~D~IVtNPPYG~r~~-------------~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~---~~~l~~~l~~~~ 444 (494)
||+|++||||...-. ...+....+..+++++.++|+|| |.++++.++ ...+...+.+.|
T Consensus 91 ~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~g-G~~~~~~~~~~~~~~l~~~~~~~g 165 (188)
T PRK14968 91 FDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPG-GRILLLQSSLTGEDEVLEYLEKLG 165 (188)
T ss_pred ceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCC-eEEEEEEcccCCHHHHHHHHHHCC
Confidence 999999999964211 01122445778899999999999 988887664 234555666555
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=118.17 Aligned_cols=111 Identities=19% Similarity=0.234 Sum_probs=86.4
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecc-ccccCCCCCeeEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNV-RQLCFKPACVDGIV 389 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da-~~l~~~~~~~D~IV 389 (494)
|+.+|||+|||+|.++++++..+++.+++|+|+++.+++.|++|+...+. ..++.++++|+ ...... ..||+|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~-~~~D~v~ 75 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL----SDRITFVQGDAEFDPDFL-EPFDLVI 75 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT----TTTEEEEESCCHGGTTTS-SCEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEECccccCcccC-CCCCEEE
Confidence 57899999999999999999977899999999999999999999965543 56789999999 333332 5799999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
++- +....-. .. +-...+++.+.+.|+|| |++++-++
T Consensus 76 ~~~-~~~~~~~--~~-~~~~~~l~~~~~~L~pg-G~lvi~~~ 112 (112)
T PF12847_consen 76 CSG-FTLHFLL--PL-DERRRVLERIRRLLKPG-GRLVINTC 112 (112)
T ss_dssp ECS-GSGGGCC--HH-HHHHHHHHHHHHHEEEE-EEEEEEE-
T ss_pred ECC-Ccccccc--ch-hHHHHHHHHHHHhcCCC-cEEEEEEC
Confidence 976 4211111 11 33456778899999999 99888653
|
... |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.9e-13 Score=139.13 Aligned_cols=111 Identities=14% Similarity=0.198 Sum_probs=90.5
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
....+|||+|||+|.+++.++..+|...++++|+++.|++.|++|++.+++. ..+...|+... . .+.||+||
T Consensus 195 ~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~------~~~~~~D~~~~-~-~~~fDlIv 266 (342)
T PRK09489 195 HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE------GEVFASNVFSD-I-KGRFDMII 266 (342)
T ss_pred cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC------CEEEEcccccc-c-CCCccEEE
Confidence 3445899999999999999999888889999999999999999999987652 24667777652 2 46899999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+||||...... .......|++++.++|+|| |+++++...
T Consensus 267 sNPPFH~g~~~---~~~~~~~~i~~a~~~Lkpg-G~L~iVan~ 305 (342)
T PRK09489 267 SNPPFHDGIQT---SLDAAQTLIRGAVRHLNSG-GELRIVANA 305 (342)
T ss_pred ECCCccCCccc---cHHHHHHHHHHHHHhcCcC-CEEEEEEeC
Confidence 99999753322 2345678899999999999 999998764
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.4e-13 Score=153.72 Aligned_cols=185 Identities=16% Similarity=0.102 Sum_probs=131.2
Q ss_pred ccccccchHHHHHHHHHHhCCC--CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCC----
Q psy19 289 EFNITTLKPTIAYNMVRLASPI--PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNL---- 362 (494)
Q Consensus 289 ~~~~a~L~e~lAa~ll~la~~~--~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~---- 362 (494)
.+-|.+-.++++.. +...... ++.+|||+|||||.+++.++..++...++|+|+++.|++.|++|+..++++.
T Consensus 95 VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~ 173 (1082)
T PLN02672 95 IFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLP 173 (1082)
T ss_pred cccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccc
Confidence 35577888889888 4332111 2468999999999999999999888899999999999999999999875420
Q ss_pred -------CcccceeeeeeccccccCC-CCCeeEEEEcCCCcccc----------------------------C--Cccch
Q psy19 363 -------NRELKVSPLVCNVRQLCFK-PACVDGIVTDLPFGKRV----------------------------G--SKSNN 404 (494)
Q Consensus 363 -------~~~~~i~~~~~Da~~l~~~-~~~~D~IVtNPPYG~r~----------------------------~--~~~~~ 404 (494)
...+++.++++|+.+.... ...||+||+||||-..- + ...+.
T Consensus 174 ~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dG 253 (1082)
T PLN02672 174 VYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFG 253 (1082)
T ss_pred ccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcH
Confidence 1224689999998875311 13699999999994211 0 01456
Q ss_pred HHHHHHHHHHHhhcccCCCcEEEEEecCH--HHHH-HHHHhccccceeeeeEEEccCCceEEEEEEeeCCCCCCCcccCc
Q psy19 405 FLLYRLFLIEIGKIVRPQIGRAILLTSDR--KHLI-QALHITSALWKCRKQIKINMSGMKSFVFILNRTADLFDYAIHGL 481 (494)
Q Consensus 405 ~~ly~~fL~~l~rvLkpg~G~lvllt~~~--~~l~-~~l~~~~~l~~~~~~~~v~~Ggl~~~i~v~~~~~~~~d~~~~~~ 481 (494)
..+|++++.++.++|+|| |.+++-.+.. ..+. +.+...| .......-.+.-|..|-....+
T Consensus 254 L~~yr~i~~~a~~~L~pg-G~l~lEiG~~q~~~v~~~l~~~~g---------------f~~~~~~~~~~~~~~~~~~~~~ 317 (1082)
T PLN02672 254 LGLIARAVEEGISVIKPM-GIMIFNMGGRPGQAVCERLFERRG---------------FRITKLWQTKINQAADTDISAL 317 (1082)
T ss_pred HHHHHHHHHHHHHhccCC-CEEEEEECccHHHHHHHHHHHHCC---------------CCeeEEeeehhhhccccchHHH
Confidence 789999999999999999 9999866643 2244 3444333 2222223345566777777777
Q ss_pred cCCCCCCCC
Q psy19 482 KEKHKGKPF 490 (494)
Q Consensus 482 ~~~~~~~~~ 490 (494)
++-+|.-||
T Consensus 318 ~~~~~~~~~ 326 (1082)
T PLN02672 318 VEIEKNSRH 326 (1082)
T ss_pred HHHhhcCcc
Confidence 777765443
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-12 Score=124.86 Aligned_cols=145 Identities=13% Similarity=0.135 Sum_probs=109.3
Q ss_pred HHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCC
Q psy19 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKP 382 (494)
Q Consensus 303 ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~ 382 (494)
+.......++.+|||+|||+|.+++.++..+++++|+|+|+++.+++.|++|++.+++ . .+.+.++|+.+++. .
T Consensus 37 l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l----~-~i~~~~~d~~~~~~-~ 110 (187)
T PRK00107 37 LAIAPYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL----K-NVTVVHGRAEEFGQ-E 110 (187)
T ss_pred HHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC----C-CEEEEeccHhhCCC-C
Confidence 3333344568899999999999999999888889999999999999999999998764 2 27899999988766 5
Q ss_pred CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH--HHHHHHHHhccccceeeeeEEEccCCc
Q psy19 383 ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR--KHLIQALHITSALWKCRKQIKINMSGM 460 (494)
Q Consensus 383 ~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~--~~l~~~l~~~~~l~~~~~~~~v~~Ggl 460 (494)
++||+|++|- .. + +..+++.+.++|+|| |+++++.+.. ..+..+....| |.....+.....|+
T Consensus 111 ~~fDlV~~~~-----~~---~----~~~~l~~~~~~LkpG-G~lv~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~ 175 (187)
T PRK00107 111 EKFDVVTSRA-----VA---S----LSDLVELCLPLLKPG-GRFLALKGRDPEEEIAELPKALG--GKVEEVIELTLPGL 175 (187)
T ss_pred CCccEEEEcc-----cc---C----HHHHHHHHHHhcCCC-eEEEEEeCCChHHHHHHHHHhcC--ceEeeeEEEecCCC
Confidence 7899999972 11 1 456777899999999 9999886653 22444444444 56677777666666
Q ss_pred --eEEEEEEe
Q psy19 461 --KSFVFILN 468 (494)
Q Consensus 461 --~~~i~v~~ 468 (494)
+.++.+++
T Consensus 176 ~~~~~~~~~~ 185 (187)
T PRK00107 176 DGERHLVIIR 185 (187)
T ss_pred CCcEEEEEEe
Confidence 34555554
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-13 Score=134.06 Aligned_cols=113 Identities=23% Similarity=0.366 Sum_probs=79.7
Q ss_pred HHHHhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC
Q psy19 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK 381 (494)
Q Consensus 303 ll~la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~ 381 (494)
++.+....+|.+|||+|||||.+.++++.. .+...|+|+|+++.|++.|++.+...+. .+++++++|+.++|++
T Consensus 39 ~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~-----~~i~~v~~da~~lp~~ 113 (233)
T PF01209_consen 39 LIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL-----QNIEFVQGDAEDLPFP 113 (233)
T ss_dssp HHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-------SEEEEE-BTTB--S-
T ss_pred HHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC-----CCeeEEEcCHHHhcCC
Confidence 344556778999999999999999988765 4567999999999999999999987653 2689999999999999
Q ss_pred CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 382 PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 382 ~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+++||+|++ -||.+.-. + ..+.++++.|+|||| |+++++
T Consensus 114 d~sfD~v~~--~fglrn~~--d----~~~~l~E~~RVLkPG-G~l~il 152 (233)
T PF01209_consen 114 DNSFDAVTC--SFGLRNFP--D----RERALREMYRVLKPG-GRLVIL 152 (233)
T ss_dssp TT-EEEEEE--ES-GGG-S--S----HHHHHHHHHHHEEEE-EEEEEE
T ss_pred CCceeEEEH--HhhHHhhC--C----HHHHHHHHHHHcCCC-eEEEEe
Confidence 999999998 35554322 2 456788999999999 998876
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.3e-13 Score=135.52 Aligned_cols=144 Identities=15% Similarity=0.184 Sum_probs=104.0
Q ss_pred CcceecccccccccccccccccccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHH
Q psy19 269 NEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLV 348 (494)
Q Consensus 269 ~~~~l~l~lsg~sL~~Rgy~~~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al 348 (494)
+.-.|+-...|..+|.|| .|++|.++ +..++ .....+.+|||+|||+|.+++.++...++..++|+|+++.|+
T Consensus 29 ~~~~v~~~~~g~~~~~~G-~FfTP~~i----~~~f~--~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al 101 (279)
T PHA03411 29 EKEFCYNNYHGDGLGGSG-AFFTPEGL----AWDFT--IDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFA 101 (279)
T ss_pred cHHHHHHhcccccccCce-eEcCCHHH----HHHHH--hccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 445566667777788876 35666555 43332 233456799999999999998887765567999999999999
Q ss_pred HHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEEcCCCccccCCccch-----------HHH-HHHHHHHHh
Q psy19 349 LKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNN-----------FLL-YRLFLIEIG 416 (494)
Q Consensus 349 ~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~-----------~~l-y~~fL~~l~ 416 (494)
+.|++|+. .+.++++|+.++.. ..+||+||+||||+..-...... ..+ +..++....
T Consensus 102 ~~Ar~n~~----------~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~ 170 (279)
T PHA03411 102 RIGKRLLP----------EAEWITSDVFEFES-NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVG 170 (279)
T ss_pred HHHHHhCc----------CCEEEECchhhhcc-cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhH
Confidence 99998743 24688999988753 35899999999998632211111 111 467888999
Q ss_pred hcccCCCcEEEEEec
Q psy19 417 KIVRPQIGRAILLTS 431 (494)
Q Consensus 417 rvLkpg~G~lvllt~ 431 (494)
.+|+|+ |.+.++..
T Consensus 171 ~~L~p~-G~~~~~ys 184 (279)
T PHA03411 171 YFIVPT-GSAGFAYS 184 (279)
T ss_pred heecCC-ceEEEEEe
Confidence 999999 87776544
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.6e-13 Score=127.15 Aligned_cols=125 Identities=18% Similarity=0.166 Sum_probs=96.1
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecc-cccc--CCCCCeeE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNV-RQLC--FKPACVDG 387 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da-~~l~--~~~~~~D~ 387 (494)
++.+|||+|||+|.+++.++...|+..++|+|+++.+++.|++|+..++. .++.++++|+ ..++ +++++||.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-----~~v~~~~~d~~~~l~~~~~~~~~D~ 114 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-----TNLRLLCGDAVEVLLDMFPDGSLDR 114 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-----CCEEEEecCHHHHHHHHcCccccce
Confidence 56799999999999999998888888999999999999999999987653 3478999999 6665 55678999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHH
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALH 441 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~ 441 (494)
|+++.|..............+..+++++.++|+|| |.+++.++....+...+.
T Consensus 115 V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkpg-G~l~i~~~~~~~~~~~~~ 167 (202)
T PRK00121 115 IYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPG-GEIHFATDWEGYAEYMLE 167 (202)
T ss_pred EEEECCCCCCCccccccccCCHHHHHHHHHHcCCC-CEEEEEcCCHHHHHHHHH
Confidence 99986532111111111123567888999999999 999999887765555444
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.6e-13 Score=134.84 Aligned_cols=143 Identities=19% Similarity=0.171 Sum_probs=96.5
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc-c-C-CCCCeeE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-C-F-KPACVDG 387 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-~-~-~~~~~D~ 387 (494)
.|.+|||.||-||++++.|+..+ ...++++|.+..+++.|++|+..||++ ...+.+++.|+++. . . ..++||+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~~---~~~~~~~~~Dvf~~l~~~~~~~~fD~ 198 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGLD---LDRHRFIQGDVFKFLKRLKKGGRFDL 198 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT-C---CTCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred CCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC---ccceEEEecCHHHHHHHHhcCCCCCE
Confidence 47899999999999999988762 247999999999999999999999863 24678999999874 1 1 2368999
Q ss_pred EEEcCC-CccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH----HHHHHHHHhccccceeeeeEEEccCCceE
Q psy19 388 IVTDLP-FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR----KHLIQALHITSALWKCRKQIKINMSGMKS 462 (494)
Q Consensus 388 IVtNPP-YG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~----~~l~~~l~~~~~l~~~~~~~~v~~Ggl~~ 462 (494)
||+||| |... ..++..-|..++..+.++|+|| |.+++.+++. +.+.+.+.... +
T Consensus 199 IIlDPPsF~k~---~~~~~~~y~~L~~~a~~ll~~g-G~l~~~scs~~i~~~~l~~~~~~~a-----------------~ 257 (286)
T PF10672_consen 199 IILDPPSFAKS---KFDLERDYKKLLRRAMKLLKPG-GLLLTCSCSHHISPDFLLEAVAEAA-----------------R 257 (286)
T ss_dssp EEE--SSEESS---TCEHHHHHHHHHHHHHHTEEEE-EEEEEEE--TTS-HHHHHHHHHHHH-----------------H
T ss_pred EEECCCCCCCC---HHHHHHHHHHHHHHHHHhcCCC-CEEEEEcCCcccCHHHHHHHHHHhC-----------------c
Confidence 999999 5432 3456778999999999999999 9988877753 33444444321 1
Q ss_pred EEEEEeeCCCCCCCcc
Q psy19 463 FVFILNRTADLFDYAI 478 (494)
Q Consensus 463 ~i~v~~~~~~~~d~~~ 478 (494)
.+...++..+++|||.
T Consensus 258 ~~~~~~~~~~p~df~~ 273 (286)
T PF10672_consen 258 EVEFIERLGQPPDFPD 273 (286)
T ss_dssp HCEEEEEEE-------
T ss_pred cceEeeeecccccccc
Confidence 3455688999999998
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-12 Score=124.20 Aligned_cols=123 Identities=11% Similarity=0.067 Sum_probs=86.5
Q ss_pred cchHHHHHHHHHHh-CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 294 TLKPTIAYNMVRLA-SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 294 ~L~e~lAa~ll~la-~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
|..+.+..+++... ...++.+|||+|||||.++++++..+. ..|+++|+++.+++.|++|++.+++ .++.+++
T Consensus 35 p~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~-----~~v~~~~ 108 (199)
T PRK10909 35 PTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKA-----GNARVVN 108 (199)
T ss_pred cCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCC-----CcEEEEE
Confidence 34455544454433 234678999999999999998776653 6899999999999999999998864 2478999
Q ss_pred eccccc-cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHh--hcccCCCcEEEEEecC
Q psy19 373 CNVRQL-CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIG--KIVRPQIGRAILLTSD 432 (494)
Q Consensus 373 ~Da~~l-~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~--rvLkpg~G~lvllt~~ 432 (494)
+|+.+. +.....||+|++||||...+ +...+..+. .+|.|+ +.+++-++.
T Consensus 109 ~D~~~~l~~~~~~fDlV~~DPPy~~g~---------~~~~l~~l~~~~~l~~~-~iv~ve~~~ 161 (199)
T PRK10909 109 TNALSFLAQPGTPHNVVFVDPPFRKGL---------LEETINLLEDNGWLADE-ALIYVESEV 161 (199)
T ss_pred chHHHHHhhcCCCceEEEECCCCCCCh---------HHHHHHHHHHCCCcCCC-cEEEEEecC
Confidence 998764 22234699999999995321 233333333 347777 765555443
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-12 Score=118.71 Aligned_cols=108 Identities=16% Similarity=0.236 Sum_probs=88.9
Q ss_pred CCCCEEEEEcCCcChHHHHHH-hcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc--CCCCCee
Q psy19 310 IPGDVFLDPMCGGGTIPVECS-LSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC--FKPACVD 386 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA-~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~--~~~~~~D 386 (494)
+.+.+|||+|||+|.+++.++ ..+++..++|+|+++.+++.|+.+++..+. . ++++.++|+.+++ ++ +.||
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~----~-ni~~~~~d~~~l~~~~~-~~~D 75 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL----D-NIEFIQGDIEDLPQELE-EKFD 75 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS----T-TEEEEESBTTCGCGCSS-TTEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc----c-ccceEEeehhccccccC-CCee
Confidence 467899999999999999999 567789999999999999999999998764 2 6799999999986 54 6899
Q ss_pred EEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 387 GIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 387 ~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+|++++++. ... + ...+++.+.++|+++ |.+++....
T Consensus 76 ~I~~~~~l~-~~~---~----~~~~l~~~~~~lk~~-G~~i~~~~~ 112 (152)
T PF13847_consen 76 IIISNGVLH-HFP---D----PEKVLKNIIRLLKPG-GILIISDPN 112 (152)
T ss_dssp EEEEESTGG-GTS---H----HHHHHHHHHHHEEEE-EEEEEEEEE
T ss_pred EEEEcCchh-hcc---C----HHHHHHHHHHHcCCC-cEEEEEECC
Confidence 999998872 111 2 235666899999999 998887666
|
... |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-12 Score=138.24 Aligned_cols=125 Identities=20% Similarity=0.214 Sum_probs=98.6
Q ss_pred HHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc
Q psy19 300 AYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC 379 (494)
Q Consensus 300 Aa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~ 379 (494)
+..++.+..+.+|.+|||+|||+|+.++.++...++..|+|+|+++.+++.+++|++.+|+ .+.++++|+..++
T Consensus 233 s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~------~~~~~~~D~~~~~ 306 (427)
T PRK10901 233 AQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL------KATVIVGDARDPA 306 (427)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEcCcccch
Confidence 3344455677889999999999999999988876667999999999999999999998764 1468899998763
Q ss_pred --CCCCCeeEEEEcCCCccc-c----------CCcc---chHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 380 --FKPACVDGIVTDLPFGKR-V----------GSKS---NNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 380 --~~~~~~D~IVtNPPYG~r-~----------~~~~---~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+..++||.|++|||+... . .... .+..++..++..+.++|+|| |++++.|+
T Consensus 307 ~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpG-G~lvystc 373 (427)
T PRK10901 307 QWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPG-GTLLYATC 373 (427)
T ss_pred hhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEeC
Confidence 234689999999997421 0 0111 13456788999999999999 99999887
|
|
| >KOG3420|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.4e-13 Score=119.35 Aligned_cols=102 Identities=23% Similarity=0.316 Sum_probs=85.9
Q ss_pred cccchHHHHHHHHHHhC----CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccc
Q psy19 292 ITTLKPTIAYNMVRLAS----PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELK 367 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~----~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~ 367 (494)
..+.+|.+|+.|+.... --.|..++|+|||.|-+.+.+++. ....++|+||||++++++.+|++...+ .
T Consensus 25 QY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~-~~e~vlGfDIdpeALEIf~rNaeEfEv------q 97 (185)
T KOG3420|consen 25 QYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMP-KNESVLGFDIDPEALEIFTRNAEEFEV------Q 97 (185)
T ss_pred hCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcC-CCceEEeeecCHHHHHHHhhchHHhhh------h
Confidence 45789999999998763 236789999999999999766543 446899999999999999999997755 3
Q ss_pred eeeeeeccccccCCCCCeeEEEEcCCCccccCC
Q psy19 368 VSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGS 400 (494)
Q Consensus 368 i~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~ 400 (494)
+++.++|+.++.+..+.||.+|.|||||.+...
T Consensus 98 idlLqcdildle~~~g~fDtaviNppFGTk~~~ 130 (185)
T KOG3420|consen 98 IDLLQCDILDLELKGGIFDTAVINPPFGTKKKG 130 (185)
T ss_pred hheeeeeccchhccCCeEeeEEecCCCCccccc
Confidence 479999999997777899999999999988754
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-12 Score=123.63 Aligned_cols=122 Identities=16% Similarity=0.272 Sum_probs=96.5
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc---CCCCCeeE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC---FKPACVDG 387 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~---~~~~~~D~ 387 (494)
...++||+|||+|.+++.+|..+|+..++|+|+++.+++.|++|+...++ .++.++++|+.+++ ++++++|.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l-----~ni~~i~~d~~~~~~~~~~~~~~d~ 90 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL-----KNLHVLCGDANELLDKFFPDGSLSK 90 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC-----CCEEEEccCHHHHHHhhCCCCceeE
Confidence 45689999999999999999999999999999999999999999987654 25789999998763 34468999
Q ss_pred EEEcCC--CccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHH
Q psy19 388 IVTDLP--FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQAL 440 (494)
Q Consensus 388 IVtNPP--YG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l 440 (494)
|++|+| |...... ...-++..+++++.++|+|| |.+.+.|.....+...+
T Consensus 91 v~~~~pdpw~k~~h~--~~r~~~~~~l~~~~r~Lkpg-G~l~~~td~~~~~~~~~ 142 (194)
T TIGR00091 91 VFLNFPDPWPKKRHN--KRRITQPHFLKEYANVLKKG-GVIHFKTDNEPLFEDML 142 (194)
T ss_pred EEEECCCcCCCCCcc--ccccCCHHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHH
Confidence 999975 5332111 11223567888999999999 99999988776555443
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-11 Score=119.94 Aligned_cols=117 Identities=19% Similarity=0.291 Sum_probs=93.9
Q ss_pred HHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc
Q psy19 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC 379 (494)
Q Consensus 301 a~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~ 379 (494)
..++.....+++.+|||+|||+|.+++.++... ++..++|+|+++.+++.|+.|+...+. .++.++++|+..++
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~v~~~~~d~~~~~ 109 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-----HNVELVHGNAMELP 109 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-----CceEEEEechhcCC
Confidence 445666677788999999999999999888764 567999999999999999999986543 35789999999888
Q ss_pred CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 380 FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 380 ~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+++++||+|+++.++.. . .+ +..+++++.++|+|| |+++++..
T Consensus 110 ~~~~~fD~V~~~~~l~~-~---~~----~~~~l~~~~~~Lk~g-G~l~~~~~ 152 (231)
T TIGR02752 110 FDDNSFDYVTIGFGLRN-V---PD----YMQVLREMYRVVKPG-GKVVCLET 152 (231)
T ss_pred CCCCCccEEEEeccccc-C---CC----HHHHHHHHHHHcCcC-eEEEEEEC
Confidence 77789999999865432 1 12 346777899999999 99887643
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-11 Score=115.45 Aligned_cols=132 Identities=14% Similarity=0.094 Sum_probs=100.0
Q ss_pred cchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
...+.+.+.++......++.+|||+|||+|.+++.++..+++.+++|+|+++.+++.|++|+..+++ ..+.+.++
T Consensus 14 ~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-----~~i~~~~~ 88 (187)
T PRK08287 14 MTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-----GNIDIIPG 88 (187)
T ss_pred CchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-----CCeEEEec
Confidence 4566666667777777788999999999999999999888888999999999999999999987754 24678888
Q ss_pred ccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec---CHHHHHHHHHhcc
Q psy19 374 NVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS---DRKHLIQALHITS 444 (494)
Q Consensus 374 Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~---~~~~l~~~l~~~~ 444 (494)
|+.. ++. .+||+|+++-..+ . +..+++.+.++|+|| |++++... +...+.+.+.+.+
T Consensus 89 d~~~-~~~-~~~D~v~~~~~~~-------~----~~~~l~~~~~~Lk~g-G~lv~~~~~~~~~~~~~~~l~~~g 148 (187)
T PRK08287 89 EAPI-ELP-GKADAIFIGGSGG-------N----LTAIIDWSLAHLHPG-GRLVLTFILLENLHSALAHLEKCG 148 (187)
T ss_pred Cchh-hcC-cCCCEEEECCCcc-------C----HHHHHHHHHHhcCCC-eEEEEEEecHhhHHHHHHHHHHCC
Confidence 8743 333 5799999974311 1 345677899999999 99877542 3333445555544
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-12 Score=141.43 Aligned_cols=140 Identities=15% Similarity=0.175 Sum_probs=91.5
Q ss_pred cccccccchHHHHHHHHHHhCC---CCCCEEEEEcCCcChHHHHHHhcCC--------CCeEEEEeCCHHHHHHHHHHHH
Q psy19 288 VEFNITTLKPTIAYNMVRLASP---IPGDVFLDPMCGGGTIPVECSLSYP--------HTFFVCGDINEKLVLKTQANVL 356 (494)
Q Consensus 288 ~~~~~a~L~e~lAa~ll~la~~---~~g~~VLDP~CGSGtilIEAA~~~~--------~~~v~G~Did~~al~~Ar~Nl~ 356 (494)
.+++|..+.+.++..++...+. ..+.+|+||+||+|.|++.++...+ ...++|+|+|+.++..|+.|+.
T Consensus 5 qfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~ 84 (524)
T TIGR02987 5 TFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLG 84 (524)
T ss_pred ccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHh
Confidence 3555555544444433322111 1346899999999999999887642 2578999999999999999998
Q ss_pred hccCCCCcccceeeeeecccccc-----CCCCCeeEEEEcCCCccccCCc------------------------------
Q psy19 357 HNSGNLNRELKVSPLVCNVRQLC-----FKPACVDGIVTDLPFGKRVGSK------------------------------ 401 (494)
Q Consensus 357 ~~g~~~~~~~~i~~~~~Da~~l~-----~~~~~~D~IVtNPPYG~r~~~~------------------------------ 401 (494)
..+. ..+.+.+.|..... -..+.||+||+||||+..-...
T Consensus 85 ~~~~-----~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (524)
T TIGR02987 85 EFAL-----LEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLP 159 (524)
T ss_pred hcCC-----CCceeeecccccccccccccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcc
Confidence 6641 11244555533211 1124799999999998532100
Q ss_pred --------cchHHHHHHHH-HHHhhcccCCCcEEEEEecCH
Q psy19 402 --------SNNFLLYRLFL-IEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 402 --------~~~~~ly~~fL-~~l~rvLkpg~G~lvllt~~~ 433 (494)
.+...+|..|+ +.+.++|++| |++++|+|..
T Consensus 160 ~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~-G~~~~I~P~s 199 (524)
T TIGR02987 160 YSDPIRKYAGVGTEYSRVFEEISLEIANKN-GYVSIISPAS 199 (524)
T ss_pred hhhhhcccCCcccHHHHHHHHHHHHhcCCC-CEEEEEEChH
Confidence 01123566555 6688999999 9999999954
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG2904|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.6e-12 Score=123.10 Aligned_cols=137 Identities=10% Similarity=0.093 Sum_probs=104.6
Q ss_pred cccccchHHHHHHHHHHh---CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCccc
Q psy19 290 FNITTLKPTIAYNMVRLA---SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNREL 366 (494)
Q Consensus 290 ~~~a~L~e~lAa~ll~la---~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~ 366 (494)
+-|-|-.|.+..+++... .+-.+..+||.|||||.|++..+...|.++++++|.++.|+..|.+|+..+++ .+
T Consensus 124 lIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l----~g 199 (328)
T KOG2904|consen 124 LIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL----SG 199 (328)
T ss_pred eecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh----cC
Confidence 457777888888877643 34566789999999999999999888889999999999999999999998876 44
Q ss_pred ceeee----eeccccc-cCCCCCeeEEEEcCCCccccC------------------CccchHHHHHHHHHHHhhcccCCC
Q psy19 367 KVSPL----VCNVRQL-CFKPACVDGIVTDLPFGKRVG------------------SKSNNFLLYRLFLIEIGKIVRPQI 423 (494)
Q Consensus 367 ~i~~~----~~Da~~l-~~~~~~~D~IVtNPPYG~r~~------------------~~~~~~~ly~~fL~~l~rvLkpg~ 423 (494)
++.++ ..|...- +...+.+|++|+||||-..-. ...+..+.|..++.-+.|.|+||
T Consensus 200 ~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~g- 278 (328)
T KOG2904|consen 200 RIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPG- 278 (328)
T ss_pred ceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccC-
Confidence 45555 4555443 344579999999999953211 11233455667888899999998
Q ss_pred cEEEEEec
Q psy19 424 GRAILLTS 431 (494)
Q Consensus 424 G~lvllt~ 431 (494)
|.+++-+.
T Consensus 279 g~~~le~~ 286 (328)
T KOG2904|consen 279 GFEQLELV 286 (328)
T ss_pred CeEEEEec
Confidence 98888655
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.4e-12 Score=126.88 Aligned_cols=121 Identities=18% Similarity=0.143 Sum_probs=94.6
Q ss_pred HhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCC
Q psy19 306 LASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPAC 384 (494)
Q Consensus 306 la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~ 384 (494)
+..+++|.+|||.|||+|+.++.+|... +...|+++|+++.+++.+++|++.+|+ ..+.+.+.|+..++...+.
T Consensus 66 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-----~~v~~~~~D~~~~~~~~~~ 140 (264)
T TIGR00446 66 ALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-----LNVAVTNFDGRVFGAAVPK 140 (264)
T ss_pred HhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-----CcEEEecCCHHHhhhhccC
Confidence 4467889999999999999998877653 235899999999999999999998875 2468899998876544457
Q ss_pred eeEEEEcCCCc-ccc--C--------Cc---cchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 385 VDGIVTDLPFG-KRV--G--------SK---SNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 385 ~D~IVtNPPYG-~r~--~--------~~---~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
||.|++|||+. ... . .. ..+..+...+|..+.++|||| |++++.|+.
T Consensus 141 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg-G~lvYstcs 201 (264)
T TIGR00446 141 FDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPG-GVLVYSTCS 201 (264)
T ss_pred CCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEeCC
Confidence 99999999963 111 0 00 113346678999999999999 999988774
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-11 Score=116.12 Aligned_cols=103 Identities=13% Similarity=0.075 Sum_probs=85.4
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt 390 (494)
++.+|||+|||+|.+++.+|..+++.+++|+|+++.+++.+++|++.+++ .++.++++|+.+++. .++||+|++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~-----~~i~~i~~d~~~~~~-~~~fD~I~s 115 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL-----NNVEIVNGRAEDFQH-EEQFDVITS 115 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC-----CCeEEEecchhhccc-cCCccEEEe
Confidence 47899999999999999998888888999999999999999999997764 237899999988743 468999999
Q ss_pred cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
|. + . + +..+++.+.++|+|| |++++....
T Consensus 116 ~~-~----~---~----~~~~~~~~~~~Lkpg-G~lvi~~~~ 144 (181)
T TIGR00138 116 RA-L----A---S----LNVLLELTLNLLKVG-GYFLAYKGK 144 (181)
T ss_pred hh-h----h---C----HHHHHHHHHHhcCCC-CEEEEEcCC
Confidence 75 1 1 2 345666789999999 998887663
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.8e-12 Score=119.98 Aligned_cols=110 Identities=15% Similarity=0.063 Sum_probs=80.2
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc-c-C-CCC-Ce
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-C-F-KPA-CV 385 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-~-~-~~~-~~ 385 (494)
-.+.+|||+|||||++++||+.+.. ..++++|+++.+++.+++|++.++. ..++.++++|+... . + ... .+
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~----~~~~~~~~~D~~~~l~~~~~~~~~~ 122 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKS----GEQAEVVRNSALRALKFLAKKPTFD 122 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCC----cccEEEEehhHHHHHHHhhccCCCc
Confidence 3578999999999999999999853 4899999999999999999998865 34578999999653 2 2 112 48
Q ss_pred eEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 386 DGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 386 D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
|+|+.||||+... ...++..+.. ..+|+++ |.+++-.+.
T Consensus 123 dvv~~DPPy~~~~-----~~~~l~~l~~--~~~l~~~-~iiv~E~~~ 161 (189)
T TIGR00095 123 NVIYLDPPFFNGA-----LQALLELCEN--NWILEDT-VLIVVEEDR 161 (189)
T ss_pred eEEEECcCCCCCc-----HHHHHHHHHH--CCCCCCC-eEEEEEecC
Confidence 9999999998532 2333332211 3467777 765554443
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-12 Score=121.29 Aligned_cols=126 Identities=19% Similarity=0.238 Sum_probs=89.2
Q ss_pred cchHHHHHHHHHHhCC--CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 294 TLKPTIAYNMVRLASP--IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~--~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
|+...+-.+|.++.+. -.|.+|||+|||||.+++||+.++. ..++.+|.|+.++...++|++..+. ...+.++
T Consensus 23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~~----~~~~~v~ 97 (183)
T PF03602_consen 23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLGL----EDKIRVI 97 (183)
T ss_dssp SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-----GGGEEEE
T ss_pred CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhCC----Ccceeee
Confidence 4445555566665554 3789999999999999999999853 5899999999999999999998764 4467888
Q ss_pred eeccccc-c-C--CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHh--hcccCCCcEEEEEecCH
Q psy19 372 VCNVRQL-C-F--KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIG--KIVRPQIGRAILLTSDR 433 (494)
Q Consensus 372 ~~Da~~l-~-~--~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~--rvLkpg~G~lvllt~~~ 433 (494)
..|+... + . ....||+|..||||..... |..++..+. .+|+++ |.+++-++..
T Consensus 98 ~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~--------~~~~l~~l~~~~~l~~~-~~ii~E~~~~ 156 (183)
T PF03602_consen 98 KGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLY--------YEELLELLAENNLLNED-GLIIIEHSKK 156 (183)
T ss_dssp ESSHHHHHHHHHHCTS-EEEEEE--STTSCHH--------HHHHHHHHHHTTSEEEE-EEEEEEEETT
T ss_pred ccCHHHHHHhhcccCCCceEEEECCCcccchH--------HHHHHHHHHHCCCCCCC-EEEEEEecCC
Confidence 8996544 1 2 3568999999999986421 345555565 689988 8877766554
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-11 Score=129.11 Aligned_cols=133 Identities=11% Similarity=0.124 Sum_probs=94.6
Q ss_pred ccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 291 NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 291 ~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
.+....+.+...+..++...++.+|||+|||+|++++++|.. +..++|+|+++.+++.|++|++.+++ .++.+
T Consensus 213 ~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~-----~~~~~ 285 (374)
T TIGR02085 213 TNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGL-----DNLSF 285 (374)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCC-----CcEEE
Confidence 344455555555555444345679999999999999999965 57899999999999999999998865 25789
Q ss_pred eeeccccccC-CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHhc
Q psy19 371 LVCNVRQLCF-KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHIT 443 (494)
Q Consensus 371 ~~~Da~~l~~-~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~~ 443 (494)
.++|+.+... ....||+||+||||. |.. ..++..+. .++|+ +++.+++++..+.+.+...
T Consensus 286 ~~~d~~~~~~~~~~~~D~vi~DPPr~---G~~-------~~~l~~l~-~~~p~--~ivyvsc~p~TlaRDl~~L 346 (374)
T TIGR02085 286 AALDSAKFATAQMSAPELVLVNPPRR---GIG-------KELCDYLS-QMAPK--FILYSSCNAQTMAKDIAEL 346 (374)
T ss_pred EECCHHHHHHhcCCCCCEEEECCCCC---CCc-------HHHHHHHH-hcCCC--eEEEEEeCHHHHHHHHHHh
Confidence 9999976521 124699999999973 322 12333343 25664 5777778887777766643
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.4e-11 Score=111.72 Aligned_cols=122 Identities=19% Similarity=0.182 Sum_probs=99.4
Q ss_pred cchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
..++.+-+..+....+++|+.++|.|||||++.+|+|..+|..+++++|.++++++..++|+...|+ +++.++.+
T Consensus 17 ~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-----~n~~vv~g 91 (187)
T COG2242 17 MTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-----DNLEVVEG 91 (187)
T ss_pred CcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-----CcEEEEec
Confidence 5788888888888889999999999999999999999999999999999999999999999998875 45789999
Q ss_pred ccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 374 NVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 374 Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
|+-+.-....++|.|+.. |. .. +..+++.+...|+|| |++++=.-..
T Consensus 92 ~Ap~~L~~~~~~daiFIG-------Gg-~~----i~~ile~~~~~l~~g-grlV~naitl 138 (187)
T COG2242 92 DAPEALPDLPSPDAIFIG-------GG-GN----IEEILEAAWERLKPG-GRLVANAITL 138 (187)
T ss_pred cchHhhcCCCCCCEEEEC-------CC-CC----HHHHHHHHHHHcCcC-CeEEEEeecH
Confidence 987762111279998772 22 33 345556788999999 9999854443
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-11 Score=126.70 Aligned_cols=128 Identities=12% Similarity=0.159 Sum_probs=90.4
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
+.+.+...+..+....++.+|||+|||+|++++.+|.. +..|+|+|+++.|++.|++|++.+++ .+++++++|
T Consensus 157 ~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l-----~~v~~~~~D 229 (315)
T PRK03522 157 VAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGL-----TNVQFQALD 229 (315)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCC-----CceEEEEcC
Confidence 34444444444444345689999999999999999985 67999999999999999999998765 357899999
Q ss_pred cccccC-CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHh
Q psy19 375 VRQLCF-KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHI 442 (494)
Q Consensus 375 a~~l~~-~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~ 442 (494)
+.++.. ..+.||+||+|||+ .+.... +.. .+. -+.| ++++++++++..+.+.+..
T Consensus 230 ~~~~~~~~~~~~D~Vv~dPPr---~G~~~~---~~~----~l~-~~~~--~~ivyvsc~p~t~~rd~~~ 285 (315)
T PRK03522 230 STQFATAQGEVPDLVLVNPPR---RGIGKE---LCD----YLS-QMAP--RFILYSSCNAQTMAKDLAH 285 (315)
T ss_pred HHHHHHhcCCCCeEEEECCCC---CCccHH---HHH----HHH-HcCC--CeEEEEECCcccchhHHhh
Confidence 987632 23579999999994 332211 111 122 2344 4678888887666665554
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.9e-11 Score=119.09 Aligned_cols=117 Identities=16% Similarity=0.188 Sum_probs=88.8
Q ss_pred HHHHhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC
Q psy19 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK 381 (494)
Q Consensus 303 ll~la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~ 381 (494)
++.++...++.+|||+|||+|.+++.++... +...++|+|+++.|++.|+++...... ....++.++++|+.++|++
T Consensus 65 ~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~--~~~~~i~~~~~d~~~lp~~ 142 (261)
T PLN02233 65 AVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK--SCYKNIEWIEGDATDLPFD 142 (261)
T ss_pred HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh--ccCCCeEEEEcccccCCCC
Confidence 3445567788999999999999998887653 457999999999999999887642110 1123578999999999998
Q ss_pred CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 382 PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 382 ~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+++||+|+++--+ +. ..+ ...+++++.|+|||| |+++++.
T Consensus 143 ~~sfD~V~~~~~l--~~--~~d----~~~~l~ei~rvLkpG-G~l~i~d 182 (261)
T PLN02233 143 DCYFDAITMGYGL--RN--VVD----RLKAMQEMYRVLKPG-SRVSILD 182 (261)
T ss_pred CCCEeEEEEeccc--cc--CCC----HHHHHHHHHHHcCcC-cEEEEEE
Confidence 8899999986322 21 112 245777999999999 9988864
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-11 Score=128.09 Aligned_cols=119 Identities=18% Similarity=0.128 Sum_probs=94.7
Q ss_pred HHHHHHHHhCC-----CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 299 IAYNMVRLASP-----IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 299 lAa~ll~la~~-----~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
+...++..++. .++.+|||+|||+|.++..++..+ ++.++|+|+++.+++.|++++...++ ..++.++++
T Consensus 101 ~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~----~~~v~~~~~ 175 (340)
T PLN02244 101 MIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGL----SDKVSFQVA 175 (340)
T ss_pred HHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEEc
Confidence 34445666665 678899999999999999988766 67999999999999999999987654 346789999
Q ss_pred ccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 374 NVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 374 Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
|+.++++++++||+|+++--+. .+ .+ ...+++++.++|||| |++++.+.
T Consensus 176 D~~~~~~~~~~FD~V~s~~~~~-h~---~d----~~~~l~e~~rvLkpG-G~lvi~~~ 224 (340)
T PLN02244 176 DALNQPFEDGQFDLVWSMESGE-HM---PD----KRKFVQELARVAAPG-GRIIIVTW 224 (340)
T ss_pred CcccCCCCCCCccEEEECCchh-cc---CC----HHHHHHHHHHHcCCC-cEEEEEEe
Confidence 9999988888999999954321 11 12 246777899999999 99988653
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.1e-11 Score=106.06 Aligned_cols=115 Identities=19% Similarity=0.155 Sum_probs=90.2
Q ss_pred HHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc
Q psy19 298 TIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ 377 (494)
Q Consensus 298 ~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~ 377 (494)
.+...++....+.++.+|||+|||+|.+++.++..++...++|+|+++.+++.|++|+..++. .++.+..+|+..
T Consensus 6 ~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 80 (124)
T TIGR02469 6 EVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV-----SNIVIVEGDAPE 80 (124)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC-----CceEEEeccccc
Confidence 344556666677778899999999999999999988878999999999999999999987654 246788888765
Q ss_pred c-cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 378 L-CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 378 l-~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
. +....+||+|+++.+.. .+..+++.+.++|+|| |.+++-
T Consensus 81 ~~~~~~~~~D~v~~~~~~~-----------~~~~~l~~~~~~Lk~g-G~li~~ 121 (124)
T TIGR02469 81 ALEDSLPEPDRVFIGGSGG-----------LLQEILEAIWRRLRPG-GRIVLN 121 (124)
T ss_pred cChhhcCCCCEEEECCcch-----------hHHHHHHHHHHHcCCC-CEEEEE
Confidence 3 22235899999964321 2457788999999999 988764
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.1e-11 Score=115.41 Aligned_cols=129 Identities=19% Similarity=0.134 Sum_probs=98.5
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
.++.+.+..+....+.++..|||+|||+|.+++++|... +..+++++|+++.+++.|++|++.+++ ..++.++.+
T Consensus 24 t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~----~~~v~~~~~ 99 (198)
T PRK00377 24 TKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV----LNNIVLIKG 99 (198)
T ss_pred CHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC----CCCeEEEEe
Confidence 446666666677788899999999999999999998754 457899999999999999999998764 245678889
Q ss_pred ccccc-cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHH
Q psy19 374 NVRQL-CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQA 439 (494)
Q Consensus 374 Da~~l-~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~ 439 (494)
|+.+. +...+.||.|+++.. ... +..+++.+.++|+|| |++++.+.....+.+.
T Consensus 100 d~~~~l~~~~~~~D~V~~~~~-------~~~----~~~~l~~~~~~Lkpg-G~lv~~~~~~~~~~~~ 154 (198)
T PRK00377 100 EAPEILFTINEKFDRIFIGGG-------SEK----LKEIISASWEIIKKG-GRIVIDAILLETVNNA 154 (198)
T ss_pred chhhhHhhcCCCCCEEEECCC-------ccc----HHHHHHHHHHHcCCC-cEEEEEeecHHHHHHH
Confidence 98764 222358999999642 112 456777899999999 9998866665434443
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.1e-12 Score=133.26 Aligned_cols=124 Identities=13% Similarity=0.102 Sum_probs=97.4
Q ss_pred HHHHhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-C
Q psy19 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-F 380 (494)
Q Consensus 303 ll~la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~ 380 (494)
+..+.++.+|.+|||+|||+|+..+.+|... ++..|+|+|+++.+++.+++|++..|+ ..+.+.++|+..++ +
T Consensus 229 ~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~-----~~v~~~~~Da~~l~~~ 303 (431)
T PRK14903 229 VPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL-----SSIEIKIADAERLTEY 303 (431)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CeEEEEECchhhhhhh
Confidence 3345678899999999999999988777653 457999999999999999999998875 23688999998875 3
Q ss_pred CCCCeeEEEEcCCCcc-cc-CCc------------cchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 381 KPACVDGIVTDLPFGK-RV-GSK------------SNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~-r~-~~~------------~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
..++||.|++|||+.. .. ... ..+..++.++|..+.++|+|| |++++.|+.
T Consensus 304 ~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG-G~LvYsTCs 368 (431)
T PRK14903 304 VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKG-GILLYSTCT 368 (431)
T ss_pred hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEECC
Confidence 3468999999999831 11 000 123456788999999999999 999998884
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.4e-11 Score=122.47 Aligned_cols=132 Identities=21% Similarity=0.253 Sum_probs=92.1
Q ss_pred chHHHHHHHHHHhC-CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 295 LKPTIAYNMVRLAS-PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 295 L~e~lAa~ll~la~-~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
..||.+.++-.+.. .++|.+|||.|||||-++|.|++.+. ..++|+|+||.|++.|+.|++.|++.. .+.....
T Consensus 145 ~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~~----~~~~~~~ 219 (300)
T COG2264 145 THPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGVEL----LVQAKGF 219 (300)
T ss_pred CChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCCch----hhhcccc
Confidence 44555555555543 35889999999999999999998843 469999999999999999999998731 1222333
Q ss_pred ccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE--EecC-HHHHHHHHHhcc
Q psy19 374 NVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL--LTSD-RKHLIQALHITS 444 (494)
Q Consensus 374 Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl--lt~~-~~~l~~~l~~~~ 444 (494)
+....+ ..+.||+||+|- +.+....+...+.+.|+|| |++++ |..+ .+.+.+++...+
T Consensus 220 ~~~~~~-~~~~~DvIVANI-----------LA~vl~~La~~~~~~lkpg-g~lIlSGIl~~q~~~V~~a~~~~g 280 (300)
T COG2264 220 LLLEVP-ENGPFDVIVANI-----------LAEVLVELAPDIKRLLKPG-GRLILSGILEDQAESVAEAYEQAG 280 (300)
T ss_pred cchhhc-ccCcccEEEehh-----------hHHHHHHHHHHHHHHcCCC-ceEEEEeehHhHHHHHHHHHHhCC
Confidence 333322 225899999985 2334556666899999999 98765 2233 344666665545
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-11 Score=131.43 Aligned_cols=127 Identities=18% Similarity=0.255 Sum_probs=95.7
Q ss_pred cchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
...+.+...++.++...++.+|||+|||+|++++.+|.. ...++|+|+++.|++.|++|+..+++ .++.++++
T Consensus 280 ~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~-----~~v~~~~~ 352 (443)
T PRK13168 280 QVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ--AAEVVGVEGVEAMVERARENARRNGL-----DNVTFYHA 352 (443)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCC-----CceEEEEe
Confidence 345677777777777778899999999999999999887 46899999999999999999998764 24789999
Q ss_pred ccccc----cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHH
Q psy19 374 NVRQL----CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALH 441 (494)
Q Consensus 374 Da~~l----~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~ 441 (494)
|+.+. ++.+++||+|++||||.. .. ..+..+.+ ++|+ +++++++++..+.+.+.
T Consensus 353 d~~~~l~~~~~~~~~fD~Vi~dPPr~g---~~--------~~~~~l~~-~~~~--~ivyvSCnp~tlaRDl~ 410 (443)
T PRK13168 353 NLEEDFTDQPWALGGFDKVLLDPPRAG---AA--------EVMQALAK-LGPK--RIVYVSCNPATLARDAG 410 (443)
T ss_pred ChHHhhhhhhhhcCCCCEEEECcCCcC---hH--------HHHHHHHh-cCCC--eEEEEEeChHHhhccHH
Confidence 98753 233457999999999852 11 12223443 4554 56777888876665554
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-11 Score=130.35 Aligned_cols=126 Identities=17% Similarity=0.130 Sum_probs=97.0
Q ss_pred HHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC-
Q psy19 302 NMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF- 380 (494)
Q Consensus 302 ~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~- 380 (494)
.++.+..+.+|.+|||.|||+|+.++.++...+...|+|+|+++.+++.+++|++..|+. ..+.+..+|....+.
T Consensus 229 ~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~----~~v~~~~~d~~~~~~~ 304 (426)
T TIGR00563 229 WVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT----IKAETKDGDGRGPSQW 304 (426)
T ss_pred HHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC----eEEEEecccccccccc
Confidence 444556778899999999999999999887665679999999999999999999988752 234456777765543
Q ss_pred -CCCCeeEEEEcCCCccc-c-C---------Cc---cchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 381 -KPACVDGIVTDLPFGKR-V-G---------SK---SNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 381 -~~~~~D~IVtNPPYG~r-~-~---------~~---~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
..++||.|++|||+... . . .. ..+..+...+|.++.++|||| |++++.|+.
T Consensus 305 ~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg-G~lvystcs 370 (426)
T TIGR00563 305 AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG-GTLVYATCS 370 (426)
T ss_pred ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEEeCC
Confidence 34689999999996321 1 0 01 123455778999999999999 999998884
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.6e-11 Score=126.53 Aligned_cols=124 Identities=15% Similarity=0.162 Sum_probs=100.3
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc--cCCCCCeeE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL--CFKPACVDG 387 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l--~~~~~~~D~ 387 (494)
..+..+||+|||+|.+++.+|...|+..++|+|+++.++..|.+++..+++ .++.++++|+..+ .++++++|.
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-----~NV~~i~~DA~~ll~~~~~~s~D~ 195 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-----KNLLIINYDARLLLELLPSNSVEK 195 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEECCHHHhhhhCCCCceeE
Confidence 456689999999999999999999999999999999999999999987764 3478999999765 466789999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHH
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALH 441 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~ 441 (494)
|++|.|....-..+ .+-+...|+.++.|+|+|| |.+.+.|.+..++...+.
T Consensus 196 I~lnFPdPW~KkrH--RRlv~~~fL~e~~RvLkpG-G~l~l~TD~~~y~~~~~e 246 (390)
T PRK14121 196 IFVHFPVPWDKKPH--RRVISEDFLNEALRVLKPG-GTLELRTDSELYFEFSLE 246 (390)
T ss_pred EEEeCCCCccccch--hhccHHHHHHHHHHHcCCC-cEEEEEEECHHHHHHHHH
Confidence 99998743211111 2234678999999999999 999999998876655444
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=5e-11 Score=113.66 Aligned_cols=125 Identities=19% Similarity=0.202 Sum_probs=95.8
Q ss_pred cchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
+....+.+.++..+.+.++.+|||+|||+|.++++++...++..++|+|+++.+++.|++|++.+++ .+++++.+
T Consensus 23 ~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-----~~v~~~~~ 97 (196)
T PRK07402 23 LTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-----KNVEVIEG 97 (196)
T ss_pred CCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CCeEEEEC
Confidence 4556666677888888889999999999999999998777778999999999999999999997764 24688889
Q ss_pred ccccc-cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHH
Q psy19 374 NVRQL-CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHL 436 (494)
Q Consensus 374 Da~~l-~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l 436 (494)
|+... +.....+|.++.+.. .. +..+++.+.++|+|| |++++.+++...+
T Consensus 98 d~~~~~~~~~~~~d~v~~~~~--------~~----~~~~l~~~~~~Lkpg-G~li~~~~~~~~~ 148 (196)
T PRK07402 98 SAPECLAQLAPAPDRVCIEGG--------RP----IKEILQAVWQYLKPG-GRLVATASSLEGL 148 (196)
T ss_pred chHHHHhhCCCCCCEEEEECC--------cC----HHHHHHHHHHhcCCC-eEEEEEeecHHHH
Confidence 88652 211124566666421 11 356677899999999 9999988876433
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.6e-11 Score=113.30 Aligned_cols=128 Identities=18% Similarity=0.200 Sum_probs=92.7
Q ss_pred chHHHHHHHHHHhCC--CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 295 LKPTIAYNMVRLASP--IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 295 L~e~lAa~ll~la~~--~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
....+-.++.++... -.|.++||+|+|||.+++||+.++. ..++.+|.|.+++...++|++..+. ...+.++.
T Consensus 25 T~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~~----~~~~~~~~ 99 (187)
T COG0742 25 TTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALGL----EGEARVLR 99 (187)
T ss_pred CchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCC----ccceEEEe
Confidence 333444566776654 5889999999999999999999853 5899999999999999999997764 45568889
Q ss_pred eccccc--cCCC-CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 373 CNVRQL--CFKP-ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 373 ~Da~~l--~~~~-~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
.|+... .... +.||+|..||||...+... . ..-.+-.-..+|+|+ +.+++-+...
T Consensus 100 ~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~--~---~~~~~~~~~~~L~~~-~~iv~E~~~~ 157 (187)
T COG0742 100 NDALRALKQLGTREPFDLVFLDPPYAKGLLDK--E---LALLLLEENGWLKPG-ALIVVEHDKD 157 (187)
T ss_pred ecHHHHHHhcCCCCcccEEEeCCCCccchhhH--H---HHHHHHHhcCCcCCC-cEEEEEeCCC
Confidence 998854 2222 2499999999999543211 1 111111245689998 8877766644
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.8e-11 Score=120.64 Aligned_cols=102 Identities=16% Similarity=0.074 Sum_probs=72.8
Q ss_pred cccchHHHHHHHHHHhC------C--CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhc-cCCC
Q psy19 292 ITTLKPTIAYNMVRLAS------P--IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN-SGNL 362 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~------~--~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~-g~~~ 362 (494)
|.|.|-+....+..+.. . ..+.++||+|||+|.|...++...++..++|+|||+.+++.|+.|+..+ ++
T Consensus 87 piP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l-- 164 (321)
T PRK11727 87 PIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL-- 164 (321)
T ss_pred CCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC--
Confidence 45556555555544421 1 1457899999999988777776666789999999999999999999987 55
Q ss_pred Ccccceeeee-ecccccc----CCCCCeeEEEEcCCCccc
Q psy19 363 NRELKVSPLV-CNVRQLC----FKPACVDGIVTDLPFGKR 397 (494)
Q Consensus 363 ~~~~~i~~~~-~Da~~l~----~~~~~~D~IVtNPPYG~r 397 (494)
..++.+.. .|...+. .+.+.||+|||||||...
T Consensus 165 --~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~s 202 (321)
T PRK11727 165 --NGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPFHAS 202 (321)
T ss_pred --cCcEEEEEccchhhhhhcccccCCceEEEEeCCCCcCc
Confidence 34566643 3433321 134689999999999644
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-11 Score=131.09 Aligned_cols=124 Identities=18% Similarity=0.165 Sum_probs=96.3
Q ss_pred HHHHHhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-
Q psy19 302 NMVRLASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC- 379 (494)
Q Consensus 302 ~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~- 379 (494)
.+..+..+.++..|||+|||+|++++.++... +...|+|+|+++.+++.+++|++.+|+ . .+.++++|+..++
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~----~-~v~~~~~D~~~~~~ 315 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL----T-NIETKALDARKVHE 315 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC----C-eEEEEeCCcccccc
Confidence 34445577788999999999999999888764 457999999999999999999998875 2 3789999998763
Q ss_pred -CCCCCeeEEEEcCCCc-ccc-C---------Ccc---chHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 380 -FKPACVDGIVTDLPFG-KRV-G---------SKS---NNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 380 -~~~~~~D~IVtNPPYG-~r~-~---------~~~---~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+. +.||+|++|||+. ... . ... .+..+...+|..+.++|+|| |++++.|+.
T Consensus 316 ~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG-G~lvystcs 381 (444)
T PRK14902 316 KFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKG-GILVYSTCT 381 (444)
T ss_pred hhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCC-CEEEEEcCC
Confidence 33 6899999999963 110 0 001 23345677899999999999 999987764
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.30 E-value=3e-11 Score=116.97 Aligned_cols=120 Identities=17% Similarity=0.038 Sum_probs=95.1
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
....|.+.+.|+.++..+++.+|||+|||+|.+++.++...+ ...|+|+|+++.+++.|++|+..+++ .++.++
T Consensus 59 ~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-----~~v~~~ 133 (215)
T TIGR00080 59 TISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-----DNVIVI 133 (215)
T ss_pred EechHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----CCeEEE
Confidence 345677888899988999999999999999999998887743 35799999999999999999998764 346889
Q ss_pred eeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 372 VCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 372 ~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
.+|+.........||+|+++++... +...+.+.|+|| |++++....
T Consensus 134 ~~d~~~~~~~~~~fD~Ii~~~~~~~--------------~~~~~~~~L~~g-G~lv~~~~~ 179 (215)
T TIGR00080 134 VGDGTQGWEPLAPYDRIYVTAAGPK--------------IPEALIDQLKEG-GILVMPVGE 179 (215)
T ss_pred ECCcccCCcccCCCCEEEEcCCccc--------------ccHHHHHhcCcC-cEEEEEEcC
Confidence 9998775433468999999876321 112467789999 998886544
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.4e-11 Score=114.55 Aligned_cols=119 Identities=16% Similarity=0.125 Sum_probs=93.2
Q ss_pred cchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
...+.+.+.|+.++.++++++|||+|||+|.++..++... +..+++|+|+++.+++.|++|+..+++ ..++.+..
T Consensus 55 ~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~----~~~v~~~~ 130 (205)
T PRK13944 55 ISAPHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY----WGVVEVYH 130 (205)
T ss_pred echHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC----CCcEEEEE
Confidence 3456777888888888899999999999999998877654 356899999999999999999997764 34578899
Q ss_pred eccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 373 CNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 373 ~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+|+.+.....++||.|+++-+.. .+..++.+.|+|| |++++...
T Consensus 131 ~d~~~~~~~~~~fD~Ii~~~~~~--------------~~~~~l~~~L~~g-G~lvi~~~ 174 (205)
T PRK13944 131 GDGKRGLEKHAPFDAIIVTAAAS--------------TIPSALVRQLKDG-GVLVIPVE 174 (205)
T ss_pred CCcccCCccCCCccEEEEccCcc--------------hhhHHHHHhcCcC-cEEEEEEc
Confidence 99987543446899999986532 1112577899999 99877543
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.6e-11 Score=125.78 Aligned_cols=128 Identities=17% Similarity=0.190 Sum_probs=94.9
Q ss_pred cchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
...+.+...++.++...++.+|||+|||+|++++.+|.. ...|+|+|+++.|++.|++|+..+++ .++.++++
T Consensus 275 ~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~~-----~nv~~~~~ 347 (431)
T TIGR00479 275 GQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNGI-----ANVEFLAG 347 (431)
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhCC-----CceEEEeC
Confidence 355566666777777778889999999999999999876 46899999999999999999998765 35789999
Q ss_pred ccccc-c---CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHH
Q psy19 374 NVRQL-C---FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALH 441 (494)
Q Consensus 374 Da~~l-~---~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~ 441 (494)
|+.+. + ..+.+||+|++|||+. +.. ..+++.+.+ ++|+ + ++++++++..+.+.+.
T Consensus 348 d~~~~l~~~~~~~~~~D~vi~dPPr~---G~~-------~~~l~~l~~-l~~~-~-ivyvsc~p~tlard~~ 406 (431)
T TIGR00479 348 TLETVLPKQPWAGQIPDVLLLDPPRK---GCA-------AEVLRTIIE-LKPE-R-IVYVSCNPATLARDLE 406 (431)
T ss_pred CHHHHHHHHHhcCCCCCEEEECcCCC---CCC-------HHHHHHHHh-cCCC-E-EEEEcCCHHHHHHHHH
Confidence 98763 1 2235799999999953 321 233334443 6665 4 6677788766655544
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.6e-11 Score=129.61 Aligned_cols=125 Identities=20% Similarity=0.203 Sum_probs=96.2
Q ss_pred HHHHHhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-
Q psy19 302 NMVRLASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC- 379 (494)
Q Consensus 302 ~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~- 379 (494)
.++.+..+.+|.+|||.|||+|+..+.++... +...|+|+|+++.+++.+++|++.+|+ ..+.++++|+..++
T Consensus 243 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~-----~~v~~~~~D~~~~~~ 317 (434)
T PRK14901 243 LVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL-----KSIKILAADSRNLLE 317 (434)
T ss_pred HHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-----CeEEEEeCChhhccc
Confidence 34445677889999999999999998877653 346899999999999999999998875 23788999998875
Q ss_pred ---CCCCCeeEEEEcCCC-cccc-CCc---------c---chHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 380 ---FKPACVDGIVTDLPF-GKRV-GSK---------S---NNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 380 ---~~~~~~D~IVtNPPY-G~r~-~~~---------~---~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
...++||.|++|||. |... ... . .+..+...+|..+.++|||| |++++.|+.
T Consensus 318 ~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpg-G~lvystcs 386 (434)
T PRK14901 318 LKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPG-GTLVYATCT 386 (434)
T ss_pred ccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEeCC
Confidence 334689999999995 2111 000 1 12334568899999999999 999988763
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-11 Score=101.57 Aligned_cols=95 Identities=20% Similarity=0.246 Sum_probs=75.0
Q ss_pred EEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEEcCCCc
Q psy19 316 LDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFG 395 (494)
Q Consensus 316 LDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPPYG 395 (494)
||+|||+|..+..++.. ++..++|+|+++.+++.++++....+ +.+.++|+.++|+++++||+|+++==+.
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~--------~~~~~~d~~~l~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEG--------VSFRQGDAEDLPFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTST--------EEEEESBTTSSSS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccC--------chheeehHHhCcccccccccccccccee
Confidence 79999999999988887 67899999999999999999887443 3489999999999999999999963222
Q ss_pred cccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 396 KRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 396 ~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
.- +-...+++++.|+|||| |++++
T Consensus 72 ~~--------~~~~~~l~e~~rvLk~g-G~l~~ 95 (95)
T PF08241_consen 72 HL--------EDPEAALREIYRVLKPG-GRLVI 95 (95)
T ss_dssp GS--------SHHHHHHHHHHHHEEEE-EEEEE
T ss_pred ec--------cCHHHHHHHHHHHcCcC-eEEeC
Confidence 11 22557888999999999 98875
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.8e-11 Score=118.64 Aligned_cols=120 Identities=18% Similarity=0.149 Sum_probs=95.1
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
.+.+...+|..|+.+....++.+|||+|||+|.++..++.. +..++|+|+++.+++.|+.+... ..++
T Consensus 23 ~~~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~----------~~~~ 90 (251)
T PRK10258 23 HAELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAA----------DHYL 90 (251)
T ss_pred HHHHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCC----------CCEE
Confidence 34567778888888776666789999999999988877765 67999999999999999987531 2578
Q ss_pred eeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 372 VCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 372 ~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
++|+..+++++++||+|++|.++.. . .+ ...++.++.++|+|| |.+++.+..
T Consensus 91 ~~d~~~~~~~~~~fD~V~s~~~l~~-~---~d----~~~~l~~~~~~Lk~g-G~l~~~~~~ 142 (251)
T PRK10258 91 AGDIESLPLATATFDLAWSNLAVQW-C---GN----LSTALRELYRVVRPG-GVVAFTTLV 142 (251)
T ss_pred EcCcccCcCCCCcEEEEEECchhhh-c---CC----HHHHHHHHHHHcCCC-eEEEEEeCC
Confidence 8999988887789999999987542 1 12 346677899999999 999887653
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.6e-11 Score=119.47 Aligned_cols=127 Identities=20% Similarity=0.231 Sum_probs=87.0
Q ss_pred chHHHHHHHHHHhC-CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 295 LKPTIAYNMVRLAS-PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 295 L~e~lAa~ll~la~-~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
..||..-+|-.+.. ..+|.+|||.|||||-++|.|++.+. ..|+|+|+||.+++.|++|+..|++. .++.+.
T Consensus 144 ~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~----~~~~v~-- 216 (295)
T PF06325_consen 144 HHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVE----DRIEVS-- 216 (295)
T ss_dssp HCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-T----TCEEES--
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCC----eeEEEE--
Confidence 34444444443333 35788999999999999999999843 47999999999999999999999873 333332
Q ss_pred ccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE---EecCHHHHHHHHHh
Q psy19 374 NVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL---LTSDRKHLIQALHI 442 (494)
Q Consensus 374 Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl---lt~~~~~l~~~l~~ 442 (494)
... ....+.||+|++|.= ......++..+.++|+|| |.+++ +......+.+++..
T Consensus 217 ~~~--~~~~~~~dlvvANI~-----------~~vL~~l~~~~~~~l~~~-G~lIlSGIl~~~~~~v~~a~~~ 274 (295)
T PF06325_consen 217 LSE--DLVEGKFDLVVANIL-----------ADVLLELAPDIASLLKPG-GYLILSGILEEQEDEVIEAYKQ 274 (295)
T ss_dssp CTS--CTCCS-EEEEEEES------------HHHHHHHHHHCHHHEEEE-EEEEEEEEEGGGHHHHHHHHHT
T ss_pred Eec--ccccccCCEEEECCC-----------HHHHHHHHHHHHHhhCCC-CEEEEccccHHHHHHHHHHHHC
Confidence 111 122378999999852 233445666899999998 98776 33345556777754
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.6e-11 Score=126.99 Aligned_cols=131 Identities=20% Similarity=0.223 Sum_probs=100.7
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
.....+.|....+..+...++++|+|++||.|+|++.+|.. ...|+|+|+++.+++.|++|++.||+ .++.+.
T Consensus 274 N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i-----~N~~f~ 346 (432)
T COG2265 274 NPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGI-----DNVEFI 346 (432)
T ss_pred CHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCC-----CcEEEE
Confidence 34456666666666667778899999999999999999966 57999999999999999999999976 237899
Q ss_pred eeccccccCC---CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHh
Q psy19 372 VCNVRQLCFK---PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHI 442 (494)
Q Consensus 372 ~~Da~~l~~~---~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~ 442 (494)
.+|+.++... ...+|.||.||| |.|... .+++.+.+.- | -+++.+++++..+.+.+..
T Consensus 347 ~~~ae~~~~~~~~~~~~d~VvvDPP---R~G~~~-------~~lk~l~~~~-p--~~IvYVSCNP~TlaRDl~~ 407 (432)
T COG2265 347 AGDAEEFTPAWWEGYKPDVVVVDPP---RAGADR-------EVLKQLAKLK-P--KRIVYVSCNPATLARDLAI 407 (432)
T ss_pred eCCHHHHhhhccccCCCCEEEECCC---CCCCCH-------HHHHHHHhcC-C--CcEEEEeCCHHHHHHHHHH
Confidence 9999887432 247899999999 776642 3344454443 2 3588899999877766653
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.7e-11 Score=119.19 Aligned_cols=115 Identities=14% Similarity=0.161 Sum_probs=91.2
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
.+...+..++......++.+|||+|||+|.++..++..+|+..++|+|+++.|++.|+++ + +.+.++|
T Consensus 13 ~~~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----~--------~~~~~~d 80 (255)
T PRK14103 13 HRGRPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----G--------VDARTGD 80 (255)
T ss_pred HhhCHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----C--------CcEEEcC
Confidence 444455667777777788999999999999999999888888999999999999999763 1 3678899
Q ss_pred cccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 375 VRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 375 a~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+.+++ ++++||+|+++..+.. +. + ...+++++.++|+|| |++++..+
T Consensus 81 ~~~~~-~~~~fD~v~~~~~l~~-~~---d----~~~~l~~~~~~Lkpg-G~l~~~~~ 127 (255)
T PRK14103 81 VRDWK-PKPDTDVVVSNAALQW-VP---E----HADLLVRWVDELAPG-SWIAVQVP 127 (255)
T ss_pred hhhCC-CCCCceEEEEehhhhh-CC---C----HHHHHHHHHHhCCCC-cEEEEEcC
Confidence 98774 3478999999987652 22 2 245667899999999 99888654
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.6e-11 Score=118.41 Aligned_cols=117 Identities=10% Similarity=0.110 Sum_probs=94.0
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
.+...+..++......++.+|||+|||+|.++..++...++..++|+|+++.+++.|+++.. .+.+..+|
T Consensus 15 ~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~----------~~~~~~~d 84 (258)
T PRK01683 15 ERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP----------DCQFVEAD 84 (258)
T ss_pred HhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC----------CCeEEECc
Confidence 44556777777777788899999999999999999988888899999999999999998753 24678889
Q ss_pred cccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 375 VRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 375 a~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+..+.. ..+||+|++|..+.. +. + ...+++++.++|+|| |.+++.++
T Consensus 85 ~~~~~~-~~~fD~v~~~~~l~~-~~---d----~~~~l~~~~~~Lkpg-G~~~~~~~ 131 (258)
T PRK01683 85 IASWQP-PQALDLIFANASLQW-LP---D----HLELFPRLVSLLAPG-GVLAVQMP 131 (258)
T ss_pred hhccCC-CCCccEEEEccChhh-CC---C----HHHHHHHHHHhcCCC-cEEEEECC
Confidence 877643 358999999987642 22 2 346777899999999 99888664
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.8e-11 Score=113.43 Aligned_cols=109 Identities=14% Similarity=0.087 Sum_probs=83.7
Q ss_pred HHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCC
Q psy19 305 RLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPAC 384 (494)
Q Consensus 305 ~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~ 384 (494)
......++.+|||+|||+|.+++.+|.. +..|+|+|+++.|++.+++++...++ .+.+...|+...+++ ++
T Consensus 24 ~~~~~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~------~v~~~~~d~~~~~~~-~~ 94 (195)
T TIGR00477 24 EAVKTVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENL------PLRTDAYDINAAALN-ED 94 (195)
T ss_pred HHhccCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCC------CceeEeccchhcccc-CC
Confidence 3334445679999999999999999986 67999999999999999999886654 145677787665554 57
Q ss_pred eeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 385 VDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 385 ~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
||+|+++.+|.. +.. .....+++++.++|+|| |.++++
T Consensus 95 fD~I~~~~~~~~-~~~-----~~~~~~l~~~~~~Lkpg-G~lli~ 132 (195)
T TIGR00477 95 YDFIFSTVVFMF-LQA-----GRVPEIIANMQAHTRPG-GYNLIV 132 (195)
T ss_pred CCEEEEeccccc-CCH-----HHHHHHHHHHHHHhCCC-cEEEEE
Confidence 999999988752 211 12446677899999999 986665
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.8e-11 Score=121.86 Aligned_cols=128 Identities=19% Similarity=0.225 Sum_probs=85.2
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
.....+.|...++.+++..++ .|||++||+|||++.+|.. ...|+|+|+++.|++.|++|++.+++ .++.++
T Consensus 178 N~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~i-----~n~~f~ 249 (352)
T PF05958_consen 178 NPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNGI-----DNVEFI 249 (352)
T ss_dssp BHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT-------SEEEE
T ss_pred cHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcCC-----CcceEE
Confidence 445667777777777777666 7999999999999999987 56899999999999999999999875 346777
Q ss_pred eecccccc----------------CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHH
Q psy19 372 VCNVRQLC----------------FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKH 435 (494)
Q Consensus 372 ~~Da~~l~----------------~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~ 435 (494)
.+++.++. .....+|+||.||| |.|.... ++..+. ++ .+++.+++++..
T Consensus 250 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPP---R~G~~~~-------~~~~~~---~~--~~ivYvSCnP~t 314 (352)
T PF05958_consen 250 RGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPP---RAGLDEK-------VIELIK---KL--KRIVYVSCNPAT 314 (352)
T ss_dssp E--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE------TT-SCHH-------HHHHHH---HS--SEEEEEES-HHH
T ss_pred EeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCC---CCCchHH-------HHHHHh---cC--CeEEEEECCHHH
Confidence 77654431 11236899999999 7765432 122222 22 579999999987
Q ss_pred HHHHHHh
Q psy19 436 LIQALHI 442 (494)
Q Consensus 436 l~~~l~~ 442 (494)
+.+.+..
T Consensus 315 laRDl~~ 321 (352)
T PF05958_consen 315 LARDLKI 321 (352)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766653
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.2e-11 Score=111.01 Aligned_cols=88 Identities=17% Similarity=0.197 Sum_probs=75.9
Q ss_pred HHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc
Q psy19 300 AYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC 379 (494)
Q Consensus 300 Aa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~ 379 (494)
+..|+..+.+.++..|||+|||+|.+..+++.. +.+++|+|+|+.+++.+++|+.. ..+++++++|+.+++
T Consensus 2 ~~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~-------~~~v~ii~~D~~~~~ 72 (169)
T smart00650 2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA-------ADNLTVIHGDALKFD 72 (169)
T ss_pred HHHHHHhcCCCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc-------CCCEEEEECchhcCC
Confidence 456777788888899999999999999999887 57899999999999999999863 135689999999987
Q ss_pred CCCCCeeEEEEcCCCcc
Q psy19 380 FKPACVDGIVTDLPFGK 396 (494)
Q Consensus 380 ~~~~~~D~IVtNPPYG~ 396 (494)
+++..+|.|++||||..
T Consensus 73 ~~~~~~d~vi~n~Py~~ 89 (169)
T smart00650 73 LPKLQPYKVVGNLPYNI 89 (169)
T ss_pred ccccCCCEEEECCCccc
Confidence 76557999999999974
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.1e-11 Score=113.34 Aligned_cols=162 Identities=14% Similarity=0.186 Sum_probs=90.0
Q ss_pred cchHHHHHHHHHHh-CC---CCCCEEEEEcCCcChHHHHHHhcCCC--CeEEEEeCCHHHHHHHHHHHHhccC---C---
Q psy19 294 TLKPTIAYNMVRLA-SP---IPGDVFLDPMCGGGTIPVECSLSYPH--TFFVCGDINEKLVLKTQANVLHNSG---N--- 361 (494)
Q Consensus 294 ~L~e~lAa~ll~la-~~---~~g~~VLDP~CGSGtilIEAA~~~~~--~~v~G~Did~~al~~Ar~Nl~~~g~---~--- 361 (494)
+.+-.||..+.+.+ .. ...-+++|||||+|.++.-..+.... ..|+|+|||+.+++.|++|+..... +
T Consensus 30 ~FPVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~ 109 (246)
T PF11599_consen 30 AFPVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARR 109 (246)
T ss_dssp ---HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHH
Confidence 34556666666655 22 34568999999999999887776433 4799999999999999999975321 0
Q ss_pred -------------------------------CCcccceeeeeecccccc-----CCCCCeeEEEEcCCCccccCCcc-ch
Q psy19 362 -------------------------------LNRELKVSPLVCNVRQLC-----FKPACVDGIVTDLPFGKRVGSKS-NN 404 (494)
Q Consensus 362 -------------------------------~~~~~~i~~~~~Da~~l~-----~~~~~~D~IVtNPPYG~r~~~~~-~~ 404 (494)
.+-.....+.+.|+++.. ......|+||||.|||.+..... ..
T Consensus 110 ~eL~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~ 189 (246)
T PF11599_consen 110 EELRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGS 189 (246)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCC
Confidence 000112446677777631 11235799999999999876554 23
Q ss_pred HHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHhccccceeeeeEEEccCCceEEEE
Q psy19 405 FLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVF 465 (494)
Q Consensus 405 ~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~~~~l~~~~~~~~v~~Ggl~~~i~ 465 (494)
..-..++|..++.+| |. .-++.++....-+.. +. ++..+ .+.+|.-...+|
T Consensus 190 ~~p~~~ml~~l~~vL-p~-~sVV~v~~k~~Ki~~-----~~-~r~~~--rlKvGkR~~~l~ 240 (246)
T PF11599_consen 190 GGPVAQMLNSLAPVL-PE-RSVVAVSDKGRKIPH-----DR-FRRLE--RLKVGKRQAALF 240 (246)
T ss_dssp HHHHHHHHHHHHCCS--T-T-EEEEEESSSS--------TT-S--SE--EEEETTEEEEEE
T ss_pred CCcHHHHHHHHHhhC-CC-CcEEEEecCCccccc-----ch-hHHHH--HHhccceEEEEE
Confidence 445678999999999 65 544445443221221 11 23333 455666665555
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.7e-11 Score=129.62 Aligned_cols=119 Identities=19% Similarity=0.195 Sum_probs=92.5
Q ss_pred HHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc--CCC
Q psy19 305 RLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC--FKP 382 (494)
Q Consensus 305 ~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~--~~~ 382 (494)
.+..+.++.+|||+|||+|.++..++...|+..++|+|+++.|++.|++++...+ ..+.++++|+.+++ +++
T Consensus 412 ~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g------~~ie~I~gDa~dLp~~fed 485 (677)
T PRK06922 412 IILDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG------RSWNVIKGDAINLSSSFEK 485 (677)
T ss_pred HHhhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC------CCeEEEEcchHhCccccCC
Confidence 3456667899999999999999888887888999999999999999999876443 23578889998876 667
Q ss_pred CCeeEEEEcCCCccccC-----CccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 383 ACVDGIVTDLPFGKRVG-----SKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 383 ~~~D~IVtNPPYG~r~~-----~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
++||+|++++++..-.. .......-...+++++.++|||| |++++.-
T Consensus 486 eSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPG-GrLII~D 537 (677)
T PRK06922 486 ESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPG-GRIIIRD 537 (677)
T ss_pred CCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCC-cEEEEEe
Confidence 89999999987642211 00011234567888999999999 9998863
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.5e-11 Score=112.85 Aligned_cols=107 Identities=13% Similarity=0.118 Sum_probs=83.8
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeE
Q psy19 308 SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG 387 (494)
Q Consensus 308 ~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~ 387 (494)
...++.+|||+|||+|.+++.+|.. +..|+|+|+++.|++.|++++...++ ..+++...|+..+++. +.||+
T Consensus 27 ~~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~-----~~v~~~~~d~~~~~~~-~~fD~ 98 (197)
T PRK11207 27 KVVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENL-----DNLHTAVVDLNNLTFD-GEYDF 98 (197)
T ss_pred ccCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCC-----CcceEEecChhhCCcC-CCcCE
Confidence 4446689999999999999999886 67999999999999999999987654 2357788898877664 57999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
|+++..+.. +. ......++..+.++|+|| |.++++
T Consensus 99 I~~~~~~~~-~~-----~~~~~~~l~~i~~~Lkpg-G~~~~~ 133 (197)
T PRK11207 99 ILSTVVLMF-LE-----AKTIPGLIANMQRCTKPG-GYNLIV 133 (197)
T ss_pred EEEecchhh-CC-----HHHHHHHHHHHHHHcCCC-cEEEEE
Confidence 999865421 11 122456777999999999 986554
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=7e-11 Score=126.65 Aligned_cols=123 Identities=17% Similarity=0.157 Sum_probs=94.9
Q ss_pred HHHHhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC
Q psy19 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK 381 (494)
Q Consensus 303 ll~la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~ 381 (494)
.+.+..+.+|..|||+|||+|..++.++.. ..+..|+|+|+++.+++.+++|++..|+ ..+.+.++|+..++ +
T Consensus 242 ~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-----~~v~~~~~Da~~~~-~ 315 (445)
T PRK14904 242 ACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-----TIIETIEGDARSFS-P 315 (445)
T ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-----CeEEEEeCcccccc-c
Confidence 334556778899999999999988776653 2346899999999999999999998765 24788999998875 3
Q ss_pred CCCeeEEEEcCCCcc-cc-C---------Ccc---chHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 382 PACVDGIVTDLPFGK-RV-G---------SKS---NNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 382 ~~~~D~IVtNPPYG~-r~-~---------~~~---~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+++||.|++|||+.. .. . ... .+..+...+|..+.++|+|| |++++.|+.
T Consensus 316 ~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg-G~lvystcs 379 (445)
T PRK14904 316 EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPG-GVLVYATCS 379 (445)
T ss_pred CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEEeCC
Confidence 468999999999721 11 0 011 12345678999999999999 999998874
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.3e-10 Score=110.38 Aligned_cols=111 Identities=22% Similarity=0.286 Sum_probs=80.9
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEE
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGI 388 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~I 388 (494)
..++.+|||+|||+|.+++.++...+ ..++|+|+|+.+++.|++|+..+++ ...+.+..+| .+||+|
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~----~~~~~~~~~~--------~~fD~V 183 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGV----ELNVYLPQGD--------LKADVI 183 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCC----CceEEEccCC--------CCcCEE
Confidence 35788999999999999998777643 3699999999999999999998764 1222222222 279999
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec---CHHHHHHHHHhcc
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS---DRKHLIQALHITS 444 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~---~~~~l~~~l~~~~ 444 (494)
++|.. ...+..+++++.++|+|| |.+++... +...+...+...|
T Consensus 184 vani~-----------~~~~~~l~~~~~~~Lkpg-G~lilsgi~~~~~~~v~~~l~~~G 230 (250)
T PRK00517 184 VANIL-----------ANPLLELAPDLARLLKPG-GRLILSGILEEQADEVLEAYEEAG 230 (250)
T ss_pred EEcCc-----------HHHHHHHHHHHHHhcCCC-cEEEEEECcHhhHHHHHHHHHHCC
Confidence 99853 123556778899999999 99887533 2334555666555
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.8e-11 Score=119.38 Aligned_cols=111 Identities=22% Similarity=0.286 Sum_probs=81.6
Q ss_pred HHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC
Q psy19 302 NMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK 381 (494)
Q Consensus 302 ~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~ 381 (494)
.++..++.++|.+|||+|||-|++++.+|..+ +++|+|+.+++..++.|++.+...|+ .+.+.+...|..+++
T Consensus 53 ~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl----~~~v~v~~~D~~~~~-- 125 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGL----EDRVEVRLQDYRDLP-- 125 (273)
T ss_dssp HHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTS----SSTEEEEES-GGG----
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEEeeccccC--
Confidence 34555678999999999999999999999987 78999999999999999999997765 567889999999875
Q ss_pred CCCeeEEEEcCCCccccCCccch-HHHHHHHHHHHhhcccCCCcEEEE
Q psy19 382 PACVDGIVTDLPFGKRVGSKSNN-FLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 382 ~~~~D~IVtNPPYG~r~~~~~~~-~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
.+||.||+ ++.-+.+ ..-|..|++.+.++|+|| |++++
T Consensus 126 -~~fD~IvS-------i~~~Ehvg~~~~~~~f~~~~~~Lkpg-G~~~l 164 (273)
T PF02353_consen 126 -GKFDRIVS-------IEMFEHVGRKNYPAFFRKISRLLKPG-GRLVL 164 (273)
T ss_dssp --S-SEEEE-------ESEGGGTCGGGHHHHHHHHHHHSETT-EEEEE
T ss_pred -CCCCEEEE-------EechhhcChhHHHHHHHHHHHhcCCC-cEEEE
Confidence 38999998 2222111 123778888999999999 99885
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-10 Score=115.34 Aligned_cols=110 Identities=21% Similarity=0.237 Sum_probs=87.4
Q ss_pred HhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCC
Q psy19 306 LASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPAC 384 (494)
Q Consensus 306 la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~ 384 (494)
++...++.+|||+|||+|..++.++.. .+..+++|+|+++.+++.|++|....++ .++.+..+|+..+++++++
T Consensus 72 ~~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-----~~v~~~~~d~~~l~~~~~~ 146 (272)
T PRK11873 72 LAELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-----TNVEFRLGEIEALPVADNS 146 (272)
T ss_pred hccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-----CCEEEEEcchhhCCCCCCc
Confidence 345678999999999999987776654 4456899999999999999999987664 2567899999988877779
Q ss_pred eeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 385 VDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 385 ~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
||+|++|.-+.. . .+ ...+++++.++|||| |++++.
T Consensus 147 fD~Vi~~~v~~~-~---~d----~~~~l~~~~r~LkpG-G~l~i~ 182 (272)
T PRK11873 147 VDVIISNCVINL-S---PD----KERVFKEAFRVLKPG-GRFAIS 182 (272)
T ss_pred eeEEEEcCcccC-C---CC----HHHHHHHHHHHcCCC-cEEEEE
Confidence 999999865432 1 12 235667899999999 998874
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-10 Score=111.04 Aligned_cols=121 Identities=13% Similarity=-0.020 Sum_probs=95.0
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
.+...|.+.+.|+.++.+.++.+|||+|||||.+...++... +...++|+|+++.+++.|++|+...++ .++.+
T Consensus 57 ~~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-----~~v~~ 131 (212)
T PRK13942 57 QTISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-----DNVEV 131 (212)
T ss_pred CEeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCeEE
Confidence 345778899999999999999999999999999988777653 346999999999999999999997764 35789
Q ss_pred eeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 371 ~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
.++|+.......+.||+|+++-- . .. +...+.+.|+|| |++++....
T Consensus 132 ~~gd~~~~~~~~~~fD~I~~~~~----~---~~-------~~~~l~~~Lkpg-G~lvi~~~~ 178 (212)
T PRK13942 132 IVGDGTLGYEENAPYDRIYVTAA----G---PD-------IPKPLIEQLKDG-GIMVIPVGS 178 (212)
T ss_pred EECCcccCCCcCCCcCEEEECCC----c---cc-------chHHHHHhhCCC-cEEEEEEcC
Confidence 99998876444578999998521 1 11 112466789999 998886543
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-11 Score=118.18 Aligned_cols=128 Identities=20% Similarity=0.267 Sum_probs=102.9
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHT-FFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~-~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
..|+..+++ -+.+.+++.|.+|||.|.|-|.++|+|+.+ ++ .|+.++.||..++.|..|--..++. ...+.+
T Consensus 117 tdP~~Dt~~--Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~---~~~i~i 189 (287)
T COG2521 117 TDPLEDTLA--KVELVKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELF---EIAIKI 189 (287)
T ss_pred cCcHHHHHh--hhheeccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCcccc---ccccEE
Confidence 456666555 356778888999999999999999999988 66 8999999999999999998766542 235789
Q ss_pred eeeccccc--cCCCCCeeEEEEcCCCccccCCccchHHHHH-HHHHHHhhcccCCCcEEEEEecCH
Q psy19 371 LVCNVRQL--CFKPACVDGIVTDLPFGKRVGSKSNNFLLYR-LFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 371 ~~~Da~~l--~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~-~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
+.+|+.++ .+++.+||+||-||| |++.. .+||. .|.+++.|+|+|| |+++-.++++
T Consensus 190 ilGD~~e~V~~~~D~sfDaIiHDPP---RfS~A---geLYseefY~El~RiLkrg-GrlFHYvG~P 248 (287)
T COG2521 190 ILGDAYEVVKDFDDESFDAIIHDPP---RFSLA---GELYSEEFYRELYRILKRG-GRLFHYVGNP 248 (287)
T ss_pred ecccHHHHHhcCCccccceEeeCCC---ccchh---hhHhHHHHHHHHHHHcCcC-CcEEEEeCCC
Confidence 99999887 578889999999999 33322 13454 3666899999999 9999988754
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-10 Score=111.67 Aligned_cols=100 Identities=20% Similarity=0.222 Sum_probs=73.3
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEE
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGI 388 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~I 388 (494)
..+|++|+|+|||.|.|++.+|...+...|+++|++|.+++..++|++.|++ ...+.++++|++++.. ...+|.|
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv----~~~i~~~~~D~~~~~~-~~~~drv 173 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV----ENRIEVINGDAREFLP-EGKFDRV 173 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-----TTTEEEEES-GGG----TT-EEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC----CCeEEEEcCCHHHhcC-ccccCEE
Confidence 4689999999999999999999865678999999999999999999999976 4567899999999854 5789999
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEE
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRA 426 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~l 426 (494)
|+|+|.... .||..+.+++++| |.+
T Consensus 174 im~lp~~~~------------~fl~~~~~~~~~~-g~i 198 (200)
T PF02475_consen 174 IMNLPESSL------------EFLDAALSLLKEG-GII 198 (200)
T ss_dssp EE--TSSGG------------GGHHHHHHHEEEE-EEE
T ss_pred EECChHHHH------------HHHHHHHHHhcCC-cEE
Confidence 999995421 4556677888887 654
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.5e-10 Score=113.14 Aligned_cols=102 Identities=19% Similarity=0.187 Sum_probs=78.8
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
.++.+|||+|||||.+++.++... ...++|+|+|+.+++.|++|+..+++ ...+.+...|... ...++||+|+
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~~----~~~~~~~~~~~~~--~~~~~fDlVv 230 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQV----SDRLQVKLIYLEQ--PIEGKADVIV 230 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCC----CcceEEEeccccc--ccCCCceEEE
Confidence 467899999999999999888763 35899999999999999999998765 2334555555322 2346899999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+|+. ...+..++.++.++|+|| |.+++..
T Consensus 231 an~~-----------~~~l~~ll~~~~~~Lkpg-G~li~sg 259 (288)
T TIGR00406 231 ANIL-----------AEVIKELYPQFSRLVKPG-GWLILSG 259 (288)
T ss_pred EecC-----------HHHHHHHHHHHHHHcCCC-cEEEEEe
Confidence 9963 123456777899999999 9887743
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-10 Score=114.61 Aligned_cols=108 Identities=14% Similarity=0.179 Sum_probs=85.2
Q ss_pred CCCCCEEEEEcCCcChHHHHHHh--cCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCee
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSL--SYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVD 386 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~--~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D 386 (494)
..++.+|||+|||+|.+++.++. ..|+..++|+|+++.|++.|++|+..++. ..+++++++|+.+++++ .+|
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~----~~~v~~~~~d~~~~~~~--~~D 127 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA----PTPVDVIEGDIRDIAIE--NAS 127 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEeCChhhCCCC--CCC
Confidence 34778999999999999888776 35788999999999999999999987653 34678999999988764 589
Q ss_pred EEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 387 GIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 387 ~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+|+++..+.. +. .. -...+++++.++|+|| |.+++.
T Consensus 128 ~vv~~~~l~~-l~-~~----~~~~~l~~i~~~LkpG-G~l~l~ 163 (247)
T PRK15451 128 MVVLNFTLQF-LE-PS----ERQALLDKIYQGLNPG-GALVLS 163 (247)
T ss_pred EEehhhHHHh-CC-HH----HHHHHHHHHHHhcCCC-CEEEEE
Confidence 9999865431 11 11 1346777899999999 998875
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-10 Score=115.79 Aligned_cols=109 Identities=14% Similarity=0.161 Sum_probs=86.5
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-CCCCCeeEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-FKPACVDGI 388 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~~~~~~D~I 388 (494)
.++.+|||+|||+|.+++.++.. +..++|+|+++.+++.|++++...|+ ..++.++++|+.+++ +.+++||+|
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~----~~~v~~~~~d~~~l~~~~~~~fD~V 116 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGV----SDNMQFIHCAAQDIAQHLETPVDLI 116 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCC----ccceEEEEcCHHHHhhhcCCCCCEE
Confidence 45679999999999999999887 67999999999999999999987654 345789999998873 445789999
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
+++..+.. +. +. ..++.++.++|+|| |.++++..+.
T Consensus 117 ~~~~vl~~-~~---~~----~~~l~~~~~~Lkpg-G~l~i~~~n~ 152 (255)
T PRK11036 117 LFHAVLEW-VA---DP----KSVLQTLWSVLRPG-GALSLMFYNA 152 (255)
T ss_pred EehhHHHh-hC---CH----HHHHHHHHHHcCCC-eEEEEEEECc
Confidence 99765331 11 11 35677899999999 9998775543
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-09 Score=112.71 Aligned_cols=119 Identities=12% Similarity=0.027 Sum_probs=90.8
Q ss_pred chHHHHHHHHHHhCC-CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 295 LKPTIAYNMVRLASP-IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 295 L~e~lAa~ll~la~~-~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
..+.+...++..+.+ .++.+|||+|||+|.+.+.++...++..++|+|+++.+++.|+++.... .+.++.+
T Consensus 96 ~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~--------~i~~i~g 167 (340)
T PLN02490 96 WTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--------ECKIIEG 167 (340)
T ss_pred chHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc--------CCeEEec
Confidence 344454445554544 4678999999999999888887766679999999999999999986522 3468999
Q ss_pred ccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 374 NVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 374 Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
|+.++++++++||+|+++..+.. .. + ...+++++.++|+|| |+++++.
T Consensus 168 D~e~lp~~~~sFDvVIs~~~L~~-~~---d----~~~~L~e~~rvLkPG-G~LvIi~ 215 (340)
T PLN02490 168 DAEDLPFPTDYADRYVSAGSIEY-WP---D----PQRGIKEAYRVLKIG-GKACLIG 215 (340)
T ss_pred cHHhCCCCCCceeEEEEcChhhh-CC---C----HHHHHHHHHHhcCCC-cEEEEEE
Confidence 99998887789999999865432 11 1 135677899999999 9987753
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.6e-10 Score=108.35 Aligned_cols=116 Identities=12% Similarity=0.068 Sum_probs=88.6
Q ss_pred chHHHHHHHHH---HhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 295 LKPTIAYNMVR---LASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 295 L~e~lAa~ll~---la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
.+..+++.++. .+.+++|.+|||.|||+|.+++.++...+...|+|+|+++.|++.+.++++.. .++.++
T Consensus 53 ~r~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-------~nv~~i 125 (226)
T PRK04266 53 RRSKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-------KNIIPI 125 (226)
T ss_pred CccchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-------CCcEEE
Confidence 45667777665 57788999999999999999999988765568999999999999888887632 235678
Q ss_pred eeccccc----cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 372 VCNVRQL----CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 372 ~~Da~~l----~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
.+|+... ++. .+||+|++|.+. . .....+++++.++|||| |++++.
T Consensus 126 ~~D~~~~~~~~~l~-~~~D~i~~d~~~------p----~~~~~~L~~~~r~LKpG-G~lvI~ 175 (226)
T PRK04266 126 LADARKPERYAHVV-EKVDVIYQDVAQ------P----NQAEIAIDNAEFFLKDG-GYLLLA 175 (226)
T ss_pred ECCCCCcchhhhcc-ccCCEEEECCCC------h----hHHHHHHHHHHHhcCCC-cEEEEE
Confidence 8888652 222 469999997652 1 11345677899999999 999883
|
|
| >KOG3191|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-09 Score=101.52 Aligned_cols=148 Identities=16% Similarity=0.268 Sum_probs=106.1
Q ss_pred CCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE
Q psy19 312 GDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt 390 (494)
...++++|||||.+..-.++. .|++...+.||||.|++.+++.++.+++ .++.++.|+..- +..+++|+++.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~------~~~~V~tdl~~~-l~~~~VDvLvf 116 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV------HIDVVRTDLLSG-LRNESVDVLVF 116 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC------ccceeehhHHhh-hccCCccEEEE
Confidence 578999999999887666654 4567788999999999999999998865 257888887764 33389999999
Q ss_pred cCCCcccc-------------CCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH---HHHHHHHHhccccceeeeeEE
Q psy19 391 DLPFGKRV-------------GSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR---KHLIQALHITSALWKCRKQIK 454 (494)
Q Consensus 391 NPPYG~r~-------------~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~---~~l~~~l~~~~~l~~~~~~~~ 454 (494)
||||--.. ....+.++...+++..+-.+|.|. |.+++++... ..+.+.+...+ |.......
T Consensus 117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~-Gv~Ylv~~~~N~p~ei~k~l~~~g--~~~~~~~~ 193 (209)
T KOG3191|consen 117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPR-GVFYLVALRANKPKEILKILEKKG--YGVRIAMQ 193 (209)
T ss_pred CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcC-ceEEeeehhhcCHHHHHHHHhhcc--cceeEEEE
Confidence 99994321 112345677788999999999999 9888876643 33444444433 44444444
Q ss_pred EccCCceEEEEEEee
Q psy19 455 INMSGMKSFVFILNR 469 (494)
Q Consensus 455 v~~Ggl~~~i~v~~~ 469 (494)
-..|+-...|+.+.+
T Consensus 194 Rk~~~E~l~ilkf~r 208 (209)
T KOG3191|consen 194 RKAGGETLSILKFTR 208 (209)
T ss_pred EecCCceEEEEEEEe
Confidence 455666666666554
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.4e-10 Score=114.33 Aligned_cols=123 Identities=14% Similarity=0.061 Sum_probs=92.5
Q ss_pred ccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 291 NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 291 ~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
+|..+.+ +..++......++.+|||+|||+|.++..++..+ ++.++|+|+++.+++.|+.++.. ..++.+
T Consensus 34 ~~gg~~~--~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~-------~~~i~~ 103 (263)
T PTZ00098 34 SSGGIEA--TTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD-------KNKIEF 103 (263)
T ss_pred CCCchHH--HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc-------CCceEE
Confidence 3444444 3446666778899999999999999988877654 57999999999999999998752 235688
Q ss_pred eeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 371 ~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
..+|+...++++++||+|++..-+.. +. ..+ ...+++++.++|||| |++++..
T Consensus 104 ~~~D~~~~~~~~~~FD~V~s~~~l~h-~~-~~d----~~~~l~~i~r~LkPG-G~lvi~d 156 (263)
T PTZ00098 104 EANDILKKDFPENTFDMIYSRDAILH-LS-YAD----KKKLFEKCYKWLKPN-GILLITD 156 (263)
T ss_pred EECCcccCCCCCCCeEEEEEhhhHHh-CC-HHH----HHHHHHHHHHHcCCC-cEEEEEE
Confidence 99999988887789999999643211 11 112 346777899999999 9988753
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.2e-11 Score=101.26 Aligned_cols=97 Identities=22% Similarity=0.345 Sum_probs=73.9
Q ss_pred EEEEcCCcChHHHHHHhcC---CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE-
Q psy19 315 FLDPMCGGGTIPVECSLSY---PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT- 390 (494)
Q Consensus 315 VLDP~CGSGtilIEAA~~~---~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt- 390 (494)
|||+|||+|+.+...+..+ +...++|+|+++.|++.|+++....+. .+++.++|+.+++...++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~------~~~~~~~D~~~l~~~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP------KVRFVQADARDLPFSDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT------TSEEEESCTTCHHHHSSSEEEEEE-
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC------ceEEEECCHhHCcccCCCeeEEEEc
Confidence 7999999999999988775 347999999999999999999986442 468999999999876779999999
Q ss_pred cCCCccccCCccchHHHHHHHHHHHhhcccCCCc
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIG 424 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G 424 (494)
...+.. +. .+-...+++++.++|+|| |
T Consensus 75 ~~~~~~-~~-----~~~~~~ll~~~~~~l~pg-G 101 (101)
T PF13649_consen 75 GLSLHH-LS-----PEELEALLRRIARLLRPG-G 101 (101)
T ss_dssp TTGGGG-SS-----HHHHHHHHHHHHHTEEEE-E
T ss_pred CCccCC-CC-----HHHHHHHHHHHHHHhCCC-C
Confidence 332322 21 223456777899999998 6
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.16 E-value=4e-10 Score=117.70 Aligned_cols=126 Identities=14% Similarity=0.160 Sum_probs=89.2
Q ss_pred cchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
...+.+...+....... +..|||+|||+|+|++.++.. ...|+|+|+++.|++.|++|+..+++ .++.++++
T Consensus 190 ~~~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~~~-----~~v~~~~~ 261 (362)
T PRK05031 190 AVNEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAANGI-----DNVQIIRM 261 (362)
T ss_pred HHHHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHhCC-----CcEEEEEC
Confidence 35566666665555432 357999999999999977765 35899999999999999999998875 25789999
Q ss_pred ccccc-c-CC--------------CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHH
Q psy19 374 NVRQL-C-FK--------------PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLI 437 (494)
Q Consensus 374 Da~~l-~-~~--------------~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~ 437 (494)
|+.+. + +. ...||+||.|||+ .|. +..+++.+.+ + .+++++++++..+.
T Consensus 262 d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR---~G~-------~~~~l~~l~~---~--~~ivyvSC~p~tla 326 (362)
T PRK05031 262 SAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPR---AGL-------DDETLKLVQA---Y--ERILYISCNPETLC 326 (362)
T ss_pred CHHHHHHHHhhcccccccccccccCCCCCEEEECCCC---CCC-------cHHHHHHHHc---c--CCEEEEEeCHHHHH
Confidence 98764 1 11 1258999999996 332 2233333433 3 45788888987676
Q ss_pred HHHHh
Q psy19 438 QALHI 442 (494)
Q Consensus 438 ~~l~~ 442 (494)
+.+..
T Consensus 327 rDl~~ 331 (362)
T PRK05031 327 ENLET 331 (362)
T ss_pred HHHHH
Confidence 65553
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=8e-10 Score=106.77 Aligned_cols=118 Identities=23% Similarity=0.279 Sum_probs=91.9
Q ss_pred HHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc
Q psy19 299 IAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ 377 (494)
Q Consensus 299 lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~ 377 (494)
+-..++.+....++.+|||+|||+|.+++.++..+ +...++|+|+++.+++.|+.+.... ...+.+...|+..
T Consensus 7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~------~~~~~~~~~d~~~ 80 (241)
T PRK08317 7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL------GPNVEFVRGDADG 80 (241)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC------CCceEEEeccccc
Confidence 34455667788889999999999999999998776 6679999999999999999984321 2356788899988
Q ss_pred ccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 378 LCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 378 l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
.++.++.||+|+++--+.. ..+ ...+++++.++|+|| |.+++..+
T Consensus 81 ~~~~~~~~D~v~~~~~~~~----~~~----~~~~l~~~~~~L~~g-G~l~~~~~ 125 (241)
T PRK08317 81 LPFPDGSFDAVRSDRVLQH----LED----PARALAEIARVLRPG-GRVVVLDT 125 (241)
T ss_pred CCCCCCCceEEEEechhhc----cCC----HHHHHHHHHHHhcCC-cEEEEEec
Confidence 8777789999999754331 112 245667899999999 99887654
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.6e-10 Score=121.11 Aligned_cols=114 Identities=15% Similarity=0.185 Sum_probs=89.7
Q ss_pred HHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC
Q psy19 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380 (494)
Q Consensus 301 a~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~ 380 (494)
..++..+.+.++.+|||+|||+|.+++.++... ++.++|+|+++.+++.|+.|+... ..++.+.++|+...++
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~------~~~v~~~~~d~~~~~~ 328 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGR------KCSVEFEVADCTKKTY 328 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcC------CCceEEEEcCcccCCC
Confidence 445566667788899999999999998888765 679999999999999999987622 3457899999998887
Q ss_pred CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
++++||+|++.--+.. + .+ ...+++++.++|+|| |++++..
T Consensus 329 ~~~~fD~I~s~~~l~h-~---~d----~~~~l~~~~r~Lkpg-G~l~i~~ 369 (475)
T PLN02336 329 PDNSFDVIYSRDTILH-I---QD----KPALFRSFFKWLKPG-GKVLISD 369 (475)
T ss_pred CCCCEEEEEECCcccc-c---CC----HHHHHHHHHHHcCCC-eEEEEEE
Confidence 7778999999643321 1 12 346677899999999 9988754
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.7e-10 Score=115.70 Aligned_cols=126 Identities=15% Similarity=0.169 Sum_probs=89.7
Q ss_pred cchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
.+.+.|...++.++...+ ..|||+|||+|+|++.++... ..|+|+|+++.|++.|++|+..+++ .++.++++
T Consensus 181 ~~~~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~-----~~v~~~~~ 252 (353)
T TIGR02143 181 AVNIKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNI-----DNVQIIRM 252 (353)
T ss_pred HHHHHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEEc
Confidence 355666666666655333 469999999999999777663 5899999999999999999998875 24789999
Q ss_pred ccccccC-----------C-----CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHH
Q psy19 374 NVRQLCF-----------K-----PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLI 437 (494)
Q Consensus 374 Da~~l~~-----------~-----~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~ 437 (494)
|+.++-. . ...+|+|+.||| |.|.. ..+++.+.+ | ++++.+++++..+.
T Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP---R~G~~-------~~~l~~l~~---~--~~ivYvsC~p~tla 317 (353)
T TIGR02143 253 SAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPP---RAGLD-------PDTCKLVQA---Y--ERILYISCNPETLK 317 (353)
T ss_pred CHHHHHHHHhhccccccccccccccCCCCEEEECCC---CCCCc-------HHHHHHHHc---C--CcEEEEEcCHHHHH
Confidence 9876411 0 013799999999 44432 222333332 3 56888889987777
Q ss_pred HHHHh
Q psy19 438 QALHI 442 (494)
Q Consensus 438 ~~l~~ 442 (494)
+.+..
T Consensus 318 RDl~~ 322 (353)
T TIGR02143 318 ANLEQ 322 (353)
T ss_pred HHHHH
Confidence 76654
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.8e-10 Score=109.53 Aligned_cols=107 Identities=16% Similarity=0.258 Sum_probs=83.8
Q ss_pred CCCCEEEEEcCCcChHHHHHHhc--CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLS--YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG 387 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~--~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~ 387 (494)
.++.+|||+|||+|.+++.++.. +|+++++|+|+++.|++.|++++...+. ..++.++++|+..++++ .+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~--~~d~ 125 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS----EIPVEILCNDIRHVEIK--NASM 125 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEECChhhCCCC--CCCE
Confidence 47789999999999999988875 3678999999999999999999986542 34578999999988764 5888
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
|+++-.... + ...+ ...+++++.++|+|| |.+++.
T Consensus 126 v~~~~~l~~-~-~~~~----~~~~l~~i~~~Lkpg-G~l~i~ 160 (239)
T TIGR00740 126 VILNFTLQF-L-PPED----RIALLTKIYEGLNPN-GVLVLS 160 (239)
T ss_pred Eeeecchhh-C-CHHH----HHHHHHHHHHhcCCC-eEEEEe
Confidence 988654331 1 1111 346777999999999 988775
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.1e-10 Score=113.88 Aligned_cols=116 Identities=21% Similarity=0.273 Sum_probs=88.6
Q ss_pred cchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCC---CeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPH---TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~---~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
++...++..|..... ..+.+|||+|||+|.++..++...+. ..++|+|+++.|++.|+++.. .+.+
T Consensus 69 ~l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~----------~~~~ 137 (272)
T PRK11088 69 PLRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP----------QVTF 137 (272)
T ss_pred HHHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC----------CCeE
Confidence 577777776665543 35578999999999998887766542 479999999999999987532 2468
Q ss_pred eeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHH
Q psy19 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHL 436 (494)
Q Consensus 371 ~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l 436 (494)
..+|+.++|+++++||+|++.- . . .+++++.|+|+|| |+++++++....+
T Consensus 138 ~~~d~~~lp~~~~sfD~I~~~~--~-----~--------~~~~e~~rvLkpg-G~li~~~p~~~~l 187 (272)
T PRK11088 138 CVASSHRLPFADQSLDAIIRIY--A-----P--------CKAEELARVVKPG-GIVITVTPGPRHL 187 (272)
T ss_pred EEeecccCCCcCCceeEEEEec--C-----C--------CCHHHHHhhccCC-CEEEEEeCCCcch
Confidence 8899999998888999999842 1 1 1234788999999 9999998875433
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.5e-10 Score=116.80 Aligned_cols=122 Identities=20% Similarity=0.176 Sum_probs=88.0
Q ss_pred chHHHHHHHHHHhCCC-CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 295 LKPTIAYNMVRLASPI-PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 295 L~e~lAa~ll~la~~~-~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
....|...++...... ++.+|||+|||+|.+++.+|...+...|+++|+|+.+++.+++|++.+++. .+.+.++
T Consensus 40 ~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-----~~~v~~~ 114 (382)
T PRK04338 40 LNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-----NEKVFNK 114 (382)
T ss_pred chhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-----ceEEEhh
Confidence 4445555555544332 457899999999999999987654458999999999999999999998752 3468899
Q ss_pred ccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHH
Q psy19 374 NVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRK 434 (494)
Q Consensus 374 Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~ 434 (494)
|+..+......||+|+.||| |.. ..|+..+.+.++++ |.+++-..|..
T Consensus 115 Da~~~l~~~~~fD~V~lDP~-Gs~-----------~~~l~~al~~~~~~-gilyvSAtD~~ 162 (382)
T PRK04338 115 DANALLHEERKFDVVDIDPF-GSP-----------APFLDSAIRSVKRG-GLLCVTATDTA 162 (382)
T ss_pred hHHHHHhhcCCCCEEEECCC-CCc-----------HHHHHHHHHHhcCC-CEEEEEecCch
Confidence 99775221357999999986 421 13444556677887 87777655543
|
|
| >KOG1540|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.4e-10 Score=108.44 Aligned_cols=115 Identities=20% Similarity=0.196 Sum_probs=90.2
Q ss_pred HHhCCCCCCEEEEEcCCcChHHHHHHhcCCC------CeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc
Q psy19 305 RLASPIPGDVFLDPMCGGGTIPVECSLSYPH------TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378 (494)
Q Consensus 305 ~la~~~~g~~VLDP~CGSGtilIEAA~~~~~------~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l 378 (494)
...++.++..+||.+||||-++.-....-+. .+|+..||+|.|+..+++.+...++.. ...+.++.+|+.++
T Consensus 94 ~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~--~~~~~w~~~dAE~L 171 (296)
T KOG1540|consen 94 SKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKA--SSRVEWVEGDAEDL 171 (296)
T ss_pred hccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCc--CCceEEEeCCcccC
Confidence 4456677899999999999887766554332 689999999999999999997655422 23478999999999
Q ss_pred cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 379 CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 379 ~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
||++.+||.... -||.|--.+ ..+.++++.|+|||| |++.++-
T Consensus 172 pFdd~s~D~yTi--afGIRN~th------~~k~l~EAYRVLKpG-Grf~cLe 214 (296)
T KOG1540|consen 172 PFDDDSFDAYTI--AFGIRNVTH------IQKALREAYRVLKPG-GRFSCLE 214 (296)
T ss_pred CCCCCcceeEEE--ecceecCCC------HHHHHHHHHHhcCCC-cEEEEEE
Confidence 999999998776 477765443 346777999999999 9888753
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.2e-10 Score=117.60 Aligned_cols=110 Identities=19% Similarity=0.221 Sum_probs=86.1
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEE
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGI 388 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~I 388 (494)
+.++.+|||+|||+|.++..++.. +..|+|+|+++++++.|+.++...+. ...+.++++|+.++++.+++||+|
T Consensus 129 ~~~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~----~~~i~~~~~dae~l~~~~~~FD~V 202 (322)
T PLN02396 129 PFEGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPV----TSTIEYLCTTAEKLADEGRKFDAV 202 (322)
T ss_pred CCCCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCc----ccceeEEecCHHHhhhccCCCCEE
Confidence 346789999999999999888765 78999999999999999998765432 245789999999887766799999
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
++.=- +....+ ...|++++.++|||| |.+++.+.+.
T Consensus 203 i~~~v----LeHv~d----~~~~L~~l~r~LkPG-G~liist~nr 238 (322)
T PLN02396 203 LSLEV----IEHVAN----PAEFCKSLSALTIPN-GATVLSTINR 238 (322)
T ss_pred EEhhH----HHhcCC----HHHHHHHHHHHcCCC-cEEEEEECCc
Confidence 99321 111112 246888999999999 9999887654
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.12 E-value=8e-10 Score=112.62 Aligned_cols=116 Identities=12% Similarity=0.105 Sum_probs=90.7
Q ss_pred HHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc
Q psy19 299 IAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378 (494)
Q Consensus 299 lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l 378 (494)
.+..++......++.+|||+|||+|+++++++..+|+.+++++|+ +.+++.|++|+...|+ .++++++.+|+++.
T Consensus 137 ~~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl----~~rv~~~~~d~~~~ 211 (306)
T TIGR02716 137 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV----ADRMRGIAVDIYKE 211 (306)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCc----cceEEEEecCccCC
Confidence 345566677778889999999999999999999999999999998 8999999999997764 45789999999876
Q ss_pred cCCCCCeeEEEE-cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 379 CFKPACVDGIVT-DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 379 ~~~~~~~D~IVt-NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+++ .+|+|++ +-.+. -..+....+++++.+.|+|| |+++++
T Consensus 212 ~~~--~~D~v~~~~~lh~-------~~~~~~~~il~~~~~~L~pg-G~l~i~ 253 (306)
T TIGR02716 212 SYP--EADAVLFCRILYS-------ANEQLSTIMCKKAFDAMRSG-GRLLIL 253 (306)
T ss_pred CCC--CCCEEEeEhhhhc-------CChHHHHHHHHHHHHhcCCC-CEEEEE
Confidence 554 3587764 22111 01122346777899999999 999886
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.9e-09 Score=101.66 Aligned_cols=117 Identities=20% Similarity=0.294 Sum_probs=89.8
Q ss_pred HHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc
Q psy19 300 AYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378 (494)
Q Consensus 300 Aa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l 378 (494)
...++......++.+|||+|||+|.+++.++..++ ...++|+|+++.+++.|++++..++. ...+.+..+|+..+
T Consensus 40 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~~ 115 (239)
T PRK00216 40 RRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL----SGNVEFVQGDAEAL 115 (239)
T ss_pred HHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc----ccCeEEEecccccC
Confidence 34455556666788999999999999999988765 58999999999999999999875432 34568899999888
Q ss_pred cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 379 CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 379 ~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
++..+.||+|+++- +.. ...+ ...++..+.++|+|| |.++++
T Consensus 116 ~~~~~~~D~I~~~~--~l~--~~~~----~~~~l~~~~~~L~~g-G~li~~ 157 (239)
T PRK00216 116 PFPDNSFDAVTIAF--GLR--NVPD----IDKALREMYRVLKPG-GRLVIL 157 (239)
T ss_pred CCCCCCccEEEEec--ccc--cCCC----HHHHHHHHHHhccCC-cEEEEE
Confidence 76667899999842 211 1122 345667899999999 988775
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-09 Score=105.59 Aligned_cols=115 Identities=14% Similarity=0.014 Sum_probs=90.7
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
..|.+.+.|+.++..+++.+|||+|||+|.+...++... ..++++|+++.+++.|++|+...++ ..+.+..+|
T Consensus 62 ~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~-----~~v~~~~~d 134 (212)
T PRK00312 62 SQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGL-----HNVSVRHGD 134 (212)
T ss_pred CcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCC-----CceEEEECC
Confidence 567788888888888899999999999999987766663 4899999999999999999997754 236889999
Q ss_pred cccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 375 VRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 375 a~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+.......+.||+|+++.+.. .+.+.+.+.|+|| |++++...
T Consensus 135 ~~~~~~~~~~fD~I~~~~~~~--------------~~~~~l~~~L~~g-G~lv~~~~ 176 (212)
T PRK00312 135 GWKGWPAYAPFDRILVTAAAP--------------EIPRALLEQLKEG-GILVAPVG 176 (212)
T ss_pred cccCCCcCCCcCEEEEccCch--------------hhhHHHHHhcCCC-cEEEEEEc
Confidence 865422336899999986532 1123467899999 99888766
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-09 Score=106.52 Aligned_cols=132 Identities=17% Similarity=0.237 Sum_probs=107.8
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
+..+-|.=++.++..++..+|.+|+|.|.|||.+...+|.. .|..+++.+|+.++.++.|++|++.+++ .+++.+
T Consensus 75 tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l----~d~v~~ 150 (256)
T COG2519 75 TQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL----GDRVTL 150 (256)
T ss_pred CceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc----ccceEE
Confidence 44566666778888999999999999999999999888863 5668999999999999999999998865 455788
Q ss_pred eeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHh
Q psy19 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHI 442 (494)
Q Consensus 371 ~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~ 442 (494)
..+|+.+.-.. ..||+|+.|.| +-+ ..++.+.+.|+|| |.+++++|..+.+.+.+..
T Consensus 151 ~~~Dv~~~~~~-~~vDav~LDmp---------~PW----~~le~~~~~Lkpg-g~~~~y~P~veQv~kt~~~ 207 (256)
T COG2519 151 KLGDVREGIDE-EDVDAVFLDLP---------DPW----NVLEHVSDALKPG-GVVVVYSPTVEQVEKTVEA 207 (256)
T ss_pred Eeccccccccc-cccCEEEEcCC---------ChH----HHHHHHHHHhCCC-cEEEEEcCCHHHHHHHHHH
Confidence 88999887554 48999999988 112 3555799999999 9999999987666665443
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.1e-10 Score=111.00 Aligned_cols=110 Identities=22% Similarity=0.295 Sum_probs=90.7
Q ss_pred HHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCC
Q psy19 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKP 382 (494)
Q Consensus 303 ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~ 382 (494)
++..++.++|.+|||+|||-|.+++.||..+ +++|+|+++++.+.+.+++.+...|+ ..+++++..|..++.
T Consensus 64 ~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl----~~~v~v~l~d~rd~~--- 135 (283)
T COG2230 64 ILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGL----EDNVEVRLQDYRDFE--- 135 (283)
T ss_pred HHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCC----CcccEEEeccccccc---
Confidence 4455678999999999999999999999987 79999999999999999999998876 456788889988874
Q ss_pred CCeeEEEEcCCCccccCCccc-hHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 383 ACVDGIVTDLPFGKRVGSKSN-NFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 383 ~~~D~IVtNPPYG~r~~~~~~-~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
+.||.||+ ++--+. ..+-|..|++.+.++|+|| |++++
T Consensus 136 e~fDrIvS-------vgmfEhvg~~~~~~ff~~~~~~L~~~-G~~ll 174 (283)
T COG2230 136 EPFDRIVS-------VGMFEHVGKENYDDFFKKVYALLKPG-GRMLL 174 (283)
T ss_pred cccceeee-------hhhHHHhCcccHHHHHHHHHhhcCCC-ceEEE
Confidence 45999998 321111 1233888999999999999 98876
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.9e-10 Score=114.28 Aligned_cols=94 Identities=16% Similarity=0.156 Sum_probs=79.3
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
..+.+.++..++..+.+.++..|||+|||+|.+...++... ..++|+|+|+.+++.+++|+.. .++.+++
T Consensus 24 fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~--------~~v~~i~ 93 (272)
T PRK00274 24 FLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAE--------DNLTIIE 93 (272)
T ss_pred cCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhcc--------CceEEEE
Confidence 34677889999998888889999999999999999998874 4899999999999999988742 3468999
Q ss_pred eccccccCCCCCeeEEEEcCCCcc
Q psy19 373 CNVRQLCFKPACVDGIVTDLPFGK 396 (494)
Q Consensus 373 ~Da~~l~~~~~~~D~IVtNPPYG~ 396 (494)
+|+.++++++-.++.||+||||..
T Consensus 94 ~D~~~~~~~~~~~~~vv~NlPY~i 117 (272)
T PRK00274 94 GDALKVDLSELQPLKVVANLPYNI 117 (272)
T ss_pred ChhhcCCHHHcCcceEEEeCCccc
Confidence 999988764322699999999975
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.1e-10 Score=119.64 Aligned_cols=174 Identities=17% Similarity=0.198 Sum_probs=117.3
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC----CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP----HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~----~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
++..+...|+.+..+++..+|+||+||||++++.++.... ...++|.|+++.....|++|+-.+|++. .+.+
T Consensus 170 TP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~----~~~i 245 (489)
T COG0286 170 TPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG----DANI 245 (489)
T ss_pred ChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc----cccc
Confidence 4556677777888878888999999999999999887642 2679999999999999999999988632 3456
Q ss_pred eeeccccccCC-----CCCeeEEEEcCCCc-cccCCcc----------------chHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 371 LVCNVRQLCFK-----PACVDGIVTDLPFG-KRVGSKS----------------NNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 371 ~~~Da~~l~~~-----~~~~D~IVtNPPYG-~r~~~~~----------------~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
..+|...-|.. .+.||.||+||||+ ....... .-..-+-.|+.++...|+|+ |++++
T Consensus 246 ~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~-g~aai 324 (489)
T COG0286 246 RHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPG-GRAAI 324 (489)
T ss_pred cccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCC-ceEEE
Confidence 67776655432 25799999999996 2221100 00112346899999999999 89998
Q ss_pred EecCHHHH--------HHHHHhccccceeeee---EEEccCCceEEEEEEeeCCCCC
Q psy19 429 LTSDRKHL--------IQALHITSALWKCRKQ---IKINMSGMKSFVFILNRTADLF 474 (494)
Q Consensus 429 lt~~~~~l--------~~~l~~~~~l~~~~~~---~~v~~Ggl~~~i~v~~~~~~~~ 474 (494)
+.++..++ ++.+-. ..++...-. -.+.+-|..+.|.++.+....-
T Consensus 325 vl~~gvlfr~~~e~~IR~~l~~-~~~~~~ii~lp~~lF~~t~i~~~Il~l~k~k~~~ 380 (489)
T COG0286 325 VLPDGVLFRGGAEKDIRKDLLE-DNLLEAIIGLPTGLFYNTGIPTNILFLTKNKPAE 380 (489)
T ss_pred EecCCcCcCCCchHHHHHHHHh-ccceEEeeeCChhhcccCCCCeEEEEeecCCCCC
Confidence 87754222 222221 100111000 1234558888888888766555
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.3e-10 Score=110.96 Aligned_cols=91 Identities=14% Similarity=0.191 Sum_probs=80.0
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
+.++++..++..++..++..|||+|||+|++.++++.. +..++|+|+|+.+++.+++++.. ..++.++++|
T Consensus 13 ~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~-------~~~v~ii~~D 83 (258)
T PRK14896 13 IDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA-------AGNVEIIEGD 83 (258)
T ss_pred CCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc-------CCCEEEEEec
Confidence 68899999999998888999999999999999999987 56899999999999999998863 1357899999
Q ss_pred cccccCCCCCeeEEEEcCCCcc
Q psy19 375 VRQLCFKPACVDGIVTDLPFGK 396 (494)
Q Consensus 375 a~~l~~~~~~~D~IVtNPPYG~ 396 (494)
+.+++++ .+|.||+||||..
T Consensus 84 ~~~~~~~--~~d~Vv~NlPy~i 103 (258)
T PRK14896 84 ALKVDLP--EFNKVVSNLPYQI 103 (258)
T ss_pred cccCCch--hceEEEEcCCccc
Confidence 9988764 5899999999975
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-09 Score=110.71 Aligned_cols=103 Identities=14% Similarity=0.107 Sum_probs=81.6
Q ss_pred CCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEEc
Q psy19 312 GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTD 391 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtN 391 (494)
+.+|||+|||+|..++.+|.. +..|+|+|+++.+++.+++|+...++ .+.+...|+...++ +++||+|+++
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l------~v~~~~~D~~~~~~-~~~fD~I~~~ 191 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENL------NIRTGLYDINSASI-QEEYDFILST 191 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCC------ceEEEEechhcccc-cCCccEEEEc
Confidence 458999999999999999886 68999999999999999999987654 35677788876655 4789999998
Q ss_pred CCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 392 LPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 392 PPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
..+.. +. .+....+++++.++|+|| |.++++.
T Consensus 192 ~vl~~-l~-----~~~~~~~l~~~~~~Lkpg-G~~l~v~ 223 (287)
T PRK12335 192 VVLMF-LN-----RERIPAIIKNMQEHTNPG-GYNLIVC 223 (287)
T ss_pred chhhh-CC-----HHHHHHHHHHHHHhcCCC-cEEEEEE
Confidence 65431 11 123557788999999999 9877654
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.3e-10 Score=105.08 Aligned_cols=78 Identities=17% Similarity=0.245 Sum_probs=58.6
Q ss_pred CEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc--CCCCC-eeEEE
Q psy19 313 DVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC--FKPAC-VDGIV 389 (494)
Q Consensus 313 ~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~--~~~~~-~D~IV 389 (494)
.+|+|.|||.|+-.|..|+.+ .+|+++|+|+..++.|+.|++.+|+ .+++.++++|+.++. +.... +|+|.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYGv----~~~I~~i~gD~~~~~~~~~~~~~~D~vF 74 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYGV----ADNIDFICGDFFELLKRLKSNKIFDVVF 74 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-----GGGEEEEES-HHHHGGGB------SEEE
T ss_pred CEEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEeCCHHHHHhhccccccccEEE
Confidence 379999999999999999984 5899999999999999999999875 678899999998873 22222 79999
Q ss_pred EcCCCcc
Q psy19 390 TDLPFGK 396 (494)
Q Consensus 390 tNPPYG~ 396 (494)
++||||.
T Consensus 75 lSPPWGG 81 (163)
T PF09445_consen 75 LSPPWGG 81 (163)
T ss_dssp E---BSS
T ss_pred ECCCCCC
Confidence 9999984
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.3e-10 Score=107.74 Aligned_cols=107 Identities=23% Similarity=0.259 Sum_probs=86.3
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt 390 (494)
+|.+|||.|||.|.++..+|.+ |+.|+|+|+++++|+.|+..+...|++ +++.+..+.++....++||+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~------i~y~~~~~edl~~~~~~FDvV~c 130 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVN------IDYRQATVEDLASAGGQFDVVTC 130 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhcccc------ccchhhhHHHHHhcCCCccEEEE
Confidence 7889999999999999999998 799999999999999999999987762 45677777777544479999999
Q ss_pred cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHH
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRK 434 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~ 434 (494)
. +-+..-.+ -..|++.+.+.+||| |.+++-|.+..
T Consensus 131 m----EVlEHv~d----p~~~~~~c~~lvkP~-G~lf~STinrt 165 (243)
T COG2227 131 M----EVLEHVPD----PESFLRACAKLVKPG-GILFLSTINRT 165 (243)
T ss_pred h----hHHHccCC----HHHHHHHHHHHcCCC-cEEEEeccccC
Confidence 4 12222222 235778999999999 99999988764
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.9e-09 Score=102.16 Aligned_cols=119 Identities=15% Similarity=0.093 Sum_probs=79.8
Q ss_pred HhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-----
Q psy19 306 LASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC----- 379 (494)
Q Consensus 306 la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~----- 379 (494)
...+.++.+|||+|||+|.+...++..+ +..+++|+|+++.+ .. ..+.++++|+.+.+
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~~--------~~i~~~~~d~~~~~~~~~l 90 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------PI--------ENVDFIRGDFTDEEVLNKI 90 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------cC--------CCceEEEeeCCChhHHHHH
Confidence 3456789999999999999988887765 44689999999854 11 12467788876532
Q ss_pred ---CCCCCeeEEEEcC--CC-ccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHH
Q psy19 380 ---FKPACVDGIVTDL--PF-GKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALH 441 (494)
Q Consensus 380 ---~~~~~~D~IVtNP--PY-G~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~ 441 (494)
++.++||+|++|+ || |...-...........++..+.++|+|| |++++.......+.+.+.
T Consensus 91 ~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lvi~~~~~~~~~~~l~ 157 (188)
T TIGR00438 91 RERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPK-GNFVVKVFQGEEIDEYLN 157 (188)
T ss_pred HHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCC-CEEEEEEccCccHHHHHH
Confidence 3346799999995 33 2221111111233567888999999999 999986554333444443
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.3e-09 Score=103.84 Aligned_cols=121 Identities=18% Similarity=0.298 Sum_probs=92.0
Q ss_pred chHHHHHHHHHHhCC---CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 295 LKPTIAYNMVRLASP---IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 295 L~e~lAa~ll~la~~---~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
+...++..++..... ..+.+|||+|||+|.++..++...+...++|+|+++.++..++.++. .++.++
T Consensus 15 ~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~---------~~~~~~ 85 (240)
T TIGR02072 15 IQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS---------ENVQFI 85 (240)
T ss_pred HHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC---------CCCeEE
Confidence 444555556555432 34468999999999999999988877889999999999999987654 135788
Q ss_pred eeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 372 VCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 372 ~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
.+|+...++++++||+|+++-.... . .+ ...++.++.++|+|| |.+++.++..
T Consensus 86 ~~d~~~~~~~~~~fD~vi~~~~l~~-~---~~----~~~~l~~~~~~L~~~-G~l~~~~~~~ 138 (240)
T TIGR02072 86 CGDAEKLPLEDSSFDLIVSNLALQW-C---DD----LSQALSELARVLKPG-GLLAFSTFGP 138 (240)
T ss_pred ecchhhCCCCCCceeEEEEhhhhhh-c---cC----HHHHHHHHHHHcCCC-cEEEEEeCCc
Confidence 8999988877789999999865331 1 12 345777899999999 9988876543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-09 Score=111.19 Aligned_cols=95 Identities=16% Similarity=0.197 Sum_probs=82.2
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
..+.++..++..+...+++.|||+|||+|.+...++.. +..++|+|+|+.+++.+++|+...+. ..+++++++|
T Consensus 20 ~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~----~~~v~ii~~D 93 (294)
T PTZ00338 20 KNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPL----ASKLEVIEGD 93 (294)
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCC----CCcEEEEECC
Confidence 57899999999999989999999999999999888876 56899999999999999999986542 3467899999
Q ss_pred cccccCCCCCeeEEEEcCCCccc
Q psy19 375 VRQLCFKPACVDGIVTDLPFGKR 397 (494)
Q Consensus 375 a~~l~~~~~~~D~IVtNPPYG~r 397 (494)
+...++ ..+|.||+||||...
T Consensus 94 al~~~~--~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 94 ALKTEF--PYFDVCVANVPYQIS 114 (294)
T ss_pred Hhhhcc--cccCEEEecCCcccC
Confidence 988765 368999999999754
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.9e-09 Score=104.35 Aligned_cols=117 Identities=15% Similarity=0.103 Sum_probs=80.1
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc--------
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-------- 379 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-------- 379 (494)
.+++.+|||+|||+|.+...++... +...|+|+|+++. .. . ..+.++++|+.+.+
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~----~-~~v~~i~~D~~~~~~~~~i~~~ 112 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DP----I-VGVDFLQGDFRDELVLKALLER 112 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cC----C-CCcEEEecCCCChHHHHHHHHH
Confidence 4678899999999999998888775 3468999999981 11 1 12578999998853
Q ss_pred CCCCCeeEEEEcC-CCccccC--CccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHh
Q psy19 380 FKPACVDGIVTDL-PFGKRVG--SKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHI 442 (494)
Q Consensus 380 ~~~~~~D~IVtNP-PYG~r~~--~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~ 442 (494)
+..++||+|++|+ |+-.... +......+...+|+.+.++|+|| |.+++.+.....+.+.+..
T Consensus 113 ~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpG-G~~vi~~~~~~~~~~~l~~ 177 (209)
T PRK11188 113 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPG-GSFVVKVFQGEGFDEYLRE 177 (209)
T ss_pred hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCC-CEEEEEEecCcCHHHHHHH
Confidence 4557899999997 5321111 10111123467899999999999 9999855543334444443
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-08 Score=101.31 Aligned_cols=128 Identities=15% Similarity=0.140 Sum_probs=92.0
Q ss_pred cccchHHHHHHHHH-HhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 292 ITTLKPTIAYNMVR-LASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 292 ~a~L~e~lAa~ll~-la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
|..+.-....+|+. +....++.+|||+|||+|+++..++..+|+..++++|+|+.+++.|+++....+ ...++++
T Consensus 46 P~~l~~~y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~----~~~rv~v 121 (262)
T PRK04457 46 PSELELAYTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE----NGERFEV 121 (262)
T ss_pred cccccCHHHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC----CCCceEE
Confidence 44454344555533 333345678999999999999999888899999999999999999999976432 1356789
Q ss_pred eeeccccc-cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 371 LVCNVRQL-CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 371 ~~~Da~~l-~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
+.+|+.+. .-..++||+|++|. |... +.... .....|++.+.+.|+|| |.+++
T Consensus 122 ~~~Da~~~l~~~~~~yD~I~~D~-~~~~-~~~~~--l~t~efl~~~~~~L~pg-Gvlvi 175 (262)
T PRK04457 122 IEADGAEYIAVHRHSTDVILVDG-FDGE-GIIDA--LCTQPFFDDCRNALSSD-GIFVV 175 (262)
T ss_pred EECCHHHHHHhCCCCCCEEEEeC-CCCC-CCccc--cCcHHHHHHHHHhcCCC-cEEEE
Confidence 99998765 22235899999995 3211 11111 11357888999999999 99887
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.8e-09 Score=104.55 Aligned_cols=103 Identities=13% Similarity=0.084 Sum_probs=82.7
Q ss_pred EEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEEcCC
Q psy19 314 VFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLP 393 (494)
Q Consensus 314 ~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPP 393 (494)
+|||+|||+|.+++.++..++++.++|+|+++.+++.|+.++...|+ ..++.+...|+...+++ ++||+|++.--
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl----~~~i~~~~~d~~~~~~~-~~fD~I~~~~~ 76 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL----QGRIRIFYRDSAKDPFP-DTYDLVFGFEV 76 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC----CcceEEEecccccCCCC-CCCCEeehHHH
Confidence 69999999999999999887778999999999999999999987654 45678999998766554 58999998432
Q ss_pred CccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 394 FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 394 YG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+.. + .+ ...+++++.++|+|| |++++..
T Consensus 77 l~~-~---~~----~~~~l~~~~~~Lkpg-G~l~i~~ 104 (224)
T smart00828 77 IHH-I---KD----KMDLFSNISRHLKDG-GHLVLAD 104 (224)
T ss_pred HHh-C---CC----HHHHHHHHHHHcCCC-CEEEEEE
Confidence 211 1 12 356777899999999 9988754
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-08 Score=96.16 Aligned_cols=113 Identities=20% Similarity=0.366 Sum_probs=86.6
Q ss_pred HHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCC-CeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC
Q psy19 302 NMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPH-TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380 (494)
Q Consensus 302 ~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~-~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~ 380 (494)
.++.+....++.+|||+|||+|.++..++..++. ..++|+|+++.++..++.+.. . ...+.+..+|+.++++
T Consensus 30 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~------~~~i~~~~~d~~~~~~ 102 (223)
T TIGR01934 30 RAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L------PLNIEFIQADAEALPF 102 (223)
T ss_pred HHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c------CCCceEEecchhcCCC
Confidence 3445555557889999999999999988887764 689999999999999999875 1 2346788999998876
Q ss_pred CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
..+.||+|+++--+ . ...+ ...+++.+.++|+|| |+++++.
T Consensus 103 ~~~~~D~i~~~~~~--~--~~~~----~~~~l~~~~~~L~~g-G~l~~~~ 143 (223)
T TIGR01934 103 EDNSFDAVTIAFGL--R--NVTD----IQKALREMYRVLKPG-GRLVILE 143 (223)
T ss_pred CCCcEEEEEEeeee--C--Cccc----HHHHHHHHHHHcCCC-cEEEEEE
Confidence 66789999985322 1 1112 346777899999999 9988754
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.2e-09 Score=107.54 Aligned_cols=119 Identities=16% Similarity=0.012 Sum_probs=91.3
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
....|.+.+.|+..+.++++.+|||+|||+|.+++.++...+ ...|+|+|+++.+++.|++|+..+|. .++.++
T Consensus 62 ~~~~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-----~nV~~i 136 (322)
T PRK13943 62 TSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-----ENVIFV 136 (322)
T ss_pred cCCcHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CcEEEE
Confidence 345677777888888888999999999999999998887643 24799999999999999999997764 346788
Q ss_pred eeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 372 VCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 372 ~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
++|+.......+.||+|+++. +. ..+ ...+.+.|+|| |++++...
T Consensus 137 ~gD~~~~~~~~~~fD~Ii~~~--g~--------~~i----p~~~~~~Lkpg-G~Lvv~~~ 181 (322)
T PRK13943 137 CGDGYYGVPEFAPYDVIFVTV--GV--------DEV----PETWFTQLKEG-GRVIVPIN 181 (322)
T ss_pred eCChhhcccccCCccEEEECC--ch--------HHh----HHHHHHhcCCC-CEEEEEeC
Confidence 999877644446799999962 11 111 12466789999 99887554
|
|
| >PF02926 THUMP: THUMP domain; InterPro: IPR004114 The THUMP domain is shared by 4-thiouridine, pseudouridine synthases and RNA methylases[] and is probably an RNA-binding domain that adopts an alpha/beta fold similar to that found in the C-terminal domain of translation initiation factor 3 and ribosomal protein S8 | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.9e-10 Score=100.47 Aligned_cols=58 Identities=36% Similarity=0.599 Sum_probs=54.6
Q ss_pred EEEEEEEEecCc-ccChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEEEecCcceeccc
Q psy19 219 KFRVTCNRVGKH-TVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLP 276 (494)
Q Consensus 219 tFrV~~~~~g~~-~~~s~~~~~~v~~aI~d~~~~~vdl~~pdi~i~v~l~~~~~~l~l~ 276 (494)
||+|.+++.+++ .|+|+++++.+|++|.+.++++||+++||+.|++.+.++.++++++
T Consensus 85 tF~V~~~r~~~~~~~~s~ei~~~vg~~i~~~~~~~Vdl~~Pd~~i~Vev~~~~~~i~i~ 143 (144)
T PF02926_consen 85 TFAVRCRRRGKHFPFTSMEIEREVGDAIKEKGGPKVDLKNPDVVIHVEVRKDKCYISID 143 (144)
T ss_dssp EEEEEEEEESSSSSSCHHHHHHHHHHHHHHHHHTEE-SSSSSEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEcCCccccCHHHHHHHHHHHHHHHhCCCccCcCcCEEEEEEEECCEEEEEEe
Confidence 899999999977 8999999999999999999999999999999999999999999875
|
The THUMP domain probably functions by delivering a variety of RNA modification enzymes to their targets []. This domain is found in the thiamine biosynthesis proteins (ThiI) (see IPR003720 from INTERPRO).; PDB: 3TLJ_A 3TM5_B 3TM4_A 2DIR_A 3TMA_A 1VBK_B 3K0B_A 2C5S_A 3LDU_A 3V8V_B .... |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.4e-09 Score=101.74 Aligned_cols=140 Identities=15% Similarity=0.163 Sum_probs=99.6
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
+-+.=+..|+.+++..||.+||+.|.|||.+...+|.. .|..+|+.+|++++.++.|++|++.+|+ .+.+.+.+.
T Consensus 24 iYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl----~~~v~~~~~ 99 (247)
T PF08704_consen 24 IYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL----DDNVTVHHR 99 (247)
T ss_dssp --HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC----CTTEEEEES
T ss_pred eeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC----CCCceeEec
Confidence 34445667888899999999999999999999988854 6778999999999999999999998875 457889999
Q ss_pred ccccccCC---CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcc-cCCCcEEEEEecCHHHHHHH---HHhcccc
Q psy19 374 NVRQLCFK---PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIV-RPQIGRAILLTSDRKHLIQA---LHITSAL 446 (494)
Q Consensus 374 Da~~l~~~---~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvL-kpg~G~lvllt~~~~~l~~~---l~~~~~l 446 (494)
|+..-.+. +..+|.|+.|.|--. ..+..+.+.| ++| |++++++|..+.+.+. +++.+
T Consensus 100 Dv~~~g~~~~~~~~~DavfLDlp~Pw-------------~~i~~~~~~L~~~g-G~i~~fsP~ieQv~~~~~~L~~~g-- 163 (247)
T PF08704_consen 100 DVCEEGFDEELESDFDAVFLDLPDPW-------------EAIPHAKRALKKPG-GRICCFSPCIEQVQKTVEALREHG-- 163 (247)
T ss_dssp -GGCG--STT-TTSEEEEEEESSSGG-------------GGHHHHHHHE-EEE-EEEEEEESSHHHHHHHHHHHHHTT--
T ss_pred ceecccccccccCcccEEEEeCCCHH-------------HHHHHHHHHHhcCC-ceEEEECCCHHHHHHHHHHHHHCC--
Confidence 98754332 257999999998321 2233577789 898 9999999987655544 44444
Q ss_pred ceeeeeEE
Q psy19 447 WKCRKQIK 454 (494)
Q Consensus 447 ~~~~~~~~ 454 (494)
|.....+.
T Consensus 164 f~~i~~~E 171 (247)
T PF08704_consen 164 FTDIETVE 171 (247)
T ss_dssp EEEEEEEE
T ss_pred CeeeEEEE
Confidence 34444433
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.5e-09 Score=102.26 Aligned_cols=90 Identities=17% Similarity=0.260 Sum_probs=71.9
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt 390 (494)
++.+|||+|||||.++..++... +..++|+|+++.|++.|+... ..+++|+..+|+++++||+|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~-------------~~~~~d~~~lp~~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD-------------DKVVGSFEALPFRDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc-------------ceEEechhhCCCCCCCEEEEEe
Confidence 36799999999999999888765 469999999999999998631 2467899999998899999999
Q ss_pred cCCCccccCCccchHHHHHHHHHHHhhcccCC
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQ 422 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg 422 (494)
+. +.+. ..+ ...+++++.|+|||.
T Consensus 117 ~~--~l~~--~~d----~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 117 SF--ALHA--SDN----IEKVIAEFTRVSRKQ 140 (226)
T ss_pred cC--hhhc--cCC----HHHHHHHHHHHhcCc
Confidence 64 3332 123 346777999999986
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.1e-09 Score=110.93 Aligned_cols=109 Identities=25% Similarity=0.270 Sum_probs=85.0
Q ss_pred HHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCC
Q psy19 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKP 382 (494)
Q Consensus 303 ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~ 382 (494)
++..++.+++.+|||+|||+|.+++.++... ++.|+|+|+++.+++.|++++. +. .+++...|+..+ +
T Consensus 159 l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~--~l------~v~~~~~D~~~l---~ 226 (383)
T PRK11705 159 ICRKLQLKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA--GL------PVEIRLQDYRDL---N 226 (383)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc--cC------eEEEEECchhhc---C
Confidence 4455667899999999999999999888754 5799999999999999999885 21 256778888765 3
Q ss_pred CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 383 ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 383 ~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
++||.|++...+. .++. .-+..+++++.++|+|| |.+++.+
T Consensus 227 ~~fD~Ivs~~~~e-hvg~-----~~~~~~l~~i~r~LkpG-G~lvl~~ 267 (383)
T PRK11705 227 GQFDRIVSVGMFE-HVGP-----KNYRTYFEVVRRCLKPD-GLFLLHT 267 (383)
T ss_pred CCCCEEEEeCchh-hCCh-----HHHHHHHHHHHHHcCCC-cEEEEEE
Confidence 6899999976543 1221 22567788999999999 9988754
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.5e-09 Score=104.21 Aligned_cols=117 Identities=12% Similarity=-0.009 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 296 KPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 296 ~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
.+..++.|..++...+..+|||+|||+|..++.+|.. .++.+++++|+++++++.|++|++.+|+ .++++++.+|
T Consensus 53 ~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl----~~~i~~~~gd 128 (234)
T PLN02781 53 PVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV----DHKINFIQSD 128 (234)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEcc
Confidence 3445666666777767789999999999876666554 3357999999999999999999998876 4568999999
Q ss_pred cccc-c-C----CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 375 VRQL-C-F----KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 375 a~~l-~-~----~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
+.+. + + +.++||+|+.|.+ ...|..++..+.++|+|| |.+++
T Consensus 129 a~~~L~~l~~~~~~~~fD~VfiDa~-----------k~~y~~~~~~~~~ll~~G-G~ii~ 176 (234)
T PLN02781 129 ALSALDQLLNNDPKPEFDFAFVDAD-----------KPNYVHFHEQLLKLVKVG-GIIAF 176 (234)
T ss_pred HHHHHHHHHhCCCCCCCCEEEECCC-----------HHHHHHHHHHHHHhcCCC-eEEEE
Confidence 9775 1 1 1358999999864 133667777899999999 97764
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-08 Score=102.50 Aligned_cols=113 Identities=15% Similarity=0.127 Sum_probs=84.1
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc-cCCCCCeeEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-CFKPACVDGIV 389 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-~~~~~~~D~IV 389 (494)
...+||++|||+|+++.+++...+..+|.++|+|+.+++.|++++...+....-..+++++.+|+... ....++||+||
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 45689999999999999988754456899999999999999999865331111135688999999875 22346899999
Q ss_pred EcC--CCccccCCccchHHHH-HHHHHHHhhcccCCCcEEEEEec
Q psy19 390 TDL--PFGKRVGSKSNNFLLY-RLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 390 tNP--PYG~r~~~~~~~~~ly-~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+|. |++.. ..+| ..|++.+.+.|+|| |.+++-+.
T Consensus 156 ~D~~dp~~~~-------~~l~t~ef~~~~~~~L~~g-Gvlv~~~~ 192 (283)
T PRK00811 156 VDSTDPVGPA-------EGLFTKEFYENCKRALKED-GIFVAQSG 192 (283)
T ss_pred ECCCCCCCch-------hhhhHHHHHHHHHHhcCCC-cEEEEeCC
Confidence 994 55321 1223 46777899999999 98887543
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-09 Score=108.37 Aligned_cols=131 Identities=15% Similarity=0.071 Sum_probs=84.5
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcCh----HHHHHHhcCC-----CCeEEEEeCCHHHHHHHHHHHHh----ccC-
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGT----IPVECSLSYP-----HTFFVCGDINEKLVLKTQANVLH----NSG- 360 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGt----ilIEAA~~~~-----~~~v~G~Did~~al~~Ar~Nl~~----~g~- 360 (494)
|...+.-.++......++.+|+|.|||||- +++.++...+ +..|+|+|+|+.|++.|++++-. .++
T Consensus 83 l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~ 162 (264)
T smart00138 83 LEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLP 162 (264)
T ss_pred HHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCC
Confidence 333333333333333456799999999994 5555554332 47899999999999999986410 011
Q ss_pred -----------------CCCcccceeeeeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCC
Q psy19 361 -----------------NLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQI 423 (494)
Q Consensus 361 -----------------~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~ 423 (494)
...+...+.+.++|+.+.+++.+.||+|+|.-=+. .+. ...-..+++++.++|+||
T Consensus 163 ~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~-yf~-----~~~~~~~l~~l~~~L~pG- 235 (264)
T smart00138 163 KALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLI-YFD-----EPTQRKLLNRFAEALKPG- 235 (264)
T ss_pred HHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHH-hCC-----HHHHHHHHHHHHHHhCCC-
Confidence 00122467899999998876667999999931110 010 122346777899999999
Q ss_pred cEEEEEecC
Q psy19 424 GRAILLTSD 432 (494)
Q Consensus 424 G~lvllt~~ 432 (494)
|.+++-.++
T Consensus 236 G~L~lg~~E 244 (264)
T smart00138 236 GYLFLGHSE 244 (264)
T ss_pred eEEEEECcc
Confidence 987765444
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.1e-09 Score=105.33 Aligned_cols=109 Identities=16% Similarity=-0.019 Sum_probs=84.8
Q ss_pred CCCEEEEEcCCcC--hHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHh-ccCCCCcccceeeeeeccccccCCCCCeeE
Q psy19 311 PGDVFLDPMCGGG--TIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH-NSGNLNRELKVSPLVCNVRQLCFKPACVDG 387 (494)
Q Consensus 311 ~g~~VLDP~CGSG--tilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~-~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~ 387 (494)
++.+|+|+|||.| |-++.++..+|+..++|+|+|+++++.|++++.. .+ +..++.|..+|+.+.....+.||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g----L~~rV~F~~~Da~~~~~~l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD----LSKRMFFHTADVMDVTESLKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC----ccCCcEEEECchhhcccccCCcCE
Confidence 6789999999999 6666677778999999999999999999999964 44 456789999999886433468999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
|+++ = -+.-. ..-+.++++.+.+.|+|| |.+++=++
T Consensus 199 VF~~-A---Li~~d---k~~k~~vL~~l~~~LkPG-G~Lvlr~~ 234 (296)
T PLN03075 199 VFLA-A---LVGMD---KEEKVKVIEHLGKHMAPG-ALLMLRSA 234 (296)
T ss_pred EEEe-c---ccccc---cccHHHHHHHHHHhcCCC-cEEEEecc
Confidence 9996 1 11110 122667888999999999 98877654
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.97 E-value=7e-09 Score=84.95 Aligned_cols=102 Identities=21% Similarity=0.212 Sum_probs=79.1
Q ss_pred EEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC-CCCCeeEEEEcC
Q psy19 314 VFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF-KPACVDGIVTDL 392 (494)
Q Consensus 314 ~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~-~~~~~D~IVtNP 392 (494)
+++|+|||+|.++..++. .+...++++|+++.++..++++....+ ...+.+...|+.+... ....+|+|++|+
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALL-----ADNVEVLKGDAEELPPEADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhccc-----ccceEEEEcChhhhccccCCceEEEEEcc
Confidence 489999999999888877 456899999999999999986444222 2456788899888753 346899999999
Q ss_pred CCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 393 PFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 393 PYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
|+... ...+..+++.+.+.|+|+ |.+++.
T Consensus 75 ~~~~~-------~~~~~~~l~~~~~~l~~~-g~~~~~ 103 (107)
T cd02440 75 PLHHL-------VEDLARFLEEARRLLKPG-GVLVLT 103 (107)
T ss_pred ceeeh-------hhHHHHHHHHHHHHcCCC-CEEEEE
Confidence 97642 233567777899999999 987654
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-08 Score=97.36 Aligned_cols=99 Identities=20% Similarity=0.250 Sum_probs=73.1
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEE
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGI 388 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~I 388 (494)
..++.+|||+|||+|.++..++.. +..++|+|+++.++..|++++...+. ..++.+.++|+..++ ++||+|
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~----~~~i~~~~~d~~~~~---~~fD~i 123 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDV----AGNVEFEVNDLLSLC---GEFDIV 123 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEECChhhCC---CCcCEE
Confidence 456889999999999999998876 57899999999999999999986543 235788999988765 689999
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHHhhcccCC
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQ 422 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg 422 (494)
++.-.+- .. ...+ ...++.++.++++++
T Consensus 124 i~~~~l~-~~-~~~~----~~~~l~~i~~~~~~~ 151 (219)
T TIGR02021 124 VCMDVLI-HY-PASD----MAKALGHLASLTKER 151 (219)
T ss_pred EEhhHHH-hC-CHHH----HHHHHHHHHHHhCCC
Confidence 8732210 01 1111 234566777777754
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.8e-09 Score=99.92 Aligned_cols=121 Identities=25% Similarity=0.336 Sum_probs=91.7
Q ss_pred CEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc-c--CCCCCeeEEE
Q psy19 313 DVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-C--FKPACVDGIV 389 (494)
Q Consensus 313 ~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-~--~~~~~~D~IV 389 (494)
..+||+|||.|.++++.|...|+..++|+|+....+..|...+...++ .++.++++|+..+ . ++++++|.|.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-----~Nv~~~~~da~~~l~~~~~~~~v~~i~ 93 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-----KNVRFLRGDARELLRRLFPPGSVDRIY 93 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-----SSEEEEES-CTTHHHHHSTTTSEEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-----cceEEEEccHHHHHhhcccCCchheEE
Confidence 389999999999999999999999999999999999999999998764 4578999999874 2 4458999998
Q ss_pred EcCC--CccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHH
Q psy19 390 TDLP--FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALH 441 (494)
Q Consensus 390 tNPP--YG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~ 441 (494)
.|-| |-++-... .+-+...|+..+.++|+|| |.+.+.|.+..++...+.
T Consensus 94 i~FPDPWpK~rH~k--rRl~~~~fl~~~~~~L~~g-G~l~~~TD~~~y~~~~~~ 144 (195)
T PF02390_consen 94 INFPDPWPKKRHHK--RRLVNPEFLELLARVLKPG-GELYFATDVEEYAEWMLE 144 (195)
T ss_dssp EES-----SGGGGG--GSTTSHHHHHHHHHHEEEE-EEEEEEES-HHHHHHHHH
T ss_pred EeCCCCCcccchhh--hhcCCchHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHH
Confidence 8776 43322111 1223567888999999999 999999998876655544
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.5e-09 Score=108.83 Aligned_cols=104 Identities=17% Similarity=0.106 Sum_probs=81.5
Q ss_pred CCEEEEEcCCcChHHHHHHhcCCC-CeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC-CCCCeeEEE
Q psy19 312 GDVFLDPMCGGGTIPVECSLSYPH-TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF-KPACVDGIV 389 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~~~-~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~-~~~~~D~IV 389 (494)
+.+|||+|||||.++|+++...++ ..|+++|+|+.+++.+++|++.+++ ..+.+++.|+..+-. ....||+|.
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~-----~~~~v~~~Da~~~l~~~~~~fDvId 119 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV-----ENIEVPNEDAANVLRYRNRKFHVID 119 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CcEEEEchhHHHHHHHhCCCCCEEE
Confidence 358999999999999999987433 5899999999999999999998865 246789999987621 125799999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
.|| ||.- ..|+..+.+.++++ |.+.+.+.|.
T Consensus 120 lDP-fGs~-----------~~fld~al~~~~~~-glL~vTaTD~ 150 (374)
T TIGR00308 120 IDP-FGTP-----------APFVDSAIQASAER-GLLLVTATDT 150 (374)
T ss_pred eCC-CCCc-----------HHHHHHHHHhcccC-CEEEEEeccc
Confidence 999 6621 14566788888888 8877765443
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.8e-08 Score=99.27 Aligned_cols=119 Identities=14% Similarity=0.155 Sum_probs=85.3
Q ss_pred ccchHHHHHHHHH---HhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccce
Q psy19 293 TTLKPTIAYNMVR---LASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKV 368 (494)
Q Consensus 293 a~L~e~lAa~ll~---la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i 368 (494)
.|-+..|||+++. ...++++.+|||+|||+|++...+|... +...|+++|+++++++.....+... .++
T Consensus 111 ~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-------~NI 183 (293)
T PTZ00146 111 NPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-------PNI 183 (293)
T ss_pred CCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-------CCC
Confidence 4688999999864 3346899999999999999999988764 3458999999998765444433311 234
Q ss_pred eeeeeccccc---cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 369 SPLVCNVRQL---CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 369 ~~~~~Da~~l---~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
.++..|+... .....++|+|++|... . + -+..++.++.++|||+ |++++.
T Consensus 184 ~~I~~Da~~p~~y~~~~~~vDvV~~Dva~------p-d---q~~il~~na~r~LKpG-G~~vI~ 236 (293)
T PTZ00146 184 VPIIEDARYPQKYRMLVPMVDVIFADVAQ------P-D---QARIVALNAQYFLKNG-GHFIIS 236 (293)
T ss_pred EEEECCccChhhhhcccCCCCEEEEeCCC------c-c---hHHHHHHHHHHhccCC-CEEEEE
Confidence 6788888642 1123579999998741 1 1 1334555789999999 998883
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.6e-08 Score=102.46 Aligned_cols=102 Identities=22% Similarity=0.246 Sum_probs=84.2
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
.+|.+|+|+|||.|-|+|.+|.... ..|+++||||.+++..++|++.|++ ...+..+++|++......+.+|-||
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN~v----~~~v~~i~gD~rev~~~~~~aDrIi 261 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLNKV----EGRVEPILGDAREVAPELGVADRII 261 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhcCc----cceeeEEeccHHHhhhccccCCEEE
Confidence 4699999999999999999998743 3399999999999999999999976 4557899999999865447899999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+|.|... ..|+..+.+.+++| |.+.+.
T Consensus 262 m~~p~~a------------~~fl~~A~~~~k~~-g~iHyy 288 (341)
T COG2520 262 MGLPKSA------------HEFLPLALELLKDG-GIIHYY 288 (341)
T ss_pred eCCCCcc------------hhhHHHHHHHhhcC-cEEEEE
Confidence 9988531 24555788888988 876653
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.1e-08 Score=97.32 Aligned_cols=124 Identities=14% Similarity=0.122 Sum_probs=82.9
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCC----------c
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLN----------R 364 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~----------~ 364 (494)
-++.+...+-.+. ..++.+|||||||.|.-++.+|.+ |..|+|+|+++.|++.+.... ++... -
T Consensus 19 p~~~l~~~~~~l~-~~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~---~~~~~~~~~~~~~~~~ 92 (213)
T TIGR03840 19 VNPLLVKHWPALG-LPAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAEN---GLTPTVTQQGEFTRYR 92 (213)
T ss_pred CCHHHHHHHHhhC-CCCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHc---CCCcceeccccceeee
Confidence 4455555443332 246679999999999999999987 789999999999999864321 11100 1
Q ss_pred ccceeeeeeccccccCC-CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 365 ELKVSPLVCNVRQLCFK-PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 365 ~~~i~~~~~Da~~l~~~-~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
...+++.++|+++++.. .+.||.|+-.--+ +.. .......+++.+.++|+|| |++++++-
T Consensus 93 ~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~---~~l---~~~~R~~~~~~l~~lLkpg-G~~ll~~~ 153 (213)
T TIGR03840 93 AGNIEIFCGDFFALTAADLGPVDAVYDRAAL---IAL---PEEMRQRYAAHLLALLPPG-ARQLLITL 153 (213)
T ss_pred cCceEEEEccCCCCCcccCCCcCEEEechhh---ccC---CHHHHHHHHHHHHHHcCCC-CeEEEEEE
Confidence 23578999999988632 2468877652111 111 1233456777999999999 98766644
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.8e-08 Score=103.20 Aligned_cols=124 Identities=15% Similarity=0.071 Sum_probs=85.9
Q ss_pred ccccchHHHHHH-HHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCccccee
Q psy19 291 NITTLKPTIAYN-MVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVS 369 (494)
Q Consensus 291 ~~a~L~e~lAa~-ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~ 369 (494)
.++.++..+... ++......+|.+|||+|||+|.+.+.++..++ ..++|+|.++.++..++...+..+. ...+.
T Consensus 100 ~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~~----~~~v~ 174 (314)
T TIGR00452 100 IDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLDN----DKRAI 174 (314)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhcc----CCCeE
Confidence 355566665533 34444566788999999999999988887743 4799999999998876543332221 23456
Q ss_pred eeeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 370 PLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 370 ~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+...|+.+++.. .+||+|+++=-.-. ..+ ...+|+++.++|+|| |++++-
T Consensus 175 ~~~~~ie~lp~~-~~FD~V~s~gvL~H----~~d----p~~~L~el~r~LkpG-G~Lvle 224 (314)
T TIGR00452 175 LEPLGIEQLHEL-YAFDTVFSMGVLYH----RKS----PLEHLKQLKHQLVIK-GELVLE 224 (314)
T ss_pred EEECCHHHCCCC-CCcCEEEEcchhhc----cCC----HHHHHHHHHHhcCCC-CEEEEE
Confidence 788888888754 58999999532111 112 235777899999999 999874
|
Known examples to date are restricted to the proteobacteria. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-08 Score=100.76 Aligned_cols=93 Identities=14% Similarity=0.150 Sum_probs=79.0
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
.-+.+.+++.++..++..++..|||+|||+|.+...++... ..++|+|+|+.+++.++.++.. ..++.+++
T Consensus 11 fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~-------~~~v~v~~ 81 (253)
T TIGR00755 11 FLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL-------YERLEVIE 81 (253)
T ss_pred cCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc-------CCcEEEEE
Confidence 34788999999999998889999999999999999998875 4699999999999999988752 13468899
Q ss_pred eccccccCCCCCee---EEEEcCCCcc
Q psy19 373 CNVRQLCFKPACVD---GIVTDLPFGK 396 (494)
Q Consensus 373 ~Da~~l~~~~~~~D---~IVtNPPYG~ 396 (494)
+|+..+++. .+| .||+||||..
T Consensus 82 ~D~~~~~~~--~~d~~~~vvsNlPy~i 106 (253)
T TIGR00755 82 GDALKVDLP--DFPKQLKVVSNLPYNI 106 (253)
T ss_pred CchhcCChh--HcCCcceEEEcCChhh
Confidence 999988754 456 9999999974
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.4e-08 Score=96.29 Aligned_cols=96 Identities=15% Similarity=-0.003 Sum_probs=72.4
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeE
Q psy19 308 SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG 387 (494)
Q Consensus 308 ~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~ 387 (494)
...++.+|||+|||+|.++..++...++..++|+|+++.|++.|+.++. .+.+.++|+.+ ++++++||+
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~----------~~~~~~~d~~~-~~~~~sfD~ 108 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP----------NINIIQGSLFD-PFKDNFFDL 108 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC----------CCcEEEeeccC-CCCCCCEEE
Confidence 3456778999999999999988877677899999999999999998753 13577889888 777789999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhccc
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVR 420 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLk 420 (494)
|+++--... + . .+....+++++.++++
T Consensus 109 V~~~~vL~h-l-~----p~~~~~~l~el~r~~~ 135 (204)
T TIGR03587 109 VLTKGVLIH-I-N----PDNLPTAYRELYRCSN 135 (204)
T ss_pred EEECChhhh-C-C----HHHHHHHHHHHHhhcC
Confidence 999643211 1 1 1224456667888763
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.4e-08 Score=96.66 Aligned_cols=121 Identities=17% Similarity=0.149 Sum_probs=88.4
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
.....|.+-+.|+.++.+++|++|||+|||||.+..-+|.. .+...|+++|+++..++.|++|+...+. .++.+
T Consensus 53 ~~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-----~nv~~ 127 (209)
T PF01135_consen 53 QTISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-----DNVEV 127 (209)
T ss_dssp EEE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-----HSEEE
T ss_pred eechHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-----CceeE
Confidence 44467888999999999999999999999999998777765 3445799999999999999999998765 35789
Q ss_pred eeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 371 ~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
.++|....-...+.||.|+++.-.- . +.. .+.+.|++| |++++....
T Consensus 128 ~~gdg~~g~~~~apfD~I~v~~a~~-------~---ip~----~l~~qL~~g-GrLV~pi~~ 174 (209)
T PF01135_consen 128 VVGDGSEGWPEEAPFDRIIVTAAVP-------E---IPE----ALLEQLKPG-GRLVAPIGQ 174 (209)
T ss_dssp EES-GGGTTGGG-SEEEEEESSBBS-------S-----H----HHHHTEEEE-EEEEEEESS
T ss_pred EEcchhhccccCCCcCEEEEeeccc-------h---HHH----HHHHhcCCC-cEEEEEEcc
Confidence 9999876533346899999964221 1 122 366689999 999986654
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.9e-08 Score=102.16 Aligned_cols=107 Identities=18% Similarity=0.131 Sum_probs=78.9
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeE
Q psy19 308 SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG 387 (494)
Q Consensus 308 ~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~ 387 (494)
....|.+|||+|||+|.+++.++..++ ..|+|+|.++.++..++......+. ..++.+..+|+.++++ ++.||+
T Consensus 119 ~~l~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~~~----~~~i~~~~~d~e~lp~-~~~FD~ 192 (322)
T PRK15068 119 SPLKGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLLGN----DQRAHLLPLGIEQLPA-LKAFDT 192 (322)
T ss_pred CCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhcCC----CCCeEEEeCCHHHCCC-cCCcCE
Confidence 334678999999999999999988754 3699999999998766554443221 2357889999999987 578999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
|++.-= +....+ ...+++++.+.|+|| |++++-
T Consensus 193 V~s~~v----l~H~~d----p~~~L~~l~~~LkpG-G~lvl~ 225 (322)
T PRK15068 193 VFSMGV----LYHRRS----PLDHLKQLKDQLVPG-GELVLE 225 (322)
T ss_pred EEECCh----hhccCC----HHHHHHHHHHhcCCC-cEEEEE
Confidence 998411 111112 245777899999999 998763
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-08 Score=109.69 Aligned_cols=113 Identities=16% Similarity=0.125 Sum_probs=84.0
Q ss_pred HHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc--c
Q psy19 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ--L 378 (494)
Q Consensus 301 a~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~--l 378 (494)
..++.+....++.+|||+|||+|.++..++.. ...++|+|+++.+++.++... + ....+.++++|+.. +
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~---~----~~~~i~~~~~d~~~~~~ 97 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESIN---G----HYKNVKFMCADVTSPDL 97 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHh---c----cCCceEEEEeccccccc
Confidence 34455555556789999999999999998876 468999999999998765422 1 12356789999863 4
Q ss_pred cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 379 CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 379 ~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
++++++||+|+++.++..- .. .....+++++.++|+|| |.+++.
T Consensus 98 ~~~~~~fD~I~~~~~l~~l-~~-----~~~~~~l~~~~r~Lk~g-G~l~~~ 141 (475)
T PLN02336 98 NISDGSVDLIFSNWLLMYL-SD-----KEVENLAERMVKWLKVG-GYIFFR 141 (475)
T ss_pred CCCCCCEEEEehhhhHHhC-CH-----HHHHHHHHHHHHhcCCC-eEEEEE
Confidence 6666799999999876522 11 12356777899999999 988763
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.9e-08 Score=94.35 Aligned_cols=119 Identities=18% Similarity=0.119 Sum_probs=94.1
Q ss_pred ccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 291 NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 291 ~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
+.+-..|.+.+.|+.+..++++++||++|||||..+.-.|.. ..+|+.+|+++...+.|++|++..|+ .++.+
T Consensus 52 gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l--~~~V~siEr~~~L~~~A~~~L~~lg~-----~nV~v 124 (209)
T COG2518 52 GQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARL--VGRVVSIERIEELAEQARRNLETLGY-----ENVTV 124 (209)
T ss_pred CceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH--hCeEEEEEEcHHHHHHHHHHHHHcCC-----CceEE
Confidence 455577889999999999999999999999999988777777 45999999999999999999998875 23789
Q ss_pred eeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 371 ~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
.++|...--...+.||.|+..= ... .. -. .+.+-|++| |++++...
T Consensus 125 ~~gDG~~G~~~~aPyD~I~Vta------aa~-~v---P~----~Ll~QL~~g-Grlv~PvG 170 (209)
T COG2518 125 RHGDGSKGWPEEAPYDRIIVTA------AAP-EV---PE----ALLDQLKPG-GRLVIPVG 170 (209)
T ss_pred EECCcccCCCCCCCcCEEEEee------ccC-CC---CH----HHHHhcccC-CEEEEEEc
Confidence 9999876522336899998831 111 11 11 356689999 99999877
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.9e-08 Score=96.82 Aligned_cols=124 Identities=19% Similarity=0.218 Sum_probs=93.1
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
..++.++.+..+.......++..|||+|||+|.+++.++.. +..++|+|+++.++..|++|+...+. .+.+.
T Consensus 29 ~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~------~~~~~ 100 (233)
T PRK05134 29 LHRINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGL------KIDYR 100 (233)
T ss_pred HHHhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCC------ceEEE
Confidence 34566676777777666678889999999999999888775 57899999999999999999876542 34677
Q ss_pred eecccccc-CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 372 VCNVRQLC-FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 372 ~~Da~~l~-~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
..|+..++ ...+.||+|+++-.+.. . .+. ..+++.+.++|+|| |++++..+.
T Consensus 101 ~~~~~~~~~~~~~~fD~Ii~~~~l~~-~---~~~----~~~l~~~~~~L~~g-G~l~v~~~~ 153 (233)
T PRK05134 101 QTTAEELAAEHPGQFDVVTCMEMLEH-V---PDP----ASFVRACAKLVKPG-GLVFFSTLN 153 (233)
T ss_pred ecCHHHhhhhcCCCccEEEEhhHhhc-c---CCH----HHHHHHHHHHcCCC-cEEEEEecC
Confidence 78877664 23468999999654332 1 122 35667899999999 998876553
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.2e-08 Score=94.42 Aligned_cols=125 Identities=15% Similarity=0.123 Sum_probs=82.2
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCC----------
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNL---------- 362 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~---------- 362 (494)
...++.|+..+-.+ ...++.+|||||||.|.-++.+|.+ |..|+|+|+++.|++.+.. .+++..
T Consensus 20 ~~p~~~L~~~~~~~-~~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~ 93 (218)
T PRK13255 20 EEVNPLLQKYWPAL-ALPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEH 93 (218)
T ss_pred CCCCHHHHHHHHhh-CCCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHH---HcCCCccccccccccc
Confidence 34455555543322 2345679999999999999999987 7899999999999998742 122110
Q ss_pred CcccceeeeeeccccccCCC-CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 363 NRELKVSPLVCNVRQLCFKP-ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 363 ~~~~~i~~~~~Da~~l~~~~-~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
....++++.++|+++++... ..||.|+- +..-..-....-..+++.+.++|+|| |.+.+++
T Consensus 94 ~~~~~v~~~~~D~~~l~~~~~~~fd~v~D------~~~~~~l~~~~R~~~~~~l~~lL~pg-G~~~l~~ 155 (218)
T PRK13255 94 YQAGEITIYCGDFFALTAADLADVDAVYD------RAALIALPEEMRERYVQQLAALLPAG-CRGLLVT 155 (218)
T ss_pred cccCceEEEECcccCCCcccCCCeeEEEe------hHhHhhCCHHHHHHHHHHHHHHcCCC-CeEEEEE
Confidence 01346789999999885332 46888773 11000001233456777899999999 8755543
|
|
| >KOG2187|consensus | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.1e-08 Score=106.27 Aligned_cols=125 Identities=17% Similarity=0.180 Sum_probs=93.3
Q ss_pred ccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 291 NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 291 ~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
..++..|.|-..+-.+++...+..++|.|||||+|++..|.. -..|+|+++++.+++-|+.|+..||+ .+.+|
T Consensus 363 ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~Ngi-----sNa~F 435 (534)
T KOG2187|consen 363 TNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGI-----SNATF 435 (534)
T ss_pred cCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCc-----cceee
Confidence 456677777777778888888999999999999999988876 57899999999999999999999986 34678
Q ss_pred eeeccccc-c--CC--CCCee-EEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHH
Q psy19 371 LVCNVRQL-C--FK--PACVD-GIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRK 434 (494)
Q Consensus 371 ~~~Da~~l-~--~~--~~~~D-~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~ 434 (494)
+++-+.++ + +. -++-+ ++|.||| |.|.+. .+++.+.+.-.+ -++++++++..
T Consensus 436 i~gqaE~~~~sl~~~~~~~~~~v~iiDPp---R~Glh~-------~~ik~l~~~~~~--~rlvyvSCn~~ 493 (534)
T KOG2187|consen 436 IVGQAEDLFPSLLTPCCDSETLVAIIDPP---RKGLHM-------KVIKALRAYKNP--RRLVYVSCNPH 493 (534)
T ss_pred eecchhhccchhcccCCCCCceEEEECCC---cccccH-------HHHHHHHhccCc--cceEEEEcCHH
Confidence 88855544 1 11 12345 8999999 666541 334444444333 57888999875
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.4e-08 Score=99.34 Aligned_cols=118 Identities=13% Similarity=0.085 Sum_probs=95.6
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
+.+..++.|..++...+..+|||+|||+|..++.+|...+ +..++++|+++++++.|++|++.+|+ .++++++.+
T Consensus 102 v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl----~~~I~li~G 177 (278)
T PLN02476 102 VSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV----SHKVNVKHG 177 (278)
T ss_pred cCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEc
Confidence 4566677777777777788999999999999999887543 56899999999999999999998876 467899999
Q ss_pred ccccc-c-C----CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 374 NVRQL-C-F----KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 374 Da~~l-~-~----~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
|+.+. + + ..++||+|+.|.+- .-|..+++.+.++|+|| |.+++
T Consensus 178 dA~e~L~~l~~~~~~~~FD~VFIDa~K-----------~~Y~~y~e~~l~lL~~G-GvIV~ 226 (278)
T PLN02476 178 LAAESLKSMIQNGEGSSYDFAFVDADK-----------RMYQDYFELLLQLVRVG-GVIVM 226 (278)
T ss_pred CHHHHHHHHHhcccCCCCCEEEECCCH-----------HHHHHHHHHHHHhcCCC-cEEEE
Confidence 98774 2 2 13589999999761 23777888899999999 87764
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-07 Score=95.37 Aligned_cols=116 Identities=15% Similarity=0.060 Sum_probs=84.1
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc-cCCCCCeeEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-CFKPACVDGIV 389 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-~~~~~~~D~IV 389 (494)
...+||++|||+|+++.+++...+...+.++|+|+.+++.|++++...+.. -...++++..+|+... ....++||+||
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~-~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGS-YDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhccc-ccCCceEEEECchHHHHHhCCCCccEEE
Confidence 345999999999999988876544568999999999999999988643210 1124567888898764 22236899999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+|+|..... ... -....|++.+.+.|+|| |.+++.+++
T Consensus 151 ~D~~~~~~~--~~~--l~~~ef~~~~~~~L~pg-G~lv~~~~~ 188 (270)
T TIGR00417 151 VDSTDPVGP--AET--LFTKEFYELLKKALNED-GIFVAQSES 188 (270)
T ss_pred EeCCCCCCc--ccc--hhHHHHHHHHHHHhCCC-cEEEEcCCC
Confidence 999865321 111 11356777899999999 998886554
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.1e-08 Score=96.10 Aligned_cols=118 Identities=18% Similarity=0.192 Sum_probs=97.9
Q ss_pred CEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc--c-CCCCCeeEEE
Q psy19 313 DVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL--C-FKPACVDGIV 389 (494)
Q Consensus 313 ~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l--~-~~~~~~D~IV 389 (494)
..+||+|||.|.++++.|...|...++|+|+....+..|..-+...+++ ++.+++.|+..+ . +++++.|-|.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-----Nlri~~~DA~~~l~~~~~~~sl~~I~ 124 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-----NLRLLCGDAVEVLDYLIPDGSLDKIY 124 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-----cEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence 4899999999999999999999999999999999999999999988761 568999999877 2 3445999998
Q ss_pred EcCC--CccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHH
Q psy19 390 TDLP--FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQ 438 (494)
Q Consensus 390 tNPP--YG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~ 438 (494)
.|-| |.+.-.. .-+-++..|++.++++|+|| |.+.+-|.+..++..
T Consensus 125 i~FPDPWpKkRH~--KRRl~~~~fl~~~a~~Lk~g-G~l~~aTD~~~y~e~ 172 (227)
T COG0220 125 INFPDPWPKKRHH--KRRLTQPEFLKLYARKLKPG-GVLHFATDNEEYFEW 172 (227)
T ss_pred EECCCCCCCcccc--ccccCCHHHHHHHHHHccCC-CEEEEEecCHHHHHH
Confidence 8876 5433221 23446788999999999999 999999998877666
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.4e-08 Score=89.59 Aligned_cols=111 Identities=22% Similarity=0.253 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhC-CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecc
Q psy19 297 PTIAYNMVRLAS-PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNV 375 (494)
Q Consensus 297 e~lAa~ll~la~-~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da 375 (494)
..++..+..+.. ..++.+|||+|||+|.++..++.. +.+++|+|+++.+++. . . +.....+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~-----~-~---------~~~~~~~~ 69 (161)
T PF13489_consen 7 RAYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK-----R-N---------VVFDNFDA 69 (161)
T ss_dssp HCHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH-----T-T---------SEEEEEEC
T ss_pred HHHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh-----h-h---------hhhhhhhh
Confidence 344555555554 467889999999999999888776 5699999999999988 1 0 11222233
Q ss_pred ccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 376 RQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 376 ~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
...+.+++.||+|+++== +....+ ...++..+.++|+|| |.+++.++..
T Consensus 70 ~~~~~~~~~fD~i~~~~~----l~~~~d----~~~~l~~l~~~Lkpg-G~l~~~~~~~ 118 (161)
T PF13489_consen 70 QDPPFPDGSFDLIICNDV----LEHLPD----PEEFLKELSRLLKPG-GYLVISDPNR 118 (161)
T ss_dssp HTHHCHSSSEEEEEEESS----GGGSSH----HHHHHHHHHHCEEEE-EEEEEEEEBT
T ss_pred hhhhccccchhhHhhHHH----Hhhccc----HHHHHHHHHHhcCCC-CEEEEEEcCC
Confidence 333344579999999621 111112 457788999999999 9999988864
|
... |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.9e-08 Score=96.18 Aligned_cols=113 Identities=12% Similarity=0.110 Sum_probs=87.5
Q ss_pred HHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc
Q psy19 300 AYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC 379 (494)
Q Consensus 300 Aa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~ 379 (494)
|.-++.......-..|+|+|||+|.-.--.+.+||++.|+|+|.|+.|++.|+..+- +++|..+|+.++.
T Consensus 19 a~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp----------~~~f~~aDl~~w~ 88 (257)
T COG4106 19 ARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP----------DATFEEADLRTWK 88 (257)
T ss_pred HHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC----------CCceecccHhhcC
Confidence 444555666667789999999999988888999999999999999999999976554 3478999999985
Q ss_pred CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 380 FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 380 ~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
.. ...|++++|--+. .+. +..+ +|..+...|.|| |.+++-.|+
T Consensus 89 p~-~~~dllfaNAvlq-Wlp---dH~~----ll~rL~~~L~Pg-g~LAVQmPd 131 (257)
T COG4106 89 PE-QPTDLLFANAVLQ-WLP---DHPE----LLPRLVSQLAPG-GVLAVQMPD 131 (257)
T ss_pred CC-Cccchhhhhhhhh-hcc---ccHH----HHHHHHHhhCCC-ceEEEECCC
Confidence 43 5799999986543 222 2233 344688889999 999887774
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-09 Score=92.52 Aligned_cols=99 Identities=16% Similarity=0.205 Sum_probs=59.4
Q ss_pred EEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEEcCCCc
Q psy19 316 LDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFG 395 (494)
Q Consensus 316 LDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPPYG 395 (494)
||+|||+|.++..++..++..+++|+|+++.|++.|++.+...+.. ....+.+...|...... .++||+|++.--+.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND--NFERLRFDVLDLFDYDP-PESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT-----EEEEE--SSS---CCC-----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc--ceeEEEeecCChhhccc-ccccceehhhhhHh
Confidence 7999999999999988888899999999999999999888865421 11122333333333222 25899999964332
Q ss_pred cccCCccchHHHHHHHHHHHhhcccCCCcEE
Q psy19 396 KRVGSKSNNFLLYRLFLIEIGKIVRPQIGRA 426 (494)
Q Consensus 396 ~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~l 426 (494)
.- .+ ...+++.+.++|+|| |.+
T Consensus 78 ~l----~~----~~~~l~~~~~~L~pg-G~l 99 (99)
T PF08242_consen 78 HL----ED----IEAVLRNIYRLLKPG-GIL 99 (99)
T ss_dssp ------S-----HHHHHHHHTTT-TSS--EE
T ss_pred hh----hh----HHHHHHHHHHHcCCC-CCC
Confidence 11 23 346677899999999 874
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.1e-08 Score=100.40 Aligned_cols=117 Identities=15% Similarity=0.085 Sum_probs=84.1
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCC-C-cccceeeeeeccccc-cCCCCCeeE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNL-N-RELKVSPLVCNVRQL-CFKPACVDG 387 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~-~-~~~~i~~~~~Da~~l-~~~~~~~D~ 387 (494)
...+||++|||+|..+.+++...+...|+++|+|+++++.|+..-.....+. . -..+++++.+|+... ....+.||+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 3458999999999998888765445789999999999999996311110000 1 135788999999875 333468999
Q ss_pred EEEcCCCccccCCccchHHHH-HHHHHHHhhcccCCCcEEEEEecC
Q psy19 388 IVTDLPFGKRVGSKSNNFLLY-RLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly-~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
||+|+|-.... ....+| ..|++.+.+.|+|| |.+++-+..
T Consensus 230 IIvDl~DP~~~----~~~~LyT~EFy~~~~~~LkPg-GV~V~Qs~s 270 (374)
T PRK01581 230 IIIDFPDPATE----LLSTLYTSELFARIATFLTED-GAFVCQSNS 270 (374)
T ss_pred EEEcCCCcccc----chhhhhHHHHHHHHHHhcCCC-cEEEEecCC
Confidence 99998753221 134556 56888999999999 988776543
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.1e-08 Score=91.60 Aligned_cols=120 Identities=17% Similarity=0.162 Sum_probs=81.6
Q ss_pred ccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 291 NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 291 ~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
+..+..+.+..+ ...-++.++||++||.|.-++.+|.. |..|+++|+++.+++.+++-+...++ .++.
T Consensus 14 ~~~~~hs~v~~a----~~~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l------~i~~ 81 (192)
T PF03848_consen 14 GLTPTHSEVLEA----VPLLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGL------DIRT 81 (192)
T ss_dssp TB----HHHHHH----CTTS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-------TEEE
T ss_pred CCCCCcHHHHHH----HhhcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCc------eeEE
Confidence 344444444433 34445679999999999999999998 78999999999999999888876654 2678
Q ss_pred eeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 371 ~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
...|+.+..++ ..||+|++---+. -+ .. +....+++.+...++|| |..++.+
T Consensus 82 ~~~Dl~~~~~~-~~yD~I~st~v~~-fL-~~----~~~~~i~~~m~~~~~pG-G~~li~~ 133 (192)
T PF03848_consen 82 RVADLNDFDFP-EEYDFIVSTVVFM-FL-QR----ELRPQIIENMKAATKPG-GYNLIVT 133 (192)
T ss_dssp EE-BGCCBS-T-TTEEEEEEESSGG-GS--G----GGHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred EEecchhcccc-CCcCEEEEEEEec-cC-CH----HHHHHHHHHHHhhcCCc-EEEEEEE
Confidence 88998887665 6899999742221 11 11 22456677899999999 9877754
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.1e-08 Score=104.89 Aligned_cols=119 Identities=16% Similarity=0.120 Sum_probs=92.3
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-CCCCCe
Q psy19 308 SPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-FKPACV 385 (494)
Q Consensus 308 ~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~~~~~~ 385 (494)
.+++|++|||.|||.|+=...+|... ....+++.|+++.-+...++|++..|+ .++.+.+.|...+. ...+.|
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-----~nv~v~~~D~~~~~~~~~~~f 184 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-----SNVALTHFDGRVFGAALPETF 184 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEeCchhhhhhhchhhc
Confidence 67899999999999998888777653 336899999999999999999999875 23678888988763 223579
Q ss_pred eEEEEcCCC-ccccC--Cc-----------cchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 386 DGIVTDLPF-GKRVG--SK-----------SNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 386 D~IVtNPPY-G~r~~--~~-----------~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
|.|+.|+|= |..+- .. ..+..+-.++|..+.+.|||| |+++..|+.
T Consensus 185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpG-G~LVYSTCT 244 (470)
T PRK11933 185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPG-GTLVYSTCT 244 (470)
T ss_pred CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCC-cEEEEECCC
Confidence 999999993 22110 00 123455678999999999999 999998884
|
|
| >KOG1270|consensus | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.6e-08 Score=97.87 Aligned_cols=110 Identities=18% Similarity=0.195 Sum_probs=80.9
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccC-CCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSG-NLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~-~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
-|..|||.|||+|-+.+.+|.. ++.|.|+|+.+.||+.|++.....-+ +.++.-++++...|+..+. +.||+||
T Consensus 89 ~g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVv 163 (282)
T KOG1270|consen 89 LGMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVV 163 (282)
T ss_pred CCceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceee
Confidence 4678999999999999999998 78999999999999999998543221 1112234667777776653 4699999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHH
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRK 434 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~ 434 (494)
|--= +.. -.-...|+..+.++|+|+ |++++-|-++.
T Consensus 164 csev----leH----V~dp~~~l~~l~~~lkP~-G~lfittinrt 199 (282)
T KOG1270|consen 164 CSEV----LEH----VKDPQEFLNCLSALLKPN-GRLFITTINRT 199 (282)
T ss_pred eHHH----HHH----HhCHHHHHHHHHHHhCCC-CceEeeehhhh
Confidence 9211 100 111456888999999999 99999887765
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.9e-08 Score=94.90 Aligned_cols=97 Identities=15% Similarity=0.099 Sum_probs=70.5
Q ss_pred CCCCEEEEEcCCcChHHHHHHhc----CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCe
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLS----YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACV 385 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~----~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~ 385 (494)
.++.+|||+|||+|.++..++.. .++..++|+|+++.|++.|+.+....+ +.+...|+..++..+++|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~--------~~~~~~~~~~l~~~~~~f 130 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG--------VTFRQAVSDELVAEGERF 130 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC--------CeEEEEecccccccCCCc
Confidence 56779999999999988776642 345689999999999999998865332 345566666665556799
Q ss_pred eEEEEcCCCccccCCccchHHHHHHHHHHHhhccc
Q psy19 386 DGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVR 420 (494)
Q Consensus 386 D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLk 420 (494)
|+|++|.-+.. +.. .-...+++++.++++
T Consensus 131 D~V~~~~~lhh-~~d-----~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 131 DVVTSNHFLHH-LDD-----AEVVRLLADSAALAR 159 (232)
T ss_pred cEEEECCeeec-CCh-----HHHHHHHHHHHHhcC
Confidence 99999864321 211 113467788999987
|
|
| >KOG2730|consensus | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.5e-09 Score=98.26 Aligned_cols=105 Identities=16% Similarity=0.228 Sum_probs=84.6
Q ss_pred cccccccccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCC
Q psy19 284 RRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLN 363 (494)
Q Consensus 284 ~Rgy~~~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~ 363 (494)
+-+|.-.+|.+..+.+|....... ....|+|.|||.|+-.|..|+. +..|+++||||.-+..|+.|++.+|+
T Consensus 70 ~e~wfsvTpe~ia~~iA~~v~~~~---~~~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNaeiYGI--- 141 (263)
T KOG2730|consen 70 REGWFSVTPEKIAEHIANRVVACM---NAEVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAEVYGV--- 141 (263)
T ss_pred ccceEEeccHHHHHHHHHHHHHhc---CcchhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccceeecC---
Confidence 334444567788888887776654 3458999999999999999988 56899999999999999999998876
Q ss_pred cccceeeeeeccccc----cCCCCCeeEEEEcCCCccc
Q psy19 364 RELKVSPLVCNVRQL----CFKPACVDGIVTDLPFGKR 397 (494)
Q Consensus 364 ~~~~i~~~~~Da~~l----~~~~~~~D~IVtNPPYG~r 397 (494)
.++|.|+++|+.++ .+....+|+|..-||||..
T Consensus 142 -~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sppwggp 178 (263)
T KOG2730|consen 142 -PDRITFICGDFLDLASKLKADKIKYDCVFLSPPWGGP 178 (263)
T ss_pred -CceeEEEechHHHHHHHHhhhhheeeeeecCCCCCCc
Confidence 56899999999876 2333458899999999854
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.4e-08 Score=98.25 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=83.5
Q ss_pred cchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
.+-...|+.|+.... ++..|||+|||||.....++...+ +..++|+|+++.|++.|++++..... ...+.+++
T Consensus 48 ~il~~~~~~ia~~~~--~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p----~~~v~~i~ 121 (301)
T TIGR03438 48 AILERHADEIAAATG--AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP----QLEVHGIC 121 (301)
T ss_pred HHHHHHHHHHHHhhC--CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC----CceEEEEE
Confidence 344555666655543 567899999999999888776654 57899999999999999999875321 23466789
Q ss_pred eccccc-cCCCC----CeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 373 CNVRQL-CFKPA----CVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 373 ~Da~~l-~~~~~----~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+|+.+. ++... ...+++++-+++.- . .+--..+|+++.++|+|| |.+++-
T Consensus 122 gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~--~----~~e~~~~L~~i~~~L~pg-G~~lig 176 (301)
T TIGR03438 122 ADFTQPLALPPEPAAGRRLGFFPGSTIGNF--T----PEEAVAFLRRIRQLLGPG-GGLLIG 176 (301)
T ss_pred EcccchhhhhcccccCCeEEEEecccccCC--C----HHHHHHHHHHHHHhcCCC-CEEEEe
Confidence 998763 33322 23344444443321 1 111347888999999999 988763
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.74 E-value=3e-07 Score=94.05 Aligned_cols=115 Identities=12% Similarity=0.052 Sum_probs=83.6
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc-c-CCCCCeeE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-C-FKPACVDG 387 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-~-~~~~~~D~ 387 (494)
....+||++|||.|+++.+++...+..+|..+|||+.+++.|++.+...+.. --..+++++.+|+... . .+.+.||+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~-~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVG-FDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccc-cCCCceEEEEChHHHHHhhccCCCCCE
Confidence 3467899999999999999886533468999999999999999988643211 1134789999998765 1 22468999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
||+|.+-... . ...-....|++.+.+.|+|| |.++.-+
T Consensus 169 Ii~D~~dp~~--~--~~~L~t~ef~~~~~~~L~pg-Gvlv~q~ 206 (308)
T PLN02366 169 IIVDSSDPVG--P--AQELFEKPFFESVARALRPG-GVVCTQA 206 (308)
T ss_pred EEEcCCCCCC--c--hhhhhHHHHHHHHHHhcCCC-cEEEECc
Confidence 9999754321 1 11123456788999999999 9887643
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-07 Score=91.44 Aligned_cols=123 Identities=17% Similarity=0.192 Sum_probs=88.6
Q ss_pred cchHHHHHHHHHHhC----CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCccccee
Q psy19 294 TLKPTIAYNMVRLAS----PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVS 369 (494)
Q Consensus 294 ~L~e~lAa~ll~la~----~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~ 369 (494)
.+.+.....+..... ...+.+|||+|||+|.++..++.. +..++|+|+++.+++.++.|+...+. ..+.
T Consensus 24 ~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~-----~~~~ 96 (224)
T TIGR01983 24 KMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDPL-----LKIE 96 (224)
T ss_pred HhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCC-----CceE
Confidence 344544455544443 234779999999999999988775 46799999999999999999986543 1357
Q ss_pred eeeeccccccCC-CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 370 PLVCNVRQLCFK-PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 370 ~~~~Da~~l~~~-~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+...|+.+.+.. .++||+|+++-.+.. ..+ ...++..+.++|+|| |.+++.+.+
T Consensus 97 ~~~~d~~~~~~~~~~~~D~i~~~~~l~~----~~~----~~~~l~~~~~~L~~g-G~l~i~~~~ 151 (224)
T TIGR01983 97 YRCTSVEDLAEKGAKSFDVVTCMEVLEH----VPD----PQAFIRACAQLLKPG-GILFFSTIN 151 (224)
T ss_pred EEeCCHHHhhcCCCCCccEEEehhHHHh----CCC----HHHHHHHHHHhcCCC-cEEEEEecC
Confidence 788888777543 368999999654321 112 235677899999999 988876653
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=3e-07 Score=90.63 Aligned_cols=97 Identities=7% Similarity=-0.063 Sum_probs=76.9
Q ss_pred HHHHHhCCCCCC--EEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCC----cccceeeeeecc
Q psy19 302 NMVRLASPIPGD--VFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLN----RELKVSPLVCNV 375 (494)
Q Consensus 302 ~ll~la~~~~g~--~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~----~~~~i~~~~~Da 375 (494)
.|+..+++++|. +|||.++|+|..++++|.. |+.|+++|.++.+....+.|+..+..... +..+++++++|+
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 355566888887 9999999999999999998 78899999999999999999997521111 224678999998
Q ss_pred ccc-cCCCCCeeEEEEcCCCccccCC
Q psy19 376 RQL-CFKPACVDGIVTDLPFGKRVGS 400 (494)
Q Consensus 376 ~~l-~~~~~~~D~IVtNPPYG~r~~~ 400 (494)
..+ .-...+||+|..||||..+...
T Consensus 155 ~~~L~~~~~~fDVVYlDPMfp~~~ks 180 (250)
T PRK10742 155 LTALTDITPRPQVVYLDPMFPHKQKS 180 (250)
T ss_pred HHHHhhCCCCCcEEEECCCCCCCccc
Confidence 776 2112479999999999887644
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-07 Score=103.66 Aligned_cols=115 Identities=16% Similarity=0.057 Sum_probs=83.2
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCC-CeEEEEeCCHHHHHHHHHHHHhccCCC-Cc-ccceeeeeeccccc-cCCCCCe
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPH-TFFVCGDINEKLVLKTQANVLHNSGNL-NR-ELKVSPLVCNVRQL-CFKPACV 385 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~-~~v~G~Did~~al~~Ar~Nl~~~g~~~-~~-~~~i~~~~~Da~~l-~~~~~~~ 385 (494)
.+..+|||+|||+|.++.+++.. +. .+++++|+|+++++.|++|......+. .. ..+++++.+|+++. ....++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 35578999999999999998864 44 699999999999999999643221111 01 24688999999875 2223689
Q ss_pred eEEEEcCCCccccCCccchHHHH-HHHHHHHhhcccCCCcEEEEEe
Q psy19 386 DGIVTDLPFGKRVGSKSNNFLLY-RLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 386 D~IVtNPPYG~r~~~~~~~~~ly-~~fL~~l~rvLkpg~G~lvllt 430 (494)
|+||+|+|..... ....+| ..|++.+.+.|+|| |.+++-+
T Consensus 375 DvIi~D~~~~~~~----~~~~L~t~ef~~~~~~~L~pg-G~lv~~~ 415 (521)
T PRK03612 375 DVIIVDLPDPSNP----ALGKLYSVEFYRLLKRRLAPD-GLLVVQS 415 (521)
T ss_pred CEEEEeCCCCCCc----chhccchHHHHHHHHHhcCCC-eEEEEec
Confidence 9999999864321 112233 35777899999999 9987743
|
|
| >KOG1271|consensus | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.3e-07 Score=86.64 Aligned_cols=137 Identities=14% Similarity=0.121 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhC---CCCC-CEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 297 PTIAYNMVRLAS---PIPG-DVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 297 e~lAa~ll~la~---~~~g-~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
+.+...++.... +... .+|||+|||-|.++..++...-...+.|+|-++.|++.|+.-+++.+. .+.|.|.+
T Consensus 49 ~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~----~n~I~f~q 124 (227)
T KOG1271|consen 49 ERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGF----SNEIRFQQ 124 (227)
T ss_pred HHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCC----CcceeEEE
Confidence 344444444433 3333 389999999999999999874334699999999999999888887764 55689999
Q ss_pred eccccccCCCCCeeEEEEcCCCcc-ccC-Cccc-hHHHHHHHHHHHhhcccCCCcEEEEEecCHH--HHHHHHH
Q psy19 373 CNVRQLCFKPACVDGIVTDLPFGK-RVG-SKSN-NFLLYRLFLIEIGKIVRPQIGRAILLTSDRK--HLIQALH 441 (494)
Q Consensus 373 ~Da~~l~~~~~~~D~IVtNPPYG~-r~~-~~~~-~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~--~l~~~l~ 441 (494)
.|+++-.+..+.||+|+--=-|.. .+. .... -..+|-. .+.++|+|+ |+++|.+++.. .+.+.+.
T Consensus 125 ~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d---~v~~ll~~~-gifvItSCN~T~dELv~~f~ 194 (227)
T KOG1271|consen 125 LDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLD---SVEKLLSPG-GIFVITSCNFTKDELVEEFE 194 (227)
T ss_pred eeccCCcccccceeEEeecCceeeeecCCCCcccceeeehh---hHhhccCCC-cEEEEEecCccHHHHHHHHh
Confidence 999886555567777653221210 000 0001 1144655 466688899 99999999753 3444444
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.7e-07 Score=89.68 Aligned_cols=116 Identities=15% Similarity=0.122 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee-ec
Q psy19 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV-CN 374 (494)
Q Consensus 297 e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~-~D 374 (494)
+.....|..++...+..++|++|++.|.-++..|...| +.+++.+|+|++..+.|++|++.+|+ .+++.++. +|
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~----~~~i~~~~~gd 120 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV----DDRIELLLGGD 120 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC----cceEEEEecCc
Confidence 66666777788877888999999999998888887766 67999999999999999999998876 45577777 58
Q ss_pred cccc-c-CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 375 VRQL-C-FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 375 a~~l-~-~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
+.+. . ...++||+|+.|= -...|..+++.+.++|+|| |.+++
T Consensus 121 al~~l~~~~~~~fDliFIDa-----------dK~~yp~~le~~~~lLr~G-Gliv~ 164 (219)
T COG4122 121 ALDVLSRLLDGSFDLVFIDA-----------DKADYPEYLERALPLLRPG-GLIVA 164 (219)
T ss_pred HHHHHHhccCCCccEEEEeC-----------ChhhCHHHHHHHHHHhCCC-cEEEE
Confidence 8765 2 2357999999862 1344889999999999999 87765
|
|
| >COG1818 Predicted RNA-binding protein, contains THUMP domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.5e-08 Score=89.40 Aligned_cols=58 Identities=28% Similarity=0.293 Sum_probs=55.5
Q ss_pred EEEEEEEEecCcccChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEEEecCcceeccc
Q psy19 219 KFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLP 276 (494)
Q Consensus 219 tFrV~~~~~g~~~~~s~~~~~~v~~aI~d~~~~~vdl~~pdi~i~v~l~~~~~~l~l~ 276 (494)
||+|+|.+.|+|.|+|.+++-.+|+++.+..+..|||++||.-+++.+.++.+.+++-
T Consensus 95 tFaVr~~rRG~~~f~s~~~~v~vg~~v~~~tg~~VdL~~Pd~vv~Vevl~~~a~Isv~ 152 (175)
T COG1818 95 TFAVRTKRRGKHDFTSRDVEVVVGEAVKKATGAEVDLEDPDKVVWVEVLGDRAGISVL 152 (175)
T ss_pred eEEEEEeecCCCCccccceeehhHHHHHHHhCCcccCCCCCEEEEEEEecCcceEEEe
Confidence 8999999999999999999999999999988999999999999999999999998874
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.1e-07 Score=92.69 Aligned_cols=76 Identities=17% Similarity=0.246 Sum_probs=59.5
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt 390 (494)
++.+|||+|||+|.+++.++.. +..|+|+|+++.|++.|++|+...+........+.+...|+..+ +++||+|++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEE
Confidence 5789999999999999998876 67999999999999999999876532100112456777887654 368999998
Q ss_pred c
Q psy19 391 D 391 (494)
Q Consensus 391 N 391 (494)
.
T Consensus 219 ~ 219 (315)
T PLN02585 219 L 219 (315)
T ss_pred c
Confidence 5
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.7e-07 Score=87.76 Aligned_cols=96 Identities=16% Similarity=0.173 Sum_probs=68.7
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
.++..|||+|||+|.++..++.. +..++|+|+++.+++.|++++...+. ..++.+..+|+. ..+++||+|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~----~~~i~~~~~d~~---~~~~~fD~v~ 132 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEAGL----AGNITFEVGDLE---SLLGRFDTVV 132 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCC----ccCcEEEEcCch---hccCCcCEEE
Confidence 46789999999999999988876 56799999999999999999886543 245678888843 2346899999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhccc
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVR 420 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLk 420 (494)
+.=.+.. .. ... ...+++.+.+.++
T Consensus 133 ~~~~l~~-~~-~~~----~~~~l~~l~~~~~ 157 (230)
T PRK07580 133 CLDVLIH-YP-QED----AARMLAHLASLTR 157 (230)
T ss_pred Ecchhhc-CC-HHH----HHHHHHHHHhhcC
Confidence 8543211 11 111 3345556666654
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.2e-07 Score=86.40 Aligned_cols=140 Identities=11% Similarity=0.084 Sum_probs=88.2
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt 390 (494)
.-..+||||||.|.+...+|.+ ...++++|+++.|++.|++.+... ..|++.++|+... .+.+.||+||.
T Consensus 43 ry~~alEvGCs~G~lT~~LA~r--Cd~LlavDis~~Al~~Ar~Rl~~~-------~~V~~~~~dvp~~-~P~~~FDLIV~ 112 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPR--CDRLLAVDISPRALARARERLAGL-------PHVEWIQADVPEF-WPEGRFDLIVL 112 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGG--EEEEEEEES-HHHHHHHHHHTTT--------SSEEEEES-TTT----SS-EEEEEE
T ss_pred ccceeEecCCCccHHHHHHHHh--hCceEEEeCCHHHHHHHHHhcCCC-------CCeEEEECcCCCC-CCCCCeeEEEE
Confidence 3467999999999999999887 468999999999999999998732 3578999999775 34589999887
Q ss_pred cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH------------HHHHHHHHhccccceeeeeEEEcc-
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR------------KHLIQALHITSALWKCRKQIKINM- 457 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~------------~~l~~~l~~~~~l~~~~~~~~v~~- 457 (494)
-= -+..+... +-...++..+...|+|| |.+++-+... +.+.+.+.+. +.....+....
T Consensus 113 SE-VlYYL~~~----~~L~~~l~~l~~~L~pg-G~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~---~~~~~~~~~~~~ 183 (201)
T PF05401_consen 113 SE-VLYYLDDA----EDLRAALDRLVAALAPG-GHLVFGHARDANCRRWGHAAGAETVLEMLQEH---LTEVERVECRGG 183 (201)
T ss_dssp ES--GGGSSSH----HHHHHHHHHHHHTEEEE-EEEEEEEE-HHHHHHTT-S--HHHHHHHHHHH---SEEEEEEEEE-S
T ss_pred eh-HhHcCCCH----HHHHHHHHHHHHHhCCC-CEEEEEEecCCcccccCcccchHHHHHHHHHH---hhheeEEEEcCC
Confidence 31 11222222 22456677899999999 9999876643 1223333321 23444444443
Q ss_pred -CCceEEEEEEee
Q psy19 458 -SGMKSFVFILNR 469 (494)
Q Consensus 458 -Ggl~~~i~v~~~ 469 (494)
-+-+|.+..|.+
T Consensus 184 ~~~~~~~~~~~~~ 196 (201)
T PF05401_consen 184 SPNEDCLLARFRN 196 (201)
T ss_dssp STTSEEEEEEEE-
T ss_pred CCCCceEeeeecC
Confidence 344677766654
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.6e-07 Score=92.94 Aligned_cols=122 Identities=20% Similarity=0.215 Sum_probs=90.8
Q ss_pred HHhCCCCCCEEEEEcCCcChHHHHHHhc--CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc--C
Q psy19 305 RLASPIPGDVFLDPMCGGGTIPVECSLS--YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC--F 380 (494)
Q Consensus 305 ~la~~~~g~~VLDP~CGSGtilIEAA~~--~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~--~ 380 (494)
.+..+++|++|||+|++-|+=...+|.. ..+..|+++|+++.-++..+.|++..|+. ++.+.+.|+..++ .
T Consensus 150 ~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-----nv~~~~~d~~~~~~~~ 224 (355)
T COG0144 150 LVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-----NVIVVNKDARRLAELL 224 (355)
T ss_pred HHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-----ceEEEecccccccccc
Confidence 4568899999999999999654444443 33456799999999999999999998862 2567888887663 1
Q ss_pred CC-CCeeEEEEcCCC---ccccCC--------c---cchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 381 KP-ACVDGIVTDLPF---GKRVGS--------K---SNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 381 ~~-~~~D~IVtNPPY---G~r~~~--------~---~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
.. ..||.|+.|+|= |..-.. . ..+..+-.++|..+.++|||| |.++..|+.
T Consensus 225 ~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~G-G~LVYSTCS 290 (355)
T COG0144 225 PGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPG-GVLVYSTCS 290 (355)
T ss_pred cccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEccC
Confidence 22 259999999993 211000 0 124566778999999999999 999998884
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.56 E-value=9e-07 Score=86.61 Aligned_cols=128 Identities=14% Similarity=0.068 Sum_probs=84.7
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHh------cc-CCCCcccc
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH------NS-GNLNRELK 367 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~------~g-~~~~~~~~ 367 (494)
.+|.|....-.+. ..++.+||+|+||.|.-++-+|.. |..|+|+|+++.||+.+.+.... .+ ...-....
T Consensus 28 pnp~L~~~~~~l~-~~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~ 104 (226)
T PRK13256 28 PNEFLVKHFSKLN-INDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDD 104 (226)
T ss_pred CCHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCc
Confidence 5666666554443 235679999999999999988887 78899999999999998662210 00 00001246
Q ss_pred eeeeeeccccccCC---CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 368 VSPLVCNVRQLCFK---PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 368 i~~~~~Da~~l~~~---~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+++.++|+++++.. .+.||+|+= ++.-..-..+++. +..+.+.++|+|| |++++++-+
T Consensus 105 i~~~~gD~f~l~~~~~~~~~fD~VyD---ra~~~Alpp~~R~---~Y~~~l~~lL~pg-g~llll~~~ 165 (226)
T PRK13256 105 IEIYVADIFNLPKIANNLPVFDIWYD---RGAYIALPNDLRT---NYAKMMLEVCSNN-TQILLLVME 165 (226)
T ss_pred eEEEEccCcCCCccccccCCcCeeee---ehhHhcCCHHHHH---HHHHHHHHHhCCC-cEEEEEEEe
Confidence 78999999998632 247888653 0111111223333 4455899999999 988887653
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.7e-07 Score=88.23 Aligned_cols=125 Identities=16% Similarity=0.143 Sum_probs=82.6
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHH-HHHhccCCC-C-----cccc
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQA-NVLHNSGNL-N-----RELK 367 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~-Nl~~~g~~~-~-----~~~~ 367 (494)
..|.|...+-. ....++.+||+||||.|.-++.+|.. |..|+|+|+++.|++.|.+ |........ . ...+
T Consensus 22 ~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~ 98 (218)
T PF05724_consen 22 PNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGR 98 (218)
T ss_dssp STHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSS
T ss_pred CCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCc
Confidence 44555554444 34457789999999999999999987 7899999999999999843 322111100 0 1246
Q ss_pred eeeeeeccccccCCC-CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 368 VSPLVCNVRQLCFKP-ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 368 i~~~~~Da~~l~~~~-~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
|++.++|++.++... ++||+|.= ++--.....+++.-|. +.+.++|+|| |++.++
T Consensus 99 i~~~~gDfF~l~~~~~g~fD~iyD---r~~l~Alpp~~R~~Ya---~~l~~ll~p~-g~~lLi 154 (218)
T PF05724_consen 99 ITIYCGDFFELPPEDVGKFDLIYD---RTFLCALPPEMRERYA---QQLASLLKPG-GRGLLI 154 (218)
T ss_dssp EEEEES-TTTGGGSCHHSEEEEEE---CSSTTTS-GGGHHHHH---HHHHHCEEEE-EEEEEE
T ss_pred eEEEEcccccCChhhcCCceEEEE---ecccccCCHHHHHHHH---HHHHHHhCCC-CcEEEE
Confidence 789999999986443 47999864 2222223345555565 4899999999 984444
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.55 E-value=4e-07 Score=87.90 Aligned_cols=118 Identities=13% Similarity=0.088 Sum_probs=89.0
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
+.+..++.|-.++.......||++|||+|.-++..|...| +++|+.+|++++..+.|++|++.+|+ .++|+++.+
T Consensus 29 i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~----~~~I~~~~g 104 (205)
T PF01596_consen 29 ISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL----DDRIEVIEG 104 (205)
T ss_dssp HHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG----GGGEEEEES
T ss_pred cCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC----CCcEEEEEe
Confidence 4455555555555544556999999999999998887654 68999999999999999999998875 578999999
Q ss_pred ccccc-c-C----CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 374 NVRQL-C-F----KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 374 Da~~l-~-~----~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
|+.+. + + ..+.||+|+.|=. +. -|..++..+.++|+|| |.+++
T Consensus 105 da~~~l~~l~~~~~~~~fD~VFiDa~-------K~----~y~~y~~~~~~ll~~g-gvii~ 153 (205)
T PF01596_consen 105 DALEVLPELANDGEEGQFDFVFIDAD-------KR----NYLEYFEKALPLLRPG-GVIIA 153 (205)
T ss_dssp -HHHHHHHHHHTTTTTSEEEEEEEST-------GG----GHHHHHHHHHHHEEEE-EEEEE
T ss_pred ccHhhHHHHHhccCCCceeEEEEccc-------cc----chhhHHHHHhhhccCC-eEEEE
Confidence 99764 2 1 1257999999842 22 2777777888999998 86654
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.2e-07 Score=97.84 Aligned_cols=59 Identities=37% Similarity=0.514 Sum_probs=53.9
Q ss_pred EEEEEEEEecCcccChHHHHHHHHHHHHhhc-CCCCCCCCCCEEEEEEEecCcceecccc
Q psy19 219 KFRVTCNRVGKHTVTSMESERAFGGKLNDTY-FWLVDLDDYDIDINLQIRYNEAYVGLPV 277 (494)
Q Consensus 219 tFrV~~~~~g~~~~~s~~~~~~v~~aI~d~~-~~~vdl~~pdi~i~v~l~~~~~~l~l~l 277 (494)
||+|+++|.++|.++|+++++.+|+.|.+.. +++||++|||++|++.+.++.++++...
T Consensus 106 tF~VrarR~~k~~~~S~ei~r~vG~~I~~~~~~~~VdL~nPD~~i~VeI~~d~~yv~~~~ 165 (482)
T PRK01269 106 TFCVRVKRRGKHDFTSIDVERYVGGGLNQHIESAGVDLKNPDVTVHLEIRDDRLYLVTER 165 (482)
T ss_pred eEEEEEEeCCCCCCChHHHHHHHHHHHHHhCCCCceeCCCCCEEEEEEEECCEEEEEEee
Confidence 8999999999889999999999999998665 5799999999999999999999887554
|
|
| >PRK01565 thiamine biosynthesis protein ThiI; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.4e-06 Score=89.28 Aligned_cols=89 Identities=19% Similarity=0.271 Sum_probs=70.4
Q ss_pred EEEEEEEEecCc-ccChHHHHHHHHHHHHhhcC-CCCCCCCCCEEEEEEEecCcceeccccc----cccccccccc-ccc
Q psy19 219 KFRVTCNRVGKH-TVTSMESERAFGGKLNDTYF-WLVDLDDYDIDINLQIRYNEAYVGLPVT----QTSLHRRNIV-EFN 291 (494)
Q Consensus 219 tFrV~~~~~g~~-~~~s~~~~~~v~~aI~d~~~-~~vdl~~pdi~i~v~l~~~~~~l~l~ls----g~sL~~Rgy~-~~~ 291 (494)
||+|+|+|.|+| .|+|+++++.+|++|.+.++ ++|||+|||++|++.+.++.++++.... |-|+-.-+.. ..-
T Consensus 104 tF~Vr~rR~~k~f~~tS~ei~r~vG~~I~~~~~~~~VdL~nPd~~i~vei~~~~ayv~~~~~~g~GGlP~g~~gkvvvll 183 (394)
T PRK01565 104 TFKVEARRSDKSFPLDSMELNRELGAYILENFPNLKVDVKNPDVTLRVEVRKEAAYVYTEKIPGAGGLPVGTSGKALLLL 183 (394)
T ss_pred cEEEEEEECCCCCCCChHHHHHHHHHHHHhhCCCCcccccCCCeEEEEEEEcCeEEEEEEEEecCCCCccCCCCCEEEEE
Confidence 899999999977 89999999999999999886 8999999999999999999999887653 2233333331 122
Q ss_pred cccchHHHHHHHHHHh
Q psy19 292 ITTLKPTIAYNMVRLA 307 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la 307 (494)
...+..++|+.++...
T Consensus 184 SGGiDS~vaa~l~~k~ 199 (394)
T PRK01565 184 SGGIDSPVAGYLAMKR 199 (394)
T ss_pred CCChhHHHHHHHHHHC
Confidence 5567788887776543
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.3e-07 Score=96.80 Aligned_cols=123 Identities=14% Similarity=0.141 Sum_probs=96.8
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc--cCCCCCeeEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL--CFKPACVDGI 388 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l--~~~~~~~D~I 388 (494)
.+..+||+|||.|.++++.|...|+..++|+|+....+..|.+.+...++ .++.++..|+..+ -++++++|.|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-----~N~~~~~~~~~~~~~~~~~~sv~~i 421 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-----TNFLLFPNNLDLILNDLPNNSLDGI 421 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-----CeEEEEcCCHHHHHHhcCcccccEE
Confidence 46789999999999999999999999999999999999998888876654 2456777777544 2566789999
Q ss_pred EEcCC--CccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHH
Q psy19 389 VTDLP--FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALH 441 (494)
Q Consensus 389 VtNPP--YG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~ 441 (494)
..|-| |-+.-.. ..+-+...|+..+.++|+|| |.+.+.|.+..++...+.
T Consensus 422 ~i~FPDPWpKkrh~--krRl~~~~fl~~~~~~Lk~g-G~i~~~TD~~~y~~~~~~ 473 (506)
T PRK01544 422 YILFPDPWIKNKQK--KKRIFNKERLKILQDKLKDN-GNLVFASDIENYFYEAIE 473 (506)
T ss_pred EEECCCCCCCCCCc--cccccCHHHHHHHHHhcCCC-CEEEEEcCCHHHHHHHHH
Confidence 99877 5433222 22345678999999999999 999999988877665443
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.48 E-value=7e-07 Score=88.73 Aligned_cols=94 Identities=15% Similarity=0.158 Sum_probs=81.5
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
....++..++..+.+.+++.||++|+|.|.+..+++.. +..|+++|+|+.++...++.... ..+++++++|
T Consensus 14 ~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~-------~~n~~vi~~D 84 (259)
T COG0030 14 IDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFAP-------YDNLTVINGD 84 (259)
T ss_pred cCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhccc-------ccceEEEeCc
Confidence 67788999999999999999999999999999999888 67899999999999999887752 2457899999
Q ss_pred cccccCCCC-CeeEEEEcCCCccc
Q psy19 375 VRQLCFKPA-CVDGIVTDLPFGKR 397 (494)
Q Consensus 375 a~~l~~~~~-~~D~IVtNPPYG~r 397 (494)
+...+++.- .++.||+|.||...
T Consensus 85 aLk~d~~~l~~~~~vVaNlPY~Is 108 (259)
T COG0030 85 ALKFDFPSLAQPYKVVANLPYNIS 108 (259)
T ss_pred hhcCcchhhcCCCEEEEcCCCccc
Confidence 999987632 68999999999854
|
|
| >KOG1541|consensus | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-06 Score=83.18 Aligned_cols=123 Identities=18% Similarity=0.280 Sum_probs=77.9
Q ss_pred chHHHHHHHHHHhCCCC--CCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 295 LKPTIAYNMVRLASPIP--GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~--g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
+...++..-+.+....+ ..-|||+|||||--+-.... ++...+|+||++.|++.|.+.-- .| .++.
T Consensus 32 IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~--~Gh~wiGvDiSpsML~~a~~~e~-eg---------dlil 99 (270)
T KOG1541|consen 32 IQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSD--SGHQWIGVDISPSMLEQAVEREL-EG---------DLIL 99 (270)
T ss_pred ehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheecc--CCceEEeecCCHHHHHHHHHhhh-hc---------Ceee
Confidence 34444444444443333 56799999999965544333 46889999999999999997221 12 4677
Q ss_pred ecccc-ccCCCCCeeEEEEcCC--C--ccccCCccchHHHHHHHHHHHhhcccCCCcEEEE-Eec
Q psy19 373 CNVRQ-LCFKPACVDGIVTDLP--F--GKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL-LTS 431 (494)
Q Consensus 373 ~Da~~-l~~~~~~~D~IVtNPP--Y--G~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl-lt~ 431 (494)
+|.-. +||++++||.+|+=-- | ......+..-..| ..|+..+...|++| +++++ +.+
T Consensus 100 ~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl-~~FF~tLy~~l~rg-~raV~QfYp 162 (270)
T KOG1541|consen 100 CDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRL-LRFFGTLYSCLKRG-ARAVLQFYP 162 (270)
T ss_pred eecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHH-HHHhhhhhhhhccC-ceeEEEecc
Confidence 78754 4888899998886110 0 0000111112233 36788899999999 99998 444
|
|
| >KOG0820|consensus | Back alignment and domain information |
|---|
Probab=98.45 E-value=1e-06 Score=87.08 Aligned_cols=95 Identities=22% Similarity=0.277 Sum_probs=81.1
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
.++.+++.|+.-|..++++.||+.|-|||.+....... +..|+++|+||.|+....+..... ..+.+.+++++|
T Consensus 42 kNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gt----p~~~kLqV~~gD 115 (315)
T KOG0820|consen 42 KNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGT----PKSGKLQVLHGD 115 (315)
T ss_pred cCHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCC----CccceeeEEecc
Confidence 56888999999999999999999999999998766655 689999999999998888877632 345778999999
Q ss_pred cccccCCCCCeeEEEEcCCCccc
Q psy19 375 VRQLCFKPACVDGIVTDLPFGKR 397 (494)
Q Consensus 375 a~~l~~~~~~~D~IVtNPPYG~r 397 (494)
+...+++ .||.+|+|.||...
T Consensus 116 ~lK~d~P--~fd~cVsNlPyqIS 136 (315)
T KOG0820|consen 116 FLKTDLP--RFDGCVSNLPYQIS 136 (315)
T ss_pred cccCCCc--ccceeeccCCcccc
Confidence 9998764 69999999999754
|
|
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.3e-06 Score=95.23 Aligned_cols=134 Identities=12% Similarity=0.132 Sum_probs=88.8
Q ss_pred chHHHHHHHHHHhCC--CCCCEEEEEcCCcChHHHHHHhcCC----CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccce
Q psy19 295 LKPTIAYNMVRLASP--IPGDVFLDPMCGGGTIPVECSLSYP----HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKV 368 (494)
Q Consensus 295 L~e~lAa~ll~la~~--~~g~~VLDP~CGSGtilIEAA~~~~----~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i 368 (494)
+...++..|..+..+ .++..+.||+||||.+++++..... ...++|.++++.+...|++|+...+... +..
T Consensus 199 Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~---~t~ 275 (501)
T TIGR00497 199 TPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDY---ANF 275 (501)
T ss_pred CcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCc---ccc
Confidence 344556666666554 3678999999999999998654311 2468999999999999999998766421 122
Q ss_pred eeeeecccccc-C-CCCCeeEEEEcCCCccccCCc-------cch----------HHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 369 SPLVCNVRQLC-F-KPACVDGIVTDLPFGKRVGSK-------SNN----------FLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 369 ~~~~~Da~~l~-~-~~~~~D~IVtNPPYG~r~~~~-------~~~----------~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
.+..+|...-+ + ....||.|++||||+...... .+. ..-=..|+..+..+|++| |++.+|
T Consensus 276 ~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~g-G~~aiI 354 (501)
T TIGR00497 276 NIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQE-GTAAIV 354 (501)
T ss_pred CcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCC-CeEEEE
Confidence 33345544322 2 234699999999998643210 000 001124777788899998 998888
Q ss_pred ecC
Q psy19 430 TSD 432 (494)
Q Consensus 430 t~~ 432 (494)
.++
T Consensus 355 ~~~ 357 (501)
T TIGR00497 355 CFP 357 (501)
T ss_pred ecC
Confidence 774
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.4e-07 Score=86.37 Aligned_cols=61 Identities=21% Similarity=0.345 Sum_probs=48.9
Q ss_pred cccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q psy19 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQA 353 (494)
Q Consensus 290 ~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~ 353 (494)
.+|++.+..|+..++.+.. .+|+.||||||||||.+++|... +.+.+|+|+++..++.|++
T Consensus 171 ~h~~~kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 171 KHPTQKPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp --TT-S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred ceeecCCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 4699999999999998876 47899999999999999999888 6789999999999999874
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.3e-06 Score=82.85 Aligned_cols=105 Identities=19% Similarity=0.140 Sum_probs=73.6
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc--cCCCCCee
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL--CFKPACVD 386 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l--~~~~~~~D 386 (494)
+.+|.+|||+|||.|.++-.+... .++..+|+|+|++.+..|.++ | +.++++|+.+- .+++++||
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r----G--------v~Viq~Dld~gL~~f~d~sFD 77 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR----G--------VSVIQGDLDEGLADFPDQSFD 77 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc----C--------CCEEECCHHHhHhhCCCCCcc
Confidence 368999999999999998665543 578999999999988777653 3 26889998654 47789999
Q ss_pred EEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHH
Q psy19 387 GIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQ 438 (494)
Q Consensus 387 ~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~ 438 (494)
.||++= .+..... -..+|+++.|+ | .++++..|+...+..
T Consensus 78 ~VIlsq----tLQ~~~~----P~~vL~EmlRV---g-r~~IVsFPNFg~W~~ 117 (193)
T PF07021_consen 78 YVILSQ----TLQAVRR----PDEVLEEMLRV---G-RRAIVSFPNFGHWRN 117 (193)
T ss_pred EEehHh----HHHhHhH----HHHHHHHHHHh---c-CeEEEEecChHHHHH
Confidence 999842 1211111 22455666665 4 667777787654443
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >KOG2899|consensus | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.5e-06 Score=81.31 Aligned_cols=52 Identities=13% Similarity=0.189 Sum_probs=46.2
Q ss_pred hCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhc
Q psy19 307 ASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN 358 (494)
Q Consensus 307 a~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~ 358 (494)
..|..+.-+||+||-+|++.+..|..+....++|+|||+..|+.|++|++..
T Consensus 54 ~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899|consen 54 KDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred ccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence 3466678899999999999999999887778999999999999999999753
|
|
| >KOG4300|consensus | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.2e-06 Score=80.54 Aligned_cols=112 Identities=20% Similarity=0.182 Sum_probs=80.5
Q ss_pred HhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-CCCCC
Q psy19 306 LASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-FKPAC 384 (494)
Q Consensus 306 la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~~~~~ 384 (494)
+++......||+.|||||+---- .-.-|+..|+++|-++.|-+.|.+.+..+. ......++.++..++| +++++
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k----~~~~~~fvva~ge~l~~l~d~s 145 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKK----PLQVERFVVADGENLPQLADGS 145 (252)
T ss_pred HhcccCccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhcc----CcceEEEEeechhcCcccccCC
Confidence 44444445699999999975321 112357899999999999999999888652 1222348899999997 77899
Q ss_pred eeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 385 VDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 385 ~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+|+||+- ++ +-+.++. .+.|.++.|+|||| |+++++-+
T Consensus 146 ~DtVV~T--lv--LCSve~~----~k~L~e~~rlLRpg-G~iifiEH 183 (252)
T KOG4300|consen 146 YDTVVCT--LV--LCSVEDP----VKQLNEVRRLLRPG-GRIIFIEH 183 (252)
T ss_pred eeeEEEE--EE--EeccCCH----HHHHHHHHHhcCCC-cEEEEEec
Confidence 9999983 22 2223332 35667899999999 99998754
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1e-06 Score=89.45 Aligned_cols=91 Identities=18% Similarity=0.214 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecc
Q psy19 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNV 375 (494)
Q Consensus 297 e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da 375 (494)
|.|...++....+.++..++|.+||.|+....++...+ ...|+|+|+|+.|++.|++++.. ..++.++++|+
T Consensus 5 pVll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-------~~ri~~i~~~f 77 (296)
T PRK00050 5 PVLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-------FGRFTLVHGNF 77 (296)
T ss_pred cccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-------CCcEEEEeCCH
Confidence 45666677777778899999999999999999998864 57999999999999999988753 24678999999
Q ss_pred cccc--CCCC--CeeEEEEcCCC
Q psy19 376 RQLC--FKPA--CVDGIVTDLPF 394 (494)
Q Consensus 376 ~~l~--~~~~--~~D~IVtNPPY 394 (494)
.++. +..+ ++|.|++|+=+
T Consensus 78 ~~l~~~l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 78 SNLKEVLAEGLGKVDGILLDLGV 100 (296)
T ss_pred HHHHHHHHcCCCccCEEEECCCc
Confidence 8763 2212 79999998755
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.2e-06 Score=88.74 Aligned_cols=65 Identities=22% Similarity=0.224 Sum_probs=59.0
Q ss_pred cccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHh
Q psy19 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH 357 (494)
Q Consensus 290 ~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~ 357 (494)
.+|+..+..|...++.+.. .+|+.||||||||||.++.|... +.+.+|+|++++.++.|+..+..
T Consensus 188 ~HPt~kP~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 188 NHPTQKPEALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred cCcccChHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHh
Confidence 4799999999999998876 58899999999999999999888 77899999999999999998863
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.3e-06 Score=80.35 Aligned_cols=99 Identities=20% Similarity=0.198 Sum_probs=68.0
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc-c-cCCCCCeeE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ-L-CFKPACVDG 387 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~-l-~~~~~~~D~ 387 (494)
.++.+|||+|||+|.++..++... +..++|+|+++.+++.|+.+ + +.++++|+.+ + ++++++||+
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~----~--------~~~~~~d~~~~l~~~~~~sfD~ 78 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR----G--------VNVIQGDLDEGLEAFPDKSFDY 78 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc----C--------CeEEEEEhhhcccccCCCCcCE
Confidence 367799999999999988776543 46789999999999888642 1 3577888865 3 355678999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
|+++.++.. +. +. ..+++++.+++ +.+++..++.
T Consensus 79 Vi~~~~l~~-~~---d~----~~~l~e~~r~~----~~~ii~~p~~ 112 (194)
T TIGR02081 79 VILSQTLQA-TR---NP----EEILDEMLRVG----RHAIVSFPNF 112 (194)
T ss_pred EEEhhHhHc-Cc---CH----HHHHHHHHHhC----CeEEEEcCCh
Confidence 999987642 21 22 23455666554 4444444554
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.2e-06 Score=84.78 Aligned_cols=121 Identities=21% Similarity=0.253 Sum_probs=91.9
Q ss_pred HhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc--CCC
Q psy19 306 LASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC--FKP 382 (494)
Q Consensus 306 la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~--~~~ 382 (494)
+..+.+|..|||.|+|.|+=...+|.... ...+++.|+++.-+...+.|++..|+ ..+.+...|+.... ...
T Consensus 80 ~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-----~~v~~~~~D~~~~~~~~~~ 154 (283)
T PF01189_consen 80 ALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-----FNVIVINADARKLDPKKPE 154 (283)
T ss_dssp HHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT------SSEEEEESHHHHHHHHHHT
T ss_pred cccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC-----ceEEEEeeccccccccccc
Confidence 45778999999999999988777665533 57999999999999999999999875 23556668888772 222
Q ss_pred CCeeEEEEcCCC-cccc-CCc------------cchHHHHHHHHHHHhhcc----cCCCcEEEEEecC
Q psy19 383 ACVDGIVTDLPF-GKRV-GSK------------SNNFLLYRLFLIEIGKIV----RPQIGRAILLTSD 432 (494)
Q Consensus 383 ~~~D~IVtNPPY-G~r~-~~~------------~~~~~ly~~fL~~l~rvL----kpg~G~lvllt~~ 432 (494)
..||.|+.|+|= |... ... ..+..+-.++|..+.+++ +|| |+++..|+.
T Consensus 155 ~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~g-G~lvYsTCS 221 (283)
T PF01189_consen 155 SKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPG-GRLVYSTCS 221 (283)
T ss_dssp TTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEE-EEEEEEESH
T ss_pred cccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCC-CeEEEEecc
Confidence 469999999993 2211 101 124456667899999999 999 999999983
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.5e-06 Score=89.62 Aligned_cols=103 Identities=23% Similarity=0.249 Sum_probs=72.4
Q ss_pred CCEEEEEcCCcChHHHHHHhcC----CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeE
Q psy19 312 GDVFLDPMCGGGTIPVECSLSY----PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG 387 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~----~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~ 387 (494)
+.+|+|.|||+|-+...++... ...+|+++|.++.|+...+..+..++. .++|+++++|++++..+ ..+|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w----~~~V~vi~~d~r~v~lp-ekvDI 261 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW----GDKVTVIHGDMREVELP-EKVDI 261 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT----TTTEEEEES-TTTSCHS-S-EEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC----CCeEEEEeCcccCCCCC-CceeE
Confidence 5789999999999987766552 236899999999999887776666653 56799999999999765 58999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEE
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRA 426 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~l 426 (494)
||+-+ .| .++..+ +-...|....++|||+ |.+
T Consensus 262 IVSEl-LG-sfg~nE----l~pE~Lda~~rfLkp~-Gi~ 293 (448)
T PF05185_consen 262 IVSEL-LG-SFGDNE----LSPECLDAADRFLKPD-GIM 293 (448)
T ss_dssp EEE----B-TTBTTT----SHHHHHHHGGGGEEEE-EEE
T ss_pred EEEec-cC-Cccccc----cCHHHHHHHHhhcCCC-CEE
Confidence 99965 23 223222 3345566788999998 643
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.4e-06 Score=82.31 Aligned_cols=116 Identities=12% Similarity=-0.039 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecc
Q psy19 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNV 375 (494)
Q Consensus 297 e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da 375 (494)
+..++.|..++...+...||++|+++|.-++..|... ++.+++.+|+++...+.|+.|++.+|+ .++|+++.+|+
T Consensus 65 ~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~----~~~I~~~~G~a 140 (247)
T PLN02589 65 ADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV----AHKIDFREGPA 140 (247)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC----CCceEEEeccH
Confidence 4555666666665566789999999998877776543 467999999999999999999998875 56789999998
Q ss_pred ccc-c-CC-----CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 376 RQL-C-FK-----PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 376 ~~l-~-~~-----~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
.+. + +. .++||+|+.|= ....|...++.+.++|+|| |.+++
T Consensus 141 ~e~L~~l~~~~~~~~~fD~iFiDa-----------dK~~Y~~y~~~~l~ll~~G-Gviv~ 188 (247)
T PLN02589 141 LPVLDQMIEDGKYHGTFDFIFVDA-----------DKDNYINYHKRLIDLVKVG-GVIGY 188 (247)
T ss_pred HHHHHHHHhccccCCcccEEEecC-----------CHHHhHHHHHHHHHhcCCC-eEEEE
Confidence 775 2 11 25899999972 1344778888889999999 87654
|
|
| >COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.5e-06 Score=87.05 Aligned_cols=103 Identities=22% Similarity=0.291 Sum_probs=72.6
Q ss_pred EEEEEEEEecC-cccChHHHHHHHHHHHHhhc-CCCCCCCCCCEEEEEEEecCcceecccccc----ccccccccc-ccc
Q psy19 219 KFRVTCNRVGK-HTVTSMESERAFGGKLNDTY-FWLVDLDDYDIDINLQIRYNEAYVGLPVTQ----TSLHRRNIV-EFN 291 (494)
Q Consensus 219 tFrV~~~~~g~-~~~~s~~~~~~v~~aI~d~~-~~~vdl~~pdi~i~v~l~~~~~~l~l~lsg----~sL~~Rgy~-~~~ 291 (494)
||+|+|+|.++ |.|+|.++++.+|++|.+.+ .+.||+++||++|++.+.++.++++..... -|+---|.- ..-
T Consensus 103 tF~V~arR~~k~f~~~S~ev~~~vG~~i~~~~~~~~Vdl~~Pdv~i~iEIr~~~ayi~~~~~~G~GGLPvGt~Gk~l~Ll 182 (383)
T COG0301 103 TFKVRARRAGKEFPFTSLEVNRYVGEAILENIESAGVDLKNPDVEIHIEIREDKAYIYTERIKGPGGLPVGTQGKVLLLL 182 (383)
T ss_pred eEEEEEEeCCCCCCCCHHHHHHHHHHHHHhhcccceeecCCCCeEEEEEEecCeEEEEEeeeccCCCCccccCCcEEEEE
Confidence 99999999997 99999999999999999985 579999999999999999999998766532 122222221 112
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChH
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTI 325 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGti 325 (494)
...+..-+|+.|+. +.|..|-=++|.++..
T Consensus 183 SGGIDSPVA~~l~m----kRG~~v~~v~f~~~p~ 212 (383)
T COG0301 183 SGGIDSPVAAWLMM----KRGVEVIPVHFGNPPY 212 (383)
T ss_pred eCCCChHHHHHHHH----hcCCEEEEEEEcCCCC
Confidence 33455555555444 2444555555544433
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.7e-06 Score=78.98 Aligned_cols=122 Identities=17% Similarity=0.227 Sum_probs=74.3
Q ss_pred HHHHHHHHHHh------CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 297 PTIAYNMVRLA------SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 297 e~lAa~ll~la------~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
..||..|.... ....+.+||++|||+|..++.+|.......|+..|.++ .+...+.|++.++. .....+.+
T Consensus 25 ~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~--~~~~~v~v 101 (173)
T PF10294_consen 25 LVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS--LLDGRVSV 101 (173)
T ss_dssp HHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT----------EE
T ss_pred HHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc--cccccccC
Confidence 35566666642 34577899999999999999998885567999999999 99999999998762 12344556
Q ss_pred eeeccccc---c-CCCCCeeEEEE-cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 371 LVCNVRQL---C-FKPACVDGIVT-DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 371 ~~~Da~~l---~-~~~~~~D~IVt-NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
...|+.+- + .....||+||. |-=|. ..++..++.-+.++|+++ |.+++...
T Consensus 102 ~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~---------~~~~~~L~~tl~~ll~~~-~~vl~~~~ 157 (173)
T PF10294_consen 102 RPLDWGDELDSDLLEPHSFDVILASDVLYD---------EELFEPLVRTLKRLLKPN-GKVLLAYK 157 (173)
T ss_dssp EE--TTS-HHHHHHS-SSBSEEEEES--S----------GGGHHHHHHHHHHHBTT--TTEEEEEE
T ss_pred cEEEecCcccccccccccCCEEEEecccch---------HHHHHHHHHHHHHHhCCC-CEEEEEeC
Confidence 55555331 1 23358998875 44342 234667777899999998 76555444
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK08384 thiamine biosynthesis protein ThiI; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.7e-06 Score=88.32 Aligned_cols=90 Identities=22% Similarity=0.297 Sum_probs=70.3
Q ss_pred EEEEEEEEecC-cccChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEEEecCcceeccccc----cccccccccc-cccc
Q psy19 219 KFRVTCNRVGK-HTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVT----QTSLHRRNIV-EFNI 292 (494)
Q Consensus 219 tFrV~~~~~g~-~~~~s~~~~~~v~~aI~d~~~~~vdl~~pdi~i~v~l~~~~~~l~l~ls----g~sL~~Rgy~-~~~~ 292 (494)
||+|+|+|.++ |.|+|+++++.+|++|.+.++++||++|||++|+|.+.++.++++.... |-|+---|.. ..-.
T Consensus 109 tF~V~~rR~~k~f~~tS~ei~~~vG~~i~~~~~~~Vdl~~Pd~~i~vEir~~~ayv~~~~~~G~GGLPvGs~gkvlvllS 188 (381)
T PRK08384 109 RFRVTARRITKEFPLKSPEIQAKVGEYILENEESEVDLHNYDIEVGVELMEGKAYVFVDKVKAWGGLPIGTQGKVVALLS 188 (381)
T ss_pred eEEEEEEeCCCCCCCChHHHHHHHHHHHHhcCCCCccCcCCCEEEEEEEEeCeEEEEEEEeecCCCCccCCCCcEEEEEe
Confidence 89999999995 7999999999999999988889999999999999999999999886653 1233333331 1224
Q ss_pred ccchHHHHHHHHHHhC
Q psy19 293 TTLKPTIAYNMVRLAS 308 (494)
Q Consensus 293 a~L~e~lAa~ll~la~ 308 (494)
......+|+.|+.-.+
T Consensus 189 GGiDSpVAa~ll~krG 204 (381)
T PRK08384 189 GGIDSPVAAFLMMKRG 204 (381)
T ss_pred CChHHHHHHHHHHHcC
Confidence 5577777777766543
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.1e-05 Score=80.71 Aligned_cols=93 Identities=17% Similarity=0.172 Sum_probs=78.9
Q ss_pred cchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
-.++.++..++..+++.++..|+|+|+|.|.+..+.+.. +..++++|+|+..++..+..... ..+++++++
T Consensus 13 L~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~--~~~v~~vE~d~~~~~~L~~~~~~-------~~~~~vi~~ 83 (262)
T PF00398_consen 13 LVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKR--GKRVIAVEIDPDLAKHLKERFAS-------NPNVEVING 83 (262)
T ss_dssp EEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH--SSEEEEEESSHHHHHHHHHHCTT-------CSSEEEEES
T ss_pred eCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc--cCcceeecCcHhHHHHHHHHhhh-------cccceeeec
Confidence 368999999999999999999999999999999999887 47999999999999998886652 245789999
Q ss_pred ccccccCCC---CCeeEEEEcCCCc
Q psy19 374 NVRQLCFKP---ACVDGIVTDLPFG 395 (494)
Q Consensus 374 Da~~l~~~~---~~~D~IVtNPPYG 395 (494)
|+.++.... .....||+|+||.
T Consensus 84 D~l~~~~~~~~~~~~~~vv~NlPy~ 108 (262)
T PF00398_consen 84 DFLKWDLYDLLKNQPLLVVGNLPYN 108 (262)
T ss_dssp -TTTSCGGGHCSSSEEEEEEEETGT
T ss_pred chhccccHHhhcCCceEEEEEeccc
Confidence 999986543 4678999999994
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.4e-06 Score=84.76 Aligned_cols=80 Identities=23% Similarity=0.130 Sum_probs=47.9
Q ss_pred CCEEEEEcCCcChH-HHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhc-cCCCCcccceeeeeec----cccc-cCCCCC
Q psy19 312 GDVFLDPMCGGGTI-PVECSLSYPHTFFVCGDINEKLVLKTQANVLHN-SGNLNRELKVSPLVCN----VRQL-CFKPAC 384 (494)
Q Consensus 312 g~~VLDP~CGSGti-lIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~-g~~~~~~~~i~~~~~D----a~~l-~~~~~~ 384 (494)
..++||+|||.-.| ++-++..+ +-.++|.|||+.+++.|++|+..+ ++ ..+|.++... ++.. ......
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L----~~~I~l~~~~~~~~i~~~i~~~~e~ 177 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNL----ESRIELRKQKNPDNIFDGIIQPNER 177 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-----TTTEEEEE--ST-SSTTTSTT--S-
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhcccc----ccceEEEEcCCccccchhhhcccce
Confidence 45799999999877 44445443 678999999999999999999988 54 5566766542 2221 112358
Q ss_pred eeEEEEcCCCcc
Q psy19 385 VDGIVTDLPFGK 396 (494)
Q Consensus 385 ~D~IVtNPPYG~ 396 (494)
||+.+|||||..
T Consensus 178 ~dftmCNPPFy~ 189 (299)
T PF05971_consen 178 FDFTMCNPPFYS 189 (299)
T ss_dssp EEEEEE-----S
T ss_pred eeEEecCCcccc
Confidence 999999999843
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.4e-05 Score=81.10 Aligned_cols=114 Identities=17% Similarity=0.131 Sum_probs=82.3
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc-cCCCCCeeEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-CFKPACVDGIV 389 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-~~~~~~~D~IV 389 (494)
....||-+|+|.|+++.+++...+...+..+|||+.+++.|++++...+.. --..+++++.+|++.. ....++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~-~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREA-FCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccccc-ccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 345899999999999999887655568999999999999999998643210 1135789999999876 32346899999
Q ss_pred EcCCCccccCCccchHHHH-HHHHH-HHhhcccCCCcEEEEE
Q psy19 390 TDLPFGKRVGSKSNNFLLY-RLFLI-EIGKIVRPQIGRAILL 429 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly-~~fL~-~l~rvLkpg~G~lvll 429 (494)
.|.+-....+. ...|| ..|++ .+.+.|+|| |.+++-
T Consensus 182 ~D~~dp~~~~~---~~~Lyt~eF~~~~~~~~L~p~-Gvlv~q 219 (336)
T PLN02823 182 GDLADPVEGGP---CYQLYTKSFYERIVKPKLNPG-GIFVTQ 219 (336)
T ss_pred ecCCCccccCc---chhhccHHHHHHHHHHhcCCC-cEEEEe
Confidence 99742211111 12234 35676 788999999 987654
|
|
| >TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI | Back alignment and domain information |
|---|
Probab=98.23 E-value=7.7e-06 Score=85.94 Aligned_cols=90 Identities=22% Similarity=0.294 Sum_probs=69.9
Q ss_pred EEEEEEEEecC-cccChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEEEecCcceecccccc----ccccccccc-cccc
Q psy19 219 KFRVTCNRVGK-HTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQ----TSLHRRNIV-EFNI 292 (494)
Q Consensus 219 tFrV~~~~~g~-~~~~s~~~~~~v~~aI~d~~~~~vdl~~pdi~i~v~l~~~~~~l~l~lsg----~sL~~Rgy~-~~~~ 292 (494)
||+|+|+|.|+ ..++|+++++.+|.+|.+.++++|||+|||++|+|.+.++.++++..... -|+-.-+.. ..-.
T Consensus 101 tF~Vr~kR~~k~f~~~S~ei~r~~G~~i~~~~~~~VdL~nPd~~i~vei~~~~ayi~~~~~~g~gGlP~g~~~kvlvllS 180 (371)
T TIGR00342 101 TFKVRTKRRGKDFPLNSVEVNKYVGGGIVEKIGLKVDLTNPDITVHIEIREDEFLIITERYEGIGGLPVGTQGKVLALLS 180 (371)
T ss_pred cEEEEEEECCCCCCCChHHHHHHHHHHHHHHcCCcccccCCCEEEEEEEECCEEEEEEEeEecCCCcCcCcCCeEEEEec
Confidence 89999999984 45779999999999999998899999999999999999999999866542 233333331 2234
Q ss_pred ccchHHHHHHHHHHhC
Q psy19 293 TTLKPTIAYNMVRLAS 308 (494)
Q Consensus 293 a~L~e~lAa~ll~la~ 308 (494)
..+...+|+.++...+
T Consensus 181 GGiDS~vaa~ll~krG 196 (371)
T TIGR00342 181 GGIDSPVAAFMMMKRG 196 (371)
T ss_pred CCchHHHHHHHHHHcC
Confidence 5677777777775543
|
The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis. |
| >KOG1499|consensus | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.7e-06 Score=85.23 Aligned_cols=99 Identities=21% Similarity=0.223 Sum_probs=77.3
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt 390 (494)
.+.+|||.|||||-+.+.+|+.+ ..+|+|+|.+.-+ +.|++.+..|++ .+.++++++.+.++.+|...+|+||+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~~----~~ii~vi~gkvEdi~LP~eKVDiIvS 133 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNGL----EDVITVIKGKVEDIELPVEKVDIIVS 133 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcCc----cceEEEeecceEEEecCccceeEEee
Confidence 67899999999999999999986 4689999998877 999999998875 56789999988887666679999999
Q ss_pred cCCCccccCCccchHHHHHHHHHHH----hhcccCCCcE
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEI----GKIVRPQIGR 425 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l----~rvLkpg~G~ 425 (494)
. .+|. ..||..+|..+ -+.|+|| |.
T Consensus 134 E-----WMGy----~Ll~EsMldsVl~ARdkwL~~~-G~ 162 (346)
T KOG1499|consen 134 E-----WMGY----FLLYESMLDSVLYARDKWLKEG-GL 162 (346)
T ss_pred h-----hhhH----HHHHhhhhhhhhhhhhhccCCC-ce
Confidence 3 4443 23444444433 3478888 63
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.3e-06 Score=82.01 Aligned_cols=66 Identities=18% Similarity=0.188 Sum_probs=57.5
Q ss_pred cccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhc
Q psy19 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN 358 (494)
Q Consensus 290 ~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~ 358 (494)
.+|++.+..|...++.... .+|+.||||||||||.+++|... +...+|+|+++..++.|.+.+...
T Consensus 143 ~hp~~kP~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 143 HHPTEKPVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCCcHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHH
Confidence 4689999999998887654 47889999999999999998887 678999999999999999888753
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.3e-06 Score=76.32 Aligned_cols=81 Identities=12% Similarity=0.129 Sum_probs=61.0
Q ss_pred EEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhc
Q psy19 339 VCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKI 418 (494)
Q Consensus 339 ~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rv 418 (494)
+|+|+++.|++.|+++....+. +...+++++++|+.++|+++++||+|++. |+.+.- .+ ...+++++.|+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~--~~~~~i~~~~~d~~~lp~~~~~fD~v~~~--~~l~~~--~d----~~~~l~ei~rv 70 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR--SCYKCIEWIEGDAIDLPFDDCEFDAVTMG--YGLRNV--VD----RLRAMKEMYRV 70 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc--cCCCceEEEEechhhCCCCCCCeeEEEec--chhhcC--CC----HHHHHHHHHHH
Confidence 4899999999999887653321 11235789999999999888899999984 444321 12 34677799999
Q ss_pred ccCCCcEEEEEe
Q psy19 419 VRPQIGRAILLT 430 (494)
Q Consensus 419 Lkpg~G~lvllt 430 (494)
|||| |+++++.
T Consensus 71 LkpG-G~l~i~d 81 (160)
T PLN02232 71 LKPG-SRVSILD 81 (160)
T ss_pred cCcC-eEEEEEE
Confidence 9999 9998763
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.7e-05 Score=76.45 Aligned_cols=108 Identities=12% Similarity=0.063 Sum_probs=79.3
Q ss_pred HHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC
Q psy19 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380 (494)
Q Consensus 301 a~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~ 380 (494)
..++....+.+...|+|+|+|+|.++++++..+|+.+++..|+ |..++.+++ .+++++..+|++ -++
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----------~~rv~~~~gd~f-~~~ 156 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----------ADRVEFVPGDFF-DPL 156 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----------TTTEEEEES-TT-TCC
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----------ccccccccccHH-hhh
Confidence 4455566777778999999999999999999999999999999 888888888 245789999998 455
Q ss_pred CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCC-CcEEEEE
Q psy19 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQ-IGRAILL 429 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg-~G~lvll 429 (494)
+. +|+++.- ++ -+.-..+--..+|+.+.+.|+|| .|+++|+
T Consensus 157 P~--~D~~~l~-----~v-Lh~~~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 157 PV--ADVYLLR-----HV-LHDWSDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp SS--ESEEEEE-----SS-GGGS-HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred cc--ccceeee-----hh-hhhcchHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 53 9998872 22 11112233456778899999974 3887774
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >KOG1500|consensus | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.5e-05 Score=79.20 Aligned_cols=113 Identities=14% Similarity=0.195 Sum_probs=81.9
Q ss_pred HHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC
Q psy19 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380 (494)
Q Consensus 301 a~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~ 380 (494)
++++.-..--.+.+|||.|||||.+..-||+.+. .+|++++.+. |.+.|+.-+..++ +.++|.++.+-+.++.+
T Consensus 167 ~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~-MAqyA~~Lv~~N~----~~~rItVI~GKiEdieL 240 (517)
T KOG1500|consen 167 RAILENHSDFQDKIVLDVGAGSGILSFFAAQAGA-KKVYAVEASE-MAQYARKLVASNN----LADRITVIPGKIEDIEL 240 (517)
T ss_pred HHHHhcccccCCcEEEEecCCccHHHHHHHHhCc-ceEEEEehhH-HHHHHHHHHhcCC----ccceEEEccCccccccC
Confidence 3344333334678999999999999999988753 6899999865 5688888877664 46788999999999887
Q ss_pred CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEE
Q psy19 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAI 427 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lv 427 (494)
+ +..|+||+.| .|..+-. +.+.+-|- .+.++|+|. |.++
T Consensus 241 P-Ek~DviISEP-MG~mL~N-ERMLEsYl----~Ark~l~P~-GkMf 279 (517)
T KOG1500|consen 241 P-EKVDVIISEP-MGYMLVN-ERMLESYL----HARKWLKPN-GKMF 279 (517)
T ss_pred c-hhccEEEecc-chhhhhh-HHHHHHHH----HHHhhcCCC-Cccc
Confidence 6 6899999986 3433322 23444454 366899998 6554
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0052 Score=63.53 Aligned_cols=117 Identities=16% Similarity=0.089 Sum_probs=72.2
Q ss_pred EEE-EEecCcceeccccccc-ccccccc-c--ccccccchHHH--HHHHHHHh-------CCCCCCEEEEEcCCcChHHH
Q psy19 262 INL-QIRYNEAYVGLPVTQT-SLHRRNI-V--EFNITTLKPTI--AYNMVRLA-------SPIPGDVFLDPMCGGGTIPV 327 (494)
Q Consensus 262 i~v-~l~~~~~~l~l~lsg~-sL~~Rgy-~--~~~~a~L~e~l--Aa~ll~la-------~~~~g~~VLDP~CGSGtilI 327 (494)
+++ .+..+.+++|+....- |.+.-|. + +...+|-|..+ ..++..+. ...+|.++||+||++|++.-
T Consensus 148 lh~~f~~~~~~~vG~s~~~~~s~~~~Gi~Rl~~p~~apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~ 227 (357)
T PRK11760 148 LHVFFIAPGCCYVGYSYSNNSSPWPMGIPRLKFPADAPSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTY 227 (357)
T ss_pred EEEEEEeCCEEEEEeccCCCCCcCCCCcccccCCCCCCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHH
Confidence 444 3578899999887642 2333333 1 11233333322 11111111 23589999999999999999
Q ss_pred HHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEEcC
Q psy19 328 ECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDL 392 (494)
Q Consensus 328 EAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNP 392 (494)
.++.. ++.|+|+|..+-+ .++.. ..+|.....|.+......+.+|+||||.
T Consensus 228 ~L~~r--G~~V~AVD~g~l~-----~~L~~-------~~~V~h~~~d~fr~~p~~~~vDwvVcDm 278 (357)
T PRK11760 228 QLVRR--GMFVTAVDNGPMA-----QSLMD-------TGQVEHLRADGFKFRPPRKNVDWLVCDM 278 (357)
T ss_pred HHHHc--CCEEEEEechhcC-----HhhhC-------CCCEEEEeccCcccCCCCCCCCEEEEec
Confidence 88887 6799999965522 22221 2346777788776633246899999985
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0002 Score=69.20 Aligned_cols=141 Identities=18% Similarity=0.099 Sum_probs=96.2
Q ss_pred EEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCC-CeeEEEEcCC
Q psy19 315 FLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPA-CVDGIVTDLP 393 (494)
Q Consensus 315 VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~-~~D~IVtNPP 393 (494)
|.|+||--|.+++.++......+++++|+++..++.|+.|+..+|+ .+++.+..+|-... +..+ ..|.||.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l----~~~i~~rlgdGL~~-l~~~e~~d~ivI--- 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL----EDRIEVRLGDGLEV-LKPGEDVDTIVI--- 72 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-----TTTEEEEE-SGGGG---GGG---EEEE---
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC----cccEEEEECCcccc-cCCCCCCCEEEE---
Confidence 6899999999999999986656899999999999999999998875 56789999996653 2223 3676554
Q ss_pred CccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec--CHHHHHHHHHhccccceeeeeEEEccCCceEEEEEEeeCC
Q psy19 394 FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS--DRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTA 471 (494)
Q Consensus 394 YG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~--~~~~l~~~l~~~~~l~~~~~~~~v~~Ggl~~~i~v~~~~~ 471 (494)
--+| ..+...+|......++.. .+++ +.| +...+++.+...| |.......+.-++.--.|....+..
T Consensus 73 --AGMG-----G~lI~~ILe~~~~~~~~~-~~lI-LqP~~~~~~LR~~L~~~g--f~I~~E~lv~e~~~~YeIi~~~~~~ 141 (205)
T PF04816_consen 73 --AGMG-----GELIIEILEAGPEKLSSA-KRLI-LQPNTHAYELRRWLYENG--FEIIDEDLVEENGRFYEIIVAERGE 141 (205)
T ss_dssp --EEE------HHHHHHHHHHTGGGGTT---EEE-EEESS-HHHHHHHHHHTT--EEEEEEEEEEETTEEEEEEEEEESS
T ss_pred --ecCC-----HHHHHHHHHhhHHHhccC-CeEE-EeCCCChHHHHHHHHHCC--CEEEEeEEEeECCEEEEEEEEEeCC
Confidence 0222 345677888887777654 4544 445 3455788888887 6778887877767666666776666
Q ss_pred CCC
Q psy19 472 DLF 474 (494)
Q Consensus 472 ~~~ 474 (494)
...
T Consensus 142 ~~~ 144 (205)
T PF04816_consen 142 EKP 144 (205)
T ss_dssp S--
T ss_pred CCC
Confidence 555
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.98 E-value=4e-05 Score=74.04 Aligned_cols=123 Identities=19% Similarity=0.118 Sum_probs=75.2
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhc-------cCCCCc
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN-------SGNLNR 364 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~-------g~~~~~ 364 (494)
-..+.+...+.++..++++++++++|+|||.|...+.||+..+-...+|+|+.+...+.|+.+.+.. |. .
T Consensus 23 YGEi~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~---~ 99 (205)
T PF08123_consen 23 YGEISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK---R 99 (205)
T ss_dssp GGGCHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB----
T ss_pred eeecCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc---c
Confidence 4457778888889999999999999999999999999998865556999999999999888765432 22 1
Q ss_pred ccceeeeeeccccccCCC---CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEE
Q psy19 365 ELKVSPLVCNVRQLCFKP---ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAI 427 (494)
Q Consensus 365 ~~~i~~~~~Da~~l~~~~---~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lv 427 (494)
...+.+.++|+.+.++.. ...|+|++|== -. . .++.. .|.++..-||+| -+++
T Consensus 100 ~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~---~F--~---~~l~~-~L~~~~~~lk~G-~~II 155 (205)
T PF08123_consen 100 PGKVELIHGDFLDPDFVKDIWSDADVVFVNNT---CF--D---PDLNL-ALAELLLELKPG-ARII 155 (205)
T ss_dssp --EEEEECS-TTTHHHHHHHGHC-SEEEE--T---TT------HHHHH-HHHHHHTTS-TT--EEE
T ss_pred cccceeeccCccccHhHhhhhcCCCEEEEecc---cc--C---HHHHH-HHHHHHhcCCCC-CEEE
Confidence 245778889987653211 24688988731 11 1 11222 234566678887 5543
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.9e-05 Score=69.06 Aligned_cols=82 Identities=18% Similarity=0.016 Sum_probs=60.6
Q ss_pred HHHHHHHHHhCCCCCCEEEEEcCCcCh-HHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccc
Q psy19 298 TIAYNMVRLASPIPGDVFLDPMCGGGT-IPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVR 376 (494)
Q Consensus 298 ~lAa~ll~la~~~~g~~VLDP~CGSGt-ilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~ 376 (494)
.+|..+........+.+++|+|||+|. ++..++.. +..|+|+|+++.+++.|+.+. ++++..|.+
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~~------------~~~v~dDlf 68 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKLG------------LNAFVDDLF 68 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhC------------CeEEECcCC
Confidence 456665555444456789999999996 87777766 789999999999998887763 257888998
Q ss_pred cccCC-CCCeeEEEE-cCC
Q psy19 377 QLCFK-PACVDGIVT-DLP 393 (494)
Q Consensus 377 ~l~~~-~~~~D~IVt-NPP 393 (494)
+.++. -..+|+|.+ +||
T Consensus 69 ~p~~~~y~~a~liysirpp 87 (134)
T PRK04148 69 NPNLEIYKNAKLIYSIRPP 87 (134)
T ss_pred CCCHHHHhcCCEEEEeCCC
Confidence 76432 146888875 444
|
|
| >KOG3010|consensus | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.6e-05 Score=77.60 Aligned_cols=107 Identities=16% Similarity=0.077 Sum_probs=67.1
Q ss_pred hCCCCCC-EEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCe
Q psy19 307 ASPIPGD-VFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACV 385 (494)
Q Consensus 307 a~~~~g~-~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~ 385 (494)
+...++. .++|.|||+|--++.+|..+ -.|+|+|+++.|++.|++--...-. .-...+...+...|.-.++++
T Consensus 28 a~~~~~h~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y~----~t~~~ms~~~~v~L~g~e~SV 101 (261)
T KOG3010|consen 28 ASRTEGHRLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTYC----HTPSTMSSDEMVDLLGGEESV 101 (261)
T ss_pred HhhCCCcceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCcccc----cCCccccccccccccCCCcce
Confidence 3444443 89999999997777777764 4799999999999988864432111 011223333444443235799
Q ss_pred eEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 386 DGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 386 D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
|+|++= ..-.--++. +|++.+.|+||+.||.+++
T Consensus 102 DlI~~A-----qa~HWFdle----~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 102 DLITAA-----QAVHWFDLE----RFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred eeehhh-----hhHHhhchH----HHHHHHHHHcCCCCCEEEE
Confidence 999881 111112344 4555899999987355554
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00025 Score=68.31 Aligned_cols=149 Identities=15% Similarity=0.210 Sum_probs=82.1
Q ss_pred cccccccc-ccccchHHHHHHHHHHhC-CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccC
Q psy19 283 HRRNIVEF-NITTLKPTIAYNMVRLAS-PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSG 360 (494)
Q Consensus 283 ~~Rgy~~~-~~a~L~e~lAa~ll~la~-~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~ 360 (494)
++.||+.. ..=|.+| ...++.... ..++.+|.|.|||-+.++-... ....|+..|+-..
T Consensus 44 YH~Gfr~Qv~~WP~nP--vd~iI~~l~~~~~~~viaD~GCGdA~la~~~~---~~~~V~SfDLva~-------------- 104 (219)
T PF05148_consen 44 YHEGFRQQVKKWPVNP--VDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP---NKHKVHSFDLVAP-------------- 104 (219)
T ss_dssp HHHHHHHHHCTSSS-H--HHHHHHHHCTS-TTS-EEEES-TT-HHHHH-----S---EEEEESS-S--------------
T ss_pred HHHHHHHHHhcCCCCc--HHHHHHHHHhcCCCEEEEECCCchHHHHHhcc---cCceEEEeeccCC--------------
Confidence 45677522 2333443 233444443 3346799999999998874322 2357899998531
Q ss_pred CCCcccceeeeeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE--ec---CHHH
Q psy19 361 NLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL--TS---DRKH 435 (494)
Q Consensus 361 ~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll--t~---~~~~ 435 (494)
+-.+..+|+..+|++++++|++|+-.- -+|+. |..|+.|+.|+|||| |.++|. .+ +...
T Consensus 105 ------n~~Vtacdia~vPL~~~svDv~VfcLS---LMGTn------~~~fi~EA~RvLK~~-G~L~IAEV~SRf~~~~~ 168 (219)
T PF05148_consen 105 ------NPRVTACDIANVPLEDESVDVAVFCLS---LMGTN------WPDFIREANRVLKPG-GILKIAEVKSRFENVKQ 168 (219)
T ss_dssp ------STTEEES-TTS-S--TT-EEEEEEES------SS-------HHHHHHHHHHHEEEE-EEEEEEEEGGG-S-HHH
T ss_pred ------CCCEEEecCccCcCCCCceeEEEEEhh---hhCCC------cHHHHHHHHheeccC-cEEEEEEecccCcCHHH
Confidence 114788999999999999999998542 12221 788999999999999 998883 33 4455
Q ss_pred HHHHHHhccccceeeeeEEEccCCceEEEEEEeeCC
Q psy19 436 LIQALHITSALWKCRKQIKINMSGMKSFVFILNRTA 471 (494)
Q Consensus 436 l~~~l~~~~~l~~~~~~~~v~~Ggl~~~i~v~~~~~ 471 (494)
|.+.+...|+ ....+ ...| . .-.++.|.+..
T Consensus 169 F~~~~~~~GF--~~~~~-d~~n-~-~F~~f~F~K~~ 199 (219)
T PF05148_consen 169 FIKALKKLGF--KLKSK-DESN-K-HFVLFEFKKIR 199 (219)
T ss_dssp HHHHHHCTTE--EEEEE-E--S-T-TEEEEEEEE-S
T ss_pred HHHHHHHCCC--eEEec-ccCC-C-eEEEEEEEEcC
Confidence 7777887773 44332 2222 2 33556666554
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.92 E-value=7e-05 Score=75.81 Aligned_cols=104 Identities=18% Similarity=0.109 Sum_probs=67.8
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt 390 (494)
.|.+|||+|||+|..+.+++...+ ..|+|+|-++..+...+.--+..|. ...+...-.-+.++|. .+.||+|+|
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg~----~~~~~~lplgvE~Lp~-~~~FDtVF~ 188 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLGQ----DPPVFELPLGVEDLPN-LGAFDTVFS 188 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhCC----CccEEEcCcchhhccc-cCCcCEEEE
Confidence 678999999999999999998853 4799999988876665443333321 1122233234555555 578999998
Q ss_pred cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+|--..... --..|.++...|++| |.+++-
T Consensus 189 -------MGVLYHrr~-Pl~~L~~Lk~~L~~g-GeLvLE 218 (315)
T PF08003_consen 189 -------MGVLYHRRS-PLDHLKQLKDSLRPG-GELVLE 218 (315)
T ss_pred -------eeehhccCC-HHHHHHHHHHhhCCC-CEEEEE
Confidence 221100000 013566789999999 988863
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0002 Score=66.37 Aligned_cols=124 Identities=15% Similarity=0.103 Sum_probs=93.6
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
-.|..+-+|+.|+...+|..|..||+.|.|||.|.-..... -+...++++|.+++-+....+--. .+++
T Consensus 29 I~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p----------~~~i 98 (194)
T COG3963 29 ILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP----------GVNI 98 (194)
T ss_pred ecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC----------Cccc
Confidence 45677889999999999999999999999999998766554 334679999999999877665432 2368
Q ss_pred eeecccccc-----CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 371 LVCNVRQLC-----FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 371 ~~~Da~~l~-----~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+++|+.++. ..+..||.|||-.|+-. +..+. --++|+.+...|.+| |-++-++..
T Consensus 99 i~gda~~l~~~l~e~~gq~~D~viS~lPll~-~P~~~-----~iaile~~~~rl~~g-g~lvqftYg 158 (194)
T COG3963 99 INGDAFDLRTTLGEHKGQFFDSVISGLPLLN-FPMHR-----RIAILESLLYRLPAG-GPLVQFTYG 158 (194)
T ss_pred cccchhhHHHHHhhcCCCeeeeEEecccccc-CcHHH-----HHHHHHHHHHhcCCC-CeEEEEEec
Confidence 999998874 33457999999888642 22221 125666788889998 988887765
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=97.91 E-value=6.7e-05 Score=77.63 Aligned_cols=125 Identities=18% Similarity=0.234 Sum_probs=78.6
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCC-----CCcccceeeeeecccccc----CC
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGN-----LNRELKVSPLVCNVRQLC----FK 381 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~-----~~~~~~i~~~~~Da~~l~----~~ 381 (494)
++..|||+|||-|+=+.--... .-..++|+||+...|+.|++..+...-. ....-...++.+|.+... +.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 6789999999988765433322 2368999999999999999877322100 001123456777776431 22
Q ss_pred C--CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHH
Q psy19 382 P--ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALH 441 (494)
Q Consensus 382 ~--~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~ 441 (494)
+ ..||+|=|---..-...+ .+-.+.||..+...|+|| |.++..++|...+.+.++
T Consensus 141 ~~~~~FDvVScQFalHY~Fes----e~~ar~~l~Nvs~~Lk~G-G~FIgT~~d~~~i~~~l~ 197 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFES----EEKARQFLKNVSSLLKPG-GYFIGTTPDSDEIVKRLR 197 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSS----HHHHHHHHHHHHHTEEEE-EEEEEEEE-HHHHHCCHH
T ss_pred ccCCCcceeehHHHHHHhcCC----HHHHHHHHHHHHHhcCCC-CEEEEEecCHHHHHHHHH
Confidence 2 489999985443333333 333567888999999999 999999999876644444
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00014 Score=75.11 Aligned_cols=149 Identities=19% Similarity=0.192 Sum_probs=95.3
Q ss_pred EEecCcceecccccccccccccccccccc-cchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeC
Q psy19 265 QIRYNEAYVGLPVTQTSLHRRNIVEFNIT-TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDI 343 (494)
Q Consensus 265 ~l~~~~~~l~l~lsg~sL~~Rgy~~~~~a-~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Di 343 (494)
.+.++.+.+.+.-...---++...|+.|+ -++-.|.-..+...+-.-..+|+|+++|||.=+|-.|..-+...++..||
T Consensus 5 ~v~EG~~~i~vP~~~~~~~~~~pVFYNP~m~~NRDlsV~~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDi 84 (380)
T COG1867 5 EVKEGSAKIYVPDPYKGGSKRAPVFYNPAMEFNRDLSVLVLKAFGKLLPKRVLDALSATGIRGIRYAVETGVVKVVLNDI 84 (380)
T ss_pred EeecCceEEEcCCCCCCCCCCCcceeCchhhhccchhHHHHHHhhccCCeEEeecccccchhHhhhhhhcCccEEEEccC
Confidence 34555555555443111123333455543 23444443333333211257899999999999998888755558999999
Q ss_pred CHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC-CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCC
Q psy19 344 NEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK-PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQ 422 (494)
Q Consensus 344 d~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~-~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg 422 (494)
+|.|++.++.|++.|.. ....+++.|+..+-.. ...||+|=.|| ||.-. -|+..+.+.++.+
T Consensus 85 sp~Avelik~Nv~~N~~-----~~~~v~n~DAN~lm~~~~~~fd~IDiDP-FGSPa-----------PFlDaA~~s~~~~ 147 (380)
T COG1867 85 SPKAVELIKENVRLNSG-----EDAEVINKDANALLHELHRAFDVIDIDP-FGSPA-----------PFLDAALRSVRRG 147 (380)
T ss_pred CHHHHHHHHHHHHhcCc-----ccceeecchHHHHHHhcCCCccEEecCC-CCCCc-----------hHHHHHHHHhhcC
Confidence 99999999999998832 1234666888777322 26899999995 77432 3555677777777
Q ss_pred CcEEEEEec
Q psy19 423 IGRAILLTS 431 (494)
Q Consensus 423 ~G~lvllt~ 431 (494)
|.+.+-..
T Consensus 148 -G~l~vTAT 155 (380)
T COG1867 148 -GLLCVTAT 155 (380)
T ss_pred -CEEEEEec
Confidence 77666433
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.88 E-value=5.3e-05 Score=79.73 Aligned_cols=108 Identities=18% Similarity=0.120 Sum_probs=75.9
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCC-CeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-CCCCCeeEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPH-TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-FKPACVDGI 388 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~-~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~~~~~~D~I 388 (494)
.+.++||+++|||-=+|-.+...++ ..|+..|+|+.+++..++|++.|++.. +.+.+.+.|+..+- .....||+|
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~---~~~~v~~~DAn~ll~~~~~~fD~I 125 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED---ERIEVSNMDANVLLYSRQERFDVI 125 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG---CCEEEEES-HHHHHCHSTT-EEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC---ceEEEehhhHHHHhhhccccCCEE
Confidence 4568999999999988888877433 579999999999999999999998632 26788899998763 234689999
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHH
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRK 434 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~ 434 (494)
=.|| ||.- .-||..+.+.++.| |.+.+-+.|..
T Consensus 126 DlDP-fGSp-----------~pfldsA~~~v~~g-Gll~vTaTD~a 158 (377)
T PF02005_consen 126 DLDP-FGSP-----------APFLDSALQAVKDG-GLLCVTATDTA 158 (377)
T ss_dssp EE---SS-------------HHHHHHHHHHEEEE-EEEEEEE--HH
T ss_pred EeCC-CCCc-----------cHhHHHHHHHhhcC-CEEEEeccccc
Confidence 9995 7743 25677788889988 87777665543
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00066 Score=66.71 Aligned_cols=134 Identities=13% Similarity=0.046 Sum_probs=72.9
Q ss_pred chHHHHHHHHHHhCC-CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 295 LKPTIAYNMVRLASP-IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 295 L~e~lAa~ll~la~~-~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
..-++.++++.+..- -.|..||=+|=+-- ++|.+|+..+...|+-+|||++.++..++.++..|+ .++..+.
T Consensus 27 ~eT~~~Ra~~~~~~gdL~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl------~i~~~~~ 99 (243)
T PF01861_consen 27 PETTLRRAALMAERGDLEGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL------PIEAVHY 99 (243)
T ss_dssp HHHHHHHHHHHHHTT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--------EEEE--
T ss_pred HHHHHHHHHHHHhcCcccCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC------ceEEEEe
Confidence 334444444444332 35778886653333 355666655668999999999999999999998875 2678889
Q ss_pred ccccccCC---CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE-ecCH------HHHHHHHHhc
Q psy19 374 NVRQLCFK---PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL-TSDR------KHLIQALHIT 443 (494)
Q Consensus 374 Da~~l~~~---~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll-t~~~------~~l~~~l~~~ 443 (494)
|++.- ++ .++||+++|||||... -..-|+......||..++..++- +... ..+++.+.++
T Consensus 100 DlR~~-LP~~~~~~fD~f~TDPPyT~~---------G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~ 169 (243)
T PF01861_consen 100 DLRDP-LPEELRGKFDVFFTDPPYTPE---------GLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEM 169 (243)
T ss_dssp -TTS----TTTSS-BSEEEE---SSHH---------HHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS
T ss_pred ccccc-CCHHHhcCCCEEEeCCCCCHH---------HHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHC
Confidence 99874 33 2689999999999742 14467778888998652344443 3321 2356666666
Q ss_pred cc
Q psy19 444 SA 445 (494)
Q Consensus 444 ~~ 445 (494)
|.
T Consensus 170 gl 171 (243)
T PF01861_consen 170 GL 171 (243)
T ss_dssp --
T ss_pred Cc
Confidence 63
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG3045|consensus | Back alignment and domain information |
|---|
Probab=97.85 E-value=7.3e-05 Score=73.63 Aligned_cols=148 Identities=20% Similarity=0.231 Sum_probs=93.2
Q ss_pred ccccccccc-ccccchHHHHHHHHHHhCCC-CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhcc
Q psy19 282 LHRRNIVEF-NITTLKPTIAYNMVRLASPI-PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNS 359 (494)
Q Consensus 282 L~~Rgy~~~-~~a~L~e~lAa~ll~la~~~-~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g 359 (494)
++++||+.. ..=|.+| ...++...... ...+|.|.|||-+-|+. .. ...|+..|+-..
T Consensus 151 lYH~gfr~QV~kWP~nP--ld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~a~------------- 210 (325)
T KOG3045|consen 151 LYHAGFRSQVKKWPENP--LDVIIRKIKRRPKNIVIADFGCGEAKIAS---SE--RHKVHSFDLVAV------------- 210 (325)
T ss_pred HHHHHHHHHHHhCCCCh--HHHHHHHHHhCcCceEEEecccchhhhhh---cc--ccceeeeeeecC-------------
Confidence 567788532 2223332 22344444333 45689999999998854 22 357888887431
Q ss_pred CCCCcccceeeeeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE--Eec---CHH
Q psy19 360 GNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL--LTS---DRK 434 (494)
Q Consensus 360 ~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl--lt~---~~~ 434 (494)
+-.++.+|++++|++++++|++|+=.- -+|+ + +..|+.++.|+|++| |.++| +.+ +..
T Consensus 211 -------~~~V~~cDm~~vPl~d~svDvaV~CLS---LMgt--n----~~df~kEa~RiLk~g-G~l~IAEv~SRf~dv~ 273 (325)
T KOG3045|consen 211 -------NERVIACDMRNVPLEDESVDVAVFCLS---LMGT--N----LADFIKEANRILKPG-GLLYIAEVKSRFSDVK 273 (325)
T ss_pred -------CCceeeccccCCcCccCcccEEEeeHh---hhcc--c----HHHHHHHHHHHhccC-ceEEEEehhhhcccHH
Confidence 125788999999999999999887321 1222 2 457888999999999 98887 333 455
Q ss_pred HHHHHHHhccccceeeeeEEEccCCceEEEEEEeeCC
Q psy19 435 HLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTA 471 (494)
Q Consensus 435 ~l~~~l~~~~~l~~~~~~~~v~~Ggl~~~i~v~~~~~ 471 (494)
.|.+++..+|+ ...+ ..+.| -.-.+|.|..+.
T Consensus 274 ~f~r~l~~lGF--~~~~-~d~~n--~~F~lfefkK~~ 305 (325)
T KOG3045|consen 274 GFVRALTKLGF--DVKH-KDVSN--KYFTLFEFKKTP 305 (325)
T ss_pred HHHHHHHHcCC--eeee-hhhhc--ceEEEEEEecCC
Confidence 68888888884 3332 22332 223455565554
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.4e-05 Score=77.48 Aligned_cols=111 Identities=21% Similarity=0.186 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccc
Q psy19 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVR 376 (494)
Q Consensus 297 e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~ 376 (494)
|.+-+.|+.-++..+-.++||+|||||-++...-.+ ..++.|+||+..|++.|.+.-- .+ .+.+.|+.
T Consensus 111 P~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg~--------YD--~L~~Aea~ 178 (287)
T COG4976 111 PELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKGL--------YD--TLYVAEAV 178 (287)
T ss_pred HHHHHHHHHhccCCccceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhccc--------hH--HHHHHHHH
Confidence 445556777676656679999999999988776555 4689999999999999986421 11 34555554
Q ss_pred cc-c-CCCCCeeEEEEc--CCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 377 QL-C-FKPACVDGIVTD--LPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 377 ~l-~-~~~~~~D~IVtN--PPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
.+ + .....||+|+.- .||- | ++. .++.-+...|+|| |.+.+.+
T Consensus 179 ~Fl~~~~~er~DLi~AaDVl~Yl---G---~Le----~~~~~aa~~L~~g-GlfaFSv 225 (287)
T COG4976 179 LFLEDLTQERFDLIVAADVLPYL---G---ALE----GLFAGAAGLLAPG-GLFAFSV 225 (287)
T ss_pred HHhhhccCCcccchhhhhHHHhh---c---chh----hHHHHHHHhcCCC-ceEEEEe
Confidence 33 1 334689988762 3442 2 223 3444688899998 8776644
|
|
| >KOG2915|consensus | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00027 Score=70.14 Aligned_cols=120 Identities=17% Similarity=0.164 Sum_probs=93.4
Q ss_pred HHHHHhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC
Q psy19 302 NMVRLASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380 (494)
Q Consensus 302 ~ll~la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~ 380 (494)
.++.+....||.+||+-|.|||+++...++. .|-.+++-.|++..-.+.|++-.+..|+ .+.+.+.+-|+...-|
T Consensus 96 ~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi----~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 96 MILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI----GDNVTVTHRDVCGSGF 171 (314)
T ss_pred HHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC----CcceEEEEeecccCCc
Confidence 4667778899999999999999999888765 4567899999999999999999987764 6778999999877644
Q ss_pred C--CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHH
Q psy19 381 K--PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQ 438 (494)
Q Consensus 381 ~--~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~ 438 (494)
. +..+|.|..|.|--. ..+..+..+||.+||+++-++|-.+.+.+
T Consensus 172 ~~ks~~aDaVFLDlPaPw-------------~AiPha~~~lk~~g~r~csFSPCIEQvqr 218 (314)
T KOG2915|consen 172 LIKSLKADAVFLDLPAPW-------------EAIPHAAKILKDEGGRLCSFSPCIEQVQR 218 (314)
T ss_pred cccccccceEEEcCCChh-------------hhhhhhHHHhhhcCceEEeccHHHHHHHH
Confidence 3 468999999998221 12224566888765799989986655544
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0005 Score=68.32 Aligned_cols=114 Identities=19% Similarity=0.155 Sum_probs=78.9
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc-cCCCC-CeeEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-CFKPA-CVDGI 388 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-~~~~~-~~D~I 388 (494)
....||=+|-|.|+++-++....+...+.++|||+.+++.|++-+...... ....+++++.+|+... .-... +||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~-~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG-LDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT-GGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc-cCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 457899999999999998876544568999999999999999876643221 1235788999999876 22224 89999
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
|.|.+-.. +.... -.-..|++.+.+.|+|+ |.+++-+
T Consensus 155 i~D~~dp~--~~~~~--l~t~ef~~~~~~~L~~~-Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPD--GPAPN--LFTREFYQLCKRRLKPD-GVLVLQA 191 (246)
T ss_dssp EEESSSTT--SCGGG--GSSHHHHHHHHHHEEEE-EEEEEEE
T ss_pred EEeCCCCC--CCccc--ccCHHHHHHHHhhcCCC-cEEEEEc
Confidence 99987421 11111 11235666899999999 9887743
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.3e-05 Score=73.78 Aligned_cols=70 Identities=17% Similarity=0.228 Sum_probs=61.7
Q ss_pred CEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEEc
Q psy19 313 DVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTD 391 (494)
Q Consensus 313 ~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtN 391 (494)
+.+.|+|+|||-++.-||.. .-+|++++.||...+.|.+|+...|. .+++++.+|+++..+ ...|+|||.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~-----~n~evv~gDA~~y~f--e~ADvvicE 103 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGD-----VNWEVVVGDARDYDF--ENADVVICE 103 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCC-----cceEEEecccccccc--cccceeHHH
Confidence 68999999999999999887 56899999999999999999987664 467899999999987 467999994
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=6.6e-05 Score=73.69 Aligned_cols=75 Identities=13% Similarity=0.106 Sum_probs=52.6
Q ss_pred eeeeeccccc--cCCCCCeeEEEEcCCCccccCC-------ccchHHHHHHHHHHHhhcccCCCcEEEEEecCH--HHHH
Q psy19 369 SPLVCNVRQL--CFKPACVDGIVTDLPFGKRVGS-------KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR--KHLI 437 (494)
Q Consensus 369 ~~~~~Da~~l--~~~~~~~D~IVtNPPYG~r~~~-------~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~--~~l~ 437 (494)
.++++|+.++ .++++++|+|||||||+..... .....+.+..++.++.|+|||| |.+++.+... ..+.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpg-g~l~if~~~~~~~~~~ 81 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKD-ALMVSFYGWNRVDRFM 81 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCC-CEEEEEeccccHHHHH
Confidence 5788998876 5778999999999999732110 1123456778889999999998 9888765532 2344
Q ss_pred HHHHhcc
Q psy19 438 QALHITS 444 (494)
Q Consensus 438 ~~l~~~~ 444 (494)
.++.+.|
T Consensus 82 ~al~~~G 88 (227)
T PRK13699 82 AAWKNAG 88 (227)
T ss_pred HHHHHCC
Confidence 4565555
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00026 Score=68.09 Aligned_cols=121 Identities=17% Similarity=0.203 Sum_probs=81.7
Q ss_pred HHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc
Q psy19 299 IAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378 (494)
Q Consensus 299 lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l 378 (494)
|++.|..... ..+..||+++||||.-.+..|..+|.....-+|.++......+..+...++. ++ ...+..|+..-
T Consensus 14 Il~vL~~~l~-~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~-Nv---~~P~~lDv~~~ 88 (204)
T PF06080_consen 14 ILEVLKQYLP-DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLP-NV---RPPLALDVSAP 88 (204)
T ss_pred HHHHHHHHhC-ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCc-cc---CCCeEeecCCC
Confidence 4444444332 2233699999999999999999999999999999999987877777766542 12 23445566554
Q ss_pred cC--------CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 379 CF--------KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 379 ~~--------~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+. ....||+|+|-=- ..+. -......+++.++++|++| |.++++-|
T Consensus 89 ~w~~~~~~~~~~~~~D~i~~~N~--lHI~----p~~~~~~lf~~a~~~L~~g-G~L~~YGP 142 (204)
T PF06080_consen 89 PWPWELPAPLSPESFDAIFCINM--LHIS----PWSAVEGLFAGAARLLKPG-GLLFLYGP 142 (204)
T ss_pred CCccccccccCCCCcceeeehhH--HHhc----CHHHHHHHHHHHHHhCCCC-CEEEEeCC
Confidence 22 1347999887210 0111 1334456777899999999 99888644
|
The function of this family is unknown. |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0002 Score=73.08 Aligned_cols=92 Identities=20% Similarity=0.286 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccc
Q psy19 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVR 376 (494)
Q Consensus 297 e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~ 376 (494)
|.|...++....++++..++|.--|.|+...+.+...+.++++|+|.|+.|++.|++++... .+++.+++.++.
T Consensus 6 PVll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~------~~r~~~~~~~F~ 79 (310)
T PF01795_consen 6 PVLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF------DDRFIFIHGNFS 79 (310)
T ss_dssp -TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC------CTTEEEEES-GG
T ss_pred cccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc------cceEEEEeccHH
Confidence 34445555566678899999999999999999888888899999999999999999888733 456788998887
Q ss_pred ccc-----C-CCCCeeEEEEcCCC
Q psy19 377 QLC-----F-KPACVDGIVTDLPF 394 (494)
Q Consensus 377 ~l~-----~-~~~~~D~IVtNPPY 394 (494)
++. . ....+|.|+.|.=+
T Consensus 80 ~l~~~l~~~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 80 NLDEYLKELNGINKVDGILFDLGV 103 (310)
T ss_dssp GHHHHHHHTTTTS-EEEEEEE-S-
T ss_pred HHHHHHHHccCCCccCEEEEcccc
Confidence 763 2 23489999998654
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00011 Score=74.93 Aligned_cols=92 Identities=15% Similarity=0.128 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccc
Q psy19 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVR 376 (494)
Q Consensus 297 e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~ 376 (494)
|.|...++....+++|..++|.-||.|+-+..++...+.+.++|+|.|+.|+..|++++... ..++.++++++.
T Consensus 6 pVll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~------~~R~~~i~~nF~ 79 (305)
T TIGR00006 6 SVLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF------EGRVVLIHDNFA 79 (305)
T ss_pred chhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc------CCcEEEEeCCHH
Confidence 45666677777788899999999999999998887765689999999999999999998743 246788999887
Q ss_pred ccc--C---CCCCeeEEEEcCCC
Q psy19 377 QLC--F---KPACVDGIVTDLPF 394 (494)
Q Consensus 377 ~l~--~---~~~~~D~IVtNPPY 394 (494)
++. + ...++|.|+.|.=.
T Consensus 80 ~l~~~l~~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 80 NFFEHLDELLVTKIDGILVDLGV 102 (305)
T ss_pred HHHHHHHhcCCCcccEEEEeccC
Confidence 763 1 22469999998654
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG1663|consensus | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00032 Score=68.17 Aligned_cols=114 Identities=12% Similarity=0.019 Sum_probs=85.4
Q ss_pred HHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc
Q psy19 299 IAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ 377 (494)
Q Consensus 299 lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~ 377 (494)
.+..+.++.+.-...+++|+|.-||.-++..|+..| +.+++++|+|+.+.+.+.+-.+.+|+ ..+|+++++++.+
T Consensus 61 ~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv----~~KI~~i~g~a~e 136 (237)
T KOG1663|consen 61 KGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV----DHKITFIEGPALE 136 (237)
T ss_pred HHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc----cceeeeeecchhh
Confidence 333344444444556899999888888887777655 68999999999999999999998875 5678999998765
Q ss_pred c------cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 378 L------CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 378 l------~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
. ....++||+++.|- -...|...+.++.+++|+| |.+++
T Consensus 137 sLd~l~~~~~~~tfDfaFvDa-----------dK~nY~~y~e~~l~Llr~G-Gvi~~ 181 (237)
T KOG1663|consen 137 SLDELLADGESGTFDFAFVDA-----------DKDNYSNYYERLLRLLRVG-GVIVV 181 (237)
T ss_pred hHHHHHhcCCCCceeEEEEcc-----------chHHHHHHHHHHHhhcccc-cEEEE
Confidence 3 12346899999862 1233667777899999999 87765
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00032 Score=71.02 Aligned_cols=125 Identities=15% Similarity=0.111 Sum_probs=88.9
Q ss_pred HHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-
Q psy19 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC- 379 (494)
Q Consensus 301 a~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~- 379 (494)
..+..++..++ ..||=+|-|.|+++-|++...+..+++.+|||+..++.|++-+........ ..+++++..|..++-
T Consensus 67 ~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~-dpRv~i~i~Dg~~~v~ 144 (282)
T COG0421 67 AHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGAD-DPRVEIIIDDGVEFLR 144 (282)
T ss_pred HhchhhhCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccC-CCceEEEeccHHHHHH
Confidence 33444555556 599999999999999998876667999999999999999998865432112 468899999998872
Q ss_pred CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 380 FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 380 ~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
-...+||+||+|---+. +....+ +-..|++.+.+.|+++ |.++.-+.+
T Consensus 145 ~~~~~fDvIi~D~tdp~--gp~~~L--ft~eFy~~~~~~L~~~-Gi~v~q~~~ 192 (282)
T COG0421 145 DCEEKFDVIIVDSTDPV--GPAEAL--FTEEFYEGCRRALKED-GIFVAQAGS 192 (282)
T ss_pred hCCCcCCEEEEcCCCCC--Cccccc--CCHHHHHHHHHhcCCC-cEEEEecCC
Confidence 11247999999854331 221111 1134556899999998 987776444
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=6.3e-05 Score=76.30 Aligned_cols=110 Identities=13% Similarity=0.109 Sum_probs=70.5
Q ss_pred CCEEEEEcCCcC----hHHHHHHhcC---C-CCeEEEEeCCHHHHHHHHHHHHh----cc--------------------
Q psy19 312 GDVFLDPMCGGG----TIPVECSLSY---P-HTFFVCGDINEKLVLKTQANVLH----NS-------------------- 359 (494)
Q Consensus 312 g~~VLDP~CGSG----tilIEAA~~~---~-~~~v~G~Did~~al~~Ar~Nl~~----~g-------------------- 359 (494)
.-+|+..||.|| ++++.+...+ + ...|+|+|||+.+++.|++..-. .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 368999999999 4444333321 1 36899999999999999875310 00
Q ss_pred --CCCCcccceeeeeeccccccCC-CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 360 --GNLNRELKVSPLVCNVRQLCFK-PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 360 --~~~~~~~~i~~~~~Da~~l~~~-~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
+...+...|.|.+.|+.+.+++ .+.||+|+|-==+. .. ..+.-..+++.+.+.|+|| |.+++
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvli-yF-----~~~~~~~vl~~l~~~L~pg-G~L~l 260 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMI-YF-----DKTTQERILRRFVPLLKPD-GLLFA 260 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHh-cC-----CHHHHHHHHHHHHHHhCCC-cEEEE
Confidence 1112335677888888875432 46899999921000 00 1123456777899999999 96543
|
|
| >KOG2361|consensus | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00012 Score=71.61 Aligned_cols=102 Identities=14% Similarity=0.139 Sum_probs=71.4
Q ss_pred EEEEEcCCcChHHHHHHhcCCC--CeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc----cCCCCCeeE
Q psy19 314 VFLDPMCGGGTIPVECSLSYPH--TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL----CFKPACVDG 387 (494)
Q Consensus 314 ~VLDP~CGSGtilIEAA~~~~~--~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l----~~~~~~~D~ 387 (494)
+||++|||.|..........+. ..+++.|.+|.|++..+.|..... .++....+|+..- ++..+++|+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e------~~~~afv~Dlt~~~~~~~~~~~svD~ 147 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE------SRVEAFVWDLTSPSLKEPPEEGSVDI 147 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch------hhhcccceeccchhccCCCCcCccce
Confidence 7999999999987777766555 899999999999999999987542 3444555665432 344578897
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
|++= |-...-. .+-....+..+.++|||| |.+++
T Consensus 148 it~I--FvLSAi~----pek~~~a~~nl~~llKPG-G~llf 181 (264)
T KOG2361|consen 148 ITLI--FVLSAIH----PEKMQSVIKNLRTLLKPG-GSLLF 181 (264)
T ss_pred EEEE--EEEeccC----hHHHHHHHHHHHHHhCCC-cEEEE
Confidence 7661 1111111 122446677899999999 87665
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00081 Score=63.98 Aligned_cols=100 Identities=15% Similarity=0.067 Sum_probs=77.6
Q ss_pred EEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEEcCC
Q psy19 314 VFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLP 393 (494)
Q Consensus 314 ~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPP 393 (494)
+++|+|+|.|--+|-.|..+|...++.+|...+-+.-.+.-+...|+ .++.++++.+.+ +.....||+|++
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L-----~nv~v~~~R~E~-~~~~~~fd~v~a--- 121 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL-----SNVEVINGRAEE-PEYRESFDVVTA--- 121 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT------SSEEEEES-HHH-TTTTT-EEEEEE---
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC-----CCEEEEEeeecc-cccCCCccEEEe---
Confidence 89999999999999999999999999999999988888887777765 247889998888 333478999999
Q ss_pred CccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 394 FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 394 YG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
|.-. .+ ..+++-+..+|++| |+++++-+.
T Consensus 122 ---RAv~--~l----~~l~~~~~~~l~~~-G~~l~~KG~ 150 (184)
T PF02527_consen 122 ---RAVA--PL----DKLLELARPLLKPG-GRLLAYKGP 150 (184)
T ss_dssp ---ESSS--SH----HHHHHHHGGGEEEE-EEEEEEESS
T ss_pred ---ehhc--CH----HHHHHHHHHhcCCC-CEEEEEcCC
Confidence 5433 23 34555788899998 999888764
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG1661|consensus | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00037 Score=66.89 Aligned_cols=108 Identities=19% Similarity=0.145 Sum_probs=76.0
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCC----C-cccceeeeeeccccccCC
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNL----N-RELKVSPLVCNVRQLCFK 381 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~----~-~~~~i~~~~~Da~~l~~~ 381 (494)
.+||...||.|.|||.+...+|++- ++....|+|.-++.|+.+++|+...-... . -...+.+..+|.+..-..
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 5799999999999999988888552 34445999999999999999997532100 0 013456778898887555
Q ss_pred CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 382 PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 382 ~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
.+.||.|-+- .+. .++- +++...|++| |++++-..
T Consensus 160 ~a~YDaIhvG------Aaa----~~~p----q~l~dqL~~g-Grllip~~ 194 (237)
T KOG1661|consen 160 QAPYDAIHVG------AAA----SELP----QELLDQLKPG-GRLLIPVG 194 (237)
T ss_pred cCCcceEEEc------cCc----cccH----HHHHHhhccC-CeEEEeec
Confidence 5789998772 221 1222 3577789998 88777544
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00021 Score=68.69 Aligned_cols=112 Identities=13% Similarity=-0.020 Sum_probs=62.7
Q ss_pred CCCEEEEEcCCcCh----HHHHHHhc----CC-CCeEEEEeCCHHHHHHHHHHHH--------------hc-----c---
Q psy19 311 PGDVFLDPMCGGGT----IPVECSLS----YP-HTFFVCGDINEKLVLKTQANVL--------------HN-----S--- 359 (494)
Q Consensus 311 ~g~~VLDP~CGSGt----ilIEAA~~----~~-~~~v~G~Did~~al~~Ar~Nl~--------------~~-----g--- 359 (494)
+.-+|+..||+||- +++.+... .+ ...|+|.|||+.+++.|++-.= .. +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45789999999994 33333331 11 3689999999999999985220 00 0
Q ss_pred -CCCCcccceeeeeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 360 -GNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 360 -~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+...+...|.|.+.|..+.+...+.||+|+| |-----=..+.-..+++.+.+.|+|| |.+++=
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~C------RNVlIYF~~~~~~~vl~~l~~~L~pg-G~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFC------RNVLIYFDPETQQRVLRRLHRSLKPG-GYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-------SSGGGS-HHHHHHHHHHHGGGEEEE-EEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEe------cCEEEEeCHHHHHHHHHHHHHHcCCC-CEEEEe
Confidence 0001224678888898883333478999999 21111111334567788899999999 876554
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >KOG1122|consensus | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0011 Score=69.53 Aligned_cols=118 Identities=23% Similarity=0.262 Sum_probs=87.4
Q ss_pred hCCCCCCEEEEEcCCcCh--HHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc---CC
Q psy19 307 ASPIPGDVFLDPMCGGGT--IPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC---FK 381 (494)
Q Consensus 307 a~~~~g~~VLDP~CGSGt--ilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~---~~ 381 (494)
..+++|.+|||+||--|+ .-|+ |+|.....|++.|.+..-+...+.|+...|++ ...+.+.|...+| ++
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IA-alMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-----ntiv~n~D~~ef~~~~~~ 310 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIA-ALMKNTGVIFANDSNENRLKSLKANLHRLGVT-----NTIVSNYDGREFPEKEFP 310 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHH-HHHcCCceEEecccchHHHHHHHHHHHHhCCC-----ceEEEccCcccccccccC
Confidence 468899999999998774 3444 34433468999999999999999999999863 2236667877654 33
Q ss_pred CCCeeEEEEcCCC-ccccCCc-------------cchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 382 PACVDGIVTDLPF-GKRVGSK-------------SNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 382 ~~~~D~IVtNPPY-G~r~~~~-------------~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
++||-|+.|-|- |..+... .....+-+++|..+...+++| |.+|.-|+.
T Consensus 311 -~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~G-GvLVYSTCS 373 (460)
T KOG1122|consen 311 -GSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAG-GVLVYSTCS 373 (460)
T ss_pred -cccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCC-cEEEEEeee
Confidence 389999999994 3222211 123456778888999999999 999998773
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0028 Score=63.94 Aligned_cols=126 Identities=16% Similarity=0.052 Sum_probs=91.0
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCC--CeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPH--TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~--~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
.-+.+.|..++..+..-...-+|+|+.||.|.-.+++....|. ..|.-.|.++..|+..++-++..|+ .+.+.|
T Consensus 117 ~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL----~~i~~f 192 (311)
T PF12147_consen 117 VHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL----EDIARF 192 (311)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC----ccceEE
Confidence 3477777777777765456678999999999999999988775 6888999999999999999998875 455689
Q ss_pred eeecccccc-CC--CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 371 LVCNVRQLC-FK--PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 371 ~~~Da~~l~-~~--~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
.++|+++.. +. .-.++++|.-==|. .-.+ .++....+..+.+.+.|| |.++.
T Consensus 193 ~~~dAfd~~~l~~l~p~P~l~iVsGL~E----lF~D-n~lv~~sl~gl~~al~pg-G~lIy 247 (311)
T PF12147_consen 193 EQGDAFDRDSLAALDPAPTLAIVSGLYE----LFPD-NDLVRRSLAGLARALEPG-GYLIY 247 (311)
T ss_pred EecCCCCHhHhhccCCCCCEEEEecchh----hCCc-HHHHHHHHHHHHHHhCCC-cEEEE
Confidence 999998752 11 12456555411111 1112 234556677899999998 87554
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0014 Score=66.22 Aligned_cols=96 Identities=17% Similarity=0.184 Sum_probs=64.0
Q ss_pred EEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC--CCCeeEEEEc
Q psy19 314 VFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK--PACVDGIVTD 391 (494)
Q Consensus 314 ~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~--~~~~D~IVtN 391 (494)
+++|+|||.|++...+.... ...++++|+++.+++..+.|... .++++|+.++... ...+|+|+..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~~~-----------~~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANFPN-----------KLIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhCCC-----------CCccCccccCchhhcCCCCCEEEeC
Confidence 58999999999976665542 23578899999999999998752 1455677666322 2579999999
Q ss_pred CCC------ccccCCccchHHHHHHHHHHHhhcccCC
Q psy19 392 LPF------GKRVGSKSNNFLLYRLFLIEIGKIVRPQ 422 (494)
Q Consensus 392 PPY------G~r~~~~~~~~~ly~~fL~~l~rvLkpg 422 (494)
||. |.+.+.......|+..+++- .+.++|.
T Consensus 70 pPCq~fS~ag~~~~~~d~r~~L~~~~~~~-i~~~~P~ 105 (275)
T cd00315 70 FPCQPFSIAGKRKGFEDTRGTLFFEIIRI-LKEKKPK 105 (275)
T ss_pred CCChhhhHHhhcCCCCCchHHHHHHHHHH-HHhcCCC
Confidence 997 22222222233466666643 3445776
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >KOG1975|consensus | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0017 Score=65.98 Aligned_cols=139 Identities=18% Similarity=0.162 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccC-CCCcccceeeeeecc
Q psy19 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSG-NLNRELKVSPLVCNV 375 (494)
Q Consensus 297 e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~-~~~~~~~i~~~~~Da 375 (494)
--+-..|+++.. ++++.++|+|||-|+=++---... -..++|+||..-.|+.|+...+.... .....-.+.|+.+|.
T Consensus 104 NwIKs~LI~~y~-~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc 181 (389)
T KOG1975|consen 104 NWIKSVLINLYT-KRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADC 181 (389)
T ss_pred HHHHHHHHHHHh-ccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEecc
Confidence 334445555544 367789999999998876432221 14789999999999999876653211 001112357888887
Q ss_pred ccc------cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHh
Q psy19 376 RQL------CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHI 442 (494)
Q Consensus 376 ~~l------~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~ 442 (494)
+.. ++++.+||+|-|---+.-...+.+ -.+.+|+.+++.|+|| |.++--+|+...+.+.++.
T Consensus 182 ~~~~l~d~~e~~dp~fDivScQF~~HYaFetee----~ar~~l~Nva~~LkpG-G~FIgTiPdsd~Ii~rlr~ 249 (389)
T KOG1975|consen 182 FKERLMDLLEFKDPRFDIVSCQFAFHYAFETEE----SARIALRNVAKCLKPG-GVFIGTIPDSDVIIKRLRA 249 (389)
T ss_pred chhHHHHhccCCCCCcceeeeeeeEeeeeccHH----HHHHHHHHHHhhcCCC-cEEEEecCcHHHHHHHHHh
Confidence 653 334445999988655444444332 2456778899999999 9988889998766665553
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0015 Score=65.58 Aligned_cols=114 Identities=14% Similarity=0.018 Sum_probs=72.2
Q ss_pred CCEEEEEcCCcC----hHHHHHHhcCC-----CCeEEEEeCCHHHHHHHHHHHHh-----ccC-----------------
Q psy19 312 GDVFLDPMCGGG----TIPVECSLSYP-----HTFFVCGDINEKLVLKTQANVLH-----NSG----------------- 360 (494)
Q Consensus 312 g~~VLDP~CGSG----tilIEAA~~~~-----~~~v~G~Did~~al~~Ar~Nl~~-----~g~----------------- 360 (494)
.-+|+-++|+|| ++++.+...++ ...|+|+|||..+++.|+.-.=. .++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 568999999999 45554444453 47899999999999999842211 111
Q ss_pred --CCCcccceeeeeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 361 --NLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 361 --~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
...+...|.|.+.|...-++..+.||+|+| |-------...-.+++..++..|+|| |.+++=.++
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfC------RNVLIYFd~~~q~~il~~f~~~L~~g-G~LflG~sE 243 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFC------RNVLIYFDEETQERILRRFADSLKPG-GLLFLGHSE 243 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEE------cceEEeeCHHHHHHHHHHHHHHhCCC-CEEEEccCc
Confidence 011223566777777665533467999999 31100001233446666899999999 987664443
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00033 Score=70.94 Aligned_cols=64 Identities=14% Similarity=0.131 Sum_probs=46.2
Q ss_pred eeeeeeccccc--cCCCCCeeEEEEcCCCccccC--Cc------cchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 368 VSPLVCNVRQL--CFKPACVDGIVTDLPFGKRVG--SK------SNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 368 i~~~~~Da~~l--~~~~~~~D~IVtNPPYG~r~~--~~------~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
..++++|+.+. .+++++||+||+||||+.... .. .+-......++.++.++|||+ |.+++.+..
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~-G~i~i~~~~ 82 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQ-GTMYIMNST 82 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCC-cEEEEEcCc
Confidence 36889999885 356689999999999975211 11 112233457888999999999 999887654
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0015 Score=64.32 Aligned_cols=40 Identities=10% Similarity=-0.009 Sum_probs=34.0
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHH
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLK 350 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~ 350 (494)
..+.++||.|||+|.|...++... ...++|+|+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHH
Confidence 467899999999999999888763 3589999999987765
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00068 Score=64.48 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=57.8
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
-.|.+|||.|+|||-.+|.+|+... ..++..|++|..+..++.|++.||+ .+.+...|..- .+..+|+|+
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~angv------~i~~~~~d~~g---~~~~~Dl~L 147 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANGV------SILFTHADLIG---SPPAFDLLL 147 (218)
T ss_pred cccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhccc------eeEEeeccccC---CCcceeEEE
Confidence 3688999999999999999988742 5788999999999999999999886 24677777654 235799876
Q ss_pred E
Q psy19 390 T 390 (494)
Q Consensus 390 t 390 (494)
.
T Consensus 148 a 148 (218)
T COG3897 148 A 148 (218)
T ss_pred e
Confidence 5
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0071 Score=54.93 Aligned_cols=89 Identities=18% Similarity=0.135 Sum_probs=56.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc--CCCCCeeEEEEcCCCccccCCcc--chHHHHHHHH
Q psy19 337 FFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC--FKPACVDGIVTDLPFGKRVGSKS--NNFLLYRLFL 412 (494)
Q Consensus 337 ~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~--~~~~~~D~IVtNPPYG~r~~~~~--~~~~ly~~fL 412 (494)
+|+|+||.++|++.+++.++..++ ..++.+++.+=..+. .+.+.+|++|.|.=|--. +++. ...+---..+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~----~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPg-gDk~i~T~~~TTl~Al 75 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL----EDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPG-GDKSITTKPETTLKAL 75 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-----GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CT-S-TTSB--HHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC----CCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCC-CCCCCCcCcHHHHHHH
Confidence 589999999999999999998765 456788776655542 222489999999877221 1110 1122223466
Q ss_pred HHHhhcccCCCcEEEEEec
Q psy19 413 IEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 413 ~~l~rvLkpg~G~lvllt~ 431 (494)
+.+.++|+|| |.+.+++.
T Consensus 76 ~~al~lL~~g-G~i~iv~Y 93 (140)
T PF06962_consen 76 EAALELLKPG-GIITIVVY 93 (140)
T ss_dssp HHHHHHEEEE-EEEEEEE-
T ss_pred HHHHHhhccC-CEEEEEEe
Confidence 7799999999 98877543
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.003 Score=63.55 Aligned_cols=104 Identities=17% Similarity=0.121 Sum_probs=72.2
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhcc----C------------------------C-
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNS----G------------------------N- 361 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g----~------------------------~- 361 (494)
...+||-||||.|.++.|.|.. +-.+.|.|.+--|+-...--+.... . .
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4578999999999999999998 7789999999999776655333200 0 0
Q ss_pred ------CCcccceeeeeeccccccCCC---CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcE
Q psy19 362 ------LNRELKVSPLVCNVRQLCFKP---ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGR 425 (494)
Q Consensus 362 ------~~~~~~i~~~~~Da~~l~~~~---~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~ 425 (494)
......+.+..+|+.++...+ +.+|.|||. |. +.+..++ + ..++.+.++|||| |.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~--FF--IDTA~Ni---~-~Yi~tI~~lLkpg-G~ 197 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC--FF--IDTAENI---I-EYIETIEHLLKPG-GY 197 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE--EE--eechHHH---H-HHHHHHHHHhccC-CE
Confidence 001124566778888874433 689999996 43 3333333 2 4566899999999 73
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0012 Score=59.10 Aligned_cols=59 Identities=15% Similarity=-0.029 Sum_probs=49.1
Q ss_pred EEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc
Q psy19 314 VFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ 377 (494)
Q Consensus 314 ~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~ 377 (494)
+++|.|||.|.+++.++..++..+++++|.++.+++.+++|+..+++ .++.+.+..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~-----~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL-----PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC-----CcEEEEEeeeeC
Confidence 48999999999999999888777999999999999999999998764 125666655543
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0016 Score=65.70 Aligned_cols=67 Identities=21% Similarity=0.327 Sum_probs=58.5
Q ss_pred ccccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhc
Q psy19 289 EFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN 358 (494)
Q Consensus 289 ~~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~ 358 (494)
..+|+.....+...++.+ .-.+++.|+|||+||||.++.|... +..++|+|+++.-++.+..-+...
T Consensus 201 ~~hp~~~P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~--~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 201 KLHPAQKPLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNL--GRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred cCCCCCChHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHc--CCceEEEecCHHHHHHHHHHHHhh
Confidence 346888899999998888 5568999999999999999998877 678999999999999999888753
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0015 Score=61.36 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=62.2
Q ss_pred CCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc--------CC
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC--------FK 381 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~--------~~ 381 (494)
++.++||+||+.|++.-.++... +...++|+|+.+.. .. ..+..+++|+.+.. +.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~---------------~~-~~~~~i~~d~~~~~~~~~i~~~~~ 86 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD---------------PL-QNVSFIQGDITNPENIKDIRKLLP 86 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG---------------S--TTEEBTTGGGEEEEHSHHGGGSHG
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc---------------cc-cceeeeecccchhhHHHhhhhhcc
Confidence 45899999999999998877764 35799999998861 00 12345556654321 11
Q ss_pred --CCCeeEEEEcC-C-C-ccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 382 --PACVDGIVTDL-P-F-GKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 382 --~~~~D~IVtNP-P-Y-G~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
...+|+|++|. | . |.+.........+....+.-+...|+|| |.+++-+
T Consensus 87 ~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~g-G~~v~K~ 139 (181)
T PF01728_consen 87 ESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPG-GTFVIKV 139 (181)
T ss_dssp TTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTT-EEEEEEE
T ss_pred ccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCC-CEEEEEe
Confidence 25899999997 2 1 1111112222344444555677889999 9887744
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.011 Score=56.99 Aligned_cols=117 Identities=21% Similarity=0.191 Sum_probs=79.5
Q ss_pred chHHHHHHHHHHhC----CCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCccccee
Q psy19 295 LKPTIAYNMVRLAS----PIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVS 369 (494)
Q Consensus 295 L~e~lAa~ll~la~----~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~ 369 (494)
.+..-|+-|+++.. .+++..|+|+||--|+-+-.|+... +...|+|+|+.|-. .+ ..+.
T Consensus 25 yRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~---------------~~-~~V~ 88 (205)
T COG0293 25 YRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK---------------PI-PGVI 88 (205)
T ss_pred ccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc---------------cC-CCce
Confidence 34455666666653 3688999999999999999888763 33559999999843 22 2368
Q ss_pred eeeecccccc--------CCCCCeeEEEEcCCC---ccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 370 PLVCNVRQLC--------FKPACVDGIVTDLPF---GKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 370 ~~~~Da~~l~--------~~~~~~D~IVtNPPY---G~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
++++|++.-+ +....+|+|++|+-= |.+..++.....|-...+.-+..+|+|| |.+++
T Consensus 89 ~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~-G~fv~ 157 (205)
T COG0293 89 FLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPG-GSFVA 157 (205)
T ss_pred EEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCC-CeEEE
Confidence 9999987653 223357999998632 2222222334455556677788899999 87775
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0043 Score=64.06 Aligned_cols=163 Identities=15% Similarity=0.110 Sum_probs=104.0
Q ss_pred CCCCEEEEEEEecCcceecccccccccccc-cccccccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC
Q psy19 256 DDYDIDINLQIRYNEAYVGLPVTQTSLHRR-NIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP 334 (494)
Q Consensus 256 ~~pdi~i~v~l~~~~~~l~l~lsg~sL~~R-gy~~~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~ 334 (494)
..|=.+|.+.-.++...++++-.= -+..| .||+ + |++.. ..+...+.-.+||=+|-|.|--+-|..+ +|
T Consensus 242 qspYQ~iVvTr~g~d~rLYldG~L-QfsTrDe~RY-h-----EsLV~--pals~~~~a~~vLvlGGGDGLAlRellk-yP 311 (508)
T COG4262 242 QSPYQRIVVTRRGDDLRLYLDGGL-QFSTRDEYRY-H-----ESLVY--PALSSVRGARSVLVLGGGDGLALRELLK-YP 311 (508)
T ss_pred cCccceEEEEEecCceEEEEcCce-eeeechhhhh-h-----heeee--cccccccccceEEEEcCCchHHHHHHHh-CC
Confidence 345566777766777776665321 11111 2221 1 11110 0122334567899999999987777654 56
Q ss_pred -CCeEEEEeCCHHHHHHHHHHHHhccCCCC--cccceeeeeecccccc-CCCCCeeEEEEcCCCccccCCccchHHHHH-
Q psy19 335 -HTFFVCGDINEKLVLKTQANVLHNSGNLN--RELKVSPLVCNVRQLC-FKPACVDGIVTDLPFGKRVGSKSNNFLLYR- 409 (494)
Q Consensus 335 -~~~v~G~Did~~al~~Ar~Nl~~~g~~~~--~~~~i~~~~~Da~~l~-~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~- 409 (494)
-.+|+-+|+||+|++.++.|.....+|.+ ...++.++..|++++- -....||.||.|.|=-.. ..+..+|.
T Consensus 312 ~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~t----ps~~rlYS~ 387 (508)
T COG4262 312 QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPST----PSIGRLYSV 387 (508)
T ss_pred CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCC----cchhhhhhH
Confidence 46899999999999999977654433332 2457889999998872 223589999999883321 22344554
Q ss_pred HHHHHHhhcccCCCcEEEEEecCH
Q psy19 410 LFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 410 ~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
.|...+.+.|+++ |.+++-.++.
T Consensus 388 eFY~ll~~~l~e~-Gl~VvQags~ 410 (508)
T COG4262 388 EFYRLLSRHLAET-GLMVVQAGSP 410 (508)
T ss_pred HHHHHHHHhcCcC-ceEEEecCCC
Confidence 3556788999998 9988866554
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0015 Score=63.51 Aligned_cols=82 Identities=20% Similarity=0.159 Sum_probs=54.8
Q ss_pred CCCEEEEEcCCcChH-HHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhc-cCCCCcccceeeee-eccccc-c---CCCC
Q psy19 311 PGDVFLDPMCGGGTI-PVECSLSYPHTFFVCGDINEKLVLKTQANVLHN-SGNLNRELKVSPLV-CNVRQL-C---FKPA 383 (494)
Q Consensus 311 ~g~~VLDP~CGSGti-lIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~-g~~~~~~~~i~~~~-~Da~~l-~---~~~~ 383 (494)
++.++||+|.|.-.| ++-...++ +-+.+|.|||+.+++.|+.++..| ++ ...+.+.. .|-..+ + -..+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l----~~~I~lr~qk~~~~if~giig~nE 152 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGL----ERAIRLRRQKDSDAIFNGIIGKNE 152 (292)
T ss_pred CceEEEeeccCcccccccccceee-cceeecCccCHHHHHHHHHHHHcCcch----hhheeEEeccCccccccccccccc
Confidence 567899998887665 22222222 457899999999999999999987 33 33334332 333322 1 1246
Q ss_pred CeeEEEEcCCCccc
Q psy19 384 CVDGIVTDLPFGKR 397 (494)
Q Consensus 384 ~~D~IVtNPPYG~r 397 (494)
.||+.+|||||...
T Consensus 153 ~yd~tlCNPPFh~s 166 (292)
T COG3129 153 RYDATLCNPPFHDS 166 (292)
T ss_pred eeeeEecCCCcchh
Confidence 89999999999543
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0034 Score=56.84 Aligned_cols=65 Identities=20% Similarity=0.147 Sum_probs=50.1
Q ss_pred CCCCEEEEEcCCcChHHHHHHh-----cCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc
Q psy19 310 IPGDVFLDPMCGGGTIPVECSL-----SYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ 377 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~-----~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~ 377 (494)
.+...|+|.|||-|.++..++. . ++..|+|+|.++..++.|....+..+. .....+.+..++...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~ 93 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGS--DLEKRLSFIQGDIAD 93 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcc--hhhccchhhccchhh
Confidence 6778999999999999998888 4 578999999999999999998887652 122334455554443
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.028 Score=54.60 Aligned_cols=148 Identities=16% Similarity=0.173 Sum_probs=102.5
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC-CCCeeEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK-PACVDGI 388 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~-~~~~D~I 388 (494)
+.+..+.|+||=-|.+++.+....+...++++|+++..++.|.+|+..+++ ..+++...+|-... +. +..+|+|
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l----~~~i~vr~~dgl~~-l~~~d~~d~i 89 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL----SERIDVRLGDGLAV-LELEDEIDVI 89 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC----cceEEEeccCCccc-cCccCCcCEE
Confidence 356669999999999999999988888999999999999999999998865 56778888887443 32 2367866
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC--HHHHHHHHHhccccceeeeeEEEccCCceEEEEE
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD--RKHLIQALHITSALWKCRKQIKINMSGMKSFVFI 466 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~--~~~l~~~l~~~~~l~~~~~~~~v~~Ggl~~~i~v 466 (494)
+. -.+| ..+...+|++..+.|+.- -+ .++.|+ ...+++-+...+ |.......+.-.+.--.|.+
T Consensus 90 vI-----AGMG-----G~lI~~ILee~~~~l~~~-~r-lILQPn~~~~~LR~~L~~~~--~~I~~E~ileE~~kiYEIlv 155 (226)
T COG2384 90 VI-----AGMG-----GTLIREILEEGKEKLKGV-ER-LILQPNIHTYELREWLSANS--YEIKAETILEEDGKIYEILV 155 (226)
T ss_pred EE-----eCCc-----HHHHHHHHHHhhhhhcCc-ce-EEECCCCCHHHHHHHHHhCC--ceeeeeeeecccCeEEEEEE
Confidence 54 0222 345777888888888632 23 445553 344677777666 55555554444344346667
Q ss_pred EeeCCCCCCC
Q psy19 467 LNRTADLFDY 476 (494)
Q Consensus 467 ~~~~~~~~d~ 476 (494)
.++...++..
T Consensus 156 ~e~~~~~~~~ 165 (226)
T COG2384 156 VEKSSKPALY 165 (226)
T ss_pred EecCCchhhh
Confidence 7776644444
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0018 Score=63.60 Aligned_cols=96 Identities=11% Similarity=0.035 Sum_probs=55.9
Q ss_pred HHHHhCCCCCC--EEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCc----ccceeeeeeccc
Q psy19 303 MVRLASPIPGD--VFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNR----ELKVSPLVCNVR 376 (494)
Q Consensus 303 ll~la~~~~g~--~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~----~~~i~~~~~Da~ 376 (494)
|+..++.+++. +|||.-||-|.=++-+|.. |++|+|+|.+|-+..+.+.-++.+.-.... ..+++++++|+.
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~ 142 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDAL 142 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CC
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHH
Confidence 44456666664 8999999999988887766 789999999998877766555443211111 247889999988
Q ss_pred cc-cCCCCCeeEEEEcCCCccccCC
Q psy19 377 QL-CFKPACVDGIVTDLPFGKRVGS 400 (494)
Q Consensus 377 ~l-~~~~~~~D~IVtNPPYG~r~~~ 400 (494)
++ ..++.+||+|..||-|..+...
T Consensus 143 ~~L~~~~~s~DVVY~DPMFp~~~ks 167 (234)
T PF04445_consen 143 EYLRQPDNSFDVVYFDPMFPERKKS 167 (234)
T ss_dssp CHCCCHSS--SEEEE--S-----TT
T ss_pred HHHhhcCCCCCEEEECCCCCCcccc
Confidence 75 4335799999999999876543
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.013 Score=58.72 Aligned_cols=128 Identities=9% Similarity=-0.068 Sum_probs=80.5
Q ss_pred HhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCe
Q psy19 306 LASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACV 385 (494)
Q Consensus 306 la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~ 385 (494)
++.+. ..+||=+|-|-|..+-|.++ ++. +|..+|||+++++.+++-+-..... --..+++++.. +. ....++|
T Consensus 68 ~~h~~-pk~VLIiGGGDGg~~REvLk-h~~-~v~mVeID~~Vv~~~k~~lP~~~~~-~~DpRv~l~~~-~~--~~~~~~f 140 (262)
T PRK00536 68 CTKKE-LKEVLIVDGFDLELAHQLFK-YDT-HVDFVQADEKILDSFISFFPHFHEV-KNNKNFTHAKQ-LL--DLDIKKY 140 (262)
T ss_pred hhCCC-CCeEEEEcCCchHHHHHHHC-cCC-eeEEEECCHHHHHHHHHHCHHHHHh-hcCCCEEEeeh-hh--hccCCcC
Confidence 34443 46899999999999999876 454 9999999999999999944332110 11245555541 21 1123689
Q ss_pred eEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC----HHHHHHHHHhccccceeeeeEE
Q psy19 386 DGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD----RKHLIQALHITSALWKCRKQIK 454 (494)
Q Consensus 386 D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~----~~~l~~~l~~~~~l~~~~~~~~ 454 (494)
|+||+|-.|. .+.| +.+.+.|+|+ |.++.=+.+ ...+.......+..+.....+.
T Consensus 141 DVIIvDs~~~---------~~fy----~~~~~~L~~~-Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~v~~y~ 199 (262)
T PRK00536 141 DLIICLQEPD---------IHKI----DGLKRMLKED-GVFISVAKHPLLEHVSMQNALKNMGDFFSIAMPFV 199 (262)
T ss_pred CEEEEcCCCC---------hHHH----HHHHHhcCCC-cEEEECCCCcccCHHHHHHHHHHHHhhCCceEEEE
Confidence 9999995432 2334 4799999999 988774332 3334444444333334344443
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.017 Score=56.32 Aligned_cols=120 Identities=15% Similarity=0.201 Sum_probs=78.6
Q ss_pred ccchHHHHHHHHHHh---CCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccce
Q psy19 293 TTLKPTIAYNMVRLA---SPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKV 368 (494)
Q Consensus 293 a~L~e~lAa~ll~la---~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i 368 (494)
.|-+..|||+++.-. ..++|.+||-+|+.|||..--.+-. .+...|+|++.++...+..-.-++. ..++
T Consensus 52 ~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-------R~NI 124 (229)
T PF01269_consen 52 NPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-------RPNI 124 (229)
T ss_dssp -TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-------STTE
T ss_pred CchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-------CCce
Confidence 468899999997643 3578999999999999998877765 4467999999999887666544442 2345
Q ss_pred eeeeecccccc-C--CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 369 SPLVCNVRQLC-F--KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 369 ~~~~~Da~~l~-~--~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
-.+-.|++... . --+.+|+|++|-. ..... +-++..+..+||+| |.+++..
T Consensus 125 iPIl~DAr~P~~Y~~lv~~VDvI~~DVa------Qp~Qa----~I~~~Na~~fLk~g-G~~~i~i 178 (229)
T PF01269_consen 125 IPILEDARHPEKYRMLVEMVDVIFQDVA------QPDQA----RIAALNARHFLKPG-GHLIISI 178 (229)
T ss_dssp EEEES-TTSGGGGTTTS--EEEEEEE-S------STTHH----HHHHHHHHHHEEEE-EEEEEEE
T ss_pred eeeeccCCChHHhhcccccccEEEecCC------ChHHH----HHHHHHHHhhccCC-cEEEEEE
Confidence 56788998652 1 1258999999853 22221 23344677799999 8877653
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0011 Score=57.33 Aligned_cols=48 Identities=19% Similarity=0.238 Sum_probs=37.8
Q ss_pred CeeEEEEcCCCccccCCcc------chHHHHHHHHHHHhhcccCCCcEEEEEecCHH
Q psy19 384 CVDGIVTDLPFGKRVGSKS------NNFLLYRLFLIEIGKIVRPQIGRAILLTSDRK 434 (494)
Q Consensus 384 ~~D~IVtNPPYG~r~~~~~------~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~ 434 (494)
.||+||.||||+....... ...++|.-|++...++| + |.+.+++|+.-
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~~~~~dlY~~Fie~~~~ll--~-G~~~~I~P~~~ 55 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKKKKKSDLYILFIEKSLNLL--N-GYLSFITPNSF 55 (106)
T ss_pred CcCEEEECCCChhhccccchhhcccccCcHHHHHHHHHHHHh--C-CeEEEEeChHH
Confidence 5899999999986542211 23568999999999988 7 99999999864
|
The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.017 Score=48.72 Aligned_cols=102 Identities=21% Similarity=0.202 Sum_probs=65.6
Q ss_pred EEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc--ccCCC-CCeeEEEE
Q psy19 315 FLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ--LCFKP-ACVDGIVT 390 (494)
Q Consensus 315 VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~--l~~~~-~~~D~IVt 390 (494)
++|.+||+|... .++...+ ...++|+|+++.++..++......+. . .+.+...|... +++.. ..+|++..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~d~~~~ 125 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL----G-LVDFVVADALGGVLPFEDSASFDLVIS 125 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC----C-ceEEEEeccccCCCCCCCCCceeEEee
Confidence 999999999865 2222211 14788999999999996555432111 0 04677777765 56655 37999855
Q ss_pred cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
...+... . ....+.++.++|+|+ |.+.+....
T Consensus 126 ~~~~~~~-----~----~~~~~~~~~~~l~~~-g~~~~~~~~ 157 (257)
T COG0500 126 LLVLHLL-----P----PAKALRELLRVLKPG-GRLVLSDLL 157 (257)
T ss_pred eeehhcC-----C----HHHHHHHHHHhcCCC-cEEEEEecc
Confidence 3332211 0 235566799999998 988776554
|
|
| >KOG2198|consensus | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.013 Score=60.90 Aligned_cols=131 Identities=16% Similarity=0.140 Sum_probs=85.6
Q ss_pred hCCCCCCEEEEEcCCcChH---HHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC--
Q psy19 307 ASPIPGDVFLDPMCGGGTI---PVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF-- 380 (494)
Q Consensus 307 a~~~~g~~VLDP~CGSGti---lIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~-- 380 (494)
.++++|++|||.|+--|+= ++|++.. |....+++-|.|+.-+...+.-+.... ...+.+.+.|+...|-
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-----~~~~~v~~~~~~~~p~~~ 225 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-----SPNLLVTNHDASLFPNIY 225 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-----Ccceeeecccceeccccc
Confidence 5779999999999988854 3555543 223489999999998888877775432 1223344444443321
Q ss_pred -------CCCCeeEEEEcCCCccccCCc----------------cchHHHHHHHHHHHhhcccCCCcEEEEEecC-----
Q psy19 381 -------KPACVDGIVTDLPFGKRVGSK----------------SNNFLLYRLFLIEIGKIVRPQIGRAILLTSD----- 432 (494)
Q Consensus 381 -------~~~~~D~IVtNPPYG~r~~~~----------------~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~----- 432 (494)
....||-|++|=|=..- +.. .++..+--.+|....++||+| |++|.-|++
T Consensus 226 ~~~~~~~~~~~fDrVLvDVPCS~D-gt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~G-G~lVYSTCSLnpie 303 (375)
T KOG2198|consen 226 LKDGNDKEQLKFDRVLVDVPCSGD-GTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVG-GRLVYSTCSLNPIE 303 (375)
T ss_pred cccCchhhhhhcceeEEecccCCC-cccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCC-CEEEEeccCCCchh
Confidence 12379999999995211 111 234455567888999999999 999998883
Q ss_pred -HHHHHHHHHhcc
Q psy19 433 -RKHLIQALHITS 444 (494)
Q Consensus 433 -~~~l~~~l~~~~ 444 (494)
...+..++...+
T Consensus 304 NEaVV~~~L~~~~ 316 (375)
T KOG2198|consen 304 NEAVVQEALQKVG 316 (375)
T ss_pred hHHHHHHHHHHhc
Confidence 233455565543
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.022 Score=55.41 Aligned_cols=97 Identities=11% Similarity=0.023 Sum_probs=73.3
Q ss_pred CCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCC-eeEEEE
Q psy19 312 GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPAC-VDGIVT 390 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~-~D~IVt 390 (494)
+.+++|+|+|.|--+|-.|..+|+..++-+|...+-+.--+.-....++ .++.++++.+.++... .. ||+|.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L-----~nv~i~~~RaE~~~~~-~~~~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL-----ENVEIVHGRAEEFGQE-KKQYDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC-----CCeEEehhhHhhcccc-cccCcEEEe
Confidence 5799999999999999999889999999999999888887777776654 3467888888877422 23 999988
Q ss_pred cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEE
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAI 427 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lv 427 (494)
|.-. .+. .++.-...++++| |.++
T Consensus 142 ------RAva--~L~----~l~e~~~pllk~~-g~~~ 165 (215)
T COG0357 142 ------RAVA--SLN----VLLELCLPLLKVG-GGFL 165 (215)
T ss_pred ------ehcc--chH----HHHHHHHHhcccC-Ccch
Confidence 4322 232 3334577788998 7654
|
|
| >KOG1253|consensus | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0026 Score=67.98 Aligned_cols=108 Identities=24% Similarity=0.229 Sum_probs=83.7
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCC-CeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC----CCC
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPH-TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF----KPA 383 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~-~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~----~~~ 383 (494)
-.++-+|||.+|+||--+|.-|...++ ..+++.|.++.++...++|++.+++ .+.+...+.|+..+.. ...
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v----~~ive~~~~DA~~lM~~~~~~~~ 182 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV----EDIVEPHHSDANVLMYEHPMVAK 182 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc----hhhcccccchHHHHHHhcccccc
Confidence 346778999999999998888877665 3688999999999999999998864 5567788889877632 235
Q ss_pred CeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 384 CVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 384 ~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
.||+|=.|| ||.-. .||..+.+-++.| |.+.+-+.|.
T Consensus 183 ~FDvIDLDP-yGs~s-----------~FLDsAvqav~~g-GLL~vT~TD~ 219 (525)
T KOG1253|consen 183 FFDVIDLDP-YGSPS-----------PFLDSAVQAVRDG-GLLCVTCTDM 219 (525)
T ss_pred ccceEecCC-CCCcc-----------HHHHHHHHHhhcC-CEEEEEecch
Confidence 899999995 87432 5677788888887 8766654443
|
|
| >KOG1709|consensus | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.035 Score=53.78 Aligned_cols=164 Identities=15% Similarity=0.113 Sum_probs=107.5
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
..|+-+.+|+++. ..|.+||..|-|.|-+..-.-..-| ...+-++-+|..++..+.+.-.- ..++.++
T Consensus 87 EtpiMha~A~ai~-----tkggrvLnVGFGMgIidT~iQe~~p-~~H~IiE~hp~V~krmr~~gw~e------k~nViil 154 (271)
T KOG1709|consen 87 ETPIMHALAEAIS-----TKGGRVLNVGFGMGIIDTFIQEAPP-DEHWIIEAHPDVLKRMRDWGWRE------KENVIIL 154 (271)
T ss_pred hhHHHHHHHHHHh-----hCCceEEEeccchHHHHHHHhhcCC-cceEEEecCHHHHHHHHhccccc------ccceEEE
Confidence 3456666676665 4788999999999976554333333 46677899999999999886521 2344555
Q ss_pred eeccccc--cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE---ecCHHHHHHHHHhcccc
Q psy19 372 VCNVRQL--CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL---TSDRKHLIQALHITSAL 446 (494)
Q Consensus 372 ~~Da~~l--~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll---t~~~~~l~~~l~~~~~l 446 (494)
.+-..+. .++++.||.|.-|- |+.. -+++..++ +.+.++|||+ |.+-+. ..+...+-+.
T Consensus 155 ~g~WeDvl~~L~d~~FDGI~yDT-y~e~---yEdl~~~h----qh~~rLLkP~-gv~SyfNg~~~~~~~~~~v------- 218 (271)
T KOG1709|consen 155 EGRWEDVLNTLPDKHFDGIYYDT-YSEL---YEDLRHFH----QHVVRLLKPE-GVFSYFNGLGADNLMFYDV------- 218 (271)
T ss_pred ecchHhhhccccccCcceeEeec-hhhH---HHHHHHHH----HHHhhhcCCC-ceEEEecCcccchhhhhhh-------
Confidence 5543333 35677899999873 3322 23444444 4899999999 876653 2233322222
Q ss_pred ceeeeeEEEccCCceEEEEEEeeCCCCCCCcccCccC
Q psy19 447 WKCRKQIKINMSGMKSFVFILNRTADLFDYAIHGLKE 483 (494)
Q Consensus 447 ~~~~~~~~v~~Ggl~~~i~v~~~~~~~~d~~~~~~~~ 483 (494)
.+..-.+.+.+-|+.|.+.-.....|-.++-|.+++-
T Consensus 219 y~~lV~iev~~~g~~~~l~~~~v~~~l~de~w~~vk~ 255 (271)
T KOG1709|consen 219 YKILVMIEVATYGVPCTLEPGPVDEQLGDELWNGVKR 255 (271)
T ss_pred hheeEEEEeecCCCceeeeccccccccchhhhcchhh
Confidence 2334456667779999998888888888888876543
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.03 Score=57.76 Aligned_cols=123 Identities=11% Similarity=0.074 Sum_probs=76.0
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChH---HHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTI---PVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGti---lIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
+-..-+..|+... .++..|+|+|||+|+= ++++... ......+++||+..+++.+..++..... + .-.+.-
T Consensus 62 iL~~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~--p-~l~v~~ 136 (319)
T TIGR03439 62 ILKKHSSDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF--S-HVRCAG 136 (319)
T ss_pred HHHHHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC--C-CeEEEE
Confidence 3344455555544 3567899999999964 4444332 2246789999999999999999983211 1 123445
Q ss_pred eeeccccc----cCC--CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhh-cccCCCcEEEE
Q psy19 371 LVCNVRQL----CFK--PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGK-IVRPQIGRAIL 428 (494)
Q Consensus 371 ~~~Da~~l----~~~--~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~r-vLkpg~G~lvl 428 (494)
+++|+.+. +-+ .....+++. .|..+|.... .--..||+.+.+ .|+|| +.+.+
T Consensus 137 l~gdy~~~l~~l~~~~~~~~~r~~~f---lGSsiGNf~~--~ea~~fL~~~~~~~l~~~-d~lLi 195 (319)
T TIGR03439 137 LLGTYDDGLAWLKRPENRSRPTTILW---LGSSIGNFSR--PEAAAFLAGFLATALSPS-DSFLI 195 (319)
T ss_pred EEecHHHHHhhcccccccCCccEEEE---eCccccCCCH--HHHHHHHHHHHHhhCCCC-CEEEE
Confidence 78888653 111 122444444 2445554322 223468889999 99998 87766
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG3115|consensus | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0058 Score=58.53 Aligned_cols=117 Identities=18% Similarity=0.190 Sum_probs=76.0
Q ss_pred CCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCC--Ccccceeeeeeccccc-c--CCCC--C
Q psy19 312 GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNL--NRELKVSPLVCNVRQL-C--FKPA--C 384 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~--~~~~~i~~~~~Da~~l-~--~~~~--~ 384 (494)
...+.|+|||-|+++++++-.+|+.-++|.+|--+.-+..+..+.+.+... +...++.+...++... | +..+ +
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 356999999999999999999999999999999988888888777654211 1123455666665543 2 1112 1
Q ss_pred eeE-EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 385 VDG-IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 385 ~D~-IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
-+. ..-||=|-.+.... .-+-..++.+.+.+|++| |.++.+|.-
T Consensus 141 kmff~fpdpHfk~~khk~---rii~~~l~~eyay~l~~g-g~~ytitDv 185 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKW---RIITSTLLSEYAYVLREG-GILYTITDV 185 (249)
T ss_pred cceeecCChhHhhhhccc---eeechhHHHHHHhhhhcC-ceEEEEeeH
Confidence 222 22344444332211 112334666788899999 998888763
|
|
| >KOG2078|consensus | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0014 Score=68.64 Aligned_cols=64 Identities=17% Similarity=0.257 Sum_probs=54.1
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l 378 (494)
++|+.|+|+|||.|-+.+.|+.. +++|++.|.+|++++..+.|+..+.+. ...+.+.+.|+...
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv~---~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKVD---PSAIEIFNMDAKDF 311 (495)
T ss_pred CCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccccc---hhheeeecccHHHH
Confidence 68999999999999999999987 799999999999999999999977552 22367777776543
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.029 Score=55.95 Aligned_cols=93 Identities=15% Similarity=0.146 Sum_probs=60.2
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt 390 (494)
...++||+|+|.|.+....+..+ ..|++.|+++.|.... +..|. +++ |..++.-.+..||+|.|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL----~~kg~--------~vl--~~~~w~~~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRL----SKKGF--------TVL--DIDDWQQTDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHH----HhCCC--------eEE--ehhhhhccCCceEEEee
Confidence 34679999999999999888875 4699999999984443 33332 122 22223222357999988
Q ss_pred cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
-= -+..... -..+|+++.+.|+|+ |++++
T Consensus 158 LN----vLDRc~~----P~~LL~~i~~~l~p~-G~lil 186 (265)
T PF05219_consen 158 LN----VLDRCDR----PLTLLRDIRRALKPN-GRLIL 186 (265)
T ss_pred hh----hhhccCC----HHHHHHHHHHHhCCC-CEEEE
Confidence 10 0111111 125667899999998 98765
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0089 Score=60.55 Aligned_cols=94 Identities=20% Similarity=0.267 Sum_probs=58.1
Q ss_pred EEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc---CCCCCeeEEEE
Q psy19 314 VFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC---FKPACVDGIVT 390 (494)
Q Consensus 314 ~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~---~~~~~~D~IVt 390 (494)
+++|+|||.|++.+-+.... ...++++|+|+.+++..+.|.. ....+|+.++. ++. .+|+++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~~------------~~~~~Di~~~~~~~l~~-~~D~l~g 67 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANFP------------EVICGDITEIDPSDLPK-DVDLLIG 67 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHHT------------EEEESHGGGCHHHHHHH-T-SEEEE
T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhccc------------ccccccccccccccccc-cceEEEe
Confidence 68999999999987665552 2467899999999999999986 24556666653 332 5999999
Q ss_pred cCC---C---ccccCCccchHHHHHHHHHHHhhcccCC
Q psy19 391 DLP---F---GKRVGSKSNNFLLYRLFLIEIGKIVRPQ 422 (494)
Q Consensus 391 NPP---Y---G~r~~~~~~~~~ly~~fL~~l~rvLkpg 422 (494)
-|| | |.+.+....-..|+..+++-+ +.++|.
T Consensus 68 gpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v-~~~~Pk 104 (335)
T PF00145_consen 68 GPPCQGFSIAGKRKGFDDPRNSLFFEFLRIV-KELKPK 104 (335)
T ss_dssp E---TTTSTTSTHHCCCCHTTSHHHHHHHHH-HHHS-S
T ss_pred ccCCceEeccccccccccccchhhHHHHHHH-hhccce
Confidence 999 3 222222112224565555533 456787
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0028 Score=68.08 Aligned_cols=96 Identities=19% Similarity=0.181 Sum_probs=60.1
Q ss_pred CEEEEEcCCcChHHHHHHhcCCCCeEEEE---eCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 313 DVFLDPMCGGGTIPVECSLSYPHTFFVCG---DINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 313 ~~VLDP~CGSGtilIEAA~~~~~~~v~G~---Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
-++||.|||+|+|+..+..+ ++.++.+ |.++..++.|.+. |+. . -+...-...+|+++++||+|=
T Consensus 119 R~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfaleR----Gvp----a--~~~~~~s~rLPfp~~~fDmvH 186 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALER----GVP----A--MIGVLGSQRLPFPSNAFDMVH 186 (506)
T ss_pred EEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhhc----Ccc----h--hhhhhccccccCCccchhhhh
Confidence 36999999999998776655 4444333 5666666666542 221 1 111223567899999999985
Q ss_pred E---cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 390 T---DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 390 t---NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
| .-||...- . .+|-++-|+|||| |.+++..+
T Consensus 187 csrc~i~W~~~~-----g-----~~l~evdRvLRpG-Gyfv~S~p 220 (506)
T PF03141_consen 187 CSRCLIPWHPND-----G-----FLLFEVDRVLRPG-GYFVLSGP 220 (506)
T ss_pred cccccccchhcc-----c-----ceeehhhhhhccC-ceEEecCC
Confidence 5 22333211 1 2444799999999 98777544
|
; GO: 0008168 methyltransferase activity |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.028 Score=57.06 Aligned_cols=91 Identities=21% Similarity=0.308 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCC-CeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 296 KPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPH-TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 296 ~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~-~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
-+.|...++.+..++++...+|.--|.|+.+-......+. .+++|+|.|+.|++.|++.+..+ .+++.+++..
T Consensus 8 ipVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~------~~r~~~v~~~ 81 (314)
T COG0275 8 IPVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF------DGRVTLVHGN 81 (314)
T ss_pred cchHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc------CCcEEEEeCc
Confidence 3456667777788889999999999999999888877654 56999999999999999999854 3467888888
Q ss_pred ccccc-----CCCCCeeEEEEcC
Q psy19 375 VRQLC-----FKPACVDGIVTDL 392 (494)
Q Consensus 375 a~~l~-----~~~~~~D~IVtNP 392 (494)
+.++. ...+.+|.|+.|.
T Consensus 82 F~~l~~~l~~~~i~~vDGiL~DL 104 (314)
T COG0275 82 FANLAEALKELGIGKVDGILLDL 104 (314)
T ss_pred HHHHHHHHHhcCCCceeEEEEec
Confidence 77662 1235788888874
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.005 Score=58.83 Aligned_cols=48 Identities=25% Similarity=0.418 Sum_probs=31.8
Q ss_pred eeEEEEcCCCccccC---C--------ccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 385 VDGIVTDLPFGKRVG---S--------KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 385 ~D~IVtNPPYG~r~~---~--------~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
+|+|++||||+.... . ..+-...+..++.++.|+|+|+ |.+++.+.+.
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~-g~~~i~~~~~ 59 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYRVLKPG-GSIFIFIDDR 59 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEE-CC
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHhhcCCC-eeEEEEecch
Confidence 699999999986554 0 0122344567888999999999 9988877754
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.086 Score=50.70 Aligned_cols=118 Identities=11% Similarity=0.070 Sum_probs=84.7
Q ss_pred ccchHHHHHHHHHHh---CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCccccee
Q psy19 293 TTLKPTIAYNMVRLA---SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVS 369 (494)
Q Consensus 293 a~L~e~lAa~ll~la---~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~ 369 (494)
.|-|..|||+++.=. ..++|..||=+|+-|||..--.+-.-+...++|++.+++..+-...-++.. .++-
T Consensus 55 np~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R-------~Ni~ 127 (231)
T COG1889 55 NPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR-------PNII 127 (231)
T ss_pred CcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC-------CCce
Confidence 467899999998744 357899999999999999988887766678999999999887766555532 2345
Q ss_pred eeeecccccc---CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 370 PLVCNVRQLC---FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 370 ~~~~Da~~l~---~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
.+.+|++... .--+.+|+|..|- ..... . +-+...+..+|+++ |.+++
T Consensus 128 PIL~DA~~P~~Y~~~Ve~VDviy~DV------AQp~Q-a---~I~~~Na~~FLk~~-G~~~i 178 (231)
T COG1889 128 PILEDARKPEKYRHLVEKVDVIYQDV------AQPNQ-A---EILADNAEFFLKKG-GYVVI 178 (231)
T ss_pred eeecccCCcHHhhhhcccccEEEEec------CCchH-H---HHHHHHHHHhcccC-CeEEE
Confidence 6778988642 1124699999974 22222 1 22334678899998 76554
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.03 E-value=1 Score=45.14 Aligned_cols=127 Identities=13% Similarity=0.026 Sum_probs=84.1
Q ss_pred CCCCCCCCEEEEEE-EecCcceeccccccc-ccccccc-c--ccccccchHHHH--HHHHHHh-------CCCCCCEEEE
Q psy19 252 LVDLDDYDIDINLQ-IRYNEAYVGLPVTQT-SLHRRNI-V--EFNITTLKPTIA--YNMVRLA-------SPIPGDVFLD 317 (494)
Q Consensus 252 ~vdl~~pdi~i~v~-l~~~~~~l~l~lsg~-sL~~Rgy-~--~~~~a~L~e~lA--a~ll~la-------~~~~g~~VLD 317 (494)
+.+.+.+-..+++. +.++.|++|+.-+.. +.+.=|. | +...||-+.+|- .+++.+. +..+|..-+|
T Consensus 138 s~~~~~~~p~lhv~f~~~~~cyvGysy~~n~s~~~mGIPRLKfp~dAPSRStLKLEEA~~tfip~~E~~~rL~~~M~avD 217 (358)
T COG2933 138 SAYEHPKRPVLHVFFIAPGCCYVGYSYSNNNSPFYMGIPRLKFPADAPSRSTLKLEEAFHTFIPRDEWDKRLAPGMWAVD 217 (358)
T ss_pred ccccCCCCcEEEEEEEcCCeEEEeecccCCCCccccCCccccCCCCCCchhhhhHHHHHHHhcChhhhhhhhcCCceeee
Confidence 34444444455554 578899999887753 4555554 2 445677777653 3333332 2358999999
Q ss_pred EcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEEcC
Q psy19 318 PMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDL 392 (494)
Q Consensus 318 P~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNP 392 (494)
+|+-.|+-.-....+ +..|+++|.-+-+ .++...| .++-...|-+...+....+|++|||+
T Consensus 218 LGAcPGGWTyqLVkr--~m~V~aVDng~ma-----~sL~dtg-------~v~h~r~DGfk~~P~r~~idWmVCDm 278 (358)
T COG2933 218 LGACPGGWTYQLVKR--NMRVYAVDNGPMA-----QSLMDTG-------QVTHLREDGFKFRPTRSNIDWMVCDM 278 (358)
T ss_pred cccCCCccchhhhhc--ceEEEEeccchhh-----hhhhccc-------ceeeeeccCcccccCCCCCceEEeeh
Confidence 999999887777666 6789999987754 3444322 35666778887744346899999986
|
|
| >KOG1331|consensus | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.016 Score=58.33 Aligned_cols=99 Identities=20% Similarity=0.231 Sum_probs=70.1
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt 390 (494)
.|..++|.+||-|-.+. ..|.+.++|.|+....+..|++- + ...+..+|+..+|+++.+||.+++
T Consensus 45 ~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~--------~---~~~~~~ad~l~~p~~~~s~d~~ls 109 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRS--------G---GDNVCRADALKLPFREESFDAALS 109 (293)
T ss_pred CcceeeecccCCcccCc----CCCcceeeecchhhhhccccccC--------C---CceeehhhhhcCCCCCCccccchh
Confidence 48899999999996653 34678899999999988887742 1 114677899999988889998766
Q ss_pred cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
= ..-.+-.....-...++++.+.|+|| |.+.+.+
T Consensus 110 i-----avihhlsT~~RR~~~l~e~~r~lrpg-g~~lvyv 143 (293)
T KOG1331|consen 110 I-----AVIHHLSTRERRERALEELLRVLRPG-GNALVYV 143 (293)
T ss_pred h-----hhhhhhhhHHHHHHHHHHHHHHhcCC-CceEEEE
Confidence 1 11111111223346788999999999 8765543
|
|
| >KOG4589|consensus | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.095 Score=49.85 Aligned_cols=102 Identities=18% Similarity=0.186 Sum_probs=71.4
Q ss_pred CCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee-ccccc--------c
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC-NVRQL--------C 379 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~-Da~~l--------~ 379 (494)
+++++|||.||-.|.-+--|.+. .|...|+|+|+-+-. +.. -+.++++ |+++. .
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~---------------p~~-Ga~~i~~~dvtdp~~~~ki~e~ 131 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE---------------PPE-GATIIQGNDVTDPETYRKIFEA 131 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc---------------CCC-CcccccccccCCHHHHHHHHHh
Confidence 58999999999999998777665 488899999985421 111 1234444 65542 1
Q ss_pred CCCCCeeEEEEcCC---CccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 380 FKPACVDGIVTDLP---FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 380 ~~~~~~D~IVtNPP---YG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
+++..+|+|++|+- -|.++-++....+|....+.-+...++|+ |.++.
T Consensus 132 lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~-g~fvc 182 (232)
T KOG4589|consen 132 LPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPN-GSFVC 182 (232)
T ss_pred CCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCC-cEEEE
Confidence 34568999999973 36666666566677777777777788999 87765
|
|
| >KOG1227|consensus | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.018 Score=58.27 Aligned_cols=75 Identities=15% Similarity=0.018 Sum_probs=57.2
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt 390 (494)
.+..|+|+++|-|.|.+...-......|++.|++|.+++..++|++.+++ .++..+..+|-+...+ ....|.|..
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V----~~r~~i~~gd~R~~~~-~~~AdrVnL 268 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNV----MDRCRITEGDNRNPKP-RLRADRVNL 268 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcch----HHHHHhhhccccccCc-cccchheee
Confidence 45899999999998876333222236899999999999999999999875 4556778888877543 356777655
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.087 Score=51.27 Aligned_cols=121 Identities=13% Similarity=0.085 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt 390 (494)
...+.||.|||.|.+.-...+.. .-.|-.+|..+..++.|++.+...+ ....++++.-..++.+..++||+|-+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~-----~~v~~~~~~gLQ~f~P~~~~YDlIW~ 128 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDN-----PRVGEFYCVGLQDFTPEEGKYDLIWI 128 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGG-----CCEEEEEES-GGG----TT-EEEEEE
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccC-----CCcceEEecCHhhccCCCCcEeEEEe
Confidence 35689999999999976654432 3578899999999999998766411 12345777777766444579999988
Q ss_pred cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE---Eec---------------CHHHHHHHHHhcc
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL---LTS---------------DRKHLIQALHITS 444 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl---lt~---------------~~~~l~~~l~~~~ 444 (494)
.== ++.-.+ .+ +-.||+.....|+|+ |.+++ ++. ....+.+.+.+.|
T Consensus 129 QW~----lghLTD-~d-lv~fL~RCk~~L~~~-G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AG 193 (218)
T PF05891_consen 129 QWC----LGHLTD-ED-LVAFLKRCKQALKPN-GVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAG 193 (218)
T ss_dssp ES-----GGGS-H-HH-HHHHHHHHHHHEEEE-EEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT
T ss_pred hHh----hccCCH-HH-HHHHHHHHHHhCcCC-cEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcC
Confidence 421 111111 22 346888899999998 88776 333 2245677777766
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >KOG1269|consensus | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.066 Score=56.22 Aligned_cols=107 Identities=21% Similarity=0.181 Sum_probs=76.4
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeE
Q psy19 308 SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG 387 (494)
Q Consensus 308 ~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~ 387 (494)
+..++..++|.+||.|....+.+.. ..+.++|.|.++..+..+..-...+++ .....+..+|+...|++++.||.
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~l----~~k~~~~~~~~~~~~fedn~fd~ 181 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAYL----DNKCNFVVADFGKMPFEDNTFDG 181 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHHh----hhhcceehhhhhcCCCCccccCc
Confidence 3457778999999999998777653 457899999999877777665554443 34455677899988898889998
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
+-+. .......+...+|. ++.++++|| |....
T Consensus 182 v~~l----d~~~~~~~~~~~y~----Ei~rv~kpG-G~~i~ 213 (364)
T KOG1269|consen 182 VRFL----EVVCHAPDLEKVYA----EIYRVLKPG-GLFIV 213 (364)
T ss_pred EEEE----eecccCCcHHHHHH----HHhcccCCC-ceEEe
Confidence 7662 11112234455555 799999999 86544
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.072 Score=53.45 Aligned_cols=105 Identities=15% Similarity=0.095 Sum_probs=70.3
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCC---CCeeE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKP---ACVDG 387 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~---~~~D~ 387 (494)
.|..|+=.| ----++|++|+.....+|.-+|||++.+....+-++..|+ .++..+..|.++ |++. ..||+
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-----~~ie~~~~Dlr~-plpe~~~~kFDv 224 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-----NNIEAFVFDLRN-PLPEDLKRKFDV 224 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-----cchhheeehhcc-cChHHHHhhCCe
Confidence 345566555 3444566666654446788899999999999999998876 235778889887 4442 58999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhccc-CC-CcEEEEEec
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVR-PQ-IGRAILLTS 431 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLk-pg-~G~lvllt~ 431 (494)
++||||+-.. -++.|+..-...|+ +| .|.+.+-..
T Consensus 225 fiTDPpeTi~---------alk~FlgRGI~tLkg~~~aGyfgiT~r 261 (354)
T COG1568 225 FITDPPETIK---------ALKLFLGRGIATLKGEGCAGYFGITRR 261 (354)
T ss_pred eecCchhhHH---------HHHHHHhccHHHhcCCCccceEeeeec
Confidence 9999997422 14455555555666 33 255555433
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.13 Score=52.98 Aligned_cols=94 Identities=19% Similarity=0.214 Sum_probs=60.3
Q ss_pred EEEEcCCcChHHHHHHhcCCCCe-EEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC-CCCeeEEEEcC
Q psy19 315 FLDPMCGGGTIPVECSLSYPHTF-FVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK-PACVDGIVTDL 392 (494)
Q Consensus 315 VLDP~CGSGtilIEAA~~~~~~~-v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~-~~~~D~IVtNP 392 (494)
|+|+|||.|++..-+-.. +.. +.++|+++.+++..+.|... .+..+|+.++... -..+|+++.-|
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~~-----------~~~~~Di~~~~~~~~~~~dvl~gg~ 67 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFGN-----------KVPFGDITKISPSDIPDFDILLGGF 67 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCCC-----------CCCccChhhhhhhhCCCcCEEEecC
Confidence 689999999987665444 444 56799999999999998641 2345677766321 13589999999
Q ss_pred C---C---ccccCCccchHHHHHHHHHHHhhcccCC
Q psy19 393 P---F---GKRVGSKSNNFLLYRLFLIEIGKIVRPQ 422 (494)
Q Consensus 393 P---Y---G~r~~~~~~~~~ly~~fL~~l~rvLkpg 422 (494)
| | |.+.+....-..|+..+++- .+.++|.
T Consensus 68 PCq~fS~ag~~~~~~d~r~~L~~~~~r~-i~~~~P~ 102 (315)
T TIGR00675 68 PCQPFSIAGKRKGFEDTRGTLFFEIVRI-LKEKKPK 102 (315)
T ss_pred CCcccchhcccCCCCCchhhHHHHHHHH-HhhcCCC
Confidence 9 3 33322222223455555543 3445776
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.36 Score=48.88 Aligned_cols=105 Identities=14% Similarity=0.086 Sum_probs=56.8
Q ss_pred CEEEEEcCCcChHHHH---HHh-cCCCCeEEEEeCCHHHHHHHHHHHH-hccCCCCcccceeeeeeccccccCCCCCeeE
Q psy19 313 DVFLDPMCGGGTIPVE---CSL-SYPHTFFVCGDINEKLVLKTQANVL-HNSGNLNRELKVSPLVCNVRQLCFKPACVDG 387 (494)
Q Consensus 313 ~~VLDP~CGSGtilIE---AA~-~~~~~~v~G~Did~~al~~Ar~Nl~-~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~ 387 (494)
.+|+=+|| |-+++. .+. ..++..+.++|+|+.|++.|++=+. ..| +..++.++.+|....+..-..||+
T Consensus 122 ~rVaFIGS--GPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~----L~~~m~f~~~d~~~~~~dl~~~Dv 195 (276)
T PF03059_consen 122 SRVAFIGS--GPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG----LSKRMSFITADVLDVTYDLKEYDV 195 (276)
T ss_dssp -EEEEE-----SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H----H-SSEEEEES-GGGG-GG----SE
T ss_pred ceEEEEcC--CCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc----ccCCeEEEecchhccccccccCCE
Confidence 47876655 544433 332 2346789999999999999998777 333 356678999999877543357998
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
|+.--= .+... +--.+++..+.+.++|| ..+++=+.
T Consensus 196 V~lAal----Vg~~~---e~K~~Il~~l~~~m~~g-a~l~~Rsa 231 (276)
T PF03059_consen 196 VFLAAL----VGMDA---EPKEEILEHLAKHMAPG-ARLVVRSA 231 (276)
T ss_dssp EEE-TT-----S-------SHHHHHHHHHHHS-TT-SEEEEEE-
T ss_pred EEEhhh----ccccc---chHHHHHHHHHhhCCCC-cEEEEecc
Confidence 877321 22110 01235677899999998 76655433
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.041 Score=46.71 Aligned_cols=98 Identities=11% Similarity=-0.029 Sum_probs=38.3
Q ss_pred EEEcCCcChHHHHHHhcCCC---CeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc--cCCCCCeeEEEE
Q psy19 316 LDPMCGGGTIPVECSLSYPH---TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL--CFKPACVDGIVT 390 (494)
Q Consensus 316 LDP~CGSGtilIEAA~~~~~---~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l--~~~~~~~D~IVt 390 (494)
|++||..|...+..+...+. .+++++|..+. .+.++++++..+ ...++.++++|..+. .+...++|+|+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~----~~~~~~~~~g~s~~~l~~~~~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAG----LSDRVEFIQGDSPDFLPSLPDGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS-------------GG----G-BTEEEEES-THHHHHHHHH--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcC----CCCeEEEEEcCcHHHHHHcCCCCEEEEEE
Confidence 46786677655444433222 37999999996 444555555433 345688999988655 232468999999
Q ss_pred cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
|=+ + ..+.....++.+...|+|| |.+++
T Consensus 76 Dg~-------H--~~~~~~~dl~~~~~~l~~g-gviv~ 103 (106)
T PF13578_consen 76 DGD-------H--SYEAVLRDLENALPRLAPG-GVIVF 103 (106)
T ss_dssp ES------------HHHHHHHHHHHGGGEEEE-EEEEE
T ss_pred CCC-------C--CHHHHHHHHHHHHHHcCCC-eEEEE
Confidence 742 1 1122334556688889998 75543
|
|
| >KOG3201|consensus | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.11 Score=48.42 Aligned_cols=129 Identities=19% Similarity=0.126 Sum_probs=78.9
Q ss_pred cchHHHHHHHHHHhCCCCCCEEEEEcCCc-ChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGG-GTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~~g~~VLDP~CGS-GtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
|-.|.||+.++.--..-.|..||++|.|- |--++..|..-|...|+-.|-+.++++-.+.-...+-. .. ...+....
T Consensus 12 pseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~-s~-~tsc~vlr 89 (201)
T KOG3201|consen 12 PSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMA-SS-LTSCCVLR 89 (201)
T ss_pred ccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccc-cc-cceehhhH
Confidence 45677888776643333567899998773 33345555556677899999999999887765544321 11 12222233
Q ss_pred eccccc--cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 373 CNVRQL--CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 373 ~Da~~l--~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
++.-.- ......||.|++- .. --..+.-..+++.+.++|+|. |++.+.+|.+
T Consensus 90 w~~~~aqsq~eq~tFDiIlaA-------DC-lFfdE~h~sLvdtIk~lL~p~-g~Al~fsPRR 143 (201)
T KOG3201|consen 90 WLIWGAQSQQEQHTFDIILAA-------DC-LFFDEHHESLVDTIKSLLRPS-GRALLFSPRR 143 (201)
T ss_pred HHHhhhHHHHhhCcccEEEec-------cc-hhHHHHHHHHHHHHHHHhCcc-cceeEecCcc
Confidence 322111 1123589999881 11 112333455667899999999 9999999965
|
|
| >KOG4058|consensus | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.18 Score=46.21 Aligned_cols=83 Identities=12% Similarity=0.043 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccc
Q psy19 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVR 376 (494)
Q Consensus 297 e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~ 376 (494)
+.++. ++.++.-++..+++|+|.|.|.|.+.||... -....|++++|-.+..++-.+-.+|+ .....|...|..
T Consensus 59 eQv~n-VLSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~----~k~trf~Rkdlw 132 (199)
T KOG4058|consen 59 EQVEN-VLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGC----AKSTRFRRKDLW 132 (199)
T ss_pred HHHHH-HHHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhc----ccchhhhhhhhh
Confidence 44444 3555555666789999999999999998873 25688999999999999999888875 344568888888
Q ss_pred cccCCCCCe
Q psy19 377 QLCFKPACV 385 (494)
Q Consensus 377 ~l~~~~~~~ 385 (494)
+..+.+-.+
T Consensus 133 K~dl~dy~~ 141 (199)
T KOG4058|consen 133 KVDLRDYRN 141 (199)
T ss_pred hccccccce
Confidence 776654333
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=93.91 E-value=1.5 Score=40.90 Aligned_cols=111 Identities=14% Similarity=0.023 Sum_probs=66.9
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
....||..++..+. ++.+|+=++|=|--..+.. ...+...++-.|+|.+--. .+ .. .+..-|
T Consensus 11 T~~~l~~~l~~~~~--~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~--------~~------~~-~F~fyD 72 (162)
T PF10237_consen 11 TAEFLARELLDGAL--DDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQ--------FG------GD-EFVFYD 72 (162)
T ss_pred HHHHHHHHHHHhcC--CCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHh--------cC------Cc-ceEECC
Confidence 44566666666543 4578998888775554443 1235678888999986522 11 11 244444
Q ss_pred cccc---c--CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 375 VRQL---C--FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 375 a~~l---~--~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
.... | + .+++|+||+||||-. .+........+.-+++++ ++++++|+..
T Consensus 73 ~~~p~~~~~~l-~~~~d~vv~DPPFl~--------~ec~~k~a~ti~~L~k~~-~kii~~Tg~~ 126 (162)
T PF10237_consen 73 YNEPEELPEEL-KGKFDVVVIDPPFLS--------EECLTKTAETIRLLLKPG-GKIILCTGEE 126 (162)
T ss_pred CCChhhhhhhc-CCCceEEEECCCCCC--------HHHHHHHHHHHHHHhCcc-ceEEEecHHH
Confidence 4332 1 2 368999999999921 223333334455556777 8999888864
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.74 Score=44.85 Aligned_cols=125 Identities=14% Similarity=0.036 Sum_probs=79.0
Q ss_pred CEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC---CCCeeEEE
Q psy19 313 DVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK---PACVDGIV 389 (494)
Q Consensus 313 ~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~---~~~~D~IV 389 (494)
-++||+||=+..-.+... +-..|+.+|+++.. -.+.+.|+.+.|++ .+.||+|+
T Consensus 53 lrlLEVGals~~N~~s~~---~~fdvt~IDLns~~--------------------~~I~qqDFm~rplp~~~~e~FdvIs 109 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTS---GWFDVTRIDLNSQH--------------------PGILQQDFMERPLPKNESEKFDVIS 109 (219)
T ss_pred ceEEeecccCCCCccccc---CceeeEEeecCCCC--------------------CCceeeccccCCCCCCcccceeEEE
Confidence 589999998666544322 22459999998721 14789999998764 46899998
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcE-----EEEEecCH----------HHHHHHHHhccccceeeeeEE
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGR-----AILLTSDR----------KHLIQALHITSALWKCRKQIK 454 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~-----lvllt~~~----------~~l~~~l~~~~~l~~~~~~~~ 454 (494)
+-.=-. .+.+... -..++..+.++|+|+ |. +++++|.+ +.|...+...|. ...+.
T Consensus 110 ~SLVLN-fVP~p~~----RG~Ml~r~~~fL~~~-g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf--~~~~~-- 179 (219)
T PF11968_consen 110 LSLVLN-FVPDPKQ----RGEMLRRAHKFLKPP-GLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGF--TRVKY-- 179 (219)
T ss_pred EEEEEe-eCCCHHH----HHHHHHHHHHHhCCC-CccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCc--EEEEE--
Confidence 843100 1122211 235677899999999 98 99998833 346677777773 33332
Q ss_pred EccCCceEEEEEEeeCCC
Q psy19 455 INMSGMKSFVFILNRTAD 472 (494)
Q Consensus 455 v~~Ggl~~~i~v~~~~~~ 472 (494)
...-....+.+++...
T Consensus 180 --~~~~Kl~y~l~r~~~~ 195 (219)
T PF11968_consen 180 --KKSKKLAYWLFRKSGK 195 (219)
T ss_pred --EecCeEEEEEEeecCC
Confidence 2233445666666555
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.13 Score=53.34 Aligned_cols=71 Identities=17% Similarity=0.205 Sum_probs=52.7
Q ss_pred CEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCC--C-CeeEEE
Q psy19 313 DVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKP--A-CVDGIV 389 (494)
Q Consensus 313 ~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~--~-~~D~IV 389 (494)
.+++|+|||.|.+..-....+ --.+.++|+|+.+++.-+.|... ..+...|+..+.... . .+|+|+
T Consensus 4 ~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~~~----------~~~~~~di~~~~~~~~~~~~~Dvli 72 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANFPH----------GDIILGDIKELDGEALRKSDVDVLI 72 (328)
T ss_pred ceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhCCC----------CceeechHhhcChhhccccCCCEEE
Confidence 479999999999986655553 24577889999999999998763 135666776653211 2 799999
Q ss_pred EcCCC
Q psy19 390 TDLPF 394 (494)
Q Consensus 390 tNPPY 394 (494)
.-||=
T Consensus 73 gGpPC 77 (328)
T COG0270 73 GGPPC 77 (328)
T ss_pred eCCCC
Confidence 99993
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.34 Score=55.48 Aligned_cols=120 Identities=13% Similarity=0.061 Sum_probs=65.0
Q ss_pred CCCEEEEEcCCcChHHHHHHhcC--C-------CCeEEEEeCCHHHHHHHHHHHHhcc--CCCCcccceeeeeeccccc-
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSY--P-------HTFFVCGDINEKLVLKTQANVLHNS--GNLNRELKVSPLVCNVRQL- 378 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~--~-------~~~v~G~Did~~al~~Ar~Nl~~~g--~~~~~~~~i~~~~~Da~~l- 378 (494)
.+-.|||||+|||||........ + ...+.+.||---+.=+|.-|+...- .+......-.+...|.++.
T Consensus 845 ~~vhilDpFtGTGtFi~RlL~alIs~edl~rKf~~eLhA~eIvLLsYYIAaiNIe~t~~~~~gd~~~F~giaLtDtf~~~ 924 (1518)
T COG4889 845 QSVHILDPFTGTGTFIVRLLSALISDEDLKRKFQKELHAFEIVLLSYYIAAINIEQTAQNRDGDLKNFKGIALTDTFDYL 924 (1518)
T ss_pred CCeeeecCCCCccHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHhhhhcCCcccCCCceecchhhhh
Confidence 56789999999999976654421 0 1235566665555556666665431 1000000001222232221
Q ss_pred -------c-C----------CCCCeeEEEEcCCCccccCCc-----------------------------cchHHHHHHH
Q psy19 379 -------C-F----------KPACVDGIVTDLPFGKRVGSK-----------------------------SNNFLLYRLF 411 (494)
Q Consensus 379 -------~-~----------~~~~~D~IVtNPPYG~r~~~~-----------------------------~~~~~ly~~f 411 (494)
. | ..-.+-+||-||||...-.+. ..+.+-|-+.
T Consensus 925 Eed~~d~~~f~~n~erlkrq~~ipI~VIiGNPPYS~gqks~ndnn~nl~ypkLd~rv~~sy~k~STA~nknsl~Dsyira 1004 (1518)
T COG4889 925 EEDTLDGDIFGYNNERLKRQKEIPIRVIIGNPPYSAGQKSENDNNQNLSYPKLDKRVYESYGKNSTATNKNSLRDSYIRA 1004 (1518)
T ss_pred ccccccccccCccHHHHHhhcCCceEEEeCCCCCcccccCcCccccccccchHHHHHHHHHhccchhhcccchHHHHHHH
Confidence 1 1 012578999999995332111 1133445555
Q ss_pred HHHHhhcccCCCcEEEEEec
Q psy19 412 LIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 412 L~~l~rvLkpg~G~lvllt~ 431 (494)
++-+...++.+ |.+.+++.
T Consensus 1005 ~RwasDri~d~-GVigFV~N 1023 (1518)
T COG4889 1005 IRWASDRIKDN-GVIGFVVN 1023 (1518)
T ss_pred HHHHhhhcccC-ceEEEEec
Confidence 56666678888 98888876
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.16 Score=50.75 Aligned_cols=129 Identities=19% Similarity=0.267 Sum_probs=73.0
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccC-------------CCC---c-------cc
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSG-------------NLN---R-------EL 366 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~-------------~~~---~-------~~ 366 (494)
..|.++||+|||.-...+-.|..| ...|+..|..+...+..++=++.-+. ... . ..
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 457899999999955544444443 24688999988877655543332210 000 0 01
Q ss_pred ce-eeeeecccccc-CCC-----CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec--------
Q psy19 367 KV-SPLVCNVRQLC-FKP-----ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS-------- 431 (494)
Q Consensus 367 ~i-~~~~~Da~~l~-~~~-----~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~-------- 431 (494)
.| .++.+|+++.+ +.. ..+|+|++-- -+.....-.+-|...++.+.++|||| |.+++...
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~f----cLE~a~~d~~~y~~al~ni~~lLkpG-G~Lil~~~l~~t~Y~v 208 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSF----CLESACKDLDEYRRALRNISSLLKPG-GHLILAGVLGSTYYMV 208 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEES----SHHHH-SSHHHHHHHHHHHHTTEEEE-EEEEEEEESS-SEEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhH----HHHHHcCCHHHHHHHHHHHHHHcCCC-cEEEEEEEcCceeEEE
Confidence 12 36778888763 322 2499998821 11111112456999999999999999 98876422
Q ss_pred ----------CHHHHHHHHHhcc
Q psy19 432 ----------DRKHLIQALHITS 444 (494)
Q Consensus 432 ----------~~~~l~~~l~~~~ 444 (494)
+.+.+.+++.+.|
T Consensus 209 G~~~F~~l~l~ee~v~~al~~aG 231 (256)
T PF01234_consen 209 GGHKFPCLPLNEEFVREALEEAG 231 (256)
T ss_dssp TTEEEE---B-HHHHHHHHHHTT
T ss_pred CCEecccccCCHHHHHHHHHHcC
Confidence 4455667777665
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.51 Score=51.31 Aligned_cols=74 Identities=16% Similarity=0.169 Sum_probs=49.4
Q ss_pred CCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC----------
Q psy19 312 GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK---------- 381 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~---------- 381 (494)
.-+++|+|||.|++.+-+-... .-.+.++|+|+.|.+.-+.|..... ....+.+|+.++...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG-~~~v~a~Eid~~A~~TY~~N~~~~p-------~~~~~~~DI~~i~~~~~~~~~~~~~ 159 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIG-GQCVFTSEWNKHAVRTYKANWYCDP-------ATHRFNEDIRDITLSHKEGVSDEEA 159 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcC-CEEEEEEechHHHHHHHHHHcCCCC-------ccceeccChhhCccccccccchhhh
Confidence 4589999999999977654442 2356789999999999999853110 012334455444210
Q ss_pred -------CCCeeEEEEcCC
Q psy19 382 -------PACVDGIVTDLP 393 (494)
Q Consensus 382 -------~~~~D~IVtNPP 393 (494)
-..+|+++.-||
T Consensus 160 ~~~~~~~~p~~DvL~gGpP 178 (467)
T PRK10458 160 AEHIRQHIPDHDVLLAGFP 178 (467)
T ss_pred hhhhhccCCCCCEEEEcCC
Confidence 125899999999
|
|
| >PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.14 Score=50.39 Aligned_cols=40 Identities=23% Similarity=0.459 Sum_probs=29.0
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQ 352 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar 352 (494)
+..+++|||||+|.++..+.. ++..++..|+++..+...+
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~--~~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQ--PGKRVIINDINPDLINFWK 59 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC-----SSEEEEEES-HHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhcc--cccceeeeechHHHHHHHH
Confidence 678999999999999887654 3678999999998776665
|
There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B. |
| >KOG2798|consensus | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.33 Score=49.65 Aligned_cols=106 Identities=15% Similarity=0.078 Sum_probs=62.2
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHH--hccC------------------------C---
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVL--HNSG------------------------N--- 361 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~--~~g~------------------------~--- 361 (494)
....||-||||.|.++.+.|..+ -.+-|-+.+--|+-...--+. .... +
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G--~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLG--FKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhc--ccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 45689999999999999999883 455666776666544332221 1000 0
Q ss_pred ------CCcccceeeeeeccccccC---CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEE
Q psy19 362 ------LNRELKVSPLVCNVRQLCF---KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAI 427 (494)
Q Consensus 362 ------~~~~~~i~~~~~Da~~l~~---~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lv 427 (494)
.+..+...+-.||+.+.-. ..+.+|+|||. |. +.+..++. ..+..+..+|+|| |.-+
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTc--fF--IDTa~Nil----eYi~tI~~iLk~G-GvWi 293 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTC--FF--IDTAHNIL----EYIDTIYKILKPG-GVWI 293 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEE--EE--eechHHHH----HHHHHHHHhccCC-cEEE
Confidence 0000112234467776621 12479999997 44 33332322 4566899999998 7443
|
|
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.94 E-value=1.6 Score=43.45 Aligned_cols=131 Identities=14% Similarity=0.103 Sum_probs=86.9
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
.+++.+.++..+-..-..+++.. +.-.|||=-++-.+.. +.-++.+.++.|.-....+.|... ..++.+.
T Consensus 70 a~~lpa~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR--~qDRl~l~ELHp~D~~~L~~~f~~-------d~~vrv~ 139 (279)
T COG2961 70 AADLPAELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLR--EQDRLVLTELHPSDAPLLRNNFAG-------DRRVRVL 139 (279)
T ss_pred cCCchHHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcc--hhceeeeeecCccHHHHHHHHhCC-------CcceEEE
Confidence 46777777777655555556554 8889999755443332 356899999999999999988872 2356788
Q ss_pred eeccccc-----cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhccc--CCCcEEEEEec--CHHHHHHHHHh
Q psy19 372 VCNVRQL-----CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVR--PQIGRAILLTS--DRKHLIQALHI 442 (494)
Q Consensus 372 ~~Da~~l-----~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLk--pg~G~lvllt~--~~~~l~~~l~~ 442 (494)
++|-... |++ +.-.+|+.||||-..- -|.+++..+.+.++ ++ |..++=.| +...+.+.++.
T Consensus 140 ~~DG~~~l~a~LPP~-erRglVLIDPPfE~~~--------eY~rvv~~l~~~~kRf~~-g~yaiWYPik~r~~~~~f~~~ 209 (279)
T COG2961 140 RGDGFLALKAHLPPK-ERRGLVLIDPPFELKD--------EYQRVVEALAEAYKRFAT-GTYAIWYPIKDRRQIRRFLRA 209 (279)
T ss_pred ecCcHHHHhhhCCCC-CcceEEEeCCCccccc--------HHHHHHHHHHHHHHhhcC-ceEEEEEeecchHHHHHHHHH
Confidence 8885432 333 4678999999997431 27777777777776 44 76665444 44444444443
|
|
| >KOG2940|consensus | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.21 Score=49.05 Aligned_cols=115 Identities=17% Similarity=0.132 Sum_probs=73.4
Q ss_pred ccchHHHHHHHHHHh-CC-CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 293 TTLKPTIAYNMVRLA-SP-IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 293 a~L~e~lAa~ll~la-~~-~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
..+.+.++..++... +. +....++|+|||-|.+.--..... -.+++-.|.+..|++.++.--. . .-....
T Consensus 52 dylkeeig~rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qd-p------~i~~~~ 123 (325)
T KOG2940|consen 52 DYLKEEIGDRLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQD-P------SIETSY 123 (325)
T ss_pred hHHHHHHHHHHHHHHHHHhhhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCC-C------ceEEEE
Confidence 346677766665433 22 234579999999998865544432 2468899999999998875321 1 123456
Q ss_pred eeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCc
Q psy19 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIG 424 (494)
Q Consensus 371 ~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G 424 (494)
..+|-..+++.++++|+||+..--. ...+ .+..+.++...|||. |
T Consensus 124 ~v~DEE~Ldf~ens~DLiisSlslH----W~Nd----LPg~m~~ck~~lKPD-g 168 (325)
T KOG2940|consen 124 FVGDEEFLDFKENSVDLIISSLSLH----WTND----LPGSMIQCKLALKPD-G 168 (325)
T ss_pred Eecchhcccccccchhhhhhhhhhh----hhcc----CchHHHHHHHhcCCC-c
Confidence 7788888889889999999854311 0111 223333566677776 5
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.29 Score=49.37 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=38.9
Q ss_pred CCEEEEEcCCcChHHHHHHhcCCC-CeEEEEeCCHHHHHHHHHHHHh
Q psy19 312 GDVFLDPMCGGGTIPVECSLSYPH-TFFVCGDINEKLVLKTQANVLH 357 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~~~-~~v~G~Did~~al~~Ar~Nl~~ 357 (494)
..+|||.|||.||-+..+...|+. ..++++|.++.|++.++.-+..
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence 358999999999998888777873 4688999999999999986653
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.59 Score=43.70 Aligned_cols=107 Identities=23% Similarity=0.282 Sum_probs=65.7
Q ss_pred CCcChHHHHHHh--cCC-CCeEEEE--eCCHHHHHHHH---HHHHhccCCCCcccceeeeeecccccc--C--CCCCeeE
Q psy19 320 CGGGTIPVECSL--SYP-HTFFVCG--DINEKLVLKTQ---ANVLHNSGNLNRELKVSPLVCNVRQLC--F--KPACVDG 387 (494)
Q Consensus 320 CGSGtilIEAA~--~~~-~~~v~G~--Did~~al~~Ar---~Nl~~~g~~~~~~~~i~~~~~Da~~l~--~--~~~~~D~ 387 (494)
+|-|-|+..+++ ... ...+++. |...+.++... .|+....- .+. .-+...|+..+. + ....||.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~-~g~---~V~~~VDat~l~~~~~~~~~~FDr 78 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRE-LGV---TVLHGVDATKLHKHFRLKNQRFDR 78 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhh-cCC---ccccCCCCCcccccccccCCcCCE
Confidence 566766555443 333 4455555 65555555443 66664421 111 124556888873 2 3468999
Q ss_pred EEEcCCCcc-ccCC-c---cchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 388 IVTDLPFGK-RVGS-K---SNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 388 IVtNPPYG~-r~~~-~---~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
||.|-|.-. .... . ..+..|...|++.+..+|+++ |.+.|-..
T Consensus 79 IiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~-G~IhVTl~ 126 (166)
T PF10354_consen 79 IIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPD-GEIHVTLK 126 (166)
T ss_pred EEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEeC
Confidence 999999642 1111 1 134678999999999999998 98877543
|
|
| >KOG1596|consensus | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.71 Score=45.66 Aligned_cols=119 Identities=14% Similarity=0.165 Sum_probs=76.7
Q ss_pred ccchHHHHHHHHHH---hCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccce
Q psy19 293 TTLKPTIAYNMVRL---ASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKV 368 (494)
Q Consensus 293 a~L~e~lAa~ll~l---a~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i 368 (494)
.|.+..||++++-= ...++|..||=+++++||..-...-. .|...||+++.++..=+.. .|+... ..+|
T Consensus 135 nPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL-~nmAkk------RtNi 207 (317)
T KOG1596|consen 135 NPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDL-INMAKK------RTNI 207 (317)
T ss_pred ChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHH-HHHhhc------cCCc
Confidence 46889999998643 23589999999999999986655443 5667899999987653222 222211 1234
Q ss_pred eeeeeccccccC---CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 369 SPLVCNVRQLCF---KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 369 ~~~~~Da~~l~~---~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
-.+..|++.... --+.+|+|++|-|--.. .+.+.-.+..+||+| |.+++.
T Consensus 208 iPIiEDArhP~KYRmlVgmVDvIFaDvaqpdq----------~RivaLNA~~FLk~g-Ghfvis 260 (317)
T KOG1596|consen 208 IPIIEDARHPAKYRMLVGMVDVIFADVAQPDQ----------ARIVALNAQYFLKNG-GHFVIS 260 (317)
T ss_pred eeeeccCCCchheeeeeeeEEEEeccCCCchh----------hhhhhhhhhhhhccC-CeEEEE
Confidence 566778886421 12478999998652211 111112366789999 887764
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.57 Score=46.59 Aligned_cols=74 Identities=19% Similarity=0.097 Sum_probs=48.9
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
.+..+|+|++||-=-+.+-.....+++.++|+|||..+++....-+...+. ...+...|...-+. ....|+.+
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~------~~~~~v~Dl~~~~~-~~~~DlaL 176 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV------PHDARVRDLLSDPP-KEPADLAL 176 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-------CEEEEEE-TTTSHT-TSEESEEE
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC------CcceeEeeeeccCC-CCCcchhh
Confidence 346899999999886666544444568999999999999999988887654 23456667665433 24677766
Q ss_pred E
Q psy19 390 T 390 (494)
Q Consensus 390 t 390 (494)
.
T Consensus 177 l 177 (251)
T PF07091_consen 177 L 177 (251)
T ss_dssp E
T ss_pred H
Confidence 5
|
|
| >KOG2912|consensus | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.15 Score=52.19 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=49.3
Q ss_pred EEEcCCcChHHHHHHh---cCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee--------ccccccCCCCC
Q psy19 316 LDPMCGGGTIPVECSL---SYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC--------NVRQLCFKPAC 384 (494)
Q Consensus 316 LDP~CGSGtilIEAA~---~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~--------Da~~l~~~~~~ 384 (494)
+|+|.|+ -.|+.+. ++ +...++.|+|...+.-|+.|+..+++ ...+.+++. |+... -++..
T Consensus 107 iDIgtga--sci~~llg~rq~-n~~f~~teidd~s~~~a~snV~qn~l----ss~ikvV~~~~~ktll~d~~~~-~~e~~ 178 (419)
T KOG2912|consen 107 IDIGTGA--SCIYPLLGARQN-NWYFLATEIDDMSFNYAKSNVEQNNL----SSLIKVVKVEPQKTLLMDALKE-ESEII 178 (419)
T ss_pred eeccCch--hhhHHhhhchhc-cceeeeeeccccccchhhcccccccc----ccceeeEEecchhhcchhhhcc-Cccce
Confidence 6885554 4555443 22 35789999999999999999998875 333444443 22221 11346
Q ss_pred eeEEEEcCCCccc
Q psy19 385 VDGIVTDLPFGKR 397 (494)
Q Consensus 385 ~D~IVtNPPYG~r 397 (494)
||..+|||||.+.
T Consensus 179 ydFcMcNPPFfe~ 191 (419)
T KOG2912|consen 179 YDFCMCNPPFFEN 191 (419)
T ss_pred eeEEecCCchhhc
Confidence 9999999998543
|
|
| >COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.17 Score=57.12 Aligned_cols=49 Identities=31% Similarity=0.432 Sum_probs=42.2
Q ss_pred hCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHh
Q psy19 307 ASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH 357 (494)
Q Consensus 307 a~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~ 357 (494)
..+..+..++|||+|-|+|++||+.+ |+.++++|.+|.+.-.-+..++.
T Consensus 86 ~~~~~~~~~lDPfAG~GSIPlEAlRL--G~~v~AvelnPvAylfLKavlEy 134 (875)
T COG1743 86 ETPFEGPKLLDPFAGGGSIPLEALRL--GLEVVAVELNPVAYLFLKAVLEY 134 (875)
T ss_pred cCcccCCcccccccCCCccchHHHhc--CceeEEEecccHHHHHHHHHHhc
Confidence 34556778999999999999999999 79999999999998887776653
|
|
| >KOG3178|consensus | Back alignment and domain information |
|---|
Probab=90.72 E-value=1.3 Score=45.92 Aligned_cols=97 Identities=18% Similarity=0.074 Sum_probs=68.0
Q ss_pred CCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEEc
Q psy19 312 GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTD 391 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtN 391 (494)
-...+|.|.|.|+++-.....+| .|-|++.|...+-.++.++. .|+ ..+-+|.+.- .| .-|+|++
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~-~gV--------~~v~gdmfq~-~P--~~daI~m- 242 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA-PGV--------EHVAGDMFQD-TP--KGDAIWM- 242 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc-CCc--------ceeccccccc-CC--CcCeEEE-
Confidence 47899999999999999988776 47889999998888888875 442 4556776554 33 2346665
Q ss_pred CCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 392 LPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 392 PPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
.++-.+ -..+-.-+||+....-|+|+ |.++++
T Consensus 243 ----kWiLhd-wtDedcvkiLknC~~sL~~~-GkIiv~ 274 (342)
T KOG3178|consen 243 ----KWILHD-WTDEDCVKILKNCKKSLPPG-GKIIVV 274 (342)
T ss_pred ----Eeeccc-CChHHHHHHHHHHHHhCCCC-CEEEEE
Confidence 232111 11222457888899999999 887774
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.25 E-value=0.66 Score=44.54 Aligned_cols=119 Identities=15% Similarity=0.069 Sum_probs=61.3
Q ss_pred HHHHhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCC----HHHHHHHHHHHHhccCCCCcccceeeeeecccc
Q psy19 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDIN----EKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ 377 (494)
Q Consensus 303 ll~la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did----~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~ 377 (494)
+|..+++++|.+|+|.-.|.|-+.--.+-. .|...|+++=-+ +......+.|..... ....+++.+..+...
T Consensus 40 ~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e---~~~aN~e~~~~~~~A 116 (238)
T COG4798 40 VLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAARE---PVYANVEVIGKPLVA 116 (238)
T ss_pred eeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhh---hhhhhhhhhCCcccc
Confidence 345678899999999999999886444332 344567766222 222233333332210 001122333334433
Q ss_pred ccCCCCCeeEEEEcCCCccccC---CccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 378 LCFKPACVDGIVTDLPFGKRVG---SKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 378 l~~~~~~~D~IVtNPPYG~r~~---~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+.. ....|++.++-=|..... ....... +.+++.+.|||| |.++++-
T Consensus 117 ~~~-pq~~d~~~~~~~yhdmh~k~i~~~~A~~----vna~vf~~LKPG-Gv~~V~d 166 (238)
T COG4798 117 LGA-PQKLDLVPTAQNYHDMHNKNIHPATAAK----VNAAVFKALKPG-GVYLVED 166 (238)
T ss_pred cCC-CCcccccccchhhhhhhccccCcchHHH----HHHHHHHhcCCC-cEEEEEe
Confidence 332 234555555444422110 0122333 444789999999 9877763
|
|
| >KOG2352|consensus | Back alignment and domain information |
|---|
Probab=89.87 E-value=3.6 Score=44.61 Aligned_cols=109 Identities=15% Similarity=0.134 Sum_probs=74.6
Q ss_pred EEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEEcCC
Q psy19 314 VFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLP 393 (494)
Q Consensus 314 ~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPP 393 (494)
+++-+|||---+....-.-+ ...|+-+|+++-+++.+..--.. ......+...|+..+.+++++||+||-= +
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~------~~~~~~~~~~d~~~l~fedESFdiVIdk-G 122 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAK------ERPEMQMVEMDMDQLVFEDESFDIVIDK-G 122 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhcccc------CCcceEEEEecchhccCCCcceeEEEec-C
Confidence 89999999987766654432 25699999999998887643211 1234578889999999999999988863 3
Q ss_pred CccccCCcc-chH--HHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 394 FGKRVGSKS-NNF--LLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 394 YG~r~~~~~-~~~--~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+...+-..+ +.. ..-...+.++.|+|++| |+...++.
T Consensus 123 tlDal~~de~a~~~~~~v~~~~~eVsrvl~~~-gk~~svtl 162 (482)
T KOG2352|consen 123 TLDALFEDEDALLNTAHVSNMLDEVSRVLAPG-GKYISVTL 162 (482)
T ss_pred ccccccCCchhhhhhHHhhHHHhhHHHHhccC-CEEEEEEe
Confidence 333332211 111 12335677899999999 98776655
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=89.57 E-value=1.8 Score=38.92 Aligned_cols=49 Identities=16% Similarity=-0.063 Sum_probs=43.3
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccC
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSG 360 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~ 360 (494)
.+.+|+|+|++.|.-+|..+++.. ..|++++.++...+..++|++.+.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GA-K~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGA-SFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCc-cEEEEeccCHHHHHHHHHHhhhhee
Confidence 567999999999999999998853 5799999999999999999997653
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.53 E-value=1.7 Score=43.02 Aligned_cols=99 Identities=21% Similarity=0.135 Sum_probs=64.6
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC--CCCeeE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK--PACVDG 387 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~--~~~~D~ 387 (494)
-+|.++||+|+-||+|.--+.... ...|+|+|.....+..--+|-. ..+.+...|++.+... .+..|+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d~---------rV~~~E~tN~r~l~~~~~~~~~d~ 147 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRNDP---------RVIVLERTNVRYLTPEDFTEKPDL 147 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcCC---------cEEEEecCChhhCCHHHcccCCCe
Confidence 478899999999999987666553 3689999987765544333211 1234555677766321 236889
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+++|--|-. ...+|..+..+++++ +.++.+.
T Consensus 148 ~v~DvSFIS-----------L~~iLp~l~~l~~~~-~~~v~Lv 178 (245)
T COG1189 148 IVIDVSFIS-----------LKLILPALLLLLKDG-GDLVLLV 178 (245)
T ss_pred EEEEeehhh-----------HHHHHHHHHHhcCCC-ceEEEEe
Confidence 999876531 224455678888887 6655543
|
|
| >KOG1562|consensus | Back alignment and domain information |
|---|
Probab=89.48 E-value=2.5 Score=43.17 Aligned_cols=117 Identities=14% Similarity=0.062 Sum_probs=79.5
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc--cCCCCCeeE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL--CFKPACVDG 387 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l--~~~~~~~D~ 387 (494)
...++|+=+|-|-|.++-|.++--.-..+.-.|||...++..++-+....... -..++.+.-+|-..+ ....+.||+
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy-~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGY-EGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhccc-CCCceEEEeccHHHHHHHhccCCceE
Confidence 34568999999999999887764212367888999999999998776532211 134678888897766 233579999
Q ss_pred EEEcCCCccccCCccchHHHH-HHHHHHHhhcccCCCcEEEEEecCH
Q psy19 388 IVTDLPFGKRVGSKSNNFLLY-RLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly-~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
||+|-- ........+| +.++..+.+.||++ |..+......
T Consensus 199 ii~dss-----dpvgpa~~lf~~~~~~~v~~aLk~d-gv~~~q~ec~ 239 (337)
T KOG1562|consen 199 IITDSS-----DPVGPACALFQKPYFGLVLDALKGD-GVVCTQGECM 239 (337)
T ss_pred EEEecC-----CccchHHHHHHHHHHHHHHHhhCCC-cEEEEeccee
Confidence 999631 1111223344 34677889999998 8776665443
|
|
| >KOG1501|consensus | Back alignment and domain information |
|---|
Probab=88.45 E-value=0.71 Score=49.19 Aligned_cols=73 Identities=12% Similarity=0.034 Sum_probs=55.6
Q ss_pred CEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC-CCCeeEEEE
Q psy19 313 DVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK-PACVDGIVT 390 (494)
Q Consensus 313 ~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~-~~~~D~IVt 390 (494)
.-|||+|+|||-++..|+.... -.+++++.-.-|...|+.-...+|. .++|++++.-..++... ....|++++
T Consensus 68 v~vLdigtGTGLLSmMAvraga-D~vtA~EvfkPM~d~arkI~~kng~----SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGA-DSVTACEVFKPMVDLARKIMHKNGM----SDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcC-CeEEeehhhchHHHHHHHHHhcCCC----ccceeeeccccceeeecCcchhhhhhH
Confidence 4699999999999999998863 4699999999999999999997765 56778877655555321 123555554
|
|
| >PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted | Back alignment and domain information |
|---|
Probab=87.46 E-value=1.5 Score=43.63 Aligned_cols=97 Identities=14% Similarity=0.135 Sum_probs=52.8
Q ss_pred EEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc-----cCCCCCeeEEEE
Q psy19 316 LDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-----CFKPACVDGIVT 390 (494)
Q Consensus 316 LDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-----~~~~~~~D~IVt 390 (494)
+....||=.|+.. ..-+.-+.+.+|+++...+.-+.|+.. ..++.+.+.|.... |+ ...-.+|+.
T Consensus 62 l~~YPGSP~ia~~--llR~qDrl~l~ELHp~d~~~L~~~~~~-------~~~v~v~~~DG~~~l~allPP-~~rRglVLI 131 (245)
T PF04378_consen 62 LRFYPGSPAIAAR--LLREQDRLVLFELHPQDFEALKKNFRR-------DRRVRVHHRDGYEGLKALLPP-PERRGLVLI 131 (245)
T ss_dssp --EEE-HHHHHHH--HS-TTSEEEEE--SHHHHHHHTTS--T-------TS-EEEE-S-HHHHHHHH-S--TTS-EEEEE
T ss_pred cCcCCCCHHHHHH--hCCccceEEEEecCchHHHHHHHHhcc-------CCccEEEeCchhhhhhhhCCC-CCCCeEEEE
Confidence 5566677655444 333467899999999999999888763 23578899997653 33 356889999
Q ss_pred cCCCccccCCccchHHHHHHHHHHHhhccc--CCCcEEEEEec
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVR--PQIGRAILLTS 431 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l~rvLk--pg~G~lvllt~ 431 (494)
||||-... + |.+++..+...++ +. |.+++=.|
T Consensus 132 DPpYE~~~----d----y~~v~~~l~~a~kR~~~-G~~~iWYP 165 (245)
T PF04378_consen 132 DPPYEQKD----D----YQRVVDALAKALKRWPT-GVYAIWYP 165 (245)
T ss_dssp -----STT----H----HHHHHHHHHHHHHH-TT-SEEEEEEE
T ss_pred CCCCCCch----H----HHHHHHHHHHHHHhcCC-cEEEEEee
Confidence 99997542 2 6666666666666 55 76555333
|
; PDB: 2OO3_A. |
| >KOG2360|consensus | Back alignment and domain information |
|---|
Probab=86.34 E-value=1.7 Score=45.78 Aligned_cols=85 Identities=13% Similarity=0.046 Sum_probs=64.7
Q ss_pred HHhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC--
Q psy19 305 RLASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK-- 381 (494)
Q Consensus 305 ~la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~-- 381 (494)
.++.+.+|..|+|+||--|.=.+-.|... +...++|+|.+..-++..+.-+..+|++ .+....+|+...+.+
T Consensus 207 ~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~-----~~~~~~~df~~t~~~~~ 281 (413)
T KOG2360|consen 207 HLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVS-----IVESVEGDFLNTATPEK 281 (413)
T ss_pred hhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCC-----ccccccccccCCCCccc
Confidence 45677788999999999997666655543 3578999999999999999999988862 245558888775221
Q ss_pred CCCeeEEEEcCCC
Q psy19 382 PACVDGIVTDLPF 394 (494)
Q Consensus 382 ~~~~D~IVtNPPY 394 (494)
-..+-.|++||+-
T Consensus 282 ~~~v~~iL~Dpsc 294 (413)
T KOG2360|consen 282 FRDVTYILVDPSC 294 (413)
T ss_pred ccceeEEEeCCCC
Confidence 1357799999995
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.87 E-value=4.2 Score=42.38 Aligned_cols=97 Identities=15% Similarity=0.097 Sum_probs=60.1
Q ss_pred HHhCCCCCCEEEEEcCC-cChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee-ccccccCCC
Q psy19 305 RLASPIPGDVFLDPMCG-GGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC-NVRQLCFKP 382 (494)
Q Consensus 305 ~la~~~~g~~VLDP~CG-SGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~-Da~~l~~~~ 382 (494)
..++.+||+.|+=.|+| .|.+++..|... +++|+++|++++-.+.|++--.. .++.+ |....+.-.
T Consensus 160 k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~lGAd-----------~~i~~~~~~~~~~~~ 227 (339)
T COG1064 160 KKANVKPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKLGAD-----------HVINSSDSDALEAVK 227 (339)
T ss_pred hhcCCCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHhCCc-----------EEEEcCCchhhHHhH
Confidence 34556789998888877 456667766633 58999999999999888864221 12221 221111111
Q ss_pred CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 383 ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 383 ~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+.+|+||.--| .. -+....+.|+++ |+++++
T Consensus 228 ~~~d~ii~tv~-------~~--------~~~~~l~~l~~~-G~~v~v 258 (339)
T COG1064 228 EIADAIIDTVG-------PA--------TLEPSLKALRRG-GTLVLV 258 (339)
T ss_pred hhCcEEEECCC-------hh--------hHHHHHHHHhcC-CEEEEE
Confidence 24898887322 11 122466788888 988876
|
|
| >KOG2782|consensus | Back alignment and domain information |
|---|
Probab=85.64 E-value=0.81 Score=44.62 Aligned_cols=76 Identities=13% Similarity=0.065 Sum_probs=63.6
Q ss_pred cccccccc----ccccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHH
Q psy19 281 SLHRRNIV----EFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVL 356 (494)
Q Consensus 281 sL~~Rgy~----~~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~ 356 (494)
.+.-|+|+ ...++|--|.+....+....+.+|.+.+|.--|+|+..-......+...+++.|.||-|-+.|+--..
T Consensus 9 k~r~~~~~~a~~d~~~~~HVPVm~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~ 88 (303)
T KOG2782|consen 9 KRRTRGYELADGDEVPSSHVPVMLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSD 88 (303)
T ss_pred hhhccceeecccccccccCCceehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhH
Confidence 34445664 34588888899999999999999999999999999998888887788899999999999999987663
|
|
| >KOG3943|consensus | Back alignment and domain information |
|---|
Probab=85.00 E-value=2.5 Score=41.55 Aligned_cols=59 Identities=19% Similarity=0.131 Sum_probs=46.6
Q ss_pred ceEEEEEEEEecCcccChHHHHHHHHHHHHhhc-CCCCCCCCCCEEEEEEEecCcceecc
Q psy19 217 LLKFRVTCNRVGKHTVTSMESERAFGGKLNDTY-FWLVDLDDYDIDINLQIRYNEAYVGL 275 (494)
Q Consensus 217 ~~tFrV~~~~~g~~~~~s~~~~~~v~~aI~d~~-~~~vdl~~pdi~i~v~l~~~~~~l~l 275 (494)
..+|.|...+.+..+.+.+++-+.|-++++.-- ..+|||+|||++|.|.+....+.+++
T Consensus 202 ~~tf~VE~k~RNn~~v~r~~vi~~V~~~Vc~l~se~~VdL~n~D~t~~Ve~~ks~I~~~V 261 (291)
T KOG3943|consen 202 KGTFQVEYKSRNNSHVNREEVIREVAGIVCTLNSENKVDLTNPDYTVVVEIIKAVICLSV 261 (291)
T ss_pred CceEEEEEEeccccchhHHHHHHHHHHHHHhcCccceeeccCCCeEEEEEeeeceeeeee
Confidence 369999999988666888888888888887532 34899999999999999876555443
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.41 E-value=10 Score=38.90 Aligned_cols=100 Identities=13% Similarity=0.134 Sum_probs=55.0
Q ss_pred HHhCCCCCCEEEEEcCCcChHHHHH---HhcCCCC-eEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC
Q psy19 305 RLASPIPGDVFLDPMCGGGTIPVEC---SLSYPHT-FFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380 (494)
Q Consensus 305 ~la~~~~g~~VLDP~CGSGtilIEA---A~~~~~~-~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~ 380 (494)
..+...++++|+=.|| |.++..+ |+.. ++ .|+++|.+++.++.|++ .|.. ..+.....|+.++..
T Consensus 163 ~~~~~~~g~~VlV~G~--G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~~a~~----lGa~----~vi~~~~~~~~~~~~ 231 (343)
T PRK09880 163 HQAGDLQGKRVFVSGV--GPIGCLIVAAVKTL-GAAEIVCADVSPRSLSLARE----MGAD----KLVNPQNDDLDHYKA 231 (343)
T ss_pred HhcCCCCCCEEEEECC--CHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHHH----cCCc----EEecCCcccHHHHhc
Confidence 3344557888887665 5555444 4332 45 68999999998888765 2321 111111112222211
Q ss_pred CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
..+.+|+|+- ..+.. ..+..+.+.|+++ |+++++.
T Consensus 232 ~~g~~D~vid------~~G~~--------~~~~~~~~~l~~~-G~iv~~G 266 (343)
T PRK09880 232 EKGYFDVSFE------VSGHP--------SSINTCLEVTRAK-GVMVQVG 266 (343)
T ss_pred cCCCCCEEEE------CCCCH--------HHHHHHHHHhhcC-CEEEEEc
Confidence 1234787765 22321 1233567789999 9988864
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=84.04 E-value=4.9 Score=45.56 Aligned_cols=127 Identities=13% Similarity=0.104 Sum_probs=77.4
Q ss_pred CCCEEEEEcCCcChHHHHHHhcC-------C-----CCeEEEEeCCH---HHHHHHHHH-----------HHh-----cc
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSY-------P-----HTFFVCGDINE---KLVLKTQAN-----------VLH-----NS 359 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~-------~-----~~~v~G~Did~---~al~~Ar~N-----------l~~-----~g 359 (494)
..-+|+|.|=|+|.-.+.+...| + ..+++++|.+| +.+..+..+ +.. .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34689999999998666665555 2 25789999765 333332211 111 11
Q ss_pred CC-CCc-c--cceeeeeeccccc-cCCCCCeeEEEEcCCCccccCCccchHHHH-HHHHHHHhhcccCCCcEEEEEecCH
Q psy19 360 GN-LNR-E--LKVSPLVCNVRQL-CFKPACVDGIVTDLPFGKRVGSKSNNFLLY-RLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 360 ~~-~~~-~--~~i~~~~~Da~~l-~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly-~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
+. ... . -.+++..+|+.+. +--...+|++..|+ |.-.. +.+++ ..++..++++++|| |.++-.|...
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~-FsP~~-----np~~W~~~~~~~l~~~~~~~-~~~~t~t~a~ 209 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDG-FAPAK-----NPDMWSPNLFNALARLARPG-ATLATFTSAG 209 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCC-CCCcc-----ChhhccHHHHHHHHHHhCCC-CEEEEeehHH
Confidence 10 000 0 1345777898765 21125699999996 22111 12222 35777899999999 9988887765
Q ss_pred HHHHHHHHhccc
Q psy19 434 KHLIQALHITSA 445 (494)
Q Consensus 434 ~~l~~~l~~~~~ 445 (494)
. +++.+...|+
T Consensus 210 ~-vr~~l~~~GF 220 (662)
T PRK01747 210 F-VRRGLQEAGF 220 (662)
T ss_pred H-HHHHHHHcCC
Confidence 4 7888888774
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=83.87 E-value=1.6 Score=38.00 Aligned_cols=47 Identities=19% Similarity=0.083 Sum_probs=30.9
Q ss_pred HHHHHHHHHhC----CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHH
Q psy19 298 TIAYNMVRLAS----PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEK 346 (494)
Q Consensus 298 ~lAa~ll~la~----~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~ 346 (494)
.+|+.++.|=. ..+...++|+|||.|-+.--+.+. |..-+|+|.-.+
T Consensus 41 aIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~R~R 91 (112)
T PF07757_consen 41 AIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDARRR 91 (112)
T ss_pred HHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhC--CCCccccccccc
Confidence 45666655432 223457999999999776655555 566788887543
|
; GO: 0008168 methyltransferase activity |
| >COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=83.41 E-value=1.7 Score=49.39 Aligned_cols=49 Identities=12% Similarity=0.255 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhcccCCCcEEEEEecCH-----HHHHHH-HHhccccceeeeeEEEc
Q psy19 405 FLLYRLFLIEIGKIVRPQIGRAILLTSDR-----KHLIQA-LHITSALWKCRKQIKIN 456 (494)
Q Consensus 405 ~~ly~~fL~~l~rvLkpg~G~lvllt~~~-----~~l~~~-l~~~~~l~~~~~~~~v~ 456 (494)
..++..+++.+..+|+++ |+++.+.++. ..+.++ .++.| +...+.+++.
T Consensus 564 e~l~~~a~~~~rEll~dd-g~lv~y~ahk~~eaW~tlveA~~Rrag--l~iTr~~pv~ 618 (875)
T COG1743 564 ENLFREAFQAVRELLKDD-GRLVTYYAHKAPEAWITLVEAGWRRAG--LQITRAWPVR 618 (875)
T ss_pred HHHHHHHHHHHHHhcCCC-CeEEEEEeccCccchHHHHHHHhhhcC--ceeecccccc
Confidence 356777888999999998 9999875532 234444 55544 3555555553
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=82.77 E-value=2.4 Score=41.06 Aligned_cols=100 Identities=10% Similarity=0.024 Sum_probs=49.3
Q ss_pred CEEEEEcCCcChHHHHHHhc----CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc----C----
Q psy19 313 DVFLDPMCGGGTIPVECSLS----YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC----F---- 380 (494)
Q Consensus 313 ~~VLDP~CGSGtilIEAA~~----~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~----~---- 380 (494)
+.|++.|.-.|+-++-.|.+ .+.++|+|+||+........... . +...+|+++++|..+.. .
T Consensus 34 d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~--h----p~~~rI~~i~Gds~d~~~~~~v~~~~ 107 (206)
T PF04989_consen 34 DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIES--H----PMSPRITFIQGDSIDPEIVDQVRELA 107 (206)
T ss_dssp SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----------TTEEEEES-SSSTHHHHTSGSS-
T ss_pred CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhh--c----cccCceEEEECCCCCHHHHHHHHHhh
Confidence 58999999998877766654 25689999999765543322221 1 23467899999987652 1
Q ss_pred CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
......+||-|- .-..... . .-|+....++.+| +.+++
T Consensus 108 ~~~~~vlVilDs-----~H~~~hv---l-~eL~~y~plv~~G-~Y~IV 145 (206)
T PF04989_consen 108 SPPHPVLVILDS-----SHTHEHV---L-AELEAYAPLVSPG-SYLIV 145 (206)
T ss_dssp ---SSEEEEESS---------SSH---H-HHHHHHHHT--TT--EEEE
T ss_pred ccCCceEEEECC-----CccHHHH---H-HHHHHhCccCCCC-CEEEE
Confidence 112445777652 1111222 2 2233477789998 76554
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=81.78 E-value=1.7 Score=43.54 Aligned_cols=75 Identities=13% Similarity=0.201 Sum_probs=47.3
Q ss_pred eeeeeccccc--cCCCCCeeEEEEcCCCccccCC--------ccchH----------HH-HHHHHHHHhhcccCCCcEEE
Q psy19 369 SPLVCNVRQL--CFKPACVDGIVTDLPFGKRVGS--------KSNNF----------LL-YRLFLIEIGKIVRPQIGRAI 427 (494)
Q Consensus 369 ~~~~~Da~~l--~~~~~~~D~IVtNPPYG~r~~~--------~~~~~----------~l-y~~fL~~l~rvLkpg~G~lv 427 (494)
.+.++|+... ..++.++|+|+++|||...... ..+.. .. ....+.+..++|+++ |.++
T Consensus 18 ~i~~~d~~~~l~~~~~~svDli~tdppy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvl~~~-~~~~ 96 (302)
T COG0863 18 KIYKGDCLEILKSLPENSVDLIFTDPPYNNVKAGRKLGFLKRWLDAWDGWDSRGIYLKFILLQWLAEQKRVLKPG-GSLY 96 (302)
T ss_pred heecchHHHHHhhccccceeEEEcCCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHHhhheecCC-CEEE
Confidence 5777888654 3455699999999999654321 00111 11 234567888999999 9888
Q ss_pred EEecCH--HHHHHHHHhcc
Q psy19 428 LLTSDR--KHLIQALHITS 444 (494)
Q Consensus 428 llt~~~--~~l~~~l~~~~ 444 (494)
+..+.. ..+...+...|
T Consensus 97 v~~~~~~~~~~~~~~~~~g 115 (302)
T COG0863 97 VIDPFSNLARIEDIAKKLG 115 (302)
T ss_pred EECCchhhhHHHHHHHhCC
Confidence 877642 33455555544
|
|
| >KOG0822|consensus | Back alignment and domain information |
|---|
Probab=80.64 E-value=3.3 Score=45.36 Aligned_cols=102 Identities=20% Similarity=0.192 Sum_probs=71.0
Q ss_pred CCEEEEEcCCcChHHHHH---Hhc-CCCCeEEEEeCCHHHHHHHHH-HHHhccCCCCcccceeeeeeccccccCCCCCee
Q psy19 312 GDVFLDPMCGGGTIPVEC---SLS-YPHTFFVCGDINEKLVLKTQA-NVLHNSGNLNRELKVSPLVCNVRQLCFKPACVD 386 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEA---A~~-~~~~~v~G~Did~~al~~Ar~-Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D 386 (494)
..+|+=.|+|-|-+.-.. |.+ .....+++++.+|.|+-..+. |.+ ....+++++.+|.+.++.+....|
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~------~W~~~Vtii~~DMR~w~ap~eq~D 441 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFE------CWDNRVTIISSDMRKWNAPREQAD 441 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchh------hhcCeeEEEeccccccCCchhhcc
Confidence 456888999999875432 222 335789999999999866543 333 235678999999999975557899
Q ss_pred EEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEE
Q psy19 387 GIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRA 426 (494)
Q Consensus 387 ~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~l 426 (494)
++|+.. +|+..++ +|=+.-|..+.++|||. |..
T Consensus 442 I~VSEL-----LGSFGDN-ELSPECLDG~q~fLkpd-gIs 474 (649)
T KOG0822|consen 442 IIVSEL-----LGSFGDN-ELSPECLDGAQKFLKPD-GIS 474 (649)
T ss_pred chHHHh-----hccccCc-cCCHHHHHHHHhhcCCC-ceE
Confidence 999853 4443332 34456666789999998 743
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=80.36 E-value=4.9 Score=45.40 Aligned_cols=102 Identities=18% Similarity=0.126 Sum_probs=62.2
Q ss_pred EEEEEcCCcChHHHHH---Hhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCC----CcccceeeeeeccccccCCC---
Q psy19 314 VFLDPMCGGGTIPVEC---SLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNL----NRELKVSPLVCNVRQLCFKP--- 382 (494)
Q Consensus 314 ~VLDP~CGSGtilIEA---A~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~----~~~~~i~~~~~Da~~l~~~~--- 382 (494)
+|+=.|+|-|-+.-.+ +.. .-..+|+++|.|+.++...+.+......-. -..+.|+++..|.+.+..+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999875433 222 224689999999776655555543211110 01356899999999984321
Q ss_pred --------CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccC
Q psy19 383 --------ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRP 421 (494)
Q Consensus 383 --------~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkp 421 (494)
+.+|+||+-. +|+-.++ +|-..-|..+.+.||+
T Consensus 783 s~~~P~~~gKaDIVVSEL-----LGSFGDN-ELSPECLDGaQrfLKd 823 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSEL-----LGSLGDN-ELSPECLEAFHAQLED 823 (1072)
T ss_pred cccccccccccceehHhh-----hcccccc-cCCHHHHHHHHHhhhh
Confidence 2689999853 4443332 3344455556666664
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 494 | ||||
| 3tma_A | 354 | Crystal Structure Of Trmn From Thermus Thermophilus | 7e-21 | ||
| 3tlj_A | 373 | Crystal Structure Of Trm14 From Pyrococcus Furiosus | 2e-13 | ||
| 3v97_A | 703 | Crystal Structure Of Bifunctional Methyltransferase | 2e-06 | ||
| 3v8v_A | 702 | Crystal Structure Of Bifunctional Methyltransferase | 2e-06 | ||
| 3k0b_A | 393 | Crystal Structure Of A Predicted N6-Adenine-Specifi | 6e-04 |
| >pdb|3TMA|A Chain A, Crystal Structure Of Trmn From Thermus Thermophilus Length = 354 | Back alignment and structure |
|
| >pdb|3TLJ|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In Complex With S- Adenosyl-L-Homocysteine Length = 373 | Back alignment and structure |
|
| >pdb|3V97|A Chain A, Crystal Structure Of Bifunctional Methyltransferase Ycby (Rlmlk) From Escherichia Coli, Sah Binding Length = 703 | Back alignment and structure |
|
| >pdb|3V8V|A Chain A, Crystal Structure Of Bifunctional Methyltransferase Ycby (Rlmlk) From Escherichia Coli, Sam Binding Length = 702 | Back alignment and structure |
|
| >pdb|3K0B|A Chain A, Crystal Structure Of A Predicted N6-Adenine-Specific Dna Methylase From Listeria Monocytogenes Str. 4b F2365 Length = 393 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354 | Back alignment and structure |
|---|
Score = 208 bits (530), Expect = 6e-63
Identities = 79/252 (31%), Positives = 115/252 (45%), Gaps = 10/252 (3%)
Query: 219 KFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVT 278
FRV R G+H TS E ER G L+ Y VDL + + + +R EA++G+ +T
Sbjct: 111 SFRVEARREGEHPFTSPEVERRVGEALHRAYGVPVDLKRPAVRVRVDVRGEEAFLGVQLT 170
Query: 279 QTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVE-CSLSYPHTF 337
+ L RR +L P +A ++RLA PG LDP G GTI +E S P +
Sbjct: 171 ERPLSRRFPKAALRGSLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSP 230
Query: 338 FVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKR 397
GD++EK + + L + L+ + L + R L VD I+ + P G R
Sbjct: 231 VYAGDLDEKRLGLAREAALAS--GLSW---IRFLRADARHLPRFFPEVDRILANPPHGLR 285
Query: 398 VGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINM 457
+G K F LY FL ++ P GR LLT L +AL + R +
Sbjct: 286 LGRKEGLFHLYWDFLRGALALLPPG-GRVALLTLRPALLKRAL---PPGFALRHARVVEQ 341
Query: 458 SGMKSFVFILNR 469
G+ VF+L +
Sbjct: 342 GGVYPRVFVLEK 353
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 2/77 (2%)
Query: 8 STAQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVK-E 66
S + +EAT G ED+++EE + + + + I + +
Sbjct: 11 SGLVPRGSHMWLEATTHPGLEDLLLEELSALYPGEGAEVD-ARKGRVRIPRAWVGEEALG 69
Query: 67 LRGIDNILFIIATFENF 83
LR +++ A
Sbjct: 70 LRLAHHLVLFRARLLLS 86
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* Length = 373 | Back alignment and structure |
|---|
Score = 177 bits (450), Expect = 4e-51
Identities = 63/258 (24%), Positives = 110/258 (42%), Gaps = 16/258 (6%)
Query: 219 KFRVTCNRVGKHTVTSMESERAFGG----KLNDTYFWLVDLDDYDIDINLQIRYNEAYVG 274
F V R G H +TS++ R G +L+ LV+LD + ++ + ++G
Sbjct: 120 TFAVRSFRKGDHNITSIDIARTVGEAIFERLSRFGTPLVNLDHPAVIFRAELIKDVFFLG 179
Query: 275 LPVT-QTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS 332
+ T +SLH+R V + LK +IA M+ LA + G LDPMCG GTI +E +L
Sbjct: 180 IDTTGDSSLHKRPWRVYDHPAHLKASIANAMIELA-ELDGGSVLDPMCGSGTILIELALR 238
Query: 333 YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDL 392
+ + K ++ + N L K+ + + QL VD +++L
Sbjct: 239 RYSGEIIGIEKYRKHLIGAEMNAL----AAGVLDKIKFIQGDATQLSQYVDSVDFAISNL 294
Query: 393 PFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQ 452
P+G ++G KS LY F E+ K++ + T + I ++
Sbjct: 295 PYGLKIGKKSMIPDLYMKFFNELAKVLEK--RGVFITTEKKAI---EEAIAENGFEIIHH 349
Query: 453 IKINMSGMKSFVFILNRT 470
I G+ ++++
Sbjct: 350 RVIGHGGLMVHLYVVKLE 367
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* Length = 703 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 4e-13
Identities = 54/291 (18%), Positives = 101/291 (34%), Gaps = 65/291 (22%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R I +K T+A +V + P
Sbjct: 131 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 190
Query: 312 GDVFLDPMCGGGTIPVE------------------------------------------C 329
G LDPMCG GT+ +E
Sbjct: 191 GTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARK 250
Query: 330 SLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG-- 387
L+ + F D + +++ + + N +G + + V +V Q G
Sbjct: 251 GLAEYSSHFYGSDSDARVIQRARTNA-RLAG-IGELITFE--VKDVAQ--LTNPLPKGPY 304
Query: 388 --IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIG--RAILLTSDRKHLIQALHIT 443
++++ P+G+R+ S+ L+ +G+I++ Q G L ++ L+ L +
Sbjct: 305 GTVLSNPPYGERLDSEPALIALHS----LLGRIMKNQFGGWNLSLFSASPD-LLSCLQL- 358
Query: 444 SALWKCRKQIKINMSGMKSFVFILNRTADLFDYAIHGLKEKHKGKPFPPRK 494
+ KQ K + + D + E + + K
Sbjct: 359 ----RADKQYKAKNGPLDCVQKNYHVAESTPDSKPAMVAEDYTNRLRKNLK 405
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} Length = 393 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 7e-13
Identities = 46/225 (20%), Positives = 80/225 (35%), Gaps = 51/225 (22%)
Query: 251 WLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASP 309
+ + + I +E + + + LH+R + +K T+A +V L S
Sbjct: 140 GRLMETGALFKLEVSILKDEVTLTIDTSGAGLHKRGYRLAQGSAPIKETMAAALVLLTSW 199
Query: 310 IPGDVFLDPMCGGGTIPVECSL-------------------------------------S 332
P F DP+CG GTIP+E +L +
Sbjct: 200 HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLAN 259
Query: 333 YPHTFFVCG-DINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG-IVT 390
Y + G DI+ +L+ + N +G L + V F+ G +V
Sbjct: 260 YDQPLNIIGGDIDARLIEIAKQNA-VEAG-LGDLITFR--QLQVAD--FQTEDEYGVVVA 313
Query: 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIG-RAILLTSDRK 434
+ P+G+R+ + LYR E+G + + +LTS
Sbjct: 314 NPPYGERLEDEEAVRQLYR----EMGIVYKRMPTWSVYVLTSYEL 354
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} Length = 385 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 1e-12
Identities = 52/250 (20%), Positives = 94/250 (37%), Gaps = 57/250 (22%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
+ D I + I ++ + + T +LH+R + N ++ T+A ++ L
Sbjct: 136 LKEDKEKYPIFVFIHKDKVTISIDTTGDALHKRGYREKANKAPIRETLAAGLIYLTPWKA 195
Query: 312 GDVFLDPMCGGGTIPVECSL-------------------------------------SYP 334
G V +DPMCG GTI +E ++
Sbjct: 196 GRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNE 255
Query: 335 HTFFVCG-DINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG-IVTDL 392
F + G DI+E+ + + N +G ++ ++ + V + Q FK G I+T+
Sbjct: 256 SKFKIYGYDIDEESIDIARENA-EIAG-VDEYIEFN--VGDATQ--FKSEDEFGFIITNP 309
Query: 393 PFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIG-RAILLTSDRKHLIQALHITSALWKCRK 451
P+G+R+ K + LY+ E+G R L+TS K K
Sbjct: 310 PYGERLEDKDSVKQLYK----ELGYAFRKLKNWSYYLITSYED-FEYEFGQ-----KADK 359
Query: 452 QIKINMSGMK 461
+ K+ +K
Sbjct: 360 KRKLYNGMLK 369
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} Length = 384 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 6e-12
Identities = 51/293 (17%), Positives = 104/293 (35%), Gaps = 66/293 (22%)
Query: 219 KFRVTCNRVGKHTVTS-----MESERA----FGGKLNDTYFWLVDLDDYDIDINLQIRYN 269
+F V + K + + +++A + + + + I + + +
Sbjct: 92 QFPVAKAKSVKSKLHNEPSIQGITKKAIVKKLQHYFHRPDSVPLPENGPEFKIEISLLKD 151
Query: 270 EAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVE 328
+A V + T SL +R E +K +A ++ L++ P F+DP CG GT +E
Sbjct: 152 QARVMIDTTGPSLFKRGYRTEKGGAPIKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIE 211
Query: 329 CSL-------------------------------------SYPHTFFVCG-DINEKLVLK 350
++ Y + G D + ++V
Sbjct: 212 AAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEI 271
Query: 351 TQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG-IVTDLPFGKRVGSKSNNFLLYR 409
+ N G L +K+ ++ FK ++G ++++ P+G+R+ +LY
Sbjct: 272 ARKNA-REVG-LEDVVKLK--QMRLQD--FKTNKINGVLISNPPYGERLLDDKAVDILYN 325
Query: 410 LFLIEIGKIVRPQIG-RAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMK 461
E+G+ P +LT+D Q K K+ K+ +K
Sbjct: 326 ----EMGETFAPLKTWSQFILTNDTD-FEQKFGR-----KADKKRKLYNGSLK 368
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.5 bits (156), Expect = 5e-11
Identities = 63/380 (16%), Positives = 117/380 (30%), Gaps = 97/380 (25%)
Query: 144 EQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQ-IEKGDLQNQELKEIDINSMCS 202
E +Y DIL E C +VQ + K L +E+ I I S
Sbjct: 13 EHQYQYKDILSV-----FEDAFVDNFDC------KDVQDMPKSILSKEEIDHI-IMS--- 57
Query: 203 SQNQKTNFTNPEENLLK-FRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVD-LDDYDI 260
+ L+ F ++ + V ++ L Y +L+ +
Sbjct: 58 --------KDAVSGTLRLFWTLLSK-QEEMV-----QKFVEEVLRINYKFLMSPIKTEQR 103
Query: 261 DINL-QIRYNEAYVGLPVTQTSLHRRN--IVEFNITTLKPTIAYNMVRLA----SPIPGD 313
++ Y E + L+ N ++N++ L+P Y +R A P
Sbjct: 104 QPSMMTRMYIE-------QRDRLYNDNQVFAKYNVSRLQP---YLKLRQALLELRPAKN- 152
Query: 314 VFLDPMCGGG--TIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH--NSGNLNRELKVS 369
V +D + G G + ++ VC K+ K + N N N
Sbjct: 153 VLIDGVLGSGKTWVALD----------VCLS--YKVQCKMDFKI-FWLNLKNCNSP---E 196
Query: 370 PLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGK----IVR----P 421
++ +++L ++ +D ++ S L RL + + ++
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256
Query: 422 QIGRA------ILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLF- 474
+ A ILLT+ K + L + I ++ S + L
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAAT-----TTHISLDHH---SMTLTPDEVKSLLL 308
Query: 475 ---DYAIHGL-KEKHKGKPF 490
D L +E P
Sbjct: 309 KYLDCRPQDLPREVLTTNPR 328
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 5e-10
Identities = 69/532 (12%), Positives = 144/532 (27%), Gaps = 172/532 (32%)
Query: 26 GFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFIIATFENFGF 85
++D++ ++ F + D KD++ + I
Sbjct: 17 QYKDIL-SVFEDAFVDNF-------------DCKDVQD--MPKSI--------------L 46
Query: 86 SNKGTEEDSGQKDES-------DLLKDKLKD-VATIQNKVLEIDWKKYMEIWKQITN--- 134
S + + KD L K ++ V +VL I++K M K
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 135 --------YNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGD 186
LY + F KYN + R + + ++ +
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYN-VSRLQPYL---------------------KLRQAL 144
Query: 187 LQNQELKEIDINSM--CSSQNQKTNFTNPEENLLKFRVTCNRVGK-H--TVTSMESERAF 241
L+ + K + I+ + KT + L ++V C K + + S
Sbjct: 145 LELRPAKNVLIDGVLGSG----KTWVAL--DVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 242 GGKLNDTYFWLV--DLDDYDIDINLQIRYNEAYVGL------PVTQTSL------HRRNI 287
L + + D N+++R + L + L
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 288 VE-FN------ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVC 340
FN +TT + L++ + LD T
Sbjct: 259 WNAFNLSCKILLTTRFKQVTD---FLSAATTTHISLDHHSMTLT---------------- 299
Query: 341 GDINEKLVLKTQANVLHNS-GNLNRE-LKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRV 398
V L +L RE L +P ++ + DG+ T
Sbjct: 300 ----PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI----IAESIRDGLAT-------- 343
Query: 399 GSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQAL-------HITSA----LW 447
+N+ + ++ I+ + +L ++ + + L HI + +W
Sbjct: 344 ---WDNWK--HVNCDKLTTIIESSL--NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 448 KCRKQIKINMSGMKSFV--FILNRTADLFDYAIHGL-----------KEKHK 486
+ + M + ++ + +I + H+
Sbjct: 397 FDVIKSDV-MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 1e-08
Identities = 55/337 (16%), Positives = 106/337 (31%), Gaps = 75/337 (22%)
Query: 1 MDLH-K-LVSTAQSDEKQITIEATVVTGFEDVVVEECQEKFGKDL---LLMKSIGRVFFN 55
+L K L++T KQ+T + + ++ D LL+K + +
Sbjct: 262 FNLSCKILLTTRF---KQVT-DFLSAATTTHISLDHHSMTLTPDEVKSLLLK-----YLD 312
Query: 56 IDLKDIEKVKELRGIDNILF-IIA--------TFENFGFSN----KGTEEDSGQKDESDL 102
+D+ + E+ + IIA T++N+ N E S E
Sbjct: 313 CRPQDLPR--EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 103 LKDKLKDVA------TIQNKVLEIDWKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHK 156
+ ++ I +L + IW + + ++ + + +KY+ + +
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSL-------IWFDVIKSDVMV--VVNKLHKYSLVEKQP 421
Query: 157 KSIRNEIN---IKKESSCETEPQ-----VNNVQIEKGDLQNQELKEIDINSMCS------ 202
K I ++ + E E V++ I K + + S
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 203 -SQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDID 261
+ T L FR ++ +H T+ A G LN L L Y
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKI-RHDSTAWN---ASGSILNT----LQQLKFYKPY 533
Query: 262 INLQIRYNEAYVG-----LPVTQTSLHR---RNIVEF 290
I E V LP + +L +++
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
|
| >1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1 Length = 307 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 2e-08
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Query: 219 KFRVTCNRVGK-HTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYV---- 273
KFRVT R+ K + S+E + G + + VDL +YDI+I ++I +AY+
Sbjct: 108 KFRVTARRITKEFPLDSLEIQAKVGEYILNNENCEVDLKNYDIEIGIEIMQGKAYIYTEK 167
Query: 274 -----GLPVT 278
GLP+
Sbjct: 168 IKGWGGLPIG 177
|
| >2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1 Length = 413 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 6e-06
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 220 FRVTCNRVGKH-TVTSMESERAFGGKLNDTYFWL-VDLDDYDIDINLQIRYNEAYV 273
F++T +R KH + +ME GG + + + VD+ + D+++ ++IR +Y+
Sbjct: 116 FKITVHRSYKHFPMRTMELLPEIGGHILENTEDITVDVHNPDVNVRVEIRSGYSYI 171
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 494 | |||
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 100.0 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 100.0 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 100.0 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 100.0 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 100.0 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 100.0 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.74 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.7 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.69 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.69 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.67 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.65 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 99.64 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.64 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.64 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.63 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.63 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 99.62 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 99.62 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.62 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 99.61 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.61 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.61 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.61 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.59 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.58 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.58 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.57 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.57 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.56 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.56 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.56 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.55 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.55 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.55 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.54 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.53 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.53 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.53 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.52 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.51 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.51 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.51 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 99.51 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.51 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.5 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.5 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.49 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.49 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.49 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.49 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.48 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.48 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.48 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.48 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.48 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.48 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.47 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.47 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.47 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.46 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.46 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.46 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.45 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.45 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.45 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.45 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.45 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.45 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.44 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.44 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.43 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.43 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.43 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.43 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.43 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.42 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.42 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.41 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.41 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.41 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.41 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.4 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.4 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.4 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.4 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.4 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.4 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.4 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.39 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.39 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.39 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.39 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.39 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.39 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.39 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.38 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.38 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.38 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.38 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.38 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.37 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.37 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.37 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.37 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.37 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.36 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.36 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.36 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.36 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.35 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.35 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.35 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.35 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.35 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.35 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.34 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.34 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.34 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.34 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.34 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.33 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.33 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.33 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.33 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.33 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.32 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.32 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.32 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.32 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.31 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.31 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.3 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.3 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.3 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.3 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.3 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.3 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.3 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.3 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.29 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.29 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.29 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.29 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.29 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.29 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.28 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.28 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.28 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.28 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.28 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.28 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.27 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.27 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.27 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.27 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.27 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.26 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.26 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.26 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.26 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.26 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.25 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.25 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.25 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.25 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.25 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.24 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.24 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.24 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.24 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.24 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.24 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.23 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.23 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.23 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.23 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.23 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.22 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.22 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.22 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.22 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.22 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.21 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.21 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.21 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.21 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.2 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.2 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.2 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.2 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.2 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.2 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.2 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.2 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.19 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.19 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.19 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.18 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.18 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.18 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.18 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.16 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.16 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.15 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 99.15 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.15 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.15 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.15 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.14 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.14 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.14 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.14 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.14 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.14 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.14 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.13 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.13 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.13 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.13 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.12 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.12 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.12 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.11 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.1 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.1 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.1 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.09 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.08 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 99.07 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.06 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.05 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.05 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.04 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.04 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.04 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.03 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 99.03 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.03 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 99.02 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.02 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.02 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.02 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.0 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.0 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 99.0 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.97 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.97 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 98.95 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.95 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 98.94 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.94 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 98.93 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 98.93 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.92 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.92 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 98.87 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.86 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.85 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.8 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.78 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.77 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 98.76 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.76 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.75 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.73 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 98.72 | |
| 2dir_A | 98 | Thump domain-containing protein 1; structural geno | 98.72 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.71 | |
| 1vbk_A | 307 | Hypothetical protein PH1313; structural genomics, | 98.71 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.69 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.64 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.57 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.53 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.52 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.51 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.51 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.5 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.44 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.44 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.4 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 98.39 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.36 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 98.36 | |
| 2c5s_A | 413 | THII, probable thiamine biosynthesis protein THII; | 98.35 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 98.33 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.32 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.32 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.14 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.01 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.98 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 97.72 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.66 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.66 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 97.65 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.61 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.6 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.56 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 97.41 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.4 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.2 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 97.19 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 97.11 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.06 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.01 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 96.97 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 96.96 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 96.78 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 96.62 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 96.61 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 96.56 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 96.51 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 96.48 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 96.27 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 96.23 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 95.71 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 95.63 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 95.11 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 95.09 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 92.85 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 92.62 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 92.29 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 92.21 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 92.07 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 91.81 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 91.37 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 90.92 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 90.11 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 90.03 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 89.19 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 89.07 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 89.04 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 88.85 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 88.72 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 88.04 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 88.01 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 87.08 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 86.79 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 85.54 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 85.4 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 85.29 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 83.68 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 83.51 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 83.13 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 82.73 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 82.2 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 81.51 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 81.15 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 80.99 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 80.34 |
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-62 Score=509.64 Aligned_cols=325 Identities=20% Similarity=0.269 Sum_probs=283.0
Q ss_pred ceEEEEEEcCCChHHHHHHHHHHHhCCccceEEEcCeEEEEeChhhHHHHh-hhhhhhhhhhhhhcccccCCCCCCCccC
Q psy19 15 KQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVK-ELRGIDNILFIIATFENFGFSNKGTEED 93 (494)
Q Consensus 15 ~~~~~~~t~~~GlE~~~~~E~~~kl~~~~~~~~~~G~V~F~~~~~~~~~~~-~lR~a~rl~~~l~~~~~~~~~~~~~~~~ 93 (494)
+.++|||||++|||.+|++||++ ||. ++...+|+|+|+++++++|++| |||+|+||++++++|++.++
T Consensus 3 ~~~~~~a~~~~GlE~~la~El~~-lG~--~~~~~~g~V~f~gd~~~~~~~~l~~R~a~RVl~~l~~f~a~~~-------- 71 (384)
T 3ldg_A 3 KTFNLVATAAAGIEAVVGKELRN-LGL--DCQVENGRVLFKGNIETIAKSNLWLRSADRIKIVVGEFPARTF-------- 71 (384)
T ss_dssp CSEEEEEECCTTCHHHHHHHHHH-TTC--CCEEETTEEEEEECHHHHHHHHHHCSSCSEEEEEEEEEECSSH--------
T ss_pred ccEEEEEECChhHHHHHHHHHHh-CCC--CcEEeeeEEEEEECHHHHHHHHhhcccceeEEEEEEEEecCCH--------
Confidence 34899999999999999999999 997 6888999999999999999999 99999999999999876543
Q ss_pred CCCCcchhhHHhhhhhHHHHHHhhhccCchhhHHHhhhhhccCCCcCcchhhccchhhhhhhccccchhhcccccCccCc
Q psy19 94 SGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCET 173 (494)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~l~~~~~~~~W~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (494)
++ ||+.|+.++|+++|...
T Consensus 72 --------------~~---Ly~~~~~i~W~~~l~~~-------------------------------------------- 90 (384)
T 3ldg_A 72 --------------EE---LFQGVYALDWENYLPLG-------------------------------------------- 90 (384)
T ss_dssp --------------HH---HHHHHHHSCGGGTCCTT--------------------------------------------
T ss_pred --------------HH---HHHHHHcCCHHHhCCCC--------------------------------------------
Confidence 23 99999999999864421
Q ss_pred ccccccchhccccchhhhhhhhhhhcccccccccCCCCCCCCcceEEEE-EEEEecCcccChHHHHHHHHHHHHhhcCC-
Q psy19 174 EPQVNNVQIEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRV-TCNRVGKHTVTSMESERAFGGKLNDTYFW- 251 (494)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tFrV-~~~~~g~~~~~s~~~~~~v~~aI~d~~~~- 251 (494)
.||+| ++++.++|.|++.++++++|+||+|+++.
T Consensus 91 --------------------------------------------~tf~V~~~~~~~s~~~~s~~~~~~vkdAi~d~~~~~ 126 (384)
T 3ldg_A 91 --------------------------------------------CQFPVAKAKSVKSKLHNEPSIQGITKKAIVKKLQHY 126 (384)
T ss_dssp --------------------------------------------CBCCBCCCEEESCSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------CeEEEEeeeecCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 27999 88888889999999999999999998842
Q ss_pred -----C--CCCCCCCEEEEEEEecCcceeccccccccccccccc-ccccccchHHHHHHHHHHhCCCCCCEEEEEcCCcC
Q psy19 252 -----L--VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIV-EFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGG 323 (494)
Q Consensus 252 -----~--vdl~~pdi~i~v~l~~~~~~l~l~lsg~sL~~Rgy~-~~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSG 323 (494)
. ||+++||++|++++.+|.+++++|+||++||+|||+ ..++|||+|+||++|+.+++|+++.+|+|||||||
T Consensus 127 ~~~r~~~~v~~~~pd~~i~v~~~~~~~~~~ld~sg~~LhkRgyr~~~~~Apl~e~LAaall~l~~~~~~~~llDp~CGSG 206 (384)
T 3ldg_A 127 FHRPDSVPLPENGPEFKIEISLLKDQARVMIDTTGPSLFKRGYRTEKGGAPIKENMAAAIILLSNWFPDKPFVDPTCGSG 206 (384)
T ss_dssp TTCCTTSCCCCCSCBCEEEEEEETTEEEEEEESSSSCTTCCSCCCC---CCCCHHHHHHHHHHTTCCTTSCEEETTCTTS
T ss_pred hCCCCccccCCCCCCEEEEEEEECCEEEEEEeccCCcccccCcccCCCCCCCcHHHHHHHHHHhCCCCCCeEEEeCCcCC
Confidence 3 999999999999999999999999999999999997 56899999999999999999999999999999999
Q ss_pred hHHHHHHhcCCC--------------------------------------CeEEEEeCCHHHHHHHHHHHHhccCCCCcc
Q psy19 324 TIPVECSLSYPH--------------------------------------TFFVCGDINEKLVLKTQANVLHNSGNLNRE 365 (494)
Q Consensus 324 tilIEAA~~~~~--------------------------------------~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~ 365 (494)
||+||||++..+ ..++|+|+|+.|++.|++|+..+|+ .
T Consensus 207 t~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~Na~~~gl----~ 282 (384)
T 3ldg_A 207 TFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARKNAREVGL----E 282 (384)
T ss_dssp HHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTC----T
T ss_pred HHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHHHHHHcCC----C
Confidence 999999986322 4599999999999999999998875 4
Q ss_pred cceeeeeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHhccc
Q psy19 366 LKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSA 445 (494)
Q Consensus 366 ~~i~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~~~~ 445 (494)
+.+.+.++|+.+++.+ ..||+||+|||||.|++...++..+|+.+.+.+.+ .+| |+++++|++.. +.+.++
T Consensus 283 ~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~--~~g-~~~~iit~~~~-l~~~~g---- 353 (384)
T 3ldg_A 283 DVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAP--LKT-WSQFILTNDTD-FEQKFG---- 353 (384)
T ss_dssp TTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTT--CTT-SEEEEEESCTT-HHHHHT----
T ss_pred CceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhh--CCC-cEEEEEECCHH-HHHHhC----
Confidence 5689999999998765 58999999999999998877888888864333332 247 99999999987 566665
Q ss_pred cceeeeeEEEccCCceEEEEEEee
Q psy19 446 LWKCRKQIKINMSGMKSFVFILNR 469 (494)
Q Consensus 446 l~~~~~~~~v~~Ggl~~~i~v~~~ 469 (494)
++..+++.++||+++|++|.|.-
T Consensus 354 -~~~~~~~~l~nG~l~~~~~~~~~ 376 (384)
T 3ldg_A 354 -RKADKKRKLYNGSLKVDLYQFYG 376 (384)
T ss_dssp -SCCSEEEEEEETTEEEEEEEECC
T ss_pred -CCccceeEEecCCEEEEEEEEEC
Confidence 57889999999999999999863
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-60 Score=499.94 Aligned_cols=324 Identities=21% Similarity=0.294 Sum_probs=280.8
Q ss_pred eEEEEEEcCCChHHHHHHHHHHHhCCccceEEEcCeEEEEeChhhHHHHh-hhhhhhhhhhhhhcccccCCCCCCCccCC
Q psy19 16 QITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVK-ELRGIDNILFIIATFENFGFSNKGTEEDS 94 (494)
Q Consensus 16 ~~~~~~t~~~GlE~~~~~E~~~kl~~~~~~~~~~G~V~F~~~~~~~~~~~-~lR~a~rl~~~l~~~~~~~~~~~~~~~~~ 94 (494)
.++|+|||++|||.+|++||++ ||. .+...+|+|+|++++++++++| |||+|+|||+++++|++.++
T Consensus 14 ~~~~~at~~~GlE~~la~El~~-lG~--~v~~~~g~V~f~g~~~~~~r~~l~~R~a~RVl~~l~~f~a~~~--------- 81 (393)
T 3k0b_A 14 SFQLVATAASGLEAIVGKEVAR-LGY--DPKVENGKVYFEGDLSAIARANLWLRVADRVKIVVGVFKATTF--------- 81 (393)
T ss_dssp CEEEEEECCTTCHHHHHHHHHH-TTC--CCEEETTEEEEEECHHHHHHHHHHCSSCSCEEEEEEEEECSSH---------
T ss_pred ceEEEEECCccHHHHHHHHHHh-CCC--CcEEeccEEEEEECHHHHHHHHhcccceeeEEEEEEEEecCCH---------
Confidence 4799999999999999999999 986 6888999999999999999999 99999999999999876543
Q ss_pred CCCcchhhHHhhhhhHHHHHHhhhccCchhhHHHhhhhhccCCCcCcchhhccchhhhhhhccccchhhcccccCccCcc
Q psy19 95 GQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETE 174 (494)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~l~~~~~~~~W~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (494)
++ ||+.++.++|++++...
T Consensus 82 -------------~~---L~~~~~~i~w~~~l~~~--------------------------------------------- 100 (393)
T 3k0b_A 82 -------------DE---LFEKTKALPWEDYLPLD--------------------------------------------- 100 (393)
T ss_dssp -------------HH---HHHHHHTSCGGGTCCTT---------------------------------------------
T ss_pred -------------HH---HHHHHHhCCHHHhCCCC---------------------------------------------
Confidence 23 99999999999864321
Q ss_pred cccccchhccccchhhhhhhhhhhcccccccccCCCCCCCCcceEEEEEEEEecCcccChHHHHHHHHHHHHhhcC----
Q psy19 175 PQVNNVQIEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYF---- 250 (494)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tFrV~~~~~g~~~~~s~~~~~~v~~aI~d~~~---- 250 (494)
.||+|++++.++|.|++.++++++|+||+|+++
T Consensus 101 -------------------------------------------~tF~V~~~~~~s~~fss~~~~~~vkdAI~d~~~~~~~ 137 (393)
T 3k0b_A 101 -------------------------------------------AQFPVAGKSVKSTLYSVPDCQAIVKKAIVNRVSEKYR 137 (393)
T ss_dssp -------------------------------------------CBCCEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred -------------------------------------------CeEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHhhC
Confidence 279999999999999999999999999999874
Q ss_pred C--CCCCCCCCEEEEEEEecCcceeccccccccccccccc-ccccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHH
Q psy19 251 W--LVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIV-EFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPV 327 (494)
Q Consensus 251 ~--~vdl~~pdi~i~v~l~~~~~~l~l~lsg~sL~~Rgy~-~~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilI 327 (494)
. .||+++||++|++++.++.+++++|++|++||+|||+ ..++|||+|+||++|+.+++|.++.+|||||||||||+|
T Consensus 138 ~rp~vd~~~Pd~~i~v~l~~~~~~~~ld~sg~~L~krgyr~~~~~Apl~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~i 217 (393)
T 3k0b_A 138 RSGRLMETGALFKLEVSILKDEVTLTIDTSGAGLHKRGYRLAQGSAPIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPI 217 (393)
T ss_dssp TCTTCCSCSSBCCEEEEEETTEEEEEEESSSSCTTCCSTTTTSCSCSCCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHH
T ss_pred CCCCCCCCCCCEEEEEEEECCEEEEEEecCCCcccccccccCCCCCCCcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHH
Confidence 2 6999999999999999999999999999999999997 668999999999999999999999999999999999999
Q ss_pred HHHhcCCC--------------------------------------CeEEEEeCCHHHHHHHHHHHHhccCCCCccccee
Q psy19 328 ECSLSYPH--------------------------------------TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVS 369 (494)
Q Consensus 328 EAA~~~~~--------------------------------------~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~ 369 (494)
|||++..+ ..|+|+|+|+.|++.|+.|+..+|+ .+.+.
T Consensus 218 eaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~Na~~~gl----~~~I~ 293 (393)
T 3k0b_A 218 EAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAGL----GDLIT 293 (393)
T ss_dssp HHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTC----TTCSE
T ss_pred HHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHHHHHHcCC----CCceE
Confidence 99986332 4599999999999999999998876 34578
Q ss_pred eeeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHhcccccee
Q psy19 370 PLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKC 449 (494)
Q Consensus 370 ~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~~~~l~~~ 449 (494)
+.++|+.+++.+ .+||+||+|||||.+++...++..+|+.+.+.+.. -+| |+++++|++.. +.+.++ .+.
T Consensus 294 ~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~--~~g-~~~~iit~~~~-l~~~~g-----~~~ 363 (393)
T 3k0b_A 294 FRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKR--MPT-WSVYVLTSYEL-FEEVYG-----KKA 363 (393)
T ss_dssp EEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT--CTT-CEEEEEECCTT-HHHHHT-----SCC
T ss_pred EEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhc--CCC-CEEEEEECCHH-HHHHhC-----CCc
Confidence 999999998765 58999999999999988766778888864433332 247 99999999987 566665 478
Q ss_pred eeeEEEccCCceEEEEEEee
Q psy19 450 RKQIKINMSGMKSFVFILNR 469 (494)
Q Consensus 450 ~~~~~v~~Ggl~~~i~v~~~ 469 (494)
.+++.++||+++|++|.|.-
T Consensus 364 ~~~~~l~nG~l~~~~~~~~~ 383 (393)
T 3k0b_A 364 TKKRKLYNGYLRTDLYQYWG 383 (393)
T ss_dssp SEEEEEC----CEEEEEECC
T ss_pred ccceEEecCCEEEEEEEEEC
Confidence 89999999999999999863
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-59 Score=486.74 Aligned_cols=322 Identities=21% Similarity=0.299 Sum_probs=282.4
Q ss_pred eEEEEEEcCCChHHHHHHHHHHHhCCccceEEEcCeEEEEeChhhHHHHh-hhhhhhhhhhhhhcccccCCCCCCCccCC
Q psy19 16 QITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVK-ELRGIDNILFIIATFENFGFSNKGTEEDS 94 (494)
Q Consensus 16 ~~~~~~t~~~GlE~~~~~E~~~kl~~~~~~~~~~G~V~F~~~~~~~~~~~-~lR~a~rl~~~l~~~~~~~~~~~~~~~~~ 94 (494)
.++|+|||++|||.+|++||++ ||.. .+...+|+|+|+++++++|++| |||+|+||++++++|++.+++
T Consensus 6 ~~~~~at~~~GlE~~l~~El~~-Lg~~-~~~~~~g~V~f~g~~~~~~~~~l~~R~a~RVl~~l~~f~~~~~~-------- 75 (385)
T 3ldu_A 6 NYTLISPCFFGMEKMLAREITN-LGYE-IIKTEDGRITYKTDEFGIAKSNMWLRCAERVHLKIAEFEAKSFD-------- 75 (385)
T ss_dssp CEEEEEECCTTCHHHHHHHHHH-TTCE-EEEEETTEEEEEECTTHHHHHHHHCSSCSCCEEEEEEEECSSHH--------
T ss_pred ceEEEEECChhHHHHHHHHHHh-cCCC-ceEEeccEEEEEECHHHHHHHHhccCceeEEEEEeeeEecCCHH--------
Confidence 4799999999999999999999 9965 6888999999999999999999 999999999999998665432
Q ss_pred CCCcchhhHHhhhhhHHHHHHhhhccCchhhHHHhhhhhccCCCcCcchhhccchhhhhhhccccchhhcccccCccCcc
Q psy19 95 GQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETE 174 (494)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~l~~~~~~~~W~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (494)
+ ||+.++.++|+++|...
T Consensus 76 --------------~---L~~~~~~i~w~~~~~~~--------------------------------------------- 93 (385)
T 3ldu_A 76 --------------E---LFENTKRINWSRYIPYG--------------------------------------------- 93 (385)
T ss_dssp --------------H---HHHHHHTSCGGGTSCTT---------------------------------------------
T ss_pred --------------H---HHHHHHhCCHHHhCCCC---------------------------------------------
Confidence 2 99999999999864321
Q ss_pred cccccchhccccchhhhhhhhhhhcccccccccCCCCCCCCcceEEEEE-EEEecCcccChHHHHHHHHHHHHhhcC---
Q psy19 175 PQVNNVQIEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVT-CNRVGKHTVTSMESERAFGGKLNDTYF--- 250 (494)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tFrV~-~~~~g~~~~~s~~~~~~v~~aI~d~~~--- 250 (494)
.||+|+ +++.+++.|++.+++.++|+||+|+++
T Consensus 94 -------------------------------------------~tf~V~~~~~~~s~~~~~~~~~~~vkdAIvd~~~~~~ 130 (385)
T 3ldu_A 94 -------------------------------------------AQFPISKASSIKSKLYSTPDVQAIVKKAIVESLKKSY 130 (385)
T ss_dssp -------------------------------------------CBCCEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred -------------------------------------------ceEEEEeecccCCCcCcHHHHHHHHHHHHHHHHHHhh
Confidence 279999 888888999999999999999999873
Q ss_pred -C--CCCCCCCCEEEEEEEecCcceeccccccccccccccc-ccccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHH
Q psy19 251 -W--LVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIV-EFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIP 326 (494)
Q Consensus 251 -~--~vdl~~pdi~i~v~l~~~~~~l~l~lsg~sL~~Rgy~-~~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtil 326 (494)
. .||+++|++.|.+++.++.+++++|++|++||+|||+ ..++|||+|++|++|+.+++|.++.+|||||||||||+
T Consensus 131 ~~rp~v~~~~p~~~i~~~i~~~~~~~~lD~sG~~l~krgyr~~~~~Apl~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~l 210 (385)
T 3ldu_A 131 LEDGLLKEDKEKYPIFVFIHKDKVTISIDTTGDALHKRGYREKANKAPIRETLAAGLIYLTPWKAGRVLVDPMCGSGTIL 210 (385)
T ss_dssp TCCSCCCCCSCBCCEEEEEETTEEEEEEESCCSCTTCCSCCCC--CCCCCHHHHHHHHHTSCCCTTSCEEETTCTTCHHH
T ss_pred CCCCCCCCCCCCEEEEEEEECCEEEEEEecCCChhhhcccccCCCCCCCcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHH
Confidence 2 6899999999999999999999999999999999997 56899999999999999999999999999999999999
Q ss_pred HHHHhcCCC--------------------------------------CeEEEEeCCHHHHHHHHHHHHhccCCCCcccce
Q psy19 327 VECSLSYPH--------------------------------------TFFVCGDINEKLVLKTQANVLHNSGNLNRELKV 368 (494)
Q Consensus 327 IEAA~~~~~--------------------------------------~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i 368 (494)
||||++..+ ..|+|+|+|+.|++.|++|+..+|+ .+.+
T Consensus 211 ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~Na~~~gl----~~~i 286 (385)
T 3ldu_A 211 IEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARENAEIAGV----DEYI 286 (385)
T ss_dssp HHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHHHHHHHTC----GGGE
T ss_pred HHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHHHHHHcCC----CCce
Confidence 999987321 4699999999999999999998875 4568
Q ss_pred eeeeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhccc--CCCcEEEEEecCHHHHHHHHHhcccc
Q psy19 369 SPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVR--PQIGRAILLTSDRKHLIQALHITSAL 446 (494)
Q Consensus 369 ~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLk--pg~G~lvllt~~~~~l~~~l~~~~~l 446 (494)
++.++|+.+++.+ ..||+||+|||||.+++...++..+|+. ++++|+ +| |+++++|++.. +.+.++
T Consensus 287 ~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~----lg~~lk~~~g-~~~~iit~~~~-l~~~~g----- 354 (385)
T 3ldu_A 287 EFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKE----LGYAFRKLKN-WSYYLITSYED-FEYEFG----- 354 (385)
T ss_dssp EEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHH----HHHHHHTSBS-CEEEEEESCTT-HHHHHT-----
T ss_pred EEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHH----HHHHHhhCCC-CEEEEEECCHH-HHHhhC-----
Confidence 9999999998654 5899999999999998876677788885 555555 47 99999999987 556555
Q ss_pred ceeeeeEEEccCCceEEEEEEe
Q psy19 447 WKCRKQIKINMSGMKSFVFILN 468 (494)
Q Consensus 447 ~~~~~~~~v~~Ggl~~~i~v~~ 468 (494)
.+..+++.++||+++|++|.|.
T Consensus 355 ~~~~~~~~l~nG~l~~~~~~~~ 376 (385)
T 3ldu_A 355 QKADKKRKLYNGMLKTNFFQYP 376 (385)
T ss_dssp SCCSEEEEEEETTEEEEEEEEC
T ss_pred CCcccceEEecCCEEEEEEEEE
Confidence 4778899999999999999886
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-58 Score=509.74 Aligned_cols=328 Identities=20% Similarity=0.249 Sum_probs=284.5
Q ss_pred EEEEEEcCCChHHHHHHHHHHHhCCccceEEEcCeEEEEeChhhHHHHh-hhhhhhhhhhhhhcccccCCCCCCCccCCC
Q psy19 17 ITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVK-ELRGIDNILFIIATFENFGFSNKGTEEDSG 95 (494)
Q Consensus 17 ~~~~~t~~~GlE~~~~~E~~~kl~~~~~~~~~~G~V~F~~~~~~~~~~~-~lR~a~rl~~~l~~~~~~~~~~~~~~~~~~ 95 (494)
++|||||++|||.+|++||++ ||.. .+...+|+|+|+++++++|++| |||+|+||++++++|++.+++
T Consensus 3 ~~~~a~~~~GlE~~l~~El~~-lg~~-~~~~~~g~V~f~g~~~~~~~~~l~~R~a~Rvl~~l~~f~~~~~~--------- 71 (703)
T 3v97_A 3 NSLFASTARGLEELLKTELEN-LGAV-ECQVVQGGVHFKGDTRLVYQSLMWSRLASRIMLPLGECKVYSDL--------- 71 (703)
T ss_dssp EEEEEECCTTCHHHHHHHHHH-TTCE-EEEEETTEEEEEECHHHHHHHHHHCSSCSEEEEEEEEEECSSHH---------
T ss_pred eeEEEECCCcHHHHHHHHHHh-cCCc-ccEEECCEEEEEeCHHHHHHHHHhhCceeEEEEEEEEEecCCHH---------
Confidence 579999999999999999999 9975 7888999999999999999999 999999999999998665432
Q ss_pred CCcchhhHHhhhhhHHHHHHhhhccCchhhHHHhhhhhccCCCcCcchhhccchhhhhhhccccchhhcccccCccCccc
Q psy19 96 QKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEP 175 (494)
Q Consensus 96 ~~~~~~~~~~~l~~~~~l~~~~~~~~W~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (494)
+ ||+.++.+||+++|...
T Consensus 72 -------------~---L~~~~~~~~w~~~~~~~---------------------------------------------- 89 (703)
T 3v97_A 72 -------------D---LYLGVQAINWTEMFNPG---------------------------------------------- 89 (703)
T ss_dssp -------------H---HHHHHHTSCHHHHBCTT----------------------------------------------
T ss_pred -------------H---HHHHHHcCCHHHhCCCC----------------------------------------------
Confidence 3 99999999999865432
Q ss_pred ccccchhccccchhhhhhhhhhhcccccccccCCCCCCCCcceEEEEEEEEecCcccChHHHHHHHHHHHHhhc----CC
Q psy19 176 QVNNVQIEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTY----FW 251 (494)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tFrV~~~~~g~~~~~s~~~~~~v~~aI~d~~----~~ 251 (494)
.||+|++++.+++.+++++++.++|+||+|++ ++
T Consensus 90 ------------------------------------------~tf~V~~~~~~~~~~~~~~~~~~vk~ai~d~~~~~~g~ 127 (703)
T 3v97_A 90 ------------------------------------------ATFAVHFSGLNDTIRNSQYGAMKVKDAIVDAFTRKNLP 127 (703)
T ss_dssp ------------------------------------------CCEEEEEECCCSSCCSHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ------------------------------------------ceEEEEEEEecCCcCChHHHHHHHHHHHHHHHHHhhCC
Confidence 27999998888888899999999999999988 33
Q ss_pred --CCCCCCCCEEEEEEEecCcceeccccccccccccccc-ccccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHH
Q psy19 252 --LVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIV-EFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVE 328 (494)
Q Consensus 252 --~vdl~~pdi~i~v~l~~~~~~l~l~lsg~sL~~Rgy~-~~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIE 328 (494)
+||+++||++|++++.++.+++++|+||++||+|||+ ..++|||+|+||++|+.+++|.++.+|||||||||||+||
T Consensus 128 rp~v~~~~pd~~i~v~l~~~~~~l~ld~sg~~LhkRgyr~~~~~apl~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIe 207 (703)
T 3v97_A 128 RPNVDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIE 207 (703)
T ss_dssp CCCBCSSSCSEEEEEEEETTEEEEEEESSSSCTTCCSSSCSSCCCSSCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHH
T ss_pred CCCCCCCCCCEEEEEEEECCEEEEEEecCCCccccccccccCCCCCCcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHH
Confidence 5999999999999999999999999999999999997 5689999999999999999999999999999999999999
Q ss_pred HHhcC------------------------------------------CCCeEEEEeCCHHHHHHHHHHHHhccCCCCccc
Q psy19 329 CSLSY------------------------------------------PHTFFVCGDINEKLVLKTQANVLHNSGNLNREL 366 (494)
Q Consensus 329 AA~~~------------------------------------------~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~ 366 (494)
||++. +...++|+|+|+.|++.|++|+..+|+ .+
T Consensus 208 Aa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~agv----~~ 283 (703)
T 3v97_A 208 AAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQRARTNARLAGI----GE 283 (703)
T ss_dssp HHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHHHHHHHHHHHTTC----GG
T ss_pred HHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHHHHHHHHHHHcCC----CC
Confidence 99862 114799999999999999999999876 45
Q ss_pred ceeeeeeccccccCC--CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHhcc
Q psy19 367 KVSPLVCNVRQLCFK--PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITS 444 (494)
Q Consensus 367 ~i~~~~~Da~~l~~~--~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~~~ 444 (494)
.+.+.++|+.++..+ .+.||+||+|||||.|++...++..+|+.+ .++.+.+.|| |+++++|++.. +.+.++
T Consensus 284 ~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l-~~~lk~~~~g-~~~~ilt~~~~-l~~~~g--- 357 (703)
T 3v97_A 284 LITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLL-GRIMKNQFGG-WNLSLFSASPD-LLSCLQ--- 357 (703)
T ss_dssp GEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHH-HHHHHHHCTT-CEEEEEESCHH-HHHTTC---
T ss_pred ceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHH-HHHHHhhCCC-CeEEEEeCCHH-HHHHhC---
Confidence 689999999988432 338999999999999998887888899853 3344445588 99999999987 444333
Q ss_pred ccceeeeeEEEccCCceEEEEEEeeCC
Q psy19 445 ALWKCRKQIKINMSGMKSFVFILNRTA 471 (494)
Q Consensus 445 ~l~~~~~~~~v~~Ggl~~~i~v~~~~~ 471 (494)
++..+++.++||+++|++|.|+...
T Consensus 358 --lk~~k~~~l~nG~l~~~~~~y~~~~ 382 (703)
T 3v97_A 358 --LRADKQYKAKNGPLDCVQKNYHVAE 382 (703)
T ss_dssp --CCEEEEEEEEETTEEEEEEEEECCC
T ss_pred --CCcccceeeecCCEEEEEEEEEecc
Confidence 5889999999999999999998743
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-56 Score=464.62 Aligned_cols=345 Identities=23% Similarity=0.331 Sum_probs=295.2
Q ss_pred EEEEEEcCCChHHHHHHHHHHHhCCc-------cceEE-EcCeEEEEe-------------ChhhHHHHh-hhhhhhhhh
Q psy19 17 ITIEATVVTGFEDVVVEECQEKFGKD-------LLLMK-SIGRVFFNI-------------DLKDIEKVK-ELRGIDNIL 74 (494)
Q Consensus 17 ~~~~~t~~~GlE~~~~~E~~~kl~~~-------~~~~~-~~G~V~F~~-------------~~~~~~~~~-~lR~a~rl~ 74 (494)
|+|+|||++|||.+|++||++ ||.. ..+.. .+|+|+|++ +++.++++| |||+|+||+
T Consensus 1 ~~~~~~~~~GlE~~l~~El~~-lg~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~a~rv~ 79 (373)
T 3tm4_A 1 MKFLLTTAQGIEDIAKREVSL-LLKKLGISFQIEEKPLGIEGRLLLEAEKAYYVDEKGRKRELSISTYLNENSRLLHRVI 79 (373)
T ss_dssp CEEEEECCTTCHHHHHHHHHH-HHHTTTCCEEEEESGGGCTTEEEEEECCEEEECTTSCEEEECHHHHHHHHCSSCSEEE
T ss_pred CeEEEEcCcchHHHHHHHHHH-hhccccccccceeccccccceEEEEEecccccccccccCCHHHHHHHHHhhhhHhheE
Confidence 689999999999999999999 7641 13344 799999999 999999999 999999999
Q ss_pred hhhhcccccCCCCCCCccCCCCCcchhhHHhhhhhHHHHHHhhhccCchhhHHHhhhhhccCCCcCcchhhccchhhhhh
Q psy19 75 FIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYNGVLYPSIEQFNKYNDILR 154 (494)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~W~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 154 (494)
+++++|++.+.... .++. .+++ ||+.++.++|++++...
T Consensus 80 ~~~~~~~~~~~~~~-~~~~------------~~~~---L~~~v~~~~w~~~l~~~------------------------- 118 (373)
T 3tm4_A 80 IEIASEKFNGIEKD-ESEE------------ALKR---IKDFVSSLPVEQFVKVS------------------------- 118 (373)
T ss_dssp EEEEEEECTTTTTS-CHHH------------HHHH---HHHHHHTSCGGGGSCTT-------------------------
T ss_pred EEEEEeEecccccc-ccCC------------CHHH---HHHHHHhCCHHHhCCCC-------------------------
Confidence 99999865332210 0111 3444 99999999998854322
Q ss_pred hccccchhhcccccCccCcccccccchhccccchhhhhhhhhhhcccccccccCCCCCCCCcceEEEEEEEEecCcccCh
Q psy19 155 HKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTS 234 (494)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tFrV~~~~~g~~~~~s 234 (494)
.||+|++++.+++.|+|
T Consensus 119 ---------------------------------------------------------------~tF~V~~~~~~~~~~~s 135 (373)
T 3tm4_A 119 ---------------------------------------------------------------ETFAVRSFRKGDHNITS 135 (373)
T ss_dssp ---------------------------------------------------------------SEEEEEEEEESSCSSCH
T ss_pred ---------------------------------------------------------------CcEEEEEEECCCCcCCH
Confidence 28999999999889999
Q ss_pred HHHHHHHHHHHHhhcC----CCCCCCCCCEEEEEEEecCcceeccccccc-cccccccc-ccccccchHHHHHHHHHHhC
Q psy19 235 MESERAFGGKLNDTYF----WLVDLDDYDIDINLQIRYNEAYVGLPVTQT-SLHRRNIV-EFNITTLKPTIAYNMVRLAS 308 (494)
Q Consensus 235 ~~~~~~v~~aI~d~~~----~~vdl~~pdi~i~v~l~~~~~~l~l~lsg~-sL~~Rgy~-~~~~a~L~e~lAa~ll~la~ 308 (494)
.++++++|++|+|++. ..||+++|++.|++++.++.++++++++|+ ++|+|||+ +.+++|+++++|+.|+.++
T Consensus 136 ~~~~~~vk~aIvd~~~~~g~~~v~~~~p~~~i~~~~~~d~~~~~ld~~g~~~l~~rgyr~~~~~a~l~~~la~~l~~~~- 214 (373)
T 3tm4_A 136 IDIARTVGEAIFERLSRFGTPLVNLDHPAVIFRAELIKDVFFLGIDTTGDSSLHKRPWRVYDHPAHLKASIANAMIELA- 214 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEECSSSCSEEEEEEEETTEEEEEEESSCSSCTTCCTTCCSCCTTCCCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccCCCCCeEEEEEEECCEEEEEEEccCCcccccCCcccccCCCCccHHHHHHHHHhh-
Confidence 9999999999998875 579999999999999999999999999997 99999997 5689999999999999999
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEE
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGI 388 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~I 388 (494)
|.++.+|||||||+|++++++|.+.+...++|+|+|+.+++.|++|+..+|+ ...+.+.++|+.++++++++||+|
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl----~~~i~~~~~D~~~~~~~~~~fD~I 290 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGV----LDKIKFIQGDATQLSQYVDSVDFA 290 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTC----GGGCEEEECCGGGGGGTCSCEEEE
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCC----CCceEEEECChhhCCcccCCcCEE
Confidence 9999999999999999999999986555899999999999999999998865 456799999999998776799999
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHhccccceeeeeEEEccCCceEEEEEEe
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILN 468 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~~~~l~~~~~~~~v~~Ggl~~~i~v~~ 468 (494)
|+|||||.+++....+..+|..+++++.++| + |++++++++...+.+.+...| |+..+...++||+++|++|...
T Consensus 291 i~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~-g~~~~i~~~~~~~~~~~~~~G--~~~~~~~~~~nG~l~~~~~~~~ 365 (373)
T 3tm4_A 291 ISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--E-KRGVFITTEKKAIEEAIAENG--FEIIHHRVIGHGGLMVHLYVVK 365 (373)
T ss_dssp EEECCCC------CCHHHHHHHHHHHHHHHE--E-EEEEEEESCHHHHHHHHHHTT--EEEEEEEEEEETTEEEEEEEEE
T ss_pred EECCCCCcccCcchhHHHHHHHHHHHHHHHc--C-CeEEEEECCHHHHHHHHHHcC--CEEEEEEEEEcCCEEEEEEecc
Confidence 9999999999887788999999999999999 6 889999999888888888777 7889999999999999999999
Q ss_pred eCCCCCCC
Q psy19 469 RTADLFDY 476 (494)
Q Consensus 469 ~~~~~~d~ 476 (494)
+..+.+.|
T Consensus 366 ~~~~~~~~ 373 (373)
T 3tm4_A 366 LEHHHHHH 373 (373)
T ss_dssp ETTCC---
T ss_pred CccCCCCC
Confidence 88777665
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-55 Score=448.33 Aligned_cols=332 Identities=29% Similarity=0.379 Sum_probs=287.7
Q ss_pred EEEEEEcCCChHHHHHHHHHHHhCCccceEEEc--CeEEEEeChhhHHHHhhhhhhhhhhhhhhcccccCCCCCCCccCC
Q psy19 17 ITIEATVVTGFEDVVVEECQEKFGKDLLLMKSI--GRVFFNIDLKDIEKVKELRGIDNILFIIATFENFGFSNKGTEEDS 94 (494)
Q Consensus 17 ~~~~~t~~~GlE~~~~~E~~~kl~~~~~~~~~~--G~V~F~~~~~~~~~~~~lR~a~rl~~~l~~~~~~~~~~~~~~~~~ 94 (494)
|+|+|||++|||.+|++||+++||.. .+.... |+|+|.++.+ ...+.+||+|+||++++++|... ..+
T Consensus 20 ~~~~~~~~~GlE~~l~~El~~~lg~~-~~~~~~~~g~v~~~~~~~-~~~~~~lR~a~rvl~~~~~~~~~-~~~------- 89 (354)
T 3tma_A 20 MWLEATTHPGLEDLLLEELSALYPGE-GAEVDARKGRVRIPRAWV-GEEALGLRLAHHLVLFRARLLLS-RED------- 89 (354)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHSCSS-CCEEETTTTEEEEECSCC-CGGGGGCSSCSCEEEEEEEEECC-SSS-------
T ss_pred eEEEEECCccHHHHHHHHHHHHcCCc-cceeeecCCEEEEEecCC-HHHHHhcCCccEEEEEeeeccCC-chh-------
Confidence 88999999999999999999989865 565544 9999887542 33345899999999999987321 100
Q ss_pred CCCcchhhHHhhhhhHHHHHHhhhccCchhhHHHhhhhhccCCCcCcchhhccchhhhhhhccccchhhcccccCccCcc
Q psy19 95 GQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETE 174 (494)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~l~~~~~~~~W~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (494)
++++ ||+.++.++|+++ ...
T Consensus 90 -----------~~~~---L~~~~~~~~w~~~-~~~--------------------------------------------- 109 (354)
T 3tma_A 90 -----------PLGA---LERAALALPWPEL-EGA--------------------------------------------- 109 (354)
T ss_dssp -----------HHHH---HHHHHHTSCCTTH-HHH---------------------------------------------
T ss_pred -----------hHHH---HHHHHHhCchhhc-CCC---------------------------------------------
Confidence 1444 9999999999985 111
Q ss_pred cccccchhccccchhhhhhhhhhhcccccccccCCCCCCCCcceEEEEEEEEecCcccChHHHHHHHHHHHHhhcCCCCC
Q psy19 175 PQVNNVQIEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVD 254 (494)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tFrV~~~~~g~~~~~s~~~~~~v~~aI~d~~~~~vd 254 (494)
.||+|++++.+++.|++.++++.+++.+.+.++++||
T Consensus 110 -------------------------------------------~tF~V~~~~~~~~~f~s~~vk~~i~~~l~~~~g~~v~ 146 (354)
T 3tma_A 110 -------------------------------------------GSFRVEARREGEHPFTSPEVERRVGEALHRAYGVPVD 146 (354)
T ss_dssp -------------------------------------------CCEEEEEEEESCCSSCHHHHHHHHHHHHHHHHCCCBC
T ss_pred -------------------------------------------CCEEEEEEEcCCCCCCHHHHHHHHHHHHHHhhCCccc
Confidence 2799999999988899999999999999998888999
Q ss_pred CCCCCEEEEEEEecCcceecccccccccccccccccccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcC-
Q psy19 255 LDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY- 333 (494)
Q Consensus 255 l~~pdi~i~v~l~~~~~~l~l~lsg~sL~~Rgy~~~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~- 333 (494)
+++||++|++++.++.++++++++|++||+|+|+..+++|+++++|++|+.+++|+++.+|||||||+|++++++|.++
T Consensus 147 ~~~pd~~i~v~i~~d~~~l~~d~sg~~l~~r~yr~~~~a~l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~ 226 (354)
T 3tma_A 147 LKRPAVRVRVDVRGEEAFLGVQLTERPLSRRFPKAALRGSLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLG 226 (354)
T ss_dssp SSSCSEEEEEEEETTEEEEEEECCSSCGGGCCGGGCSSCSCCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHC
T ss_pred CCCCCEEEEEEEECCEEEEEEEccCCcccccccccCCCCCcCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhC
Confidence 9999999999999999999999999999999997688999999999999999999999999999999999999999986
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHH
Q psy19 334 PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLI 413 (494)
Q Consensus 334 ~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~ 413 (494)
+...++|+|+|+.+++.|++|+..+|+ . .+.+.++|+.+++.+...||+||+|||||.+++.......+|..+++
T Consensus 227 ~~~~v~g~Di~~~~i~~a~~n~~~~g~----~-~i~~~~~D~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~ 301 (354)
T 3tma_A 227 PTSPVYAGDLDEKRLGLAREAALASGL----S-WIRFLRADARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLR 301 (354)
T ss_dssp TTSCEEEEESCHHHHHHHHHHHHHTTC----T-TCEEEECCGGGGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHcCC----C-ceEEEeCChhhCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHH
Confidence 678999999999999999999998875 2 57899999999876666799999999999999877778899999999
Q ss_pred HHhhcccCCCcEEEEEecCHHHHHHHHHhccccceeeeeEEEccCCceEEEEEEeeC
Q psy19 414 EIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRT 470 (494)
Q Consensus 414 ~l~rvLkpg~G~lvllt~~~~~l~~~l~~~~~l~~~~~~~~v~~Ggl~~~i~v~~~~ 470 (494)
.+.++|+|| |++++++++...+..... .+ |+..++..+++|++.+++|++++.
T Consensus 302 ~~~~~Lkpg-G~l~i~t~~~~~~~~~~~-~g--~~~~~~~~l~~g~l~~~i~vl~rl 354 (354)
T 3tma_A 302 GALALLPPG-GRVALLTLRPALLKRALP-PG--FALRHARVVEQGGVYPRVFVLEKL 354 (354)
T ss_dssp HHHHTSCTT-CEEEEEESCHHHHHHHCC-TT--EEEEEEEECCBTTBCCEEEEEEEC
T ss_pred HHHHhcCCC-cEEEEEeCCHHHHHHHhh-cC--cEEEEEEEEEeCCEEEEEEEEEcC
Confidence 999999999 999999999876655444 44 688899999999999999999873
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.1e-17 Score=154.74 Aligned_cols=160 Identities=14% Similarity=0.103 Sum_probs=117.4
Q ss_pred hCCCCCCEEEEEcCC-cChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc-cCCCCC
Q psy19 307 ASPIPGDVFLDPMCG-GGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-CFKPAC 384 (494)
Q Consensus 307 a~~~~g~~VLDP~CG-SGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-~~~~~~ 384 (494)
...+++.+|||+||| +|.+++.++..+ +..++|+|+++.+++.|++|+..+++ ++.++++|+..+ ++++++
T Consensus 51 ~~~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~------~v~~~~~d~~~~~~~~~~~ 123 (230)
T 3evz_A 51 TFLRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNS------NVRLVKSNGGIIKGVVEGT 123 (230)
T ss_dssp TTCCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTC------CCEEEECSSCSSTTTCCSC
T ss_pred hhcCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCC------CcEEEeCCchhhhhcccCc
Confidence 345688999999999 999999998875 57999999999999999999998764 468899997544 344578
Q ss_pred eeEEEEcCCCccccC-----------CccchHHHHHHHHHHHhhcccCCCcEEEEEecCH----HHHHHHHHhcccccee
Q psy19 385 VDGIVTDLPFGKRVG-----------SKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR----KHLIQALHITSALWKC 449 (494)
Q Consensus 385 ~D~IVtNPPYG~r~~-----------~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~----~~l~~~l~~~~~l~~~ 449 (494)
||+|++||||..... .......++..+++++.++|+|| |+++++++.. ..+.+.+.+.+ + .
T Consensus 124 fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~~~~~~~~~~~~l~~~g--~-~ 199 (230)
T 3evz_A 124 FDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPG-GKVALYLPDKEKLLNVIKERGIKLG--Y-S 199 (230)
T ss_dssp EEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEE-EEEEEEEESCHHHHHHHHHHHHHTT--C-E
T ss_pred eeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCC-eEEEEEecccHhHHHHHHHHHHHcC--C-c
Confidence 999999999964221 00112345688999999999999 9999977642 23455556555 3 3
Q ss_pred eeeEEEccCCceEEEEEEeeCCCCCCCc
Q psy19 450 RKQIKINMSGMKSFVFILNRTADLFDYA 477 (494)
Q Consensus 450 ~~~~~v~~Ggl~~~i~v~~~~~~~~d~~ 477 (494)
...+.+..|....+++.|.+...+++|-
T Consensus 200 ~~~~~~~~g~~~~~~l~f~~~~~~~~~~ 227 (230)
T 3evz_A 200 VKDIKFKVGTRWRHSLIFFKGISEGHHH 227 (230)
T ss_dssp EEEEEECCCC-CEEEEEEECCC------
T ss_pred eEEEEecCCCeEEEEEEEeccccccccc
Confidence 4566778888889999999988888874
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.4e-16 Score=151.38 Aligned_cols=147 Identities=12% Similarity=0.139 Sum_probs=107.7
Q ss_pred HHHHHHhCCC-CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc
Q psy19 301 YNMVRLASPI-PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC 379 (494)
Q Consensus 301 a~ll~la~~~-~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~ 379 (494)
..+..++... ++.+|||+|||+|.+++.+|...+. .++|+|+++.+++.|++|+..+++ .+++.++++|+.+++
T Consensus 38 ~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~----~~~v~~~~~D~~~~~ 112 (259)
T 3lpm_A 38 VLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQL----EDQIEIIEYDLKKIT 112 (259)
T ss_dssp HHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTC----TTTEEEECSCGGGGG
T ss_pred HHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCC----cccEEEEECcHHHhh
Confidence 3345566777 8899999999999999999988553 999999999999999999998765 456899999999875
Q ss_pred --CCCCCeeEEEEcCCCccccCC----c--------cchHHHHHHHHHHHhhcccCCCcEEEEEecCH--HHHHHHHHhc
Q psy19 380 --FKPACVDGIVTDLPFGKRVGS----K--------SNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR--KHLIQALHIT 443 (494)
Q Consensus 380 --~~~~~~D~IVtNPPYG~r~~~----~--------~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~--~~l~~~l~~~ 443 (494)
++.++||+|++||||....+. . ......+..+++.+.++|+|| |+++++.+.. ..+...+...
T Consensus 113 ~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~~~~~~~~~~l~~~ 191 (259)
T 3lpm_A 113 DLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQG-GKANFVHRPERLLDIIDIMRKY 191 (259)
T ss_dssp GTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEE-EEEEEEECTTTHHHHHHHHHHT
T ss_pred hhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCC-cEEEEEEcHHHHHHHHHHHHHC
Confidence 445799999999999543110 0 011234667899999999999 9999987643 3344455554
Q ss_pred cccceeeeeEEE
Q psy19 444 SALWKCRKQIKI 455 (494)
Q Consensus 444 ~~l~~~~~~~~v 455 (494)
+ +...+...+
T Consensus 192 ~--~~~~~~~~v 201 (259)
T 3lpm_A 192 R--LEPKRIQFV 201 (259)
T ss_dssp T--EEEEEEEEE
T ss_pred C--CceEEEEEe
Confidence 4 444444444
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.5e-17 Score=151.44 Aligned_cols=160 Identities=12% Similarity=0.065 Sum_probs=102.3
Q ss_pred cccccchHHHHHHHHHHhCC-CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccce
Q psy19 290 FNITTLKPTIAYNMVRLASP-IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKV 368 (494)
Q Consensus 290 ~~~a~L~e~lAa~ll~la~~-~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i 368 (494)
+.|.+..+.++..++..... .++.+|||+|||+|.+++.++..+++..++|+|+++.+++.|++|+..++. ++
T Consensus 8 ~~p~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~ 81 (215)
T 4dzr_A 8 LIPRPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA------VV 81 (215)
T ss_dssp GSCCHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC------------------------
T ss_pred cCCCccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC------ce
Confidence 45677778888888887765 678899999999999999999998888999999999999999999987653 46
Q ss_pred eeeeeccccccCCC-----CCeeEEEEcCCCccccCC------------------ccchHHHHHHHHHHHhhcccCCCcE
Q psy19 369 SPLVCNVRQLCFKP-----ACVDGIVTDLPFGKRVGS------------------KSNNFLLYRLFLIEIGKIVRPQIGR 425 (494)
Q Consensus 369 ~~~~~Da~~l~~~~-----~~~D~IVtNPPYG~r~~~------------------~~~~~~ly~~fL~~l~rvLkpg~G~ 425 (494)
.++++|+.+ ++.+ ++||+|++||||...... ..+....|..+++++.++|+|| |+
T Consensus 82 ~~~~~d~~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~ 159 (215)
T 4dzr_A 82 DWAAADGIE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARG-RA 159 (215)
T ss_dssp -CCHHHHHH-HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSS-SE
T ss_pred EEEEcchHh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCC-Ce
Confidence 788999887 4443 789999999999542211 0112345688999999999999 99
Q ss_pred -EEEEec--CHHHHHHHHH--hccccceeeeeEEEccCC
Q psy19 426 -AILLTS--DRKHLIQALH--ITSALWKCRKQIKINMSG 459 (494)
Q Consensus 426 -lvllt~--~~~~l~~~l~--~~~~l~~~~~~~~v~~Gg 459 (494)
+++.++ ....+...+. ..+ |..........|.
T Consensus 160 l~~~~~~~~~~~~~~~~l~~~~~g--f~~~~~~~~~~~~ 196 (215)
T 4dzr_A 160 GVFLEVGHNQADEVARLFAPWRER--GFRVRKVKDLRGI 196 (215)
T ss_dssp EEEEECTTSCHHHHHHHTGGGGGG--TEECCEEECTTSC
T ss_pred EEEEEECCccHHHHHHHHHHhhcC--CceEEEEEecCCC
Confidence 555544 2344555565 444 4444444444443
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.9e-16 Score=153.60 Aligned_cols=149 Identities=8% Similarity=0.079 Sum_probs=106.3
Q ss_pred HHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHh---ccCCCCcccceeeeeeccccc
Q psy19 302 NMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH---NSGNLNRELKVSPLVCNVRQL 378 (494)
Q Consensus 302 ~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~---~g~~~~~~~~i~~~~~Da~~l 378 (494)
.|..++...++.+|||+|||+|.+++.++...++..++|+|+++.+++.|++|+.. +++ .+++.++++|+.++
T Consensus 27 lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l----~~~v~~~~~D~~~~ 102 (260)
T 2ozv_A 27 LLASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAF----SARIEVLEADVTLR 102 (260)
T ss_dssp HHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTT----GGGEEEEECCTTCC
T ss_pred HHHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCC----cceEEEEeCCHHHH
Confidence 34455666778899999999999999999998888999999999999999999987 543 45689999999886
Q ss_pred -------cCCCCCeeEEEEcCCCccccCCc--c--------chHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHH
Q psy19 379 -------CFKPACVDGIVTDLPFGKRVGSK--S--------NNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALH 441 (494)
Q Consensus 379 -------~~~~~~~D~IVtNPPYG~r~~~~--~--------~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~ 441 (494)
++++++||+|++||||....+.. . .....+..+++.+.++|+|| |+++++.+... +.+.+.
T Consensus 103 ~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~~~-~~~~~~ 180 (260)
T 2ozv_A 103 AKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSG-GQLSLISRPQS-VAEIIA 180 (260)
T ss_dssp HHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEE-EEEEEEECGGG-HHHHHH
T ss_pred hhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCC-CEEEEEEcHHH-HHHHHH
Confidence 24457899999999997541100 0 00112567888999999999 99999887643 333333
Q ss_pred hccccceeeeeEEEc
Q psy19 442 ITSALWKCRKQIKIN 456 (494)
Q Consensus 442 ~~~~l~~~~~~~~v~ 456 (494)
.....+...+...+.
T Consensus 181 ~l~~~~~~~~i~~v~ 195 (260)
T 2ozv_A 181 ACGSRFGGLEITLIH 195 (260)
T ss_dssp HHTTTEEEEEEEEEE
T ss_pred HHHhcCCceEEEEEc
Confidence 222123444444444
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-15 Score=148.80 Aligned_cols=161 Identities=12% Similarity=0.036 Sum_probs=122.1
Q ss_pred ccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 291 NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 291 ~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
.|.|..+.+...++.... .++.+|||+|||+|.+++.++..+++..++|+|+++.+++.|++|+..+++ .++.+
T Consensus 90 ipr~~te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-----~~v~~ 163 (276)
T 2b3t_A 90 IPRPDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-----KNIHI 163 (276)
T ss_dssp CCCTTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC-----CSEEE
T ss_pred ccCchHHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CceEE
Confidence 466778888888888766 567899999999999999999888888999999999999999999998764 24789
Q ss_pred eeeccccccCCCCCeeEEEEcCCCccccC-----------C------ccchHHHHHHHHHHHhhcccCCCcEEEEEecC-
Q psy19 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVG-----------S------KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD- 432 (494)
Q Consensus 371 ~~~Da~~l~~~~~~~D~IVtNPPYG~r~~-----------~------~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~- 432 (494)
.++|+... ++.++||+|++||||..... . ..+....|..++..+.++|+|| |.+++..+.
T Consensus 164 ~~~d~~~~-~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkpg-G~l~~~~~~~ 241 (276)
T 2b3t_A 164 LQSDWFSA-LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSG-GFLLLEHGWQ 241 (276)
T ss_dssp ECCSTTGG-GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEE-EEEEEECCSS
T ss_pred EEcchhhh-cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCC-CEEEEEECch
Confidence 99999874 33468999999999964311 0 0111256889999999999999 999887653
Q ss_pred -HHHHHHHHHhccccceeeeeEEEccCCceE
Q psy19 433 -RKHLIQALHITSALWKCRKQIKINMSGMKS 462 (494)
Q Consensus 433 -~~~l~~~l~~~~~l~~~~~~~~v~~Ggl~~ 462 (494)
...+.+.+...| |....... ...|..+
T Consensus 242 ~~~~~~~~l~~~G--f~~v~~~~-d~~g~~r 269 (276)
T 2b3t_A 242 QGEAVRQAFILAG--YHDVETCR-DYGDNER 269 (276)
T ss_dssp CHHHHHHHHHHTT--CTTCCEEE-CTTSSEE
T ss_pred HHHHHHHHHHHCC--CcEEEEEe-cCCCCCc
Confidence 345667777665 34444333 3344443
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.5e-15 Score=139.10 Aligned_cols=165 Identities=12% Similarity=0.076 Sum_probs=114.9
Q ss_pred hCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-CCCCC
Q psy19 307 ASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-FKPAC 384 (494)
Q Consensus 307 a~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~~~~~ 384 (494)
...+++.+|||+|||+|.+++.++... +...++|+|+++.+++.|++|+..+++ ..++.++++|+..++ +.+++
T Consensus 18 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~ 93 (197)
T 3eey_A 18 MFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNL----IDRVTLIKDGHQNMDKYIDCP 93 (197)
T ss_dssp HHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTC----GGGEEEECSCGGGGGGTCCSC
T ss_pred hcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCCeEEEECCHHHHhhhccCC
Confidence 345688999999999999999988874 457999999999999999999998754 456889999998875 44578
Q ss_pred eeEEEEcCCCcccc-CCccchHHHHHHHHHHHhhcccCCCcEEEEEecC--------HHHHHHHHHhcc-ccceeeeeEE
Q psy19 385 VDGIVTDLPFGKRV-GSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD--------RKHLIQALHITS-ALWKCRKQIK 454 (494)
Q Consensus 385 ~D~IVtNPPYG~r~-~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~--------~~~l~~~l~~~~-~l~~~~~~~~ 454 (494)
||+|++||||-... .........+..+++++.++|+|| |+++++... ...+.+.+.... ..|.......
T Consensus 94 fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~ 172 (197)
T 3eey_A 94 VKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTG-GIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDF 172 (197)
T ss_dssp EEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEE-EEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEE
T ss_pred ceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCC-CEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEe
Confidence 99999999982111 001112334556888999999999 999887531 122333333222 1133333333
Q ss_pred EccCCceEEEEEEeeCCCCCCC
Q psy19 455 INMSGMKSFVFILNRTADLFDY 476 (494)
Q Consensus 455 v~~Ggl~~~i~v~~~~~~~~d~ 476 (494)
+...+....+++.+....++.|
T Consensus 173 ~~~~~~pp~~~~~~~~~~~~~~ 194 (197)
T 3eey_A 173 INQANCPPILVCIEKISEGHHH 194 (197)
T ss_dssp TTCCSCCCEEEEEEECCSSCCC
T ss_pred ccCccCCCeEEEEEEccccccc
Confidence 3333556677777777766655
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.2e-16 Score=167.70 Aligned_cols=168 Identities=13% Similarity=0.140 Sum_probs=118.1
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC---------------CCeEEEEeCCHHHHHHHHHHHHhcc
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP---------------HTFFVCGDINEKLVLKTQANVLHNS 359 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~---------------~~~v~G~Did~~al~~Ar~Nl~~~g 359 (494)
++..++..|+.++.+.++ +||||+||||+|+++++.... ...++|+|+++.++.+|+.|+..+|
T Consensus 229 TP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g 307 (544)
T 3khk_A 229 TPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRG 307 (544)
T ss_dssp CCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhC
Confidence 456677888888888776 999999999999999875421 3579999999999999999999887
Q ss_pred CCCCcccceeeeeecccccc-CCCCCeeEEEEcCCCcccc-CC---------------------ccchHHHHHHHHHHHh
Q psy19 360 GNLNRELKVSPLVCNVRQLC-FKPACVDGIVTDLPFGKRV-GS---------------------KSNNFLLYRLFLIEIG 416 (494)
Q Consensus 360 ~~~~~~~~i~~~~~Da~~l~-~~~~~~D~IVtNPPYG~r~-~~---------------------~~~~~~ly~~fL~~l~ 416 (494)
+. ..+.+.++|+...+ +....||+||+||||+.+. .. ......-| .|+..+.
T Consensus 308 i~----~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~-~Fl~~~l 382 (544)
T 3khk_A 308 ID----FNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANF-AWMLHML 382 (544)
T ss_dssp CC----CBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHH-HHHHHHH
T ss_pred CC----cccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhH-HHHHHHH
Confidence 63 23456889987764 3456899999999998641 11 00000112 5888999
Q ss_pred hcccCCCcEEEEEecCHHH---------HHHHHHhccccceeeeeEE-----EccCCceEEEEEEeeCCC
Q psy19 417 KIVRPQIGRAILLTSDRKH---------LIQALHITSALWKCRKQIK-----INMSGMKSFVFILNRTAD 472 (494)
Q Consensus 417 rvLkpg~G~lvllt~~~~~---------l~~~l~~~~~l~~~~~~~~-----v~~Ggl~~~i~v~~~~~~ 472 (494)
+.|+|| |++++|+|+..+ +++.+-+.+. ....+. +.+-+..+.|+++.+...
T Consensus 383 ~~Lk~g-Gr~aiVlP~g~L~~~~~~~~~iRk~Lle~~~---l~aII~LP~~lF~~t~i~t~Ilvl~K~k~ 448 (544)
T 3khk_A 383 YHLAPT-GSMALLLANGSMSSNTNNEGEIRKTLVEQDL---VECMVALPGQLFTNTQIPACIWFLTKDKN 448 (544)
T ss_dssp HTEEEE-EEEEEEEETHHHHCCGGGHHHHHHHHHHTTC---EEEEEECCTTBCCSCSSCEEEEEEESCCS
T ss_pred HHhccC-ceEEEEecchhhhcCcchHHHHHHHHHhCCc---HhEEEECCCCCCCCCCCCeEEEEEecCCC
Confidence 999999 999999986532 2222222221 111121 235577888888887654
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.64 E-value=6.3e-16 Score=150.33 Aligned_cols=130 Identities=14% Similarity=0.103 Sum_probs=97.6
Q ss_pred HHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhc--CCCCeEEEEeCCHHHHHHHHHHHHhc---cCCCCcccc-----
Q psy19 298 TIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS--YPHTFFVCGDINEKLVLKTQANVLHN---SGNLNRELK----- 367 (494)
Q Consensus 298 ~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~--~~~~~v~G~Did~~al~~Ar~Nl~~~---g~~~~~~~~----- 367 (494)
.+...++......++.+|||+|||||+++++++.. +++..|+|+|+++.+++.|+.|+..+ ++ ...
T Consensus 38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~----~~~~~~~~ 113 (250)
T 1o9g_A 38 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGL----TARELERR 113 (250)
T ss_dssp HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHH----HHHHHHHH
T ss_pred HHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccc----cccchhhh
Confidence 44444444433346679999999999999999887 66679999999999999999999865 32 111
Q ss_pred --------------------ee-------------eeeeccccccC-----CCCCeeEEEEcCCCccccCCc-cchHHHH
Q psy19 368 --------------------VS-------------PLVCNVRQLCF-----KPACVDGIVTDLPFGKRVGSK-SNNFLLY 408 (494)
Q Consensus 368 --------------------i~-------------~~~~Da~~l~~-----~~~~~D~IVtNPPYG~r~~~~-~~~~~ly 408 (494)
+. +.++|+.+... ...+||+|++||||+...... ......+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~ 193 (250)
T 1o9g_A 114 EQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPV 193 (250)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHH
T ss_pred hhhhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHH
Confidence 55 88999887531 334899999999998543211 1235678
Q ss_pred HHHHHHHhhcccCCCcEEEEEecC
Q psy19 409 RLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 409 ~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
..+++++.++|+|| |+++++...
T Consensus 194 ~~~l~~~~~~Lkpg-G~l~~~~~~ 216 (250)
T 1o9g_A 194 AGLLRSLASALPAH-AVIAVTDRS 216 (250)
T ss_dssp HHHHHHHHHHSCTT-CEEEEEESS
T ss_pred HHHHHHHHHhcCCC-cEEEEeCcc
Confidence 89999999999999 999985444
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.9e-16 Score=164.52 Aligned_cols=172 Identities=17% Similarity=0.168 Sum_probs=120.7
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcC-------------CCCeEEEEeCCHHHHHHHHHHHHhccCC
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY-------------PHTFFVCGDINEKLVLKTQANVLHNSGN 361 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~-------------~~~~v~G~Did~~al~~Ar~Nl~~~g~~ 361 (494)
.+..++..|+.++.+.++.+||||+||||+++++++... +...++|+|+++.+++.|+.|+...|+.
T Consensus 155 TP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~ 234 (445)
T 2okc_A 155 TPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG 234 (445)
T ss_dssp CCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred CcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 345578888888888889999999999999999988642 2367999999999999999999987752
Q ss_pred CCcccceeeeeeccccccCCCCCeeEEEEcCCCccccCCccc---------hHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 362 LNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSN---------NFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 362 ~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~---------~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
. ..+.+.++|+...+.. ..||+||+||||+........ .......|+..+.++|+|| |++++++|+
T Consensus 235 ~---~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~g-G~~a~V~p~ 309 (445)
T 2okc_A 235 T---DRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTG-GRAAVVLPD 309 (445)
T ss_dssp S---SCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEE-EEEEEEEEH
T ss_pred c---CCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccC-CEEEEEECC
Confidence 1 1457899999887543 489999999999864322110 0011346888999999999 999999875
Q ss_pred HHH--------HHHHHHhccccceeeeeE---EEccCCceEEEEEEeeCCC
Q psy19 433 RKH--------LIQALHITSALWKCRKQI---KINMSGMKSFVFILNRTAD 472 (494)
Q Consensus 433 ~~~--------l~~~l~~~~~l~~~~~~~---~v~~Ggl~~~i~v~~~~~~ 472 (494)
..+ +++.+-+... +...-.+ .+++-+..+.|+++.+...
T Consensus 310 ~~L~~~~~~~~iR~~L~~~~~-l~~ii~lp~~~F~~t~v~t~Il~~~k~~~ 359 (445)
T 2okc_A 310 NVLFEAGAGETIRKRLLQDFN-LHTILRLPTGIFYAQGVKANVLFFSKGQP 359 (445)
T ss_dssp HHHHCSTHHHHHHHHHHHHEE-EEEEEECCSSSSSSTTCCEEEEEEEESSC
T ss_pred cccccCcHHHHHHHHHHhcCc-EEEEEeCCCCCccCCCCCEEEEEEECCCC
Confidence 422 2222221111 1111111 1233478889988887653
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-15 Score=156.04 Aligned_cols=175 Identities=14% Similarity=0.176 Sum_probs=115.6
Q ss_pred ccccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCC-----CeEEEEeCCHHHHHHHHHHHHhccCCCC
Q psy19 289 EFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPH-----TFFVCGDINEKLVLKTQANVLHNSGNLN 363 (494)
Q Consensus 289 ~~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~-----~~v~G~Did~~al~~Ar~Nl~~~g~~~~ 363 (494)
+++|.++...++..+-.+....++.+|||||||||++++.++...+. ..++|+|+++.+++.|+.|+...|+
T Consensus 108 ~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--- 184 (344)
T 2f8l_A 108 QMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--- 184 (344)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC---
T ss_pred CCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC---
Confidence 34565444444443333335567789999999999999999876543 6899999999999999999997764
Q ss_pred cccceeeeeeccccccCCCCCeeEEEEcCCCccccCC----------ccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 364 RELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGS----------KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 364 ~~~~i~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~----------~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
.+.+.++|+.... ....||+||+|||||..... .......+..|+..+.+.|+|| |++++++++.
T Consensus 185 ---~~~i~~~D~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~g-G~~~~v~p~~ 259 (344)
T 2f8l_A 185 ---KMTLLHQDGLANL-LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPG-GYLFFLVPDA 259 (344)
T ss_dssp ---CCEEEESCTTSCC-CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEE-EEEEEEEEGG
T ss_pred ---CceEEECCCCCcc-ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCC-CEEEEEECch
Confidence 2578999987643 34689999999999752110 0011123456888999999999 9999998532
Q ss_pred -------HHHHHHHHhccccceeeeeE---EEccCCceEEEEEEeeCCC
Q psy19 434 -------KHLIQALHITSALWKCRKQI---KINMSGMKSFVFILNRTAD 472 (494)
Q Consensus 434 -------~~l~~~l~~~~~l~~~~~~~---~v~~Ggl~~~i~v~~~~~~ 472 (494)
..+.+.+.+.+.. ...-.+ .+.+-+....|+++.+...
T Consensus 260 ~~~~~~~~~ir~~l~~~~~~-~~ii~lp~~~F~~~~~~~~i~vl~k~~~ 307 (344)
T 2f8l_A 260 MFGTSDFAKVDKFIKKNGHI-EGIIKLPETLFKSEQARKSILILEKADV 307 (344)
T ss_dssp GGGSTTHHHHHHHHHHHEEE-EEEEECCGGGSCC-CCCEEEEEEEECCT
T ss_pred hcCCchHHHHHHHHHhCCeE-EEeeeCChhhccCCCCceEEEEEECCCC
Confidence 2344444443311 100011 1223456677777876543
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.9e-15 Score=155.82 Aligned_cols=150 Identities=13% Similarity=0.065 Sum_probs=110.8
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCccc-ceeeeeeccccc-c-C--CCCC
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNREL-KVSPLVCNVRQL-C-F--KPAC 384 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~-~i~~~~~Da~~l-~-~--~~~~ 384 (494)
.++.+|||+|||+|++++.+|... ...|+|+|+++.|++.|++|++.+++ .. ++.++++|+.+. + + ...+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~----~~~~v~~~~~D~~~~l~~~~~~~~~ 285 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHL----DMANHQLVVMDVFDYFKYARRHHLT 285 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTC----CCTTEEEEESCHHHHHHHHHHTTCC
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCC----CccceEEEECCHHHHHHHHHHhCCC
Confidence 578899999999999999999862 24899999999999999999998875 22 578999999874 2 1 2358
Q ss_pred eeEEEEcCCC-ccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH----HHHHHHHHhccccceeeeeEEEccCC
Q psy19 385 VDGIVTDLPF-GKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR----KHLIQALHITSALWKCRKQIKINMSG 459 (494)
Q Consensus 385 ~D~IVtNPPY-G~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~----~~l~~~l~~~~~l~~~~~~~~v~~Gg 459 (494)
||+||+|||| +...+...+....|..++..+.++|+|| |.+++.++.. ..+.+.+.... ...|
T Consensus 286 fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pg-G~l~~~~~~~~~~~~~~~~~i~~~~-----------~~~g 353 (385)
T 2b78_A 286 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSEN-GLIIASTNAANMTVSQFKKQIEKGF-----------GKQK 353 (385)
T ss_dssp EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEE-EEEEEEECCTTSCHHHHHHHHHHHH-----------TTCC
T ss_pred ccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCC-cEEEEEeCCCcCCHHHHHHHHHHHH-----------HHcC
Confidence 9999999998 3322333456677888999999999999 9988877643 33333333211 1112
Q ss_pred ceEEEEEEeeCCCCCCCcccC
Q psy19 460 MKSFVFILNRTADLFDYAIHG 480 (494)
Q Consensus 460 l~~~i~v~~~~~~~~d~~~~~ 480 (494)
.. ++++..+++|||...
T Consensus 354 ~~----~~~~~~~~~D~p~~~ 370 (385)
T 2b78_A 354 HT----YLDLQQLPSDFAVNV 370 (385)
T ss_dssp CE----EEEEECCCTTSCCCT
T ss_pred Cc----EEEeCCCCCCCCCCC
Confidence 32 567899999999853
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.5e-15 Score=161.80 Aligned_cols=173 Identities=17% Similarity=0.190 Sum_probs=119.6
Q ss_pred hHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC------------------CCeEEEEeCCHHHHHHHHHHHHh
Q psy19 296 KPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP------------------HTFFVCGDINEKLVLKTQANVLH 357 (494)
Q Consensus 296 ~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~------------------~~~v~G~Did~~al~~Ar~Nl~~ 357 (494)
+..++..|+.++.+.++.+|+||+||||+|++.++.... ...++|+|+++.+++.|+.|+..
T Consensus 154 P~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l 233 (541)
T 2ar0_A 154 PRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL 233 (541)
T ss_dssp CHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHH
Confidence 345677788888888899999999999999999886421 14799999999999999999998
Q ss_pred ccCCCCcccceeeeeecccccc-CCCCCeeEEEEcCCCccccCCc--cc----hHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 358 NSGNLNRELKVSPLVCNVRQLC-FKPACVDGIVTDLPFGKRVGSK--SN----NFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 358 ~g~~~~~~~~i~~~~~Da~~l~-~~~~~~D~IVtNPPYG~r~~~~--~~----~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
.|+.......+.+.++|+...+ .....||+||+||||+...... .+ ....+-.|+..+.++|+|| |++++++
T Consensus 234 ~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~g-Gr~a~V~ 312 (541)
T 2ar0_A 234 HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG-GRAAVVV 312 (541)
T ss_dssp TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred hCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCC-CEEEEEe
Confidence 7752110112578899987653 3346899999999998654211 00 0112347889999999999 9999999
Q ss_pred cCHHH--------HHHHHHhccccceeeeeEE-----EccCCceEEEEEEeeCCC
Q psy19 431 SDRKH--------LIQALHITSALWKCRKQIK-----INMSGMKSFVFILNRTAD 472 (494)
Q Consensus 431 ~~~~~--------l~~~l~~~~~l~~~~~~~~-----v~~Ggl~~~i~v~~~~~~ 472 (494)
|+..+ +++.+.+... ....+. +++-+..+.|+++.+...
T Consensus 313 p~~~L~~~~~~~~iR~~L~~~~~---l~~ii~Lp~~~F~~t~v~t~Ilvl~k~~~ 364 (541)
T 2ar0_A 313 PDNVLFEGGKGTDIRRDLMDKCH---LHTILRLPTGIFYAQGVKTNVLFFTKGTV 364 (541)
T ss_dssp EHHHHHCCTHHHHHHHHHHHHEE---EEEEEECCSSCSSSCSCCEEEEEEEEBCS
T ss_pred cCcceecCcHHHHHHHHHhhcCC---EEEEEEcCcCcccCCCCcEEEEEEECCCC
Confidence 86532 2233322221 111111 233478889999987553
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=168.86 Aligned_cols=144 Identities=14% Similarity=0.105 Sum_probs=105.6
Q ss_pred cccccchHHHHHHHHHHh----C--CCCCCEEEEEcCCcChHHHHHHhcCC---CCeEEEEeCCHHHHHHH--HHHHHhc
Q psy19 290 FNITTLKPTIAYNMVRLA----S--PIPGDVFLDPMCGGGTIPVECSLSYP---HTFFVCGDINEKLVLKT--QANVLHN 358 (494)
Q Consensus 290 ~~~a~L~e~lAa~ll~la----~--~~~g~~VLDP~CGSGtilIEAA~~~~---~~~v~G~Did~~al~~A--r~Nl~~~ 358 (494)
.|..++++.+|..|+.++ . +.++.+|||||||||+|+++++...+ ...++|+|+|+.+++.| +.|+..+
T Consensus 294 ~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN 373 (878)
T 3s1s_A 294 EGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFP 373 (878)
T ss_dssp CBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTST
T ss_pred CceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHh
Confidence 355667788888888872 2 34688999999999999999998754 35799999999999999 8888764
Q ss_pred cCCCCcccceeeeeecccccc-CCCCCeeEEEEcCCCccccCCccc---------------------hHHHHHHHHHHHh
Q psy19 359 SGNLNRELKVSPLVCNVRQLC-FKPACVDGIVTDLPFGKRVGSKSN---------------------NFLLYRLFLIEIG 416 (494)
Q Consensus 359 g~~~~~~~~i~~~~~Da~~l~-~~~~~~D~IVtNPPYG~r~~~~~~---------------------~~~ly~~fL~~l~ 416 (494)
++..++. ...+...|+.... .....||+||+||||+........ ...+|..|+..+.
T Consensus 374 ~LlhGi~-~~~I~~dD~L~~~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al 452 (878)
T 3s1s_A 374 QLVSSNN-APTITGEDVCSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVT 452 (878)
T ss_dssp TTCBTTB-CCEEECCCGGGCCGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHH
T ss_pred hhhcCCC-cceEEecchhcccccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHH
Confidence 4322221 1245566666532 223689999999999764332111 1135778999999
Q ss_pred hcccCCCcEEEEEecCHHH
Q psy19 417 KIVRPQIGRAILLTSDRKH 435 (494)
Q Consensus 417 rvLkpg~G~lvllt~~~~~ 435 (494)
++|++| |++++++|+.-+
T Consensus 453 ~lLKpG-GrLAfIlP~s~L 470 (878)
T 3s1s_A 453 ELVQDG-TVISAIMPKQYL 470 (878)
T ss_dssp HHSCTT-CEEEEEEETHHH
T ss_pred HhcCCC-cEEEEEEChHHh
Confidence 999999 999999998654
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-15 Score=139.25 Aligned_cols=128 Identities=13% Similarity=0.116 Sum_probs=97.8
Q ss_pred cccchHHHHHHHHHHhCC---CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccce
Q psy19 292 ITTLKPTIAYNMVRLASP---IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKV 368 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~---~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i 368 (494)
..|..+.++..++..... .++.+|||+|||+|.++++++.. +...++|+|+++.+++.|++|+..+++ .++
T Consensus 22 ~rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~v 95 (189)
T 3p9n_A 22 TRPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGL-----SGA 95 (189)
T ss_dssp C---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTC-----SCE
T ss_pred CccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCC-----Cce
Confidence 334455555555554422 47889999999999999988775 345899999999999999999998764 357
Q ss_pred eeeeecccccc--CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhh--cccCCCcEEEEEecCH
Q psy19 369 SPLVCNVRQLC--FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGK--IVRPQIGRAILLTSDR 433 (494)
Q Consensus 369 ~~~~~Da~~l~--~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~r--vLkpg~G~lvllt~~~ 433 (494)
+++++|+.+++ +.+++||+|++||||.... ..+..++..+.+ +|+|| |.+++.++..
T Consensus 96 ~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~~-------~~~~~~l~~~~~~~~L~pg-G~l~~~~~~~ 156 (189)
T 3p9n_A 96 TLRRGAVAAVVAAGTTSPVDLVLADPPYNVDS-------ADVDAILAALGTNGWTREG-TVAVVERATT 156 (189)
T ss_dssp EEEESCHHHHHHHCCSSCCSEEEECCCTTSCH-------HHHHHHHHHHHHSSSCCTT-CEEEEEEETT
T ss_pred EEEEccHHHHHhhccCCCccEEEECCCCCcch-------hhHHHHHHHHHhcCccCCC-eEEEEEecCC
Confidence 89999998873 3357899999999987431 235567778888 99999 9999877654
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-15 Score=163.37 Aligned_cols=173 Identities=14% Similarity=0.122 Sum_probs=119.5
Q ss_pred cccccccchHHHHHHHHHHhC----CCCCCEEEEEcCCcChHHHHHHhcC---CCCeEEEEeCCHHHHHHHHHHHHhccC
Q psy19 288 VEFNITTLKPTIAYNMVRLAS----PIPGDVFLDPMCGGGTIPVECSLSY---PHTFFVCGDINEKLVLKTQANVLHNSG 360 (494)
Q Consensus 288 ~~~~~a~L~e~lAa~ll~la~----~~~g~~VLDP~CGSGtilIEAA~~~---~~~~v~G~Did~~al~~Ar~Nl~~~g~ 360 (494)
.+++|.+ ++..|+.++. +.++.+|+||+||||+|+++++... ....++|+|+++.++.+|+.|+..+|+
T Consensus 198 ~fyTP~~----Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi 273 (542)
T 3lkd_A 198 EFYTPQP----VAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGV 273 (542)
T ss_dssp SCCCCHH----HHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred eecccHH----HHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCC
Confidence 4555544 5555555554 5678899999999999999998764 246899999999999999999998875
Q ss_pred CCCcccceeeeeeccccc--c-CCCCCeeEEEEcCCCccccCCccch---------------HHHHHHHHHHHhhccc-C
Q psy19 361 NLNRELKVSPLVCNVRQL--C-FKPACVDGIVTDLPFGKRVGSKSNN---------------FLLYRLFLIEIGKIVR-P 421 (494)
Q Consensus 361 ~~~~~~~i~~~~~Da~~l--~-~~~~~~D~IVtNPPYG~r~~~~~~~---------------~~ly~~fL~~l~rvLk-p 421 (494)
. ...+.+.++|+... | .....||+||+||||+...+..... ....-.|+..+.+.|+ +
T Consensus 274 ~---~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~ 350 (542)
T 3lkd_A 274 P---IENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQD 350 (542)
T ss_dssp C---GGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTT
T ss_pred C---cCccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCC
Confidence 2 13567899998876 3 2346899999999998654321100 0011258899999999 9
Q ss_pred CCcEEEEEecCHHHH--------HHHHHhccccceeeeeEE-----EccCCceEEEEEEeeCC
Q psy19 422 QIGRAILLTSDRKHL--------IQALHITSALWKCRKQIK-----INMSGMKSFVFILNRTA 471 (494)
Q Consensus 422 g~G~lvllt~~~~~l--------~~~l~~~~~l~~~~~~~~-----v~~Ggl~~~i~v~~~~~ 471 (494)
| |++++|+|+.-++ ++.+-+... ....+. +.+-+..+.|+++.+..
T Consensus 351 g-Gr~a~VlP~g~Lf~~~~~~~iRk~Lle~~~---l~~II~LP~~lF~~t~i~t~Ilvl~K~k 409 (542)
T 3lkd_A 351 N-GVMAIVLPHGVLFRGNAEGTIRKALLEEGA---IDTVIGLPANIFFNTSIPTTVIILKKNR 409 (542)
T ss_dssp T-CEEEEEEETHHHHCCTHHHHHHHHHHHTTC---EEEEEECCSSCSSSCCCCEEEEEECSSC
T ss_pred c-eeEEEEecchHhhCCchhHHHHHHHHhCCc---eeEEEEccccccCCCCCcEEEEEEecCC
Confidence 9 9999999976432 222222221 111111 23456778888887754
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=9.4e-15 Score=145.16 Aligned_cols=105 Identities=12% Similarity=0.066 Sum_probs=88.7
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEE
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGI 388 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~I 388 (494)
.+++.+|||+|||+|++++.+|...+. .|+|+|+++.+++.|++|+..+++ .+++.++++|+.+++. .++||+|
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~----~~~v~~~~~D~~~~~~-~~~fD~V 196 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKV----EDRMSAYNMDNRDFPG-ENIADRI 196 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTC----TTTEEEECSCTTTCCC-CSCEEEE
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCC----CceEEEEECCHHHhcc-cCCccEE
Confidence 357899999999999999999988543 799999999999999999998875 3457899999999865 5789999
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
++|||++. ..++.++.++|+|| |.+++.+..
T Consensus 197 i~~~p~~~------------~~~l~~~~~~Lkpg-G~l~~~~~~ 227 (278)
T 2frn_A 197 LMGYVVRT------------HEFIPKALSIAKDG-AIIHYHNTV 227 (278)
T ss_dssp EECCCSSG------------GGGHHHHHHHEEEE-EEEEEEEEE
T ss_pred EECCchhH------------HHHHHHHHHHCCCC-eEEEEEEee
Confidence 99999754 24555788999999 999886654
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.7e-15 Score=152.41 Aligned_cols=149 Identities=11% Similarity=-0.008 Sum_probs=109.2
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-CCCCCeeEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-FKPACVDGI 388 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~~~~~~D~I 388 (494)
++|.+|||+|||+|.+++.+|.. ++.|+|+|+++.+++.|++|++.+++. . .+.++|++++. ...+.||+|
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~----~--~~~~~D~~~~l~~~~~~fD~I 284 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLR----V--DIRHGEALPTLRGLEGPFHHV 284 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC----C--EEEESCHHHHHHTCCCCEEEE
T ss_pred cCCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCC----C--cEEEccHHHHHHHhcCCCCEE
Confidence 46899999999999999999987 566999999999999999999998762 1 45689998762 212459999
Q ss_pred EEcCCCccc-cCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH----HHHHHHHHhccccceeeeeEEEccCCceEE
Q psy19 389 VTDLPFGKR-VGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR----KHLIQALHITSALWKCRKQIKINMSGMKSF 463 (494)
Q Consensus 389 VtNPPYG~r-~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~----~~l~~~l~~~~~l~~~~~~~~v~~Ggl~~~ 463 (494)
++||||-.. .....+....|..++..+.++|+|| |.+++.++.. ..+.+.+..... . .| ..
T Consensus 285 i~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpG-G~Lv~~s~s~~~~~~~f~~~v~~a~~--~---------~g--~~ 350 (393)
T 4dmg_A 285 LLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEE-GFLWLSSCSYHLRLEDLLEVARRAAA--D---------LG--RR 350 (393)
T ss_dssp EECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEE-EEEEEEECCTTSCHHHHHHHHHHHHH--H---------HT--CC
T ss_pred EECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEECCCCCCHHHHHHHHHHHHH--H---------hC--Ce
Confidence 999997332 1122234567889999999999999 9999877743 234444432210 0 11 23
Q ss_pred EEEEeeCCCCCCCcccC
Q psy19 464 VFILNRTADLFDYAIHG 480 (494)
Q Consensus 464 i~v~~~~~~~~d~~~~~ 480 (494)
+.+++...+++|||+..
T Consensus 351 ~~i~~~~~~~~DhP~~~ 367 (393)
T 4dmg_A 351 LRVHRVTYQPEDHPWSL 367 (393)
T ss_dssp EEEEEEEECCTTSCEET
T ss_pred EEEEEEcCCCCCCCcCC
Confidence 45567788999999854
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.7e-15 Score=152.68 Aligned_cols=126 Identities=13% Similarity=0.144 Sum_probs=97.5
Q ss_pred HHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC
Q psy19 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380 (494)
Q Consensus 301 a~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~ 380 (494)
..++......++.+|||+|||+|.++++++..+|+..|+|+|+++.+++.|++|+..+++.. ...+.+..+|+.+ ++
T Consensus 212 ~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~--~~~v~~~~~D~~~-~~ 288 (375)
T 4dcm_A 212 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEA--LDRCEFMINNALS-GV 288 (375)
T ss_dssp HHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGG--GGGEEEEECSTTT-TC
T ss_pred HHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCc--CceEEEEechhhc-cC
Confidence 34555556666789999999999999999999988999999999999999999999887521 1246779999987 45
Q ss_pred CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
++++||+|++||||........ .....+++++.++|+|| |++++++...
T Consensus 289 ~~~~fD~Ii~nppfh~~~~~~~---~~~~~~l~~~~~~Lkpg-G~l~iv~n~~ 337 (375)
T 4dcm_A 289 EPFRFNAVLCNPPFHQQHALTD---NVAWEMFHHARRCLKIN-GELYIVANRH 337 (375)
T ss_dssp CTTCEEEEEECCCC-------C---CHHHHHHHHHHHHEEEE-EEEEEEEETT
T ss_pred CCCCeeEEEECCCcccCcccCH---HHHHHHHHHHHHhCCCC-cEEEEEEECC
Confidence 5578999999999974322111 12446788999999999 9999987754
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.2e-15 Score=146.70 Aligned_cols=135 Identities=13% Similarity=0.057 Sum_probs=103.9
Q ss_pred ccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 291 NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 291 ~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
.|.|..+.+...++......++.+|||+|||+|.+++.++.. ++..++|+|+++.+++.|++|+..+++ ..++.+
T Consensus 103 ipr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l----~~~v~~ 177 (284)
T 1nv8_A 103 VPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGV----SDRFFV 177 (284)
T ss_dssp CCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTC----TTSEEE
T ss_pred ecChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC----CCceEE
Confidence 467778888888887665456779999999999999999988 889999999999999999999998765 345789
Q ss_pred eeeccccccCCCCCe---eEEEEcCCCccccCC------ccchHHHH-----HHHHHHHh-hcccCCCcEEEEEecCH
Q psy19 371 LVCNVRQLCFKPACV---DGIVTDLPFGKRVGS------KSNNFLLY-----RLFLIEIG-KIVRPQIGRAILLTSDR 433 (494)
Q Consensus 371 ~~~Da~~l~~~~~~~---D~IVtNPPYG~r~~~------~~~~~~ly-----~~fL~~l~-rvLkpg~G~lvllt~~~ 433 (494)
+++|+.+. ++ ++| |+||+||||...... ......++ ..+++++. +.|+|| |.+++..+..
T Consensus 178 ~~~D~~~~-~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pg-G~l~~e~~~~ 252 (284)
T 1nv8_A 178 RKGEFLEP-FK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSG-KIVLMEIGED 252 (284)
T ss_dssp EESSTTGG-GG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTT-CEEEEECCTT
T ss_pred EECcchhh-cc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCC-CEEEEEECch
Confidence 99999874 22 478 999999999743210 00011111 14566788 999999 9999877653
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.58 E-value=8.4e-15 Score=134.17 Aligned_cols=126 Identities=15% Similarity=0.150 Sum_probs=95.0
Q ss_pred cchHHHHHHHHHHhC-CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 294 TLKPTIAYNMVRLAS-PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 294 ~L~e~lAa~ll~la~-~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
|..+.+...++.... ..++.+|||+|||+|.++++++.. +...++|+|+++.+++.|++|+..+++ ..++.+++
T Consensus 13 p~~~~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~~~~ 87 (177)
T 2esr_A 13 PTSDKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKA----ENRFTLLK 87 (177)
T ss_dssp -----CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTC----GGGEEEEC
T ss_pred cCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCC----CCceEEEE
Confidence 344556666666655 667889999999999999998887 446999999999999999999997654 44678999
Q ss_pred eccccc-cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHh--hcccCCCcEEEEEecCHH
Q psy19 373 CNVRQL-CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIG--KIVRPQIGRAILLTSDRK 434 (494)
Q Consensus 373 ~Da~~l-~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~--rvLkpg~G~lvllt~~~~ 434 (494)
+|+.+. +...+.||+|++||||... .+..++..+. ++|+|| |.+++.++...
T Consensus 88 ~d~~~~~~~~~~~fD~i~~~~~~~~~---------~~~~~~~~l~~~~~L~~g-G~l~~~~~~~~ 142 (177)
T 2esr_A 88 MEAERAIDCLTGRFDLVFLDPPYAKE---------TIVATIEALAAKNLLSEQ-VMVVCETDKTV 142 (177)
T ss_dssp SCHHHHHHHBCSCEEEEEECCSSHHH---------HHHHHHHHHHHTTCEEEE-EEEEEEEETTC
T ss_pred CcHHHhHHhhcCCCCEEEECCCCCcc---------hHHHHHHHHHhCCCcCCC-cEEEEEECCcc
Confidence 999874 4333579999999998521 1334445555 999999 99998877654
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.58 E-value=9.1e-15 Score=134.37 Aligned_cols=129 Identities=13% Similarity=0.140 Sum_probs=100.7
Q ss_pred ccccchHHHHHHHHHHhC-CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCccccee
Q psy19 291 NITTLKPTIAYNMVRLAS-PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVS 369 (494)
Q Consensus 291 ~~a~L~e~lAa~ll~la~-~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~ 369 (494)
.+.|..+.++..++.... ..++.+|||+|||+|.++++++.. +...++|+|+++.+++.|++|+..+++ ..++.
T Consensus 23 ~~rp~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~ 97 (187)
T 2fhp_A 23 NTRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITKE----PEKFE 97 (187)
T ss_dssp SSCCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHTC----GGGEE
T ss_pred CcCcCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHhCC----CcceE
Confidence 355677888888887774 457889999999999999988874 346899999999999999999998764 34678
Q ss_pred eeeecccccc----CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHH--hhcccCCCcEEEEEecCHH
Q psy19 370 PLVCNVRQLC----FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEI--GKIVRPQIGRAILLTSDRK 434 (494)
Q Consensus 370 ~~~~Da~~l~----~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l--~rvLkpg~G~lvllt~~~~ 434 (494)
++++|+.+.. ..+++||+|++||||... ... .++..+ .++|+|| |.+++.++...
T Consensus 98 ~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~-----~~~----~~~~~l~~~~~L~~g-G~l~~~~~~~~ 158 (187)
T 2fhp_A 98 VRKMDANRALEQFYEEKLQFDLVLLDPPYAKQ-----EIV----SQLEKMLERQLLTNE-AVIVCETDKTV 158 (187)
T ss_dssp EEESCHHHHHHHHHHTTCCEEEEEECCCGGGC-----CHH----HHHHHHHHTTCEEEE-EEEEEEEETTC
T ss_pred EEECcHHHHHHHHHhcCCCCCEEEECCCCCch-----hHH----HHHHHHHHhcccCCC-CEEEEEeCCcc
Confidence 9999998742 124789999999998732 122 233344 8899999 99998877654
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=8.7e-15 Score=152.44 Aligned_cols=159 Identities=17% Similarity=0.186 Sum_probs=112.8
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
..+.++..|+.++...++.+|||||||+|.++++++... +...++|+|+++.+++.| ..+.+.++
T Consensus 23 TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a--------------~~~~~~~~ 88 (421)
T 2ih2_A 23 TPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------------PWAEGILA 88 (421)
T ss_dssp CCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--------------TTEEEEES
T ss_pred CCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC--------------CCCcEEeC
Confidence 457788888888876667799999999999999998764 467999999999998776 13578999
Q ss_pred ccccccCCCCCeeEEEEcCCCccccCC-------ccchH--------------HHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 374 NVRQLCFKPACVDGIVTDLPFGKRVGS-------KSNNF--------------LLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 374 Da~~l~~~~~~~D~IVtNPPYG~r~~~-------~~~~~--------------~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
|+...+. .+.||+||+||||+..... ..... ++|..|++.+.++|+|| |++++++++
T Consensus 89 D~~~~~~-~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~-G~~~~i~p~ 166 (421)
T 2ih2_A 89 DFLLWEP-GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPG-GVLVFVVPA 166 (421)
T ss_dssp CGGGCCC-SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEE-EEEEEEEEG
T ss_pred ChhhcCc-cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCC-CEEEEEECh
Confidence 9988753 3689999999999865331 11122 25668999999999999 999999886
Q ss_pred H-------HHHHHHHHhccccceeeeeEE--EccCCceEEEEEEeeCC
Q psy19 433 R-------KHLIQALHITSALWKCRKQIK--INMSGMKSFVFILNRTA 471 (494)
Q Consensus 433 ~-------~~l~~~l~~~~~l~~~~~~~~--v~~Ggl~~~i~v~~~~~ 471 (494)
. ..+.+.+.+.+. .....+. +...+..+.++++.+..
T Consensus 167 ~~l~~~~~~~lr~~l~~~~~--~~i~~l~~~F~~~~~~~~il~~~k~~ 212 (421)
T 2ih2_A 167 TWLVLEDFALLREFLAREGK--TSVYYLGEVFPQKKVSAVVIRFQKSG 212 (421)
T ss_dssp GGGTCGGGHHHHHHHHHHSE--EEEEEEESCSTTCCCCEEEEEEESSS
T ss_pred HHhcCccHHHHHHHHHhcCC--eEEEECCCCCCCCCccEEEEEEEeCC
Confidence 3 335555554432 1111111 12334556666666543
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.57 E-value=7.2e-15 Score=138.70 Aligned_cols=125 Identities=12% Similarity=0.110 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHhCC-CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 296 KPTIAYNMVRLASP-IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 296 ~e~lAa~ll~la~~-~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
.+.+...++..... .++.+|||+|||+|.++++++... ...|+|+|+++.+++.|++|+..+++. ..++.++++|
T Consensus 37 ~~~~~~~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~---~~~v~~~~~d 112 (201)
T 2ift_A 37 GDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCS---SEQAEVINQS 112 (201)
T ss_dssp -CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCC---TTTEEEECSC
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHHhCCC---ccceEEEECC
Confidence 33444444444332 267899999999999999877663 258999999999999999999987641 1357899999
Q ss_pred cccccC--CCCC-eeEEEEcCCCccccCCccchHHHHHHHHHHH--hhcccCCCcEEEEEecCHH
Q psy19 375 VRQLCF--KPAC-VDGIVTDLPFGKRVGSKSNNFLLYRLFLIEI--GKIVRPQIGRAILLTSDRK 434 (494)
Q Consensus 375 a~~l~~--~~~~-~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l--~rvLkpg~G~lvllt~~~~ 434 (494)
+.++.. .+++ ||+|++||||.. + . +..+++.+ .++|+|| |.+++.+....
T Consensus 113 ~~~~~~~~~~~~~fD~I~~~~~~~~--~---~----~~~~l~~~~~~~~Lkpg-G~l~i~~~~~~ 167 (201)
T 2ift_A 113 SLDFLKQPQNQPHFDVVFLDPPFHF--N---L----AEQAISLLCENNWLKPN-ALIYVETEKDK 167 (201)
T ss_dssp HHHHTTSCCSSCCEEEEEECCCSSS--C---H----HHHHHHHHHHTTCEEEE-EEEEEEEESSS
T ss_pred HHHHHHhhccCCCCCEEEECCCCCC--c---c----HHHHHHHHHhcCccCCC-cEEEEEECCCC
Confidence 987632 2468 999999999862 1 2 34455566 6789999 99988776543
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-13 Score=127.20 Aligned_cols=122 Identities=16% Similarity=0.159 Sum_probs=100.3
Q ss_pred HHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCccc-ceeeeeeccc
Q psy19 298 TIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNREL-KVSPLVCNVR 376 (494)
Q Consensus 298 ~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~-~i~~~~~Da~ 376 (494)
..+..++......++.+|||+|||+|.+++.++.. +..++|+|+++.+++.|++|+..+++ .. ++.+.++|+.
T Consensus 39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~----~~~~~~~~~~d~~ 112 (194)
T 1dus_A 39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNL----DNYDIRVVHSDLY 112 (194)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTC----TTSCEEEEECSTT
T ss_pred hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCC----CccceEEEECchh
Confidence 45666777778788899999999999999998887 68999999999999999999987764 22 3789999988
Q ss_pred cccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHH
Q psy19 377 QLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRK 434 (494)
Q Consensus 377 ~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~ 434 (494)
+. +.+++||+|++||||... ...+..+++.+.++|+|| |.+++.++...
T Consensus 113 ~~-~~~~~~D~v~~~~~~~~~-------~~~~~~~l~~~~~~L~~g-G~l~~~~~~~~ 161 (194)
T 1dus_A 113 EN-VKDRKYNKIITNPPIRAG-------KEVLHRIIEEGKELLKDN-GEIWVVIQTKQ 161 (194)
T ss_dssp TT-CTTSCEEEEEECCCSTTC-------HHHHHHHHHHHHHHEEEE-EEEEEEEESTH
T ss_pred cc-cccCCceEEEECCCcccc-------hhHHHHHHHHHHHHcCCC-CEEEEEECCCC
Confidence 74 345689999999998631 223567888999999999 99999888643
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.56 E-value=7.5e-14 Score=131.07 Aligned_cols=133 Identities=11% Similarity=0.029 Sum_probs=108.0
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
..+.+.+.++......++.+|||+|||+|.+++.++..++...++|+|+++.+++.|++|+..+++ .++.++++|
T Consensus 24 ~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~v~~~~~d 98 (204)
T 3e05_A 24 TKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-----RNVTLVEAF 98 (204)
T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-----TTEEEEECC
T ss_pred ChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CcEEEEeCC
Confidence 667777788888888899999999999999999999998779999999999999999999998764 357899999
Q ss_pred cccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHH---HHHHHHHhcc
Q psy19 375 VRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRK---HLIQALHITS 444 (494)
Q Consensus 375 a~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~---~l~~~l~~~~ 444 (494)
+.+.......||+|++++++. + +..+++++.++|+|| |++++.+.... .+.+.+.+.+
T Consensus 99 ~~~~~~~~~~~D~i~~~~~~~-------~----~~~~l~~~~~~Lkpg-G~l~~~~~~~~~~~~~~~~l~~~g 159 (204)
T 3e05_A 99 APEGLDDLPDPDRVFIGGSGG-------M----LEEIIDAVDRRLKSE-GVIVLNAVTLDTLTKAVEFLEDHG 159 (204)
T ss_dssp TTTTCTTSCCCSEEEESCCTT-------C----HHHHHHHHHHHCCTT-CEEEEEECBHHHHHHHHHHHHHTT
T ss_pred hhhhhhcCCCCCEEEECCCCc-------C----HHHHHHHHHHhcCCC-eEEEEEecccccHHHHHHHHHHCC
Confidence 976533336799999998764 1 456777899999999 99999877543 2344444444
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-13 Score=127.12 Aligned_cols=116 Identities=10% Similarity=-0.005 Sum_probs=88.1
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-CCCCCee
Q psy19 308 SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-FKPACVD 386 (494)
Q Consensus 308 ~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~~~~~~D 386 (494)
...++.+|||+|||+|.+++.+|.. +..|+|+|+++.+++.|++|+..+++ .++.+++.|+..++ +.+++||
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~-----~~v~~~~~~~~~l~~~~~~~fD 91 (185)
T 3mti_A 19 VLDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGI-----ENTELILDGHENLDHYVREPIR 91 (185)
T ss_dssp TCCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTC-----CCEEEEESCGGGGGGTCCSCEE
T ss_pred hCCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEeCcHHHHHhhccCCcC
Confidence 4568899999999999999999987 78999999999999999999998764 35688888887753 3457899
Q ss_pred EEEEcCCCccccCC-ccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 387 GIVTDLPFGKRVGS-KSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 387 ~IVtNPPYG~r~~~-~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+|++|+||-..... ..........+++++.++|||| |+++++..
T Consensus 92 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 136 (185)
T 3mti_A 92 AAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVG-GRLAIMIY 136 (185)
T ss_dssp EEEEEEC-----------CHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred EEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCC-cEEEEEEe
Confidence 99999887432110 0012233456788999999999 99988754
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-14 Score=136.57 Aligned_cols=125 Identities=11% Similarity=0.105 Sum_probs=93.0
Q ss_pred cchHHHHHHHHHHhCCC-CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 294 TLKPTIAYNMVRLASPI-PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~-~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
|..+.+...++.+.... ++.+|||+|||+|.++++++... ...|+|+|+++.+++.|++|+..+++ .++.+++
T Consensus 36 p~~~~~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~-~~~V~~vD~s~~~l~~a~~~~~~~~~-----~~v~~~~ 109 (202)
T 2fpo_A 36 PTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLATLKA-----GNARVVN 109 (202)
T ss_dssp --CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTC-----CSEEEEC
T ss_pred CCHHHHHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcC-CCEEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEE
Confidence 34455555665554432 67899999999999999877763 24899999999999999999998764 3578999
Q ss_pred eccccc-cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHh--hcccCCCcEEEEEecCHH
Q psy19 373 CNVRQL-CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIG--KIVRPQIGRAILLTSDRK 434 (494)
Q Consensus 373 ~Da~~l-~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~--rvLkpg~G~lvllt~~~~ 434 (494)
+|+.+. +...++||+|++||||.. + . +..+++.+. ++|+|| |.+++.+....
T Consensus 110 ~D~~~~~~~~~~~fD~V~~~~p~~~--~---~----~~~~l~~l~~~~~L~pg-G~l~i~~~~~~ 164 (202)
T 2fpo_A 110 SNAMSFLAQKGTPHNIVFVDPPFRR--G---L----LEETINLLEDNGWLADE-ALIYVESEVEN 164 (202)
T ss_dssp SCHHHHHSSCCCCEEEEEECCSSST--T---T----HHHHHHHHHHTTCEEEE-EEEEEEEEGGG
T ss_pred CCHHHHHhhcCCCCCEEEECCCCCC--C---c----HHHHHHHHHhcCccCCC-cEEEEEECCCc
Confidence 999874 544568999999999872 1 1 334444554 469999 99888766543
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-13 Score=140.77 Aligned_cols=115 Identities=17% Similarity=0.114 Sum_probs=91.1
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCccc-ceeeeeeccccccCC----CC
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNREL-KVSPLVCNVRQLCFK----PA 383 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~-~i~~~~~Da~~l~~~----~~ 383 (494)
..++.+|||+|||+|.+++.+|.. ++.|+|+|+++.+++.|++|+..+++ .. ++.++++|+.++... ..
T Consensus 151 ~~~~~~VLDlgcGtG~~sl~la~~--ga~V~~VD~s~~al~~a~~n~~~~gl----~~~~v~~i~~D~~~~l~~~~~~~~ 224 (332)
T 2igt_A 151 ADRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGL----EQAPIRWICEDAMKFIQREERRGS 224 (332)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTC----TTSCEEEECSCHHHHHHHHHHHTC
T ss_pred cCCCCcEEEcccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCC----CccceEEEECcHHHHHHHHHhcCC
Confidence 346789999999999999999986 56999999999999999999998875 22 478999999876321 36
Q ss_pred CeeEEEEcCCC-cccc-CCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 384 CVDGIVTDLPF-GKRV-GSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 384 ~~D~IVtNPPY-G~r~-~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+||+||+|||| +... .........|..++..+.++|+|| |.+++.+
T Consensus 225 ~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~Lkpg-G~lli~~ 272 (332)
T 2igt_A 225 TYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPK-ALGLVLT 272 (332)
T ss_dssp CBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTT-CCEEEEE
T ss_pred CceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcC-cEEEEEE
Confidence 89999999995 4321 111234566888999999999999 9866654
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.55 E-value=4.2e-14 Score=134.08 Aligned_cols=121 Identities=16% Similarity=0.193 Sum_probs=95.9
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc--CCCCCeeE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC--FKPACVDG 387 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~--~~~~~~D~ 387 (494)
.++.+|||+|||+|.+++.+|...|+..++|+|+++.+++.|++|+..+++ .++.++++|+..++ +++++||+
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~~~D~ 114 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-----PNIKLLWVDGSDLTDYFEDGEIDR 114 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-----SSEEEEECCSSCGGGTSCTTCCSE
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-----CCEEEEeCCHHHHHhhcCCCCCCE
Confidence 457899999999999999999998889999999999999999999998764 35789999999876 66678999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHH
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHL 436 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l 436 (494)
|++|+|-......+......+..++..+.++|+|| |.+++.+......
T Consensus 115 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~~~~~ 162 (214)
T 1yzh_A 115 LYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPEN-GEIHFKTDNRGLF 162 (214)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTT-CEEEEEESCHHHH
T ss_pred EEEECCCCccccchhhhccCCHHHHHHHHHHcCCC-cEEEEEeCCHHHH
Confidence 99998843111001001113567888999999999 9999988765433
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=4.1e-14 Score=146.78 Aligned_cols=152 Identities=14% Similarity=0.112 Sum_probs=111.0
Q ss_pred hCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC----CC
Q psy19 307 ASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF----KP 382 (494)
Q Consensus 307 a~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~----~~ 382 (494)
+.. ++.+|||+|||+|++++.+|.. ...|+|+|+++.+++.|++|+..+++ .. +.++++|+.++.. ..
T Consensus 206 ~~~-~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~----~~-~~~~~~d~~~~~~~~~~~~ 277 (382)
T 1wxx_A 206 ERF-RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGL----GN-VRVLEANAFDLLRRLEKEG 277 (382)
T ss_dssp GGC-CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTC----TT-EEEEESCHHHHHHHHHHTT
T ss_pred Hhc-CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCC----CC-ceEEECCHHHHHHHHHhcC
Confidence 344 7789999999999999999987 57899999999999999999998875 22 7899999987632 14
Q ss_pred CCeeEEEEcCCCcccc-CCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH----HHHHHHHHhccccceeeeeEEEcc
Q psy19 383 ACVDGIVTDLPFGKRV-GSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR----KHLIQALHITSALWKCRKQIKINM 457 (494)
Q Consensus 383 ~~~D~IVtNPPYG~r~-~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~----~~l~~~l~~~~~l~~~~~~~~v~~ 457 (494)
.+||+|++|||+.... .........|..++..+.++|+|| |.+++.++.. ..+...+...- ..
T Consensus 278 ~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~~~~~~~~~~~~i~~~~-----------~~ 345 (382)
T 1wxx_A 278 ERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEG-GILATASCSHHMTEPLFYAMVAEAA-----------QD 345 (382)
T ss_dssp CCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEE-EEEEEEECCTTSCHHHHHHHHHHHH-----------HH
T ss_pred CCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEECCCCCCHHHHHHHHHHHH-----------HH
Confidence 6899999999974332 222234566888999999999999 9999887743 22333332110 00
Q ss_pred CCceEEEEEEeeCCCCCCCcccC
Q psy19 458 SGMKSFVFILNRTADLFDYAIHG 480 (494)
Q Consensus 458 Ggl~~~i~v~~~~~~~~d~~~~~ 480 (494)
.|. .+.+++...+++|||...
T Consensus 346 ~g~--~~~~i~~~~~~~d~p~~~ 366 (382)
T 1wxx_A 346 AHR--LLRVVEKRGQPFDHPVLL 366 (382)
T ss_dssp TTC--CEEEEEEECCCTTSCCBT
T ss_pred cCC--eEEEEEcCCCCCCCCCCC
Confidence 122 234556778899999853
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.1e-14 Score=146.61 Aligned_cols=152 Identities=15% Similarity=0.094 Sum_probs=110.9
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC----CCCCe
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF----KPACV 385 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~----~~~~~ 385 (494)
+++.+|||+|||+|++++.+|.. ....|+|+|+++.+++.|++|+..+++ ..++.++++|+.++.. ...+|
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~----~~~v~~~~~d~~~~~~~~~~~~~~f 290 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGV----EDRMKFIVGSAFEEMEKLQKKGEKF 290 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTC----GGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred hCCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCC----CccceEEECCHHHHHHHHHhhCCCC
Confidence 47889999999999999999986 235899999999999999999998865 3367899999987632 24689
Q ss_pred eEEEEcCCCccccC-CccchHHHHHHHHHHHhhcccCCCcEEEEEecCH----HHHHHHHHhccccceeeeeEEEccCCc
Q psy19 386 DGIVTDLPFGKRVG-SKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR----KHLIQALHITSALWKCRKQIKINMSGM 460 (494)
Q Consensus 386 D~IVtNPPYG~r~~-~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~----~~l~~~l~~~~~l~~~~~~~~v~~Ggl 460 (494)
|+|++||||..... ........|..++..+.++|+|| |.+++.+++. ..+...+.... . ..
T Consensus 291 D~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~~~~~~~~~~~~~~v~~~~---~----------~~ 356 (396)
T 2as0_A 291 DIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDG-GILVTCSCSQHVDLQMFKDMIIAAG---A----------KA 356 (396)
T ss_dssp EEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEE-EEEEEEECCTTSCHHHHHHHHHHHH---H----------HT
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEEECCCCCCHHHHHHHHHHHH---H----------Hc
Confidence 99999999754321 11123356788999999999999 9999887753 22333332211 0 01
Q ss_pred eEEEEEEe-eCCCCCCCcccC
Q psy19 461 KSFVFILN-RTADLFDYAIHG 480 (494)
Q Consensus 461 ~~~i~v~~-~~~~~~d~~~~~ 480 (494)
...+.++. ...+++|||...
T Consensus 357 ~~~~~~i~~~~~~~~d~p~~~ 377 (396)
T 2as0_A 357 GKFLKMLEPYRTQAPDHPILM 377 (396)
T ss_dssp TEEEEESSCBBCSCTTSCCBT
T ss_pred CCeEEEEeccCCCCCCCCcCC
Confidence 12345556 778999999853
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-13 Score=133.19 Aligned_cols=134 Identities=19% Similarity=0.204 Sum_probs=109.1
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
..++.+..+..++.++...++.+|||+|||+|.+++.++.. .|+..++|+|+++.+++.|++|++.+++ .+++.+
T Consensus 74 ~~~~~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~----~~~v~~ 149 (255)
T 3mb5_A 74 PQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF----DDRVTI 149 (255)
T ss_dssp SCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTC----TTTEEE
T ss_pred cccccHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCC----CCceEE
Confidence 44567777888899999999999999999999999999987 7788999999999999999999998765 345789
Q ss_pred eeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHH---HHHHHhcc
Q psy19 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHL---IQALHITS 444 (494)
Q Consensus 371 ~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l---~~~l~~~~ 444 (494)
.++|+.+. +++++||+|++|||.. ..+++++.++|+|| |++++.++..... .+.+.+.+
T Consensus 150 ~~~d~~~~-~~~~~~D~v~~~~~~~-------------~~~l~~~~~~L~~g-G~l~~~~~~~~~~~~~~~~l~~~g 211 (255)
T 3mb5_A 150 KLKDIYEG-IEEENVDHVILDLPQP-------------ERVVEHAAKALKPG-GFFVAYTPCSNQVMRLHEKLREFK 211 (255)
T ss_dssp ECSCGGGC-CCCCSEEEEEECSSCG-------------GGGHHHHHHHEEEE-EEEEEEESSHHHHHHHHHHHHHTG
T ss_pred EECchhhc-cCCCCcCEEEECCCCH-------------HHHHHHHHHHcCCC-CEEEEEECCHHHHHHHHHHHHHcC
Confidence 99999875 5567899999999843 13456789999999 9999998865433 33444443
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-13 Score=142.76 Aligned_cols=127 Identities=20% Similarity=0.136 Sum_probs=101.3
Q ss_pred chHHHHHHHHHHhC--CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 295 LKPTIAYNMVRLAS--PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 295 L~e~lAa~ll~la~--~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
-...+...+..... ..++.+|||+|||+|.+++.++.. +..|+|+|+++.+++.|++|+..+++ .+.+++
T Consensus 215 ~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~------~v~~~~ 286 (381)
T 3dmg_A 215 ASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANAL------KAQALH 286 (381)
T ss_dssp HHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTC------CCEEEE
T ss_pred HHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEE
Confidence 34555666655553 346789999999999999999987 67999999999999999999998764 257899
Q ss_pred eccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 373 CNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 373 ~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
+|+.+.+..+++||+|++||||...... ....+..++.++.++|+|| |++++++...
T Consensus 287 ~D~~~~~~~~~~fD~Ii~npp~~~~~~~---~~~~~~~~l~~~~~~LkpG-G~l~iv~n~~ 343 (381)
T 3dmg_A 287 SDVDEALTEEARFDIIVTNPPFHVGGAV---ILDVAQAFVNVAAARLRPG-GVFFLVSNPF 343 (381)
T ss_dssp CSTTTTSCTTCCEEEEEECCCCCTTCSS---CCHHHHHHHHHHHHHEEEE-EEEEEEECTT
T ss_pred cchhhccccCCCeEEEEECCchhhcccc---cHHHHHHHHHHHHHhcCcC-cEEEEEEcCC
Confidence 9999886655799999999999642211 1234667888999999999 9999987754
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-13 Score=135.11 Aligned_cols=101 Identities=13% Similarity=0.087 Sum_probs=85.4
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEE
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGI 388 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~I 388 (494)
.++|.+|||+|||+|.+++.+|... .+.|+|+|+||.+++.+++|++.+++ .+++.++++|+++++. .+.||.|
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~v----~~~v~~~~~D~~~~~~-~~~~D~V 196 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKV----EDRMSAYNMDNRDFPG-ENIADRI 196 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTC----TTTEEEECSCTTTCCC-CSCEEEE
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEeCcHHHhcc-ccCCCEE
Confidence 3589999999999999999999873 36899999999999999999999876 5678999999998854 3689999
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
|+|||+... .|+..+.++|++| |.+.+
T Consensus 197 i~~~p~~~~------------~~l~~a~~~lk~g-G~ih~ 223 (278)
T 3k6r_A 197 LMGYVVRTH------------EFIPKALSIAKDG-AIIHY 223 (278)
T ss_dssp EECCCSSGG------------GGHHHHHHHEEEE-EEEEE
T ss_pred EECCCCcHH------------HHHHHHHHHcCCC-CEEEE
Confidence 999997531 3455678899998 87755
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-13 Score=124.39 Aligned_cols=121 Identities=18% Similarity=0.146 Sum_probs=98.1
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
.++.+.+.++....+.++.+|||+|||+|.+++.++..+++..++|+|+++.+++.|++|+..+++ ..++ ++++|
T Consensus 9 t~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~-~~~~d 83 (178)
T 3hm2_A 9 TKQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGV----SDRI-AVQQG 83 (178)
T ss_dssp HHHHHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTC----TTSE-EEECC
T ss_pred cHHHHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCC----CCCE-EEecc
Confidence 456677788888888899999999999999999999888888999999999999999999997764 3356 77788
Q ss_pred ccc-ccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 375 VRQ-LCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 375 a~~-l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
+.+ ++...++||+|+++.++.. ..+++++.++|+|| |++++.+...
T Consensus 84 ~~~~~~~~~~~~D~i~~~~~~~~------------~~~l~~~~~~L~~g-G~l~~~~~~~ 130 (178)
T 3hm2_A 84 APRAFDDVPDNPDVIFIGGGLTA------------PGVFAAAWKRLPVG-GRLVANAVTV 130 (178)
T ss_dssp TTGGGGGCCSCCSEEEECC-TTC------------TTHHHHHHHTCCTT-CEEEEEECSH
T ss_pred hHhhhhccCCCCCEEEECCcccH------------HHHHHHHHHhcCCC-CEEEEEeecc
Confidence 754 2332268999999987643 25666899999999 9999877654
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=131.87 Aligned_cols=119 Identities=16% Similarity=0.253 Sum_probs=95.1
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc--CCCCCeeE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC--FKPACVDG 387 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~--~~~~~~D~ 387 (494)
.++..|||+|||+|.+++.+|..+|+..++|+|+++.+++.|++|+..+++ .++.++++|+..++ ++++++|.
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~-----~nv~~~~~d~~~l~~~~~~~~~d~ 111 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-----QNVKLLNIDADTLTDVFEPGEVKR 111 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-----SSEEEECCCGGGHHHHCCTTSCCE
T ss_pred CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC-----CCEEEEeCCHHHHHhhcCcCCcCE
Confidence 357799999999999999999988889999999999999999999998764 34789999998875 56678999
Q ss_pred EEEcCC--CccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHH
Q psy19 388 IVTDLP--FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHL 436 (494)
Q Consensus 388 IVtNPP--YG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l 436 (494)
|+++.| |....... ....+..+++++.++|+|| |.+++.+......
T Consensus 112 v~~~~~~p~~~~~~~~--~rl~~~~~l~~~~~~Lkpg-G~l~~~td~~~~~ 159 (213)
T 2fca_A 112 VYLNFSDPWPKKRHEK--RRLTYSHFLKKYEEVMGKG-GSIHFKTDNRGLF 159 (213)
T ss_dssp EEEESCCCCCSGGGGG--GSTTSHHHHHHHHHHHTTS-CEEEEEESCHHHH
T ss_pred EEEECCCCCcCccccc--cccCcHHHHHHHHHHcCCC-CEEEEEeCCHHHH
Confidence 998854 43321111 1112567888999999999 9999998776543
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.51 E-value=4.1e-13 Score=130.39 Aligned_cols=144 Identities=10% Similarity=0.040 Sum_probs=99.0
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc---cCC---CCC
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL---CFK---PAC 384 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l---~~~---~~~ 384 (494)
++.+|||+|||+|.+++.++...++..++|+|+++.|++.|++|+..+++ ..++.++++|+.+. +++ +++
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~~~ 140 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL----SDLIKVVKVPQKTLLMDALKEESEII 140 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEECCTTCSSTTTSTTCCSCC
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCC----CccEEEEEcchhhhhhhhhhcccCCc
Confidence 56799999999999999988776678999999999999999999998764 34578999997652 343 258
Q ss_pred eeEEEEcCCCcccc---CC-----------c----c---------chHHHHHHHHHHHhhcccCCCcEEEEEecCH---H
Q psy19 385 VDGIVTDLPFGKRV---GS-----------K----S---------NNFLLYRLFLIEIGKIVRPQIGRAILLTSDR---K 434 (494)
Q Consensus 385 ~D~IVtNPPYG~r~---~~-----------~----~---------~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~---~ 434 (494)
||+|++||||.... .. . . ....++..++....++|+++ |.+....... .
T Consensus 141 fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~ 219 (254)
T 2h00_A 141 YDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRL-RWYSCMLGKKCSLA 219 (254)
T ss_dssp BSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGB-SCEEEEESSTTSHH
T ss_pred ccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccce-EEEEECCCChhHHH
Confidence 99999999996421 00 0 0 11234555666666777777 7655544321 3
Q ss_pred HHHHHHHhccccceeeeeEEEccCCce
Q psy19 435 HLIQALHITSALWKCRKQIKINMSGMK 461 (494)
Q Consensus 435 ~l~~~l~~~~~l~~~~~~~~v~~Ggl~ 461 (494)
.+.+.+.+.| +.......+..|...
T Consensus 220 ~~~~~l~~~G--f~~v~~~~~~~g~~~ 244 (254)
T 2h00_A 220 PLKEELRIQG--VPKVTYTEFCQGRTM 244 (254)
T ss_dssp HHHHHHHHTT--CSEEEEEEEEETTEE
T ss_pred HHHHHHHHcC--CCceEEEEEecCCce
Confidence 4556666666 455555555555443
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.2e-14 Score=152.94 Aligned_cols=168 Identities=20% Similarity=0.249 Sum_probs=114.6
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcC-------------CCCeEEEEeCCHHHHHHHHHHHHhccCC
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY-------------PHTFFVCGDINEKLVLKTQANVLHNSGN 361 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~-------------~~~~v~G~Did~~al~~Ar~Nl~~~g~~ 361 (494)
.+..++..|+.++.+.++.+|+||+||||+|+++|+... ....++|.|+++.++.+|+.|+...|..
T Consensus 201 TP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~ 280 (530)
T 3ufb_A 201 TPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE 280 (530)
T ss_dssp CCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS
T ss_pred CcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc
Confidence 345677888889999999999999999999999987531 1246999999999999999999988762
Q ss_pred CCcccceeeeeeccccccCC----CCCeeEEEEcCCCccccCCc--------cchHHHHHHHHHHHhhccc-------CC
Q psy19 362 LNRELKVSPLVCNVRQLCFK----PACVDGIVTDLPFGKRVGSK--------SNNFLLYRLFLIEIGKIVR-------PQ 422 (494)
Q Consensus 362 ~~~~~~i~~~~~Da~~l~~~----~~~~D~IVtNPPYG~r~~~~--------~~~~~ly~~fL~~l~rvLk-------pg 422 (494)
..++.++|....+.. ...||+||+|||||...... ......+-.|+..+.+.|+ +|
T Consensus 281 -----~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~g 355 (530)
T 3ufb_A 281 -----YPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNG 355 (530)
T ss_dssp -----CCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSC
T ss_pred -----cccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCC
Confidence 225777887665422 24799999999998543110 0001123356777777776 67
Q ss_pred CcEEEEEecCHHH--------HHHHHHhccccceeeeeEEE-----cc-CCceEEEEEEeeCC
Q psy19 423 IGRAILLTSDRKH--------LIQALHITSALWKCRKQIKI-----NM-SGMKSFVFILNRTA 471 (494)
Q Consensus 423 ~G~lvllt~~~~~--------l~~~l~~~~~l~~~~~~~~v-----~~-Ggl~~~i~v~~~~~ 471 (494)
|++++|+|+..+ +++.+-+.. .....+.+ +. -|..+.|+++++..
T Consensus 356 -Gr~avVlP~g~Lf~~~~~~~iRk~Lle~~---~l~aII~LP~~~F~~~tgi~t~Il~~~K~~ 414 (530)
T 3ufb_A 356 -GRAAVVVPNGTLFSDGISARIKEELLKNF---NLHTIVRLPEGVFAPYTDIAGNLLFFDRSG 414 (530)
T ss_dssp -CEEEEEEEHHHHHCCTHHHHHHHHHHHHS---EEEEEEECCTTTTTTTCCCCEEEEEEESSS
T ss_pred -ceEEEEecchhhhccchHHHHHHHHhhcC---EEEEEEECCcccCcCCCCCcEEEEEEECCC
Confidence 999999986432 222232221 12222221 23 47888899998754
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=8e-14 Score=133.72 Aligned_cols=122 Identities=13% Similarity=0.025 Sum_probs=97.2
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc-c--CCCCCeeE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-C--FKPACVDG 387 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-~--~~~~~~D~ 387 (494)
++.+|||+|||+|.+++.+|...|+..++|+|+++.+++.|++|+..+++ .++.++++|+.++ + ++++++|.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l-----~nv~~~~~Da~~~l~~~~~~~~~d~ 108 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGL-----SNLRVMCHDAVEVLHKMIPDNSLRM 108 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTC-----SSEEEECSCHHHHHHHHSCTTCEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCC-----CcEEEEECCHHHHHHHHcCCCChhe
Confidence 56799999999999999999998889999999999999999999998764 2478999999885 3 56789999
Q ss_pred EEEc--CCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHH
Q psy19 388 IVTD--LPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQAL 440 (494)
Q Consensus 388 IVtN--PPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l 440 (494)
|+++ +||........ ..+...+++++.++|||| |.+++.|....+....+
T Consensus 109 v~~~~~~p~~~~~~~~r--r~~~~~~l~~~~r~LkpG-G~l~i~td~~~~~~~~~ 160 (218)
T 3dxy_A 109 VQLFFPDPWHKARHNKR--RIVQVPFAELVKSKLQLG-GVFHMATDWEPYAEHML 160 (218)
T ss_dssp EEEESCCCCCSGGGGGG--SSCSHHHHHHHHHHEEEE-EEEEEEESCHHHHHHHH
T ss_pred EEEeCCCCccchhhhhh--hhhhHHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHH
Confidence 9999 77754321110 112346788999999999 99999998776544433
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.9e-13 Score=124.76 Aligned_cols=159 Identities=14% Similarity=0.070 Sum_probs=115.4
Q ss_pred HHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc
Q psy19 300 AYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378 (494)
Q Consensus 300 Aa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l 378 (494)
+..++......++.+|||+|||+|.++..++... +...++|+|+++.+++.|++++...++ .++.+.++|+..+
T Consensus 26 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~d~~~~ 100 (219)
T 3dh0_A 26 PEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL-----KNVEVLKSEENKI 100 (219)
T ss_dssp HHHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC-----TTEEEEECBTTBC
T ss_pred HHHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEecccccC
Confidence 3556667778889999999999999999998875 567999999999999999999987764 2578999999998
Q ss_pred cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC---------------HHHHHHHHHhc
Q psy19 379 CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD---------------RKHLIQALHIT 443 (494)
Q Consensus 379 ~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~---------------~~~l~~~l~~~ 443 (494)
++++++||+|+++..+..- .+ ...+++++.++|+|| |.+++.... ...+...+...
T Consensus 101 ~~~~~~fD~v~~~~~l~~~----~~----~~~~l~~~~~~Lkpg-G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 171 (219)
T 3dh0_A 101 PLPDNTVDFIFMAFTFHEL----SE----PLKFLEELKRVAKPF-AYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDA 171 (219)
T ss_dssp SSCSSCEEEEEEESCGGGC----SS----HHHHHHHHHHHEEEE-EEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHT
T ss_pred CCCCCCeeEEEeehhhhhc----CC----HHHHHHHHHHHhCCC-eEEEEEEecccccccCCchhcccCHHHHHHHHHHC
Confidence 8777899999998765422 12 346777899999999 999887532 34577778777
Q ss_pred cccceeeeeEEEccCCceEEEEEEeeCCCCCCCc
Q psy19 444 SALWKCRKQIKINMSGMKSFVFILNRTADLFDYA 477 (494)
Q Consensus 444 ~~l~~~~~~~~v~~Ggl~~~i~v~~~~~~~~d~~ 477 (494)
| +.......+. +. .++++..+.......|
T Consensus 172 G--f~~~~~~~~~--~~-~~~~~~~k~~~~~~~~ 200 (219)
T 3dh0_A 172 G--IRVGRVVEVG--KY-CFGVYAMIVKQEEENP 200 (219)
T ss_dssp T--CEEEEEEEET--TT-EEEEEEECC-------
T ss_pred C--CEEEEEEeeC--Cc-eEEEEEEeccccccCc
Confidence 7 4555544332 22 3455555544444433
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.50 E-value=8.7e-13 Score=127.43 Aligned_cols=143 Identities=9% Similarity=0.041 Sum_probs=105.0
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC---CCCee
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK---PACVD 386 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~---~~~~D 386 (494)
.++.+|||+|||+|.+++.+|...++..++|+|+++.+++.|++|+..+++ . ++.++++|+.++++. +++||
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----~-~v~~~~~d~~~~~~~~~~~~~fD 143 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL----E-NTTFCHDRAETFGQRKDVRESYD 143 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC----S-SEEEEESCHHHHTTCTTTTTCEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC----C-CEEEEeccHHHhcccccccCCcc
Confidence 467899999999999999998777788999999999999999999998764 2 378999999888653 46899
Q ss_pred EEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH--H---HHHHHHHhccccceeeeeEE--EccCC
Q psy19 387 GIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR--K---HLIQALHITSALWKCRKQIK--INMSG 459 (494)
Q Consensus 387 ~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~--~---~l~~~l~~~~~l~~~~~~~~--v~~Gg 459 (494)
+|+++.. .+ +..+++.+.++|+|| |++++..+.. . .+.+.+...+ +....... +..+.
T Consensus 144 ~V~~~~~--------~~----~~~~l~~~~~~Lkpg-G~l~~~~g~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~~~~~ 208 (240)
T 1xdz_A 144 IVTARAV--------AR----LSVLSELCLPLVKKN-GLFVALKAASAEEELNAGKKAITTLG--GELENIHSFKLPIEE 208 (240)
T ss_dssp EEEEECC--------SC----HHHHHHHHGGGEEEE-EEEEEEECC-CHHHHHHHHHHHHHTT--EEEEEEEEEECTTTC
T ss_pred EEEEecc--------CC----HHHHHHHHHHhcCCC-CEEEEEeCCCchHHHHHHHHHHHHcC--CeEeEEEEEecCCCC
Confidence 9999651 12 457777899999999 9998876432 2 2334455555 34433333 33334
Q ss_pred ceEEEEEEeeCCC
Q psy19 460 MKSFVFILNRTAD 472 (494)
Q Consensus 460 l~~~i~v~~~~~~ 472 (494)
-..+++++++...
T Consensus 209 ~~~~l~~~~k~~~ 221 (240)
T 1xdz_A 209 SDRNIMVIRKIKN 221 (240)
T ss_dssp CEEEEEEEEECSC
T ss_pred CceEEEEEEecCC
Confidence 5567777766443
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.49 E-value=5e-13 Score=126.54 Aligned_cols=123 Identities=11% Similarity=0.044 Sum_probs=99.4
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
..+.+.+.++....+.++.+|||+|||+|.+++++|.. +..|+|+|+++.+++.|++|++.+++ .+++.++++|
T Consensus 39 ~~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~----~~~v~~~~~d 112 (204)
T 3njr_A 39 TKSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGL----SPRMRAVQGT 112 (204)
T ss_dssp CCHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEESC
T ss_pred CcHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCC----CCCEEEEeCc
Confidence 44566667778888889999999999999999999987 78999999999999999999998765 3357899999
Q ss_pred cccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHH
Q psy19 375 VRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLI 437 (494)
Q Consensus 375 a~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~ 437 (494)
+.+.......||+|++++.. + .. +++++.++|+|| |++++.+.....+.
T Consensus 113 ~~~~~~~~~~~D~v~~~~~~--------~----~~-~l~~~~~~Lkpg-G~lv~~~~~~~~~~ 161 (204)
T 3njr_A 113 APAALADLPLPEAVFIGGGG--------S----QA-LYDRLWEWLAPG-TRIVANAVTLESET 161 (204)
T ss_dssp TTGGGTTSCCCSEEEECSCC--------C----HH-HHHHHHHHSCTT-CEEEEEECSHHHHH
T ss_pred hhhhcccCCCCCEEEECCcc--------c----HH-HHHHHHHhcCCC-cEEEEEecCcccHH
Confidence 98842223579999998732 1 23 667899999999 99999887654443
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.9e-13 Score=128.33 Aligned_cols=128 Identities=16% Similarity=0.142 Sum_probs=106.4
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhc-cCCCCccccee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHN-SGNLNRELKVS 369 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~-g~~~~~~~~i~ 369 (494)
..++.+..++.++..+.+.++.+|||+|||+|.+++.++.. .|+..++|+|+++.+++.|++|+..+ |. .++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~-----~~v~ 151 (258)
T 2pwy_A 77 ATPTYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV-----ENVR 151 (258)
T ss_dssp SCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCC-----CCEE
T ss_pred cccccchHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC-----CCEE
Confidence 45567777788888889999999999999999999999887 66789999999999999999999876 52 3578
Q ss_pred eeeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHH
Q psy19 370 PLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQ 438 (494)
Q Consensus 370 ~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~ 438 (494)
+.++|+.+.++++++||+|++|+|.- ..+++++.++|+|| |+++++++....+.+
T Consensus 152 ~~~~d~~~~~~~~~~~D~v~~~~~~~-------------~~~l~~~~~~L~~g-G~l~~~~~~~~~~~~ 206 (258)
T 2pwy_A 152 FHLGKLEEAELEEAAYDGVALDLMEP-------------WKVLEKAALALKPD-RFLVAYLPNITQVLE 206 (258)
T ss_dssp EEESCGGGCCCCTTCEEEEEEESSCG-------------GGGHHHHHHHEEEE-EEEEEEESCHHHHHH
T ss_pred EEECchhhcCCCCCCcCEEEECCcCH-------------HHHHHHHHHhCCCC-CEEEEEeCCHHHHHH
Confidence 99999998867667899999998721 14556789999999 999999997644443
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.3e-13 Score=141.79 Aligned_cols=118 Identities=15% Similarity=0.046 Sum_probs=92.0
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC----CCCCe
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF----KPACV 385 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~----~~~~~ 385 (494)
.++.+|||+|||+|++++.+|... ...|+|+|+++.+++.|++|+..+++. ..++.++++|+.++.. ....|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~---~~~v~~~~~D~~~~~~~~~~~~~~f 294 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLD---LSKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCC---GGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCC---ccceEEEECCHHHHHHHHHhcCCCC
Confidence 477899999999999999999863 358999999999999999999987640 2357899999987621 13589
Q ss_pred eEEEEcCCCccccC-CccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 386 DGIVTDLPFGKRVG-SKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 386 D~IVtNPPYG~r~~-~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
|+||+||||..... ........|..++..+.++|+|| |.+++.++.
T Consensus 295 D~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~ 341 (396)
T 3c0k_A 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEG-GILLTFSCS 341 (396)
T ss_dssp EEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEE-EEEEEEECC
T ss_pred CEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCC-cEEEEEeCC
Confidence 99999999853321 11122244778888999999999 998887764
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.7e-13 Score=134.27 Aligned_cols=107 Identities=13% Similarity=0.103 Sum_probs=89.2
Q ss_pred HhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCe
Q psy19 306 LASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACV 385 (494)
Q Consensus 306 la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~ 385 (494)
+....++.+|||+|||+|++++.+|...+...|+|+|+++.+++.|++|++.+++ .++.++++|+.+++. .+.|
T Consensus 114 ~~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l-----~~~~~~~~d~~~~~~-~~~~ 187 (272)
T 3a27_A 114 AFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKL-----NNVIPILADNRDVEL-KDVA 187 (272)
T ss_dssp HTSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTC-----SSEEEEESCGGGCCC-TTCE
T ss_pred HHhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCEEEEECChHHcCc-cCCc
Confidence 4556788999999999999999999986667999999999999999999998875 236799999998733 4689
Q ss_pred eEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 386 DGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 386 D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
|+|++|||++ +..++..+.+.|+|| |.+++.+.
T Consensus 188 D~Vi~d~p~~------------~~~~l~~~~~~Lkpg-G~l~~s~~ 220 (272)
T 3a27_A 188 DRVIMGYVHK------------THKFLDKTFEFLKDR-GVIHYHET 220 (272)
T ss_dssp EEEEECCCSS------------GGGGHHHHHHHEEEE-EEEEEEEE
T ss_pred eEEEECCccc------------HHHHHHHHHHHcCCC-CEEEEEEc
Confidence 9999999972 224556788899999 98887544
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-12 Score=120.14 Aligned_cols=143 Identities=15% Similarity=0.115 Sum_probs=97.6
Q ss_pred cccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCccccee
Q psy19 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVS 369 (494)
Q Consensus 290 ~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~ 369 (494)
+.|.+..+.++.. +.... .++.+|||+|||+|.+++.++.. + .++|+|+++.|++. . .++.
T Consensus 4 ~~P~~~~~~l~~~-l~~~~-~~~~~vLD~GcG~G~~~~~l~~~--~-~v~gvD~s~~~~~~------~--------~~~~ 64 (170)
T 3q87_B 4 YEPGEDTYTLMDA-LEREG-LEMKIVLDLGTSTGVITEQLRKR--N-TVVSTDLNIRALES------H--------RGGN 64 (170)
T ss_dssp CCCCHHHHHHHHH-HHHHT-CCSCEEEEETCTTCHHHHHHTTT--S-EEEEEESCHHHHHT------C--------SSSC
T ss_pred cCcCccHHHHHHH-HHhhc-CCCCeEEEeccCccHHHHHHHhc--C-cEEEEECCHHHHhc------c--------cCCe
Confidence 3466666666666 33322 35679999999999999999887 3 99999999999987 1 1357
Q ss_pred eeeeccccccCCCCCeeEEEEcCCCccccCC-----ccchHHHHHHHHHHHhhcccCCCcEEEEEecC---HHHHHHHHH
Q psy19 370 PLVCNVRQLCFKPACVDGIVTDLPFGKRVGS-----KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD---RKHLIQALH 441 (494)
Q Consensus 370 ~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~-----~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~---~~~l~~~l~ 441 (494)
++++|+.+ ++++++||+|++||||...... ..+...++. ++.+.| || |+++++.+. ...+.+.+.
T Consensus 65 ~~~~d~~~-~~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l-pg-G~l~~~~~~~~~~~~l~~~l~ 137 (170)
T 3q87_B 65 LVRADLLC-SINQESVDVVVFNPPYVPDTDDPIIGGGYLGREVID----RFVDAV-TV-GMLYLLVIEANRPKEVLARLE 137 (170)
T ss_dssp EEECSTTT-TBCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHH----HHHHHC-CS-SEEEEEEEGGGCHHHHHHHHH
T ss_pred EEECChhh-hcccCCCCEEEECCCCccCCccccccCCcchHHHHH----HHHhhC-CC-CEEEEEEecCCCHHHHHHHHH
Confidence 89999987 4555799999999999742211 112233444 466666 98 999987653 344666677
Q ss_pred hccccceeeeeEEEccCCc
Q psy19 442 ITSALWKCRKQIKINMSGM 460 (494)
Q Consensus 442 ~~~~l~~~~~~~~v~~Ggl 460 (494)
+.| |..........|--
T Consensus 138 ~~g--f~~~~~~~~~~~~e 154 (170)
T 3q87_B 138 ERG--YGTRILKVRKILGE 154 (170)
T ss_dssp HTT--CEEEEEEEEECSSS
T ss_pred HCC--CcEEEEEeeccCCc
Confidence 666 45555444444433
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.48 E-value=6.4e-14 Score=126.63 Aligned_cols=125 Identities=15% Similarity=0.101 Sum_probs=92.7
Q ss_pred ccchHHHHHHHHHHhCC--CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 293 TTLKPTIAYNMVRLASP--IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~--~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
.|..+.+...++..... .++.+|||+|||+|.+++.++... ..++|+|+++.+++.|++|+..+++ ++.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~------~~~~ 92 (171)
T 1ws6_A 21 RPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVRRTGL------GARV 92 (171)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHHHHTC------CCEE
T ss_pred CCCHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHHcCC------ceEE
Confidence 44556666666665543 267899999999999999999874 4599999999999999999997753 4678
Q ss_pred eeeccccc-c-CC--CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHH
Q psy19 371 LVCNVRQL-C-FK--PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRK 434 (494)
Q Consensus 371 ~~~Da~~l-~-~~--~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~ 434 (494)
.++|+.+. + .. .++||+|++||||. . . ...++..+.+ .++|+|| |.+++.++...
T Consensus 93 ~~~d~~~~~~~~~~~~~~~D~i~~~~~~~-~--~---~~~~~~~~~~--~~~L~~g-G~~~~~~~~~~ 151 (171)
T 1ws6_A 93 VALPVEVFLPEAKAQGERFTVAFMAPPYA-M--D---LAALFGELLA--SGLVEAG-GLYVLQHPKDL 151 (171)
T ss_dssp ECSCHHHHHHHHHHTTCCEEEEEECCCTT-S--C---TTHHHHHHHH--HTCEEEE-EEEEEEEETTS
T ss_pred EeccHHHHHHhhhccCCceEEEEECCCCc-h--h---HHHHHHHHHh--hcccCCC-cEEEEEeCCcc
Confidence 99998874 2 11 24799999999997 2 1 1222332222 4999999 99988877654
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=6e-13 Score=124.49 Aligned_cols=152 Identities=20% Similarity=0.237 Sum_probs=109.9
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
.++.+|||+|||+|.+++.++...+ ..++|+|+++.+++.|++++.. ...+.+.++|+.++++++++||+|+
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~~~~a~~~~~~-------~~~i~~~~~d~~~~~~~~~~fD~v~ 112 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGF-PNVTSVDYSSVVVAAMQACYAH-------VPQLRWETMDVRKLDFPSASFDVVL 112 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTC-CCEEEEESCHHHHHHHHHHTTT-------CTTCEEEECCTTSCCSCSSCEEEEE
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCC-CcEEEEeCCHHHHHHHHHhccc-------CCCcEEEEcchhcCCCCCCcccEEE
Confidence 5778999999999999999988743 2899999999999999999863 1246889999998887778999999
Q ss_pred EcCCCccccCCc-------cchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHH-HHhccccceeeeeEEEccCCce
Q psy19 390 TDLPFGKRVGSK-------SNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQA-LHITSALWKCRKQIKINMSGMK 461 (494)
Q Consensus 390 tNPPYG~r~~~~-------~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~-l~~~~~l~~~~~~~~v~~Ggl~ 461 (494)
+++|+..-.... .........+++++.++|+|| |+++++++....+... +...+..|.. .......+..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~li~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 189 (215)
T 2pxx_A 113 EKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPG-GRFISMTSAAPHFRTRHYAQAYYGWSL--RHATYGSGFH 189 (215)
T ss_dssp EESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEE-EEEEEEESCCHHHHHHHHCCGGGCEEE--EEEEESGGGC
T ss_pred ECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCC-CEEEEEeCCCcHHHHHHHhccccCcEE--EEEEecCcce
Confidence 999875332110 012334567888999999999 9999998876444433 3333322332 2222345666
Q ss_pred EEEEEEeeCCC
Q psy19 462 SFVFILNRTAD 472 (494)
Q Consensus 462 ~~i~v~~~~~~ 472 (494)
.++|+.++...
T Consensus 190 ~~~~~~~~~~~ 200 (215)
T 2pxx_A 190 FHLYLMHKGGK 200 (215)
T ss_dssp EEEEEEEETCC
T ss_pred EEEEEEEeCCC
Confidence 77888877543
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.1e-13 Score=126.65 Aligned_cols=123 Identities=15% Similarity=0.144 Sum_probs=103.2
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
.++.+.++..++......++ +|||+|||+|.++..++.. ++..++|+|+++.+++.|+.++...++ ..++.+.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~----~~~~~~~~ 99 (219)
T 3dlc_A 26 APIYPIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANL----NDRIQIVQ 99 (219)
T ss_dssp TTHHHHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEE
T ss_pred ccccHHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccc----cCceEEEE
Confidence 45677888888888887777 9999999999999999887 678999999999999999999998764 34678999
Q ss_pred eccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 373 CNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 373 ~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+|+.++++++++||+|+++..+..- .+ ...+++++.++|+|| |++++..
T Consensus 100 ~d~~~~~~~~~~~D~v~~~~~l~~~----~~----~~~~l~~~~~~L~pg-G~l~~~~ 148 (219)
T 3dlc_A 100 GDVHNIPIEDNYADLIVSRGSVFFW----ED----VATAFREIYRILKSG-GKTYIGG 148 (219)
T ss_dssp CBTTBCSSCTTCEEEEEEESCGGGC----SC----HHHHHHHHHHHEEEE-EEEEEEE
T ss_pred cCHHHCCCCcccccEEEECchHhhc----cC----HHHHHHHHHHhCCCC-CEEEEEe
Confidence 9999998877899999999875432 12 345777899999999 9988863
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.48 E-value=4.3e-13 Score=129.63 Aligned_cols=125 Identities=10% Similarity=0.002 Sum_probs=103.1
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
..|..+..+..++..+...++.+|||+|||+|.+++.++... +..++|+|+++.+++.|++++...|+ ..++.+.
T Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~v~~~ 91 (256)
T 1nkv_A 17 HNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGV----SERVHFI 91 (256)
T ss_dssp SSSCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEE
T ss_pred cCCCCHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCC----CcceEEE
Confidence 556778888889999888899999999999999999988765 57899999999999999999997764 3467899
Q ss_pred eeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 372 VCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 372 ~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
++|+.++++ +++||+|++...... .. + ...+++++.++|||| |++++..+
T Consensus 92 ~~d~~~~~~-~~~fD~V~~~~~~~~-~~---~----~~~~l~~~~r~Lkpg-G~l~~~~~ 141 (256)
T 1nkv_A 92 HNDAAGYVA-NEKCDVAACVGATWI-AG---G----FAGAEELLAQSLKPG-GIMLIGEP 141 (256)
T ss_dssp ESCCTTCCC-SSCEEEEEEESCGGG-TS---S----SHHHHHHHTTSEEEE-EEEEEEEE
T ss_pred ECChHhCCc-CCCCCEEEECCChHh-cC---C----HHHHHHHHHHHcCCC-eEEEEecC
Confidence 999999877 679999999654321 11 2 246777899999999 99988653
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.48 E-value=4.8e-13 Score=132.01 Aligned_cols=123 Identities=14% Similarity=0.119 Sum_probs=103.1
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
..+.+..++.++..+.+.++.+|||+|||+|.+++.++.. .|+..++|+|+++.+++.|++|+..+++ ..++.+.
T Consensus 94 ~~~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----~~~v~~~ 169 (277)
T 1o54_A 94 QIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL----IERVTIK 169 (277)
T ss_dssp CCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC----GGGEEEE
T ss_pred CccCHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC----CCCEEEE
Confidence 4466677778888889999999999999999999999987 6678999999999999999999997754 3467899
Q ss_pred eeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHH
Q psy19 372 VCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRK 434 (494)
Q Consensus 372 ~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~ 434 (494)
++|+.+. +++++||+|++|||+.. .+++.+.++|+|| |++++.++...
T Consensus 170 ~~d~~~~-~~~~~~D~V~~~~~~~~-------------~~l~~~~~~L~pg-G~l~~~~~~~~ 217 (277)
T 1o54_A 170 VRDISEG-FDEKDVDALFLDVPDPW-------------NYIDKCWEALKGG-GRFATVCPTTN 217 (277)
T ss_dssp CCCGGGC-CSCCSEEEEEECCSCGG-------------GTHHHHHHHEEEE-EEEEEEESSHH
T ss_pred ECCHHHc-ccCCccCEEEECCcCHH-------------HHHHHHHHHcCCC-CEEEEEeCCHH
Confidence 9999886 55568999999998531 3455788899999 99999998653
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.5e-13 Score=130.92 Aligned_cols=124 Identities=14% Similarity=0.092 Sum_probs=101.6
Q ss_pred ccchHHHHHHHHHHhC-CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 293 TTLKPTIAYNMVRLAS-PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 293 a~L~e~lAa~ll~la~-~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
.|..+.....++.+.. ..++.+|||+|||+|.+++.++.. +.+.++|+|+++.+++.|++++...++ ..++.+.
T Consensus 27 ~~~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~ 101 (267)
T 3kkz_A 27 GPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGL----QNRVTGI 101 (267)
T ss_dssp SSCCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEE
T ss_pred CCCCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCC----CcCcEEE
Confidence 3445555666666554 678899999999999999999887 567999999999999999999998764 4568999
Q ss_pred eeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 372 VCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 372 ~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
++|+.++++++++||+|+++.++..- + ...+++++.++|+|| |++++.++
T Consensus 102 ~~d~~~~~~~~~~fD~i~~~~~~~~~-----~----~~~~l~~~~~~Lkpg-G~l~~~~~ 151 (267)
T 3kkz_A 102 VGSMDDLPFRNEELDLIWSEGAIYNI-----G----FERGLNEWRKYLKKG-GYLAVSEC 151 (267)
T ss_dssp ECCTTSCCCCTTCEEEEEESSCGGGT-----C----HHHHHHHHGGGEEEE-EEEEEEEE
T ss_pred EcChhhCCCCCCCEEEEEEcCCceec-----C----HHHHHHHHHHHcCCC-CEEEEEEe
Confidence 99999988777899999999876432 1 356778999999999 99988754
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.47 E-value=7e-14 Score=138.45 Aligned_cols=123 Identities=14% Similarity=0.111 Sum_probs=96.3
Q ss_pred HHHhCCCCCCEEEEEcCCcChHHHHHHhcCCC-CeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC--
Q psy19 304 VRLASPIPGDVFLDPMCGGGTIPVECSLSYPH-TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF-- 380 (494)
Q Consensus 304 l~la~~~~g~~VLDP~CGSGtilIEAA~~~~~-~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~-- 380 (494)
..+..+.++.+|||+|||+|++++.+|...++ ..|+|+|+++.+++.+++|++.+|+ .++.++++|+..++.
T Consensus 76 ~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~-----~~v~~~~~D~~~~~~~~ 150 (274)
T 3ajd_A 76 PIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV-----LNTIIINADMRKYKDYL 150 (274)
T ss_dssp HHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEESCHHHHHHHH
T ss_pred HHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC-----CcEEEEeCChHhcchhh
Confidence 34557788999999999999999998876555 7999999999999999999998775 257899999988753
Q ss_pred --CCCCeeEEEEcCCCccc-c-C--------CccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 381 --KPACVDGIVTDLPFGKR-V-G--------SKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 381 --~~~~~D~IVtNPPYG~r-~-~--------~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
..+.||+|++||||... . . ....+...+..+++.+.++|||| |++++.|+.
T Consensus 151 ~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~stcs 213 (274)
T 3ajd_A 151 LKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKD-GELVYSTCS 213 (274)
T ss_dssp HHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEE-EEEEEEESC
T ss_pred hhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCC-CEEEEEECC
Confidence 24689999999998421 0 0 00112234678889999999999 999998763
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.8e-13 Score=120.77 Aligned_cols=129 Identities=14% Similarity=0.076 Sum_probs=103.7
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
.+..+.++..++......++.+|||+|||+|.+++.++. ++..++|+|+++.+++.|++|+..+++ .++.+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~ 89 (183)
T 2yxd_A 17 PITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNI-----KNCQIIK 89 (183)
T ss_dssp CCCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTC-----CSEEEEE
T ss_pred CcCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCC-----CcEEEEE
Confidence 367788888888888888889999999999999999887 578999999999999999999998764 3478999
Q ss_pred eccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHH---HHHHHhcc
Q psy19 373 CNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHL---IQALHITS 444 (494)
Q Consensus 373 ~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l---~~~l~~~~ 444 (494)
+|+.+ ++++++||+|++++| .+ +..+++.+.++ || |.+++.++....+ .+.+...+
T Consensus 90 ~d~~~-~~~~~~~D~i~~~~~--------~~----~~~~l~~~~~~--~g-G~l~~~~~~~~~~~~~~~~l~~~g 148 (183)
T 2yxd_A 90 GRAED-VLDKLEFNKAFIGGT--------KN----IEKIIEILDKK--KI-NHIVANTIVLENAAKIINEFESRG 148 (183)
T ss_dssp SCHHH-HGGGCCCSEEEECSC--------SC----HHHHHHHHHHT--TC-CEEEEEESCHHHHHHHHHHHHHTT
T ss_pred CCccc-cccCCCCcEEEECCc--------cc----HHHHHHHHhhC--CC-CEEEEEecccccHHHHHHHHHHcC
Confidence 99987 555578999999998 12 34566678777 88 9999988765433 33444444
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-13 Score=137.37 Aligned_cols=125 Identities=16% Similarity=0.098 Sum_probs=98.6
Q ss_pred HHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC
Q psy19 302 NMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380 (494)
Q Consensus 302 ~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~ 380 (494)
.++.+..+.++.+|||+|||+|..++.+|...+ ...|+|+|+++.+++.+++|+..+|+ .++.++++|+..++.
T Consensus 109 l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~-----~~v~~~~~D~~~~~~ 183 (315)
T 1ixk_A 109 YPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV-----LNVILFHSSSLHIGE 183 (315)
T ss_dssp HHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC-----CSEEEESSCGGGGGG
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC-----CeEEEEECChhhccc
Confidence 344556788999999999999999999887653 47999999999999999999998875 247899999998764
Q ss_pred CCCCeeEEEEcCCCcc-c-cCCc------------cchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 381 KPACVDGIVTDLPFGK-R-VGSK------------SNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~-r-~~~~------------~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
..+.||+|++|||+.. . +... ..+..++..++.++.++|||| |++++.|+.
T Consensus 184 ~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpG-G~lv~stcs 248 (315)
T 1ixk_A 184 LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPG-GILVYSTCS 248 (315)
T ss_dssp GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEESC
T ss_pred ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCC-CEEEEEeCC
Confidence 4468999999999621 1 1000 123455678999999999999 999997763
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-12 Score=128.44 Aligned_cols=131 Identities=15% Similarity=0.145 Sum_probs=106.4
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhc-cCCCCccccee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHN-SGNLNRELKVS 369 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~-g~~~~~~~~i~ 369 (494)
...+.+..++.++..+.+.++.+|||+|||+|.+++.++.. .++..++|+|+++.+++.|++|+..+ |. +..++.
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~---~~~~v~ 156 (280)
T 1i9g_A 80 PQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ---PPDNWR 156 (280)
T ss_dssp SCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS---CCTTEE
T ss_pred ceeecHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC---CCCcEE
Confidence 34567777888888889999999999999999999998874 56789999999999999999999876 40 124578
Q ss_pred eeeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHH
Q psy19 370 PLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQA 439 (494)
Q Consensus 370 ~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~ 439 (494)
+.++|+.+.++++++||+|++|+|-. ..+++++.++|+|| |++++.++....+.+.
T Consensus 157 ~~~~d~~~~~~~~~~~D~v~~~~~~~-------------~~~l~~~~~~L~pg-G~l~~~~~~~~~~~~~ 212 (280)
T 1i9g_A 157 LVVSDLADSELPDGSVDRAVLDMLAP-------------WEVLDAVSRLLVAG-GVLMVYVATVTQLSRI 212 (280)
T ss_dssp EECSCGGGCCCCTTCEEEEEEESSCG-------------GGGHHHHHHHEEEE-EEEEEEESSHHHHHHH
T ss_pred EEECchHhcCCCCCceeEEEECCcCH-------------HHHHHHHHHhCCCC-CEEEEEeCCHHHHHHH
Confidence 99999998876667899999998721 14566789999999 9999999876544443
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=7.9e-13 Score=121.06 Aligned_cols=133 Identities=19% Similarity=0.164 Sum_probs=107.1
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
.+..+.++..++......++.+|||+|||+|.+++.++... ..++|+|+++.+++.|++|+..++. ..++.+.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~----~~~~~~~~ 88 (192)
T 1l3i_A 15 GPTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGL----GDNVTLME 88 (192)
T ss_dssp CCCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTC----CTTEEEEE
T ss_pred CCChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCC----CcceEEEe
Confidence 36788889999998888899999999999999999998874 7999999999999999999997754 34578899
Q ss_pred eccccccCCC-CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHH---HHHHHHhcc
Q psy19 373 CNVRQLCFKP-ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKH---LIQALHITS 444 (494)
Q Consensus 373 ~Da~~l~~~~-~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~---l~~~l~~~~ 444 (494)
+|+.+ +++. +.||+|++++|+. + +..+++.+.++|+|| |.+++.++.... +.+.+.+.+
T Consensus 89 ~d~~~-~~~~~~~~D~v~~~~~~~-------~----~~~~l~~~~~~l~~g-G~l~~~~~~~~~~~~~~~~l~~~g 151 (192)
T 1l3i_A 89 GDAPE-ALCKIPDIDIAVVGGSGG-------E----LQEILRIIKDKLKPG-GRIIVTAILLETKFEAMECLRDLG 151 (192)
T ss_dssp SCHHH-HHTTSCCEEEEEESCCTT-------C----HHHHHHHHHHTEEEE-EEEEEEECBHHHHHHHHHHHHHTT
T ss_pred cCHHH-hcccCCCCCEEEECCchH-------H----HHHHHHHHHHhcCCC-cEEEEEecCcchHHHHHHHHHHCC
Confidence 99877 2222 5899999998763 1 356777899999999 999998876533 344455554
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.45 E-value=6.5e-13 Score=131.13 Aligned_cols=126 Identities=13% Similarity=0.120 Sum_probs=93.3
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhc-cCCCCcccceee
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHN-SGNLNRELKVSP 370 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~-g~~~~~~~~i~~ 370 (494)
..+.+..+..++..+.+.++.+|||+|||+|.+++.++.. .++..++|+|+++.+++.|++|+..+ |. .++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-----~~v~~ 166 (275)
T 1yb2_A 92 QIISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-----GNVRT 166 (275)
T ss_dssp --------------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-----TTEEE
T ss_pred cccChhhHHHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-----CcEEE
Confidence 3455555667777888889999999999999999999876 67789999999999999999999876 52 35789
Q ss_pred eeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHH
Q psy19 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQ 438 (494)
Q Consensus 371 ~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~ 438 (494)
.++|+.+ ++++++||+|++|+|-. ..+++++.++|+|| |++++.++......+
T Consensus 167 ~~~d~~~-~~~~~~fD~Vi~~~~~~-------------~~~l~~~~~~Lkpg-G~l~i~~~~~~~~~~ 219 (275)
T 1yb2_A 167 SRSDIAD-FISDQMYDAVIADIPDP-------------WNHVQKIASMMKPG-SVATFYLPNFDQSEK 219 (275)
T ss_dssp ECSCTTT-CCCSCCEEEEEECCSCG-------------GGSHHHHHHTEEEE-EEEEEEESSHHHHHH
T ss_pred EECchhc-cCcCCCccEEEEcCcCH-------------HHHHHHHHHHcCCC-CEEEEEeCCHHHHHH
Confidence 9999987 45557899999998822 14556789999999 999999998643333
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.1e-13 Score=140.82 Aligned_cols=125 Identities=10% Similarity=-0.034 Sum_probs=99.7
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHh-------ccCCCCc
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH-------NSGNLNR 364 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~-------~g~~~~~ 364 (494)
-+++.+.....|+..+.+.++++|||+|||+|.+++.+|...+...++|+|+++.+++.|++|++. +|+.
T Consensus 154 YGEt~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~--- 230 (438)
T 3uwp_A 154 YGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK--- 230 (438)
T ss_dssp GGGTHHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBC---
T ss_pred cCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCC---
Confidence 456778888889999999999999999999999999999876545699999999999999988642 3321
Q ss_pred ccceeeeeeccccccCCC--CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 365 ELKVSPLVCNVRQLCFKP--ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 365 ~~~i~~~~~Da~~l~~~~--~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
..++.++++|+.++++.+ ..+|+|++|++|.. .+ ....|.++.++|||| |+++++
T Consensus 231 ~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~F~-----pd----l~~aL~Ei~RvLKPG-GrIVss 287 (438)
T 3uwp_A 231 HAEYTLERGDFLSEEWRERIANTSVIFVNNFAFG-----PE----VDHQLKERFANMKEG-GRIVSS 287 (438)
T ss_dssp CCEEEEEECCTTSHHHHHHHHTCSEEEECCTTCC-----HH----HHHHHHHHHTTSCTT-CEEEES
T ss_pred CCCeEEEECcccCCccccccCCccEEEEcccccC-----ch----HHHHHHHHHHcCCCC-cEEEEe
Confidence 256899999999987643 37999999998731 12 234455788999999 998764
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-12 Score=135.21 Aligned_cols=121 Identities=14% Similarity=0.035 Sum_probs=94.5
Q ss_pred chHHHHHHHHHHh--CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 295 LKPTIAYNMVRLA--SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 295 L~e~lAa~ll~la--~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
..+.++..++.+. ...++.+|||+| |+|.++++++...+...|+|+|+++.+++.|++|+..+|+ . ++.+++
T Consensus 154 ~~~~~~~~~l~~~~~~~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~----~-~v~~~~ 227 (373)
T 2qm3_A 154 TPETTVARVILMHTRGDLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGY----E-DIEIFT 227 (373)
T ss_dssp CHHHHHHHHHHHHHTTCSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTC----C-CEEEEC
T ss_pred CHHHHHHHHHHHhhcCCCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC----C-CEEEEE
Confidence 4444554444332 234678999999 9999999999887667999999999999999999998875 2 578999
Q ss_pred ecccc-ccC-CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEE-EEEec
Q psy19 373 CNVRQ-LCF-KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRA-ILLTS 431 (494)
Q Consensus 373 ~Da~~-l~~-~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~l-vllt~ 431 (494)
+|+.+ ++. .+++||+|++||||+.. . ...|+.++.++|+|| |++ ++.+.
T Consensus 228 ~D~~~~l~~~~~~~fD~Vi~~~p~~~~-----~----~~~~l~~~~~~Lkpg-G~~~~~~~~ 279 (373)
T 2qm3_A 228 FDLRKPLPDYALHKFDTFITDPPETLE-----A----IRAFVGRGIATLKGP-RCAGYFGIT 279 (373)
T ss_dssp CCTTSCCCTTTSSCBSEEEECCCSSHH-----H----HHHHHHHHHHTBCST-TCEEEEEEC
T ss_pred ChhhhhchhhccCCccEEEECCCCchH-----H----HHHHHHHHHHHcccC-CeEEEEEEe
Confidence 99998 653 34689999999999853 1 367888999999999 954 44443
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=8.4e-13 Score=127.64 Aligned_cols=123 Identities=13% Similarity=0.072 Sum_probs=100.1
Q ss_pred cchHHHHHHHHHHh-CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 294 TLKPTIAYNMVRLA-SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 294 ~L~e~lAa~ll~la-~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
|..+.+...++.+. ...++.+|||+|||+|.+++.++...+ ..++|+|+++.+++.|++|+..+++ ..++.+.+
T Consensus 28 ~~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~----~~~~~~~~ 102 (257)
T 3f4k_A 28 PGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK-GQITGIDLFPDFIEIFNENAVKANC----ADRVKGIT 102 (257)
T ss_dssp SCCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC-SEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHHcCC----CCceEEEE
Confidence 34455555555554 567888999999999999999998875 4999999999999999999998765 45678999
Q ss_pred eccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 373 CNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 373 ~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+|+..+++++++||+|+++..+..- + ...+++++.++|+|| |++++..+
T Consensus 103 ~d~~~~~~~~~~fD~v~~~~~l~~~-----~----~~~~l~~~~~~L~pg-G~l~~~~~ 151 (257)
T 3f4k_A 103 GSMDNLPFQNEELDLIWSEGAIYNI-----G----FERGMNEWSKYLKKG-GFIAVSEA 151 (257)
T ss_dssp CCTTSCSSCTTCEEEEEEESCSCCC-----C----HHHHHHHHHTTEEEE-EEEEEEEE
T ss_pred CChhhCCCCCCCEEEEEecChHhhc-----C----HHHHHHHHHHHcCCC-cEEEEEEe
Confidence 9999988877899999998765422 2 346778999999999 99998763
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.7e-13 Score=138.24 Aligned_cols=124 Identities=16% Similarity=0.221 Sum_probs=95.4
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
..+.+...++.++... +..|||+|||+|++++.+|.. ...|+|+|+++.|++.|++|++.+|+ .++.++++|
T Consensus 198 ~~~~l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng~-----~~v~~~~~d 269 (369)
T 3bt7_A 198 MNIQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANHI-----DNVQIIRMA 269 (369)
T ss_dssp HHHHHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTTC-----CSEEEECCC
T ss_pred HHHHHHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCC-----CceEEEECC
Confidence 4466666677766654 578999999999999988875 46899999999999999999998875 257899999
Q ss_pred ccccc--CCC--------------CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHH
Q psy19 375 VRQLC--FKP--------------ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQ 438 (494)
Q Consensus 375 a~~l~--~~~--------------~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~ 438 (494)
+.++. +.. ..||+||+|||+. +.. . ++.+.|+++ |+++++++++..+.+
T Consensus 270 ~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~---g~~-------~----~~~~~l~~~-g~ivyvsc~p~t~ar 334 (369)
T 3bt7_A 270 AEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS---GLD-------S----ETEKMVQAY-PRILYISCNPETLCK 334 (369)
T ss_dssp SHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTT---CCC-------H----HHHHHHTTS-SEEEEEESCHHHHHH
T ss_pred HHHHHHHHhhccccccccccccccCCCCEEEECcCcc---ccH-------H----HHHHHHhCC-CEEEEEECCHHHHHH
Confidence 87752 221 2799999999975 211 1 345566788 999999999876665
Q ss_pred HHH
Q psy19 439 ALH 441 (494)
Q Consensus 439 ~l~ 441 (494)
.+.
T Consensus 335 d~~ 337 (369)
T 3bt7_A 335 NLE 337 (369)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-12 Score=126.74 Aligned_cols=142 Identities=15% Similarity=0.091 Sum_probs=106.7
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC---CCCee
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK---PACVD 386 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~---~~~~D 386 (494)
.++.+|||+|||+|.+++.+|..+|+..|+|+|+++.+++.|++|+..+++ . ++.++++|+.+++.. .++||
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l----~-~v~~~~~d~~~~~~~~~~~~~fD 153 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGL----K-GARALWGRAEVLAREAGHREAYA 153 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC----S-SEEEEECCHHHHTTSTTTTTCEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC----C-ceEEEECcHHHhhcccccCCCce
Confidence 467899999999999999999888889999999999999999999998875 2 378999999988642 36899
Q ss_pred EEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC--H---HHHHHHHHhccccceeeeeEEEccC--C
Q psy19 387 GIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD--R---KHLIQALHITSALWKCRKQIKINMS--G 459 (494)
Q Consensus 387 ~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~--~---~~l~~~l~~~~~l~~~~~~~~v~~G--g 459 (494)
+|+++- . .+ +..+++.+.++|+|| |+++++.+. . ..+...+...| +...+...+... .
T Consensus 154 ~I~s~a-----~---~~----~~~ll~~~~~~Lkpg-G~l~~~~g~~~~~e~~~~~~~l~~~G--~~~~~~~~~~~p~~~ 218 (249)
T 3g89_A 154 RAVARA-----V---AP----LCVLSELLLPFLEVG-GAAVAMKGPRVEEELAPLPPALERLG--GRLGEVLALQLPLSG 218 (249)
T ss_dssp EEEEES-----S---CC----HHHHHHHHGGGEEEE-EEEEEEECSCCHHHHTTHHHHHHHHT--EEEEEEEEEECTTTC
T ss_pred EEEECC-----c---CC----HHHHHHHHHHHcCCC-eEEEEEeCCCcHHHHHHHHHHHHHcC--CeEEEEEEeeCCCCC
Confidence 999952 1 12 346777899999999 999987752 1 22444555555 344444444333 3
Q ss_pred ceEEEEEEeeCC
Q psy19 460 MKSFVFILNRTA 471 (494)
Q Consensus 460 l~~~i~v~~~~~ 471 (494)
-.+++.++++..
T Consensus 219 ~~R~l~~~~k~~ 230 (249)
T 3g89_A 219 EARHLVVLEKTA 230 (249)
T ss_dssp CEEEEEEEEECS
T ss_pred CcEEEEEEEeCC
Confidence 466777777644
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=8.9e-13 Score=130.03 Aligned_cols=108 Identities=13% Similarity=0.173 Sum_probs=86.4
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCee
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVD 386 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D 386 (494)
.++|.+|||+|||+|.+++.++..+ ++++|+|+|+++.|++.|++++...+. ..+++++++|+.++++ +.+|
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~----~~~v~~~~~D~~~~~~--~~~d 141 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA----PTPVDVIEGDIRDIAI--ENAS 141 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCC----SSCEEEEESCTTTCCC--CSEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhcc----CceEEEeecccccccc--cccc
Confidence 5789999999999999999988764 567999999999999999999987654 4568999999999876 4699
Q ss_pred EEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 387 GIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 387 ~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+|+++--. ..-.. .-...+|+++.++|||| |++++.
T Consensus 142 ~v~~~~~l--~~~~~----~~~~~~l~~i~~~LkpG-G~lii~ 177 (261)
T 4gek_A 142 MVVLNFTL--QFLEP----SERQALLDKIYQGLNPG-GALVLS 177 (261)
T ss_dssp EEEEESCG--GGSCH----HHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred cceeeeee--eecCc----hhHhHHHHHHHHHcCCC-cEEEEE
Confidence 99997421 11111 11345778999999999 998875
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.5e-13 Score=135.65 Aligned_cols=123 Identities=15% Similarity=0.186 Sum_probs=98.4
Q ss_pred HHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc
Q psy19 299 IAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378 (494)
Q Consensus 299 lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l 378 (494)
.+..++....+.++.+|||+|||+|.+++.++..++...++|+|+++.+++.|++|+..+++. +.+..+|+...
T Consensus 184 ~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~------~~~~~~d~~~~ 257 (343)
T 2pjd_A 184 GSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE------GEVFASNVFSE 257 (343)
T ss_dssp HHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC------CEEEECSTTTT
T ss_pred HHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC------CEEEEcccccc
Confidence 355566666556677999999999999999999887789999999999999999999987642 35678888765
Q ss_pred cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 379 CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 379 ~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
+ +++||+|++||||..... ........+++++.++|+|| |.++++++..
T Consensus 258 ~--~~~fD~Iv~~~~~~~g~~---~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~~~ 306 (343)
T 2pjd_A 258 V--KGRFDMIISNPPFHDGMQ---TSLDAAQTLIRGAVRHLNSG-GELRIVANAF 306 (343)
T ss_dssp C--CSCEEEEEECCCCCSSSH---HHHHHHHHHHHHHGGGEEEE-EEEEEEEETT
T ss_pred c--cCCeeEEEECCCcccCcc---CCHHHHHHHHHHHHHhCCCC-cEEEEEEcCC
Confidence 3 468999999999864221 12334678889999999999 9999987753
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.9e-12 Score=120.11 Aligned_cols=117 Identities=21% Similarity=0.254 Sum_probs=87.9
Q ss_pred cchHHHHHHHHHHh---CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 294 TLKPTIAYNMVRLA---SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 294 ~L~e~lAa~ll~la---~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
+..+.++..++..+ ...++.+|||+|||+|.+++.++... ...++|+|+++.+++.|+.|+..+++ ++.+
T Consensus 29 ~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~~ 101 (207)
T 1wy7_A 29 RTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKG------KFKV 101 (207)
T ss_dssp CCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTT------SEEE
T ss_pred cCchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCC------CEEE
Confidence 34555666655544 35578899999999999999998873 24799999999999999999987653 4689
Q ss_pred eeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 371 ~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+++|+.+++ .+||+|++||||+..... . ...+++.+.+++ | +.+++.
T Consensus 102 ~~~d~~~~~---~~~D~v~~~~p~~~~~~~--~----~~~~l~~~~~~l--~-~~~~~~ 148 (207)
T 1wy7_A 102 FIGDVSEFN---SRVDIVIMNPPFGSQRKH--A----DRPFLLKAFEIS--D-VVYSIH 148 (207)
T ss_dssp EESCGGGCC---CCCSEEEECCCCSSSSTT--T----THHHHHHHHHHC--S-EEEEEE
T ss_pred EECchHHcC---CCCCEEEEcCCCccccCC--c----hHHHHHHHHHhc--C-cEEEEE
Confidence 999999864 489999999999865421 1 235566777777 5 644333
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.43 E-value=4.6e-13 Score=126.68 Aligned_cols=133 Identities=11% Similarity=-0.023 Sum_probs=102.3
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
|.++.+.....++.+....++.+|||+|||+|.++..++..++...++|+|+++.+++.|++|+..+++......++.+.
T Consensus 10 p~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~ 89 (217)
T 3jwh_A 10 PISLNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLI 89 (217)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEE
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEE
Confidence 55678888888888877678889999999999999999988776899999999999999999998765421111267899
Q ss_pred eeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 372 VCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 372 ~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
++|+...+...++||+|+++-.+.. + . ...+..+++++.++|+|| |. ++++++
T Consensus 90 ~~d~~~~~~~~~~fD~v~~~~~l~~-~-~----~~~~~~~l~~~~~~Lkpg-G~-li~~~~ 142 (217)
T 3jwh_A 90 QGALTYQDKRFHGYDAATVIEVIEH-L-D----LSRLGAFERVLFEFAQPK-IV-IVTTPN 142 (217)
T ss_dssp ECCTTSCCGGGCSCSEEEEESCGGG-C-C----HHHHHHHHHHHHTTTCCS-EE-EEEEEB
T ss_pred eCCcccccccCCCcCEEeeHHHHHc-C-C----HHHHHHHHHHHHHHcCCC-EE-EEEccC
Confidence 9999776665578999999765432 1 1 123457888999999999 94 444444
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.5e-12 Score=122.83 Aligned_cols=145 Identities=12% Similarity=0.046 Sum_probs=108.9
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEE
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGI 388 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~I 388 (494)
..+|.+|+|+|||||.+++.+|...+...|+|+|+++.+++.|++|++.+|+ .+++.+.++|..+...+...||+|
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl----~~~I~~~~gD~l~~~~~~~~~D~I 94 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGL----TSKIDVRLANGLSAFEEADNIDTI 94 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTC----TTTEEEEECSGGGGCCGGGCCCEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECchhhccccccccCEE
Confidence 3578899999999999999999987777899999999999999999998875 457899999998875433379987
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec-CHHHHHHHHHhccccceeeeeEEEccCCceEEEEEE
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS-DRKHLIQALHITSALWKCRKQIKINMSGMKSFVFIL 467 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~-~~~~l~~~l~~~~~l~~~~~~~~v~~Ggl~~~i~v~ 467 (494)
+. ..++ ..+...++....+.|+++ |++++-.. +...+.+.+...| |.......+..++..-.|.+.
T Consensus 95 vi-----aGmG-----g~lI~~IL~~~~~~l~~~-~~lIlqp~~~~~~lr~~L~~~G--f~i~~E~lv~e~~~~Yeii~~ 161 (230)
T 3lec_A 95 TI-----CGMG-----GRLIADILNNDIDKLQHV-KTLVLQPNNREDDLRKWLAAND--FEIVAEDILTENDKRYEILVV 161 (230)
T ss_dssp EE-----EEEC-----HHHHHHHHHHTGGGGTTC-CEEEEEESSCHHHHHHHHHHTT--EEEEEEEEEEC--CEEEEEEE
T ss_pred EE-----eCCc-----hHHHHHHHHHHHHHhCcC-CEEEEECCCChHHHHHHHHHCC--CEEEEEEEEEECCEEEEEEEE
Confidence 64 0222 345677888999999988 87665432 3455777788777 677776666655554455555
Q ss_pred eeC
Q psy19 468 NRT 470 (494)
Q Consensus 468 ~~~ 470 (494)
.+.
T Consensus 162 ~~~ 164 (230)
T 3lec_A 162 KHG 164 (230)
T ss_dssp EEC
T ss_pred EeC
Confidence 553
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.2e-13 Score=127.57 Aligned_cols=118 Identities=14% Similarity=0.030 Sum_probs=97.9
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
+.+..++.+..++...++.+|||+|||+|.+++.+|...++..++|+|+++.+++.|++|+..+++ ..++.++++|
T Consensus 55 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~~~d 130 (232)
T 3ntv_A 55 VDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHF----ENQVRIIEGN 130 (232)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTC----TTTEEEEESC
T ss_pred cCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECC
Confidence 456777777777766678899999999999999999877789999999999999999999998765 3568999999
Q ss_pred cccc-c-CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 375 VRQL-C-FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 375 a~~l-~-~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
+.+. + ..+++||+|++|.+.. . |..+++.+.++|+|| |.+++
T Consensus 131 ~~~~~~~~~~~~fD~V~~~~~~~-------~----~~~~l~~~~~~Lkpg-G~lv~ 174 (232)
T 3ntv_A 131 ALEQFENVNDKVYDMIFIDAAKA-------Q----SKKFFEIYTPLLKHQ-GLVIT 174 (232)
T ss_dssp GGGCHHHHTTSCEEEEEEETTSS-------S----HHHHHHHHGGGEEEE-EEEEE
T ss_pred HHHHHHhhccCCccEEEEcCcHH-------H----HHHHHHHHHHhcCCC-eEEEE
Confidence 9875 3 3357899999997632 1 566778899999999 98866
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.7e-13 Score=143.04 Aligned_cols=121 Identities=16% Similarity=0.190 Sum_probs=97.1
Q ss_pred HHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-CC
Q psy19 304 VRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-FK 381 (494)
Q Consensus 304 l~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~~ 381 (494)
..++.+.+|.+|||+|||+|..++.+|...+ ...|+|+|+++.+++.+++|++.+|+ . +.+.++|+..++ ..
T Consensus 94 a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~----~--v~~~~~Da~~l~~~~ 167 (464)
T 3m6w_A 94 GVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA----P--LAVTQAPPRALAEAF 167 (464)
T ss_dssp HHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC----C--CEEECSCHHHHHHHH
T ss_pred HHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----e--EEEEECCHHHhhhhc
Confidence 3455778999999999999999999887654 36899999999999999999998875 2 678999998875 23
Q ss_pred CCCeeEEEEcCCCcc-cc----CC------c---cchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 382 PACVDGIVTDLPFGK-RV----GS------K---SNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 382 ~~~~D~IVtNPPYG~-r~----~~------~---~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
.+.||+|++|||+.. .+ .. . ..+..++..++..+.++|||| |++++.|+
T Consensus 168 ~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG-G~LvysTC 230 (464)
T 3m6w_A 168 GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPG-GVLVYSTC 230 (464)
T ss_dssp CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEE-EEEEEEES
T ss_pred cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEEec
Confidence 478999999999831 11 00 0 123456788999999999999 99999877
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-12 Score=145.28 Aligned_cols=117 Identities=13% Similarity=0.059 Sum_probs=94.5
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc-cCCCCCeeEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-CFKPACVDGIV 389 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-~~~~~~~D~IV 389 (494)
+|.+|||+|||||.+++.+|... ...|+++|+++.+++.|++|++.+|+. ..++.++++|+++. +...++||+||
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~---~~~v~~i~~D~~~~l~~~~~~fD~Ii 614 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLT---GRAHRLIQADCLAWLREANEQFDLIF 614 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCC---STTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC---ccceEEEecCHHHHHHhcCCCccEEE
Confidence 67899999999999999998863 246999999999999999999998762 14678999999884 43446899999
Q ss_pred EcCCCccccCC---ccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 390 TDLPFGKRVGS---KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 390 tNPPYG~r~~~---~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+||||...... ..+....|..++..+.++|+|| |.+++.++.
T Consensus 615 ~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lkpg-G~L~~s~~~ 659 (703)
T 3v97_A 615 IDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAG-GTIMFSNNK 659 (703)
T ss_dssp ECCCSBC-------CCBHHHHHHHHHHHHHHHEEEE-EEEEEEECC
T ss_pred ECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCC-cEEEEEECC
Confidence 99997433221 1245678999999999999999 999987765
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=5.6e-12 Score=121.84 Aligned_cols=143 Identities=17% Similarity=0.094 Sum_probs=108.0
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCC-CeeE
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPA-CVDG 387 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~-~~D~ 387 (494)
..+|.+|+|+|||||.+++.+|..+|..+|+|+|+++.+++.|++|++.+|+ .+++.+.++|..+. ++.+ .||+
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl----~~~i~~~~~d~l~~-l~~~~~~D~ 87 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGL----KEKIQVRLANGLAA-FEETDQVSV 87 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC----TTTEEEEECSGGGG-CCGGGCCCE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC----CceEEEEECchhhh-cccCcCCCE
Confidence 3578899999999999999999988778999999999999999999999876 45689999998753 2223 6998
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec-CHHHHHHHHHhccccceeeeeEEEccCCceEEEEE
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS-DRKHLIQALHITSALWKCRKQIKINMSGMKSFVFI 466 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~-~~~~l~~~l~~~~~l~~~~~~~~v~~Ggl~~~i~v 466 (494)
|+.. .++ ..+...++......|+++ |++++-.. ....+.+.+...| |.......+...+..-.|.+
T Consensus 88 Ivia-----G~G-----g~~i~~Il~~~~~~L~~~-~~lVlq~~~~~~~vr~~L~~~G--f~i~~e~lv~e~~~~Yeii~ 154 (225)
T 3kr9_A 88 ITIA-----GMG-----GRLIARILEEGLGKLANV-ERLILQPNNREDDLRIWLQDHG--FQIVAESILEEAGKFYEILV 154 (225)
T ss_dssp EEEE-----EEC-----HHHHHHHHHHTGGGCTTC-CEEEEEESSCHHHHHHHHHHTT--EEEEEEEEEEETTEEEEEEE
T ss_pred EEEc-----CCC-----hHHHHHHHHHHHHHhCCC-CEEEEECCCCHHHHHHHHHHCC--CEEEEEEEEEECCEEEEEEE
Confidence 8752 222 345667888999999998 88776333 3455777777777 67777666665555445555
Q ss_pred Eee
Q psy19 467 LNR 469 (494)
Q Consensus 467 ~~~ 469 (494)
..+
T Consensus 155 ~~~ 157 (225)
T 3kr9_A 155 VEA 157 (225)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-12 Score=137.69 Aligned_cols=127 Identities=19% Similarity=0.225 Sum_probs=99.8
Q ss_pred HHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCC-CeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc
Q psy19 300 AYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPH-TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378 (494)
Q Consensus 300 Aa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~-~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l 378 (494)
+..+..+..+.++.+|||+|||+|..++.++...++ ..++|+|+++.+++.+++|+..+|+ .++.+.++|+..+
T Consensus 248 s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~-----~~v~~~~~D~~~~ 322 (450)
T 2yxl_A 248 SAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI-----KIVKPLVKDARKA 322 (450)
T ss_dssp HHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC-----CSEEEECSCTTCC
T ss_pred hHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-----CcEEEEEcChhhc
Confidence 334445567889999999999999999998887655 7999999999999999999998875 2478899999887
Q ss_pred c--CCCCCeeEEEEcCCCc-ccc-C---------Cc---cchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 379 C--FKPACVDGIVTDLPFG-KRV-G---------SK---SNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 379 ~--~~~~~~D~IVtNPPYG-~r~-~---------~~---~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+ ++++.||+|++|||+. ... . .. ..+..+...++..+.++|||| |++++.|+.
T Consensus 323 ~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG-G~lvy~tcs 391 (450)
T 2yxl_A 323 PEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPG-GRLLYTTCS 391 (450)
T ss_dssp SSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEE-EEEEEEESC
T ss_pred chhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEEeCC
Confidence 5 4446899999999983 211 0 01 123344578899999999999 999998773
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.4e-12 Score=119.07 Aligned_cols=114 Identities=20% Similarity=0.150 Sum_probs=92.3
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
.++.+|||+|||+|.+++.++.. +..++|+|+++.+++.|++++...++......++.+..+|+..+++++++||+|+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 47889999999999999999887 6799999999999999999998776533334467899999999887778999999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
++..+.. +.. ......+++++.++|+|| |++++.+.
T Consensus 107 ~~~~l~~-~~~----~~~~~~~l~~~~~~L~pg-G~l~~~~~ 142 (235)
T 3sm3_A 107 MQAFLTS-VPD----PKERSRIIKEVFRVLKPG-AYLYLVEF 142 (235)
T ss_dssp EESCGGG-CCC----HHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred Ecchhhc-CCC----HHHHHHHHHHHHHHcCCC-eEEEEEEC
Confidence 9876542 222 122446788999999999 99988643
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.7e-12 Score=131.02 Aligned_cols=111 Identities=21% Similarity=0.235 Sum_probs=89.1
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
.++.+|||+|||+|++++. |. .+..++|+|+++.+++.|++|++.+++ ..++.++++|+.++. +.||+|+
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l----~~~v~~~~~D~~~~~---~~fD~Vi 263 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKL----EHKIIPILSDVREVD---VKGNRVI 263 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEESCGGGCC---CCEEEEE
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECChHHhc---CCCcEEE
Confidence 5788999999999999999 76 367999999999999999999998875 345789999999875 6899999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH--HHHHHHHHhc
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR--KHLIQALHIT 443 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~--~~l~~~l~~~ 443 (494)
+|||+... .++..+.++|+|| |.+++.+... ..+.+.+...
T Consensus 264 ~dpP~~~~------------~~l~~~~~~L~~g-G~l~~~~~~~~~~~~~~~l~~~ 306 (336)
T 2yx1_A 264 MNLPKFAH------------KFIDKALDIVEEG-GVIHYYTIGKDFDKAIKLFEKK 306 (336)
T ss_dssp ECCTTTGG------------GGHHHHHHHEEEE-EEEEEEEEESSSHHHHHHHHHH
T ss_pred ECCcHhHH------------HHHHHHHHHcCCC-CEEEEEEeecCchHHHHHHHHh
Confidence 99997532 4556788899998 9888865432 3344445443
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.7e-12 Score=122.17 Aligned_cols=117 Identities=10% Similarity=0.102 Sum_probs=92.2
Q ss_pred cchHHHHHHH---HHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 294 TLKPTIAYNM---VRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 294 ~L~e~lAa~l---l~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
|.+..+++.+ +......++.+|||+|||+|++++.++...+...|+|+|+++.+++.|+.|+..+ .++.+
T Consensus 54 ~~~~~~~~~i~~~l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-------~~v~~ 126 (230)
T 1fbn_A 54 PNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-------ENIIP 126 (230)
T ss_dssp TTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-------TTEEE
T ss_pred cchhHHHHHHHhcccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC-------CCeEE
Confidence 4455566666 3444567889999999999999999998865679999999999999999997643 34688
Q ss_pred eeecccc----ccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 371 LVCNVRQ----LCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 371 ~~~Da~~----l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+.+|+.. +++. ++||+|+.++|.. ..+..+++++.++|+|| |++++.
T Consensus 127 ~~~d~~~~~~~~~~~-~~~D~v~~~~~~~----------~~~~~~l~~~~~~Lkpg-G~l~i~ 177 (230)
T 1fbn_A 127 ILGDANKPQEYANIV-EKVDVIYEDVAQP----------NQAEILIKNAKWFLKKG-GYGMIA 177 (230)
T ss_dssp EECCTTCGGGGTTTS-CCEEEEEECCCST----------THHHHHHHHHHHHEEEE-EEEEEE
T ss_pred EECCCCCcccccccC-ccEEEEEEecCCh----------hHHHHHHHHHHHhCCCC-cEEEEE
Confidence 8999987 6655 6899999887521 12456777899999999 998885
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.8e-12 Score=122.18 Aligned_cols=145 Identities=14% Similarity=0.099 Sum_probs=109.3
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEE
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGI 388 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~I 388 (494)
+.++.+|+|+|||+|.+++.+|..++...|+|+|+++.+++.|++|++.+|+ .+++.+.++|..+...+...||+|
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl----~~~I~v~~gD~l~~~~~~~~~D~I 94 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGL----TEQIDVRKGNGLAVIEKKDAIDTI 94 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC----TTTEEEEECSGGGGCCGGGCCCEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC----CceEEEEecchhhccCccccccEE
Confidence 3578899999999999999999987777899999999999999999999875 456899999998864432359988
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec-CHHHHHHHHHhccccceeeeeEEEccCCceEEEEEE
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS-DRKHLIQALHITSALWKCRKQIKINMSGMKSFVFIL 467 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~-~~~~l~~~l~~~~~l~~~~~~~~v~~Ggl~~~i~v~ 467 (494)
|. ..++ ..+...++....+.|+++ +++++-.- ....+.+.+.+.| |.......+...+..-.+...
T Consensus 95 vi-----agmG-----g~lI~~IL~~~~~~L~~~-~~lIlq~~~~~~~lr~~L~~~G--f~i~~E~lv~e~~k~Yeii~~ 161 (244)
T 3gnl_A 95 VI-----AGMG-----GTLIRTILEEGAAKLAGV-TKLILQPNIAAWQLREWSEQNN--WLITSEAILREDNKVYEIMVL 161 (244)
T ss_dssp EE-----EEEC-----HHHHHHHHHHTGGGGTTC-CEEEEEESSCHHHHHHHHHHHT--EEEEEEEEEEETTEEEEEEEE
T ss_pred EE-----eCCc-----hHHHHHHHHHHHHHhCCC-CEEEEEcCCChHHHHHHHHHCC--CEEEEEEEEEECCEEEEEEEE
Confidence 75 1222 345677888999999987 87665433 3455777777777 566666666555554455555
Q ss_pred eeC
Q psy19 468 NRT 470 (494)
Q Consensus 468 ~~~ 470 (494)
.+.
T Consensus 162 ~~~ 164 (244)
T 3gnl_A 162 APS 164 (244)
T ss_dssp EEC
T ss_pred EeC
Confidence 543
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.40 E-value=8.4e-13 Score=124.90 Aligned_cols=131 Identities=11% Similarity=0.029 Sum_probs=99.4
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
.++.+.....++.+....++.+|||+|||+|.++..++..++...++|+|+++.+++.|++++...++......++.+.+
T Consensus 11 ~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~ 90 (219)
T 3jwg_A 11 LNLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQ 90 (219)
T ss_dssp -CHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEE
T ss_pred CcchHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEe
Confidence 35777777777777766678899999999999999999887668999999999999999999987654211112678999
Q ss_pred eccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 373 CNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 373 ~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+|+..++...++||+|+++-.+.. +. ......+++++.++|+|| |.+ +.++
T Consensus 91 ~d~~~~~~~~~~fD~V~~~~~l~~-~~-----~~~~~~~l~~~~~~Lkpg-G~~-i~~~ 141 (219)
T 3jwg_A 91 SSLVYRDKRFSGYDAATVIEVIEH-LD-----ENRLQAFEKVLFEFTRPQ-TVI-VSTP 141 (219)
T ss_dssp CCSSSCCGGGTTCSEEEEESCGGG-CC-----HHHHHHHHHHHHTTTCCS-EEE-EEEE
T ss_pred CcccccccccCCCCEEEEHHHHHh-CC-----HHHHHHHHHHHHHhhCCC-EEE-EEcc
Confidence 999777666679999999755432 11 112457788999999998 844 4444
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.6e-12 Score=121.77 Aligned_cols=129 Identities=12% Similarity=0.037 Sum_probs=103.7
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
+.+.+..++.++..+...++.+|||+|||+|.+++.++.. +..++|+|+++.+++.|++|+..+++ ..++.+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~~~~ 146 (248)
T 2yvl_A 73 QIIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNL----GKNVKFFN 146 (248)
T ss_dssp CCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTC----CTTEEEEC
T ss_pred CcccchhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCC----CCcEEEEE
Confidence 3445666678888888889999999999999999999887 67999999999999999999987754 34578899
Q ss_pred eccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHH
Q psy19 373 CNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALH 441 (494)
Q Consensus 373 ~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~ 441 (494)
+|+.+..+.++.||+|++|||.. ..+++.+.++|+|| |++++.++....+.+...
T Consensus 147 ~d~~~~~~~~~~~D~v~~~~~~~-------------~~~l~~~~~~L~~g-G~l~~~~~~~~~~~~~~~ 201 (248)
T 2yvl_A 147 VDFKDAEVPEGIFHAAFVDVREP-------------WHYLEKVHKSLMEG-APVGFLLPTANQVIKLLE 201 (248)
T ss_dssp SCTTTSCCCTTCBSEEEECSSCG-------------GGGHHHHHHHBCTT-CEEEEEESSHHHHHHHHH
T ss_pred cChhhcccCCCcccEEEECCcCH-------------HHHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHH
Confidence 99987542456899999999821 13455788999999 999999997655555444
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=137.89 Aligned_cols=128 Identities=19% Similarity=0.130 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccc
Q psy19 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVR 376 (494)
Q Consensus 297 e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~ 376 (494)
...+..++.+..+.++.+|||+|||+|+.++.++...++..++|+|+++.+++.+++|+..+|+ .+.+.++|+.
T Consensus 232 d~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~------~~~~~~~D~~ 305 (429)
T 1sqg_A 232 DASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM------KATVKQGDGR 305 (429)
T ss_dssp CHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC------CCEEEECCTT
T ss_pred CHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC------CeEEEeCchh
Confidence 3444555566778899999999999999999999887668999999999999999999998765 2478899998
Q ss_pred ccc--CCCCCeeEEEEcCCCccc-c-CC---------c---cchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 377 QLC--FKPACVDGIVTDLPFGKR-V-GS---------K---SNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 377 ~l~--~~~~~~D~IVtNPPYG~r-~-~~---------~---~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
.++ ++++.||+|++|||+... . .. . ..+..++..++..+.++|||| |++++.|+
T Consensus 306 ~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpG-G~lvystc 375 (429)
T 1sqg_A 306 YPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTG-GTLVYATC 375 (429)
T ss_dssp CTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEE-EEEEEEES
T ss_pred hchhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEEC
Confidence 875 445689999999998421 1 00 0 123456778999999999999 99999875
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-12 Score=130.28 Aligned_cols=123 Identities=16% Similarity=0.154 Sum_probs=99.9
Q ss_pred cchHHHHHHHHHHhC-CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 294 TLKPTIAYNMVRLAS-PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 294 ~L~e~lAa~ll~la~-~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
++....+..++.... +.++.+|||+|||+|.+++.++..+ +..++|+|+++.+++.|++|+..+++ ..++.+.+
T Consensus 99 ~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~ 173 (312)
T 3vc1_A 99 RLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRI----DDHVRSRV 173 (312)
T ss_dssp HHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEE
T ss_pred hHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC----CCceEEEE
Confidence 444555555666665 7789999999999999999988764 57899999999999999999998765 44678999
Q ss_pred eccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 373 CNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 373 ~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+|+.++++++++||+|+++-.+.. + + ...+++++.++|+|| |+++++++
T Consensus 174 ~d~~~~~~~~~~fD~V~~~~~l~~-~----~----~~~~l~~~~~~Lkpg-G~l~~~~~ 222 (312)
T 3vc1_A 174 CNMLDTPFDKGAVTASWNNESTMY-V----D----LHDLFSEHSRFLKVG-GRYVTITG 222 (312)
T ss_dssp CCTTSCCCCTTCEEEEEEESCGGG-S----C----HHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred CChhcCCCCCCCEeEEEECCchhh-C----C----HHHHHHHHHHHcCCC-cEEEEEEc
Confidence 999998887789999999754331 1 1 567788999999999 99998764
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.40 E-value=7.1e-12 Score=117.10 Aligned_cols=103 Identities=19% Similarity=0.205 Sum_probs=75.7
Q ss_pred HHHHHHHHHHh---CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 297 PTIAYNMVRLA---SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 297 e~lAa~ll~la---~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
..++..|+.++ ...++.+|||+|||+|.+++.++.. +...++|+|+++.+++.|++|+. ++.++++
T Consensus 34 ~~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~----------~~~~~~~ 102 (200)
T 1ne2_A 34 ASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG----------GVNFMVA 102 (200)
T ss_dssp HHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT----------TSEEEEC
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC----------CCEEEEC
Confidence 34444444433 4557889999999999999998876 33479999999999999999976 2478999
Q ss_pred ccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcc
Q psy19 374 NVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIV 419 (494)
Q Consensus 374 Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvL 419 (494)
|+.+++ ++||+|++||||+..... ....+++++.+++
T Consensus 103 d~~~~~---~~~D~v~~~~p~~~~~~~------~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 103 DVSEIS---GKYDTWIMNPPFGSVVKH------SDRAFIDKAFETS 139 (200)
T ss_dssp CGGGCC---CCEEEEEECCCC-------------CHHHHHHHHHHE
T ss_pred cHHHCC---CCeeEEEECCCchhccCc------hhHHHHHHHHHhc
Confidence 999864 689999999999854321 1235666777777
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.6e-12 Score=119.31 Aligned_cols=137 Identities=15% Similarity=0.184 Sum_probs=99.5
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt 390 (494)
++.+|||+|||+|.+++.++..+++..++|+|+++.+++.|+.|+..+++ . .+.+.++|+.+++ +.++||+|++
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----~-~v~~~~~d~~~~~-~~~~~D~i~~ 138 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL----E-NIEPVQSRVEEFP-SEPPFDGVIS 138 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC----S-SEEEEECCTTTSC-CCSCEEEEEC
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC----C-CeEEEecchhhCC-ccCCcCEEEE
Confidence 47899999999999999999888888999999999999999999997764 2 2789999998875 3468999999
Q ss_pred cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH--HHHHHHHHhccccceeeeeE--EEccCCceEEEEE
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR--KHLIQALHITSALWKCRKQI--KINMSGMKSFVFI 466 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~--~~l~~~l~~~~~l~~~~~~~--~v~~Ggl~~~i~v 466 (494)
+. . .+ +..++..+.++|+|| |.+++..+.. ..+...+. + |...+.. .+...+-..++++
T Consensus 139 ~~-----~---~~----~~~~l~~~~~~L~~g-G~l~~~~~~~~~~~~~~~~~--g--~~~~~~~~~~~~~~~~~~~~~~ 201 (207)
T 1jsx_A 139 RA-----F---AS----LNDMVSWCHHLPGEQ-GRFYALKGQMPEDEIALLPE--E--YQVESVVKLQVPALDGERHLVV 201 (207)
T ss_dssp SC-----S---SS----HHHHHHHHTTSEEEE-EEEEEEESSCCHHHHHTSCT--T--EEEEEEEEEECC--CCEEEEEE
T ss_pred ec-----c---CC----HHHHHHHHHHhcCCC-cEEEEEeCCCchHHHHHHhc--C--CceeeeeeeccCCCCCceEEEE
Confidence 64 1 11 457788999999999 9998876532 22332222 2 4444332 3333344556666
Q ss_pred EeeC
Q psy19 467 LNRT 470 (494)
Q Consensus 467 ~~~~ 470 (494)
+++.
T Consensus 202 ~~k~ 205 (207)
T 1jsx_A 202 IKAN 205 (207)
T ss_dssp EEEC
T ss_pred EEec
Confidence 6553
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=3e-12 Score=122.80 Aligned_cols=120 Identities=15% Similarity=0.171 Sum_probs=91.2
Q ss_pred cchHHHHHHHHH---HhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCccccee
Q psy19 294 TLKPTIAYNMVR---LASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVS 369 (494)
Q Consensus 294 ~L~e~lAa~ll~---la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~ 369 (494)
|.+..+++.++. .....++.+|||+|||+|++++.++... +...++|+|+++.+++.+.++++.+ .++.
T Consensus 57 ~~~~~~~~~~~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-------~~v~ 129 (233)
T 2ipx_A 57 PFRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-------TNII 129 (233)
T ss_dssp TTTCHHHHHHHTTCSCCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-------TTEE
T ss_pred ccchhHHHHHHhHHheecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-------CCeE
Confidence 344555555543 3346788999999999999999998874 5679999999999999999888753 2467
Q ss_pred eeeecccc---ccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 370 PLVCNVRQ---LCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 370 ~~~~Da~~---l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
++++|+.+ +++.+++||+|++|+|. . + ....++.++.++|+|| |++++.+.
T Consensus 130 ~~~~d~~~~~~~~~~~~~~D~V~~~~~~------~-~---~~~~~~~~~~~~Lkpg-G~l~i~~~ 183 (233)
T 2ipx_A 130 PVIEDARHPHKYRMLIAMVDVIFADVAQ------P-D---QTRIVALNAHTFLRNG-GHFVISIK 183 (233)
T ss_dssp EECSCTTCGGGGGGGCCCEEEEEECCCC------T-T---HHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred EEEcccCChhhhcccCCcEEEEEEcCCC------c-c---HHHHHHHHHHHHcCCC-eEEEEEEc
Confidence 89999987 34445789999999981 1 1 1334566799999999 99888544
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.4e-13 Score=130.75 Aligned_cols=100 Identities=18% Similarity=0.214 Sum_probs=80.5
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
.++.+|||+|||+|.+++.++.. +..|+|+|+++.+++.|++|+..+++ ..++.++++|+.+++ .+++||+|+
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~~~-~~~~~D~v~ 149 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGI----ADKIEFICGDFLLLA-SFLKADVVF 149 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC----GGGEEEEESCHHHHG-GGCCCSEEE
T ss_pred cCCCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCC----CcCeEEEECChHHhc-ccCCCCEEE
Confidence 36889999999999999999987 58999999999999999999998764 346889999999886 347899999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcE
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGR 425 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~ 425 (494)
+||||+... ... ..+.++.++|+|| |.
T Consensus 150 ~~~~~~~~~-~~~-------~~~~~~~~~L~pg-G~ 176 (241)
T 3gdh_A 150 LSPPWGGPD-YAT-------AETFDIRTMMSPD-GF 176 (241)
T ss_dssp ECCCCSSGG-GGG-------SSSBCTTTSCSSC-HH
T ss_pred ECCCcCCcc-hhh-------hHHHHHHhhcCCc-ce
Confidence 999997422 111 1222467788887 65
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.3e-12 Score=123.86 Aligned_cols=121 Identities=19% Similarity=0.206 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecc
Q psy19 296 KPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNV 375 (494)
Q Consensus 296 ~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da 375 (494)
...++..++......++.+|||+|||+|.+++.++... +..++|+|+++.+++.|++++...++ ..++.+..+|+
T Consensus 46 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~~~~~~~d~ 120 (273)
T 3bus_A 46 TDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGL----ANRVTFSYADA 120 (273)
T ss_dssp HHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEECCT
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCC----CcceEEEECcc
Confidence 33455666777777889999999999999999988765 68999999999999999999987764 34678999999
Q ss_pred ccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 376 RQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 376 ~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
.++++++++||+|+++..+.. +. + ...+++++.++|+|| |++++..
T Consensus 121 ~~~~~~~~~fD~v~~~~~l~~-~~---~----~~~~l~~~~~~L~pg-G~l~i~~ 166 (273)
T 3bus_A 121 MDLPFEDASFDAVWALESLHH-MP---D----RGRALREMARVLRPG-GTVAIAD 166 (273)
T ss_dssp TSCCSCTTCEEEEEEESCTTT-SS---C----HHHHHHHHHTTEEEE-EEEEEEE
T ss_pred ccCCCCCCCccEEEEechhhh-CC---C----HHHHHHHHHHHcCCC-eEEEEEE
Confidence 999887789999999876542 11 2 246777899999999 9988865
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.4e-12 Score=126.62 Aligned_cols=124 Identities=20% Similarity=0.143 Sum_probs=90.6
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccC--CCCcccceeeeeecccc-cc--CCCCC
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSG--NLNRELKVSPLVCNVRQ-LC--FKPAC 384 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~--~~~~~~~i~~~~~Da~~-l~--~~~~~ 384 (494)
.++.+|||+|||+|.+++.+|..+|+..++|+|+++.+++.|+.|+..... ..+ ..++.++++|+.. ++ +++++
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~-~~nv~~~~~d~~~~l~~~~~~~~ 123 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGG-FQNIACLRSNAMKHLPNFFYKGQ 123 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCC-CTTEEEEECCTTTCHHHHCCTTC
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcC-CCeEEEEECcHHHhhhhhCCCcC
Confidence 356789999999999999999998889999999999999999999864210 001 2457899999987 55 66789
Q ss_pred eeEEEEcCC--CccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHH
Q psy19 385 VDGIVTDLP--FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLI 437 (494)
Q Consensus 385 ~D~IVtNPP--YG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~ 437 (494)
+|.|+++.| |...... ....++..+++++.++|+|| |.+++.+.......
T Consensus 124 ~D~v~~~~~dp~~k~~h~--krr~~~~~~l~~~~~~LkpG-G~l~~~td~~~~~~ 175 (235)
T 3ckk_A 124 LTKMFFLFPDPHFKRTKH--KWRIISPTLLAEYAYVLRVG-GLVYTITDVLELHD 175 (235)
T ss_dssp EEEEEEESCC-------------CCCHHHHHHHHHHEEEE-EEEEEEESCHHHHH
T ss_pred eeEEEEeCCCchhhhhhh--hhhhhhHHHHHHHHHHCCCC-CEEEEEeCCHHHHH
Confidence 999988754 3221100 01112356888999999999 99999998765433
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.9e-12 Score=125.85 Aligned_cols=114 Identities=17% Similarity=0.215 Sum_probs=91.8
Q ss_pred HHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC
Q psy19 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380 (494)
Q Consensus 301 a~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~ 380 (494)
..++......++.+|||+|||+|.++..++..+ ..++|+|+++.+++.|++++...++ .++.+.++|+..+++
T Consensus 27 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~-----~~v~~~~~d~~~l~~ 99 (260)
T 1vl5_A 27 AKLMQIAALKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGH-----QQVEYVQGDAEQMPF 99 (260)
T ss_dssp HHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEECCC-CCCS
T ss_pred HHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCC-----CceEEEEecHHhCCC
Confidence 345566677788999999999999999988874 4999999999999999999987654 247899999999988
Q ss_pred CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
++++||+|+++-.... + .+ ...+++++.++|+|| |++++..
T Consensus 100 ~~~~fD~V~~~~~l~~-~---~d----~~~~l~~~~r~Lkpg-G~l~~~~ 140 (260)
T 1vl5_A 100 TDERFHIVTCRIAAHH-F---PN----PASFVSEAYRVLKKG-GQLLLVD 140 (260)
T ss_dssp CTTCEEEEEEESCGGG-C---SC----HHHHHHHHHHHEEEE-EEEEEEE
T ss_pred CCCCEEEEEEhhhhHh-c---CC----HHHHHHHHHHHcCCC-CEEEEEE
Confidence 8789999999854331 1 12 236777899999999 9988863
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.39 E-value=3.8e-12 Score=129.17 Aligned_cols=135 Identities=13% Similarity=0.094 Sum_probs=101.9
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhcc----CCC--Ccc
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNS----GNL--NRE 365 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g----~~~--~~~ 365 (494)
+...+..++.++..+...++.+|||+|||+|.+++.++.. .+...++|+|+++.+++.|++|+...+ ++. +..
T Consensus 87 ~~~~~~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~ 166 (336)
T 2b25_A 87 AITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWP 166 (336)
T ss_dssp CCCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCC
T ss_pred cccCHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccC
Confidence 3466777778888888889999999999999999999887 466899999999999999999998643 110 112
Q ss_pred cceeeeeeccccc--cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHH
Q psy19 366 LKVSPLVCNVRQL--CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALH 441 (494)
Q Consensus 366 ~~i~~~~~Da~~l--~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~ 441 (494)
.++.+.++|+.+. ++++++||+|++|+|-.. .++.++.++|+|| |++++.++....+.+.+.
T Consensus 167 ~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~~~~-------------~~l~~~~~~Lkpg-G~lv~~~~~~~~~~~~~~ 230 (336)
T 2b25_A 167 DNVDFIHKDISGATEDIKSLTFDAVALDMLNPH-------------VTLPVFYPHLKHG-GVCAVYVVNITQVIELLD 230 (336)
T ss_dssp CCEEEEESCTTCCC-------EEEEEECSSSTT-------------TTHHHHGGGEEEE-EEEEEEESSHHHHHHHHH
T ss_pred CceEEEECChHHcccccCCCCeeEEEECCCCHH-------------HHHHHHHHhcCCC-cEEEEEeCCHHHHHHHHH
Confidence 4678999999886 445568999999987221 1456799999999 999999987655544443
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.39 E-value=9.4e-12 Score=116.59 Aligned_cols=116 Identities=14% Similarity=0.090 Sum_probs=92.4
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEE
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGI 388 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~I 388 (494)
..++.+|||+|||+|.+++.++.. +...++|+|+++.+++.|++|+..+++ .. +.+.++|+...+ +++||+|
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~----~~-v~~~~~d~~~~~--~~~fD~i 129 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKL-GAKSVLATDISDESMTAAEENAALNGI----YD-IALQKTSLLADV--DGKFDLI 129 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTC----CC-CEEEESSTTTTC--CSCEEEE
T ss_pred ccCCCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC----Cc-eEEEeccccccC--CCCceEE
Confidence 457889999999999999998875 446999999999999999999998764 22 689999997753 4789999
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec---CHHHHHHHHHhcc
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS---DRKHLIQALHITS 444 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~---~~~~l~~~l~~~~ 444 (494)
++|+|+. .+..+++++.++|+|| |++++... ....+...+...|
T Consensus 130 ~~~~~~~-----------~~~~~l~~~~~~L~~g-G~l~~~~~~~~~~~~~~~~~~~~G 176 (205)
T 3grz_A 130 VANILAE-----------ILLDLIPQLDSHLNED-GQVIFSGIDYLQLPKIEQALAENS 176 (205)
T ss_dssp EEESCHH-----------HHHHHGGGSGGGEEEE-EEEEEEEEEGGGHHHHHHHHHHTT
T ss_pred EECCcHH-----------HHHHHHHHHHHhcCCC-CEEEEEecCcccHHHHHHHHHHcC
Confidence 9999863 2467788999999999 99888532 2344666666655
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-12 Score=125.93 Aligned_cols=121 Identities=16% Similarity=0.223 Sum_probs=89.4
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCC----Ccccceeeeeecccc-cc--CCC
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNL----NRELKVSPLVCNVRQ-LC--FKP 382 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~----~~~~~i~~~~~Da~~-l~--~~~ 382 (494)
.++..|||+|||+|.+++.+|..+++..++|+|+++.+++.|++|+..+.... ++ .++.++++|+.+ ++ +..
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSCGGGTSCT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHHHHHhccc
Confidence 46789999999999999999999888899999999999999999998751000 11 357899999987 55 556
Q ss_pred CCeeEEEEcC--CCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHH
Q psy19 383 ACVDGIVTDL--PFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRK 434 (494)
Q Consensus 383 ~~~D~IVtNP--PYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~ 434 (494)
+++|.|+.+. |+......... .++..++.++.++|+|| |.+++.+....
T Consensus 127 ~~~d~v~~~~p~p~~k~~~~~~r--~~~~~~l~~~~~~Lkpg-G~l~~~td~~~ 177 (246)
T 2vdv_E 127 GQLSKMFFCFPDPHFKQRKHKAR--IITNTLLSEYAYVLKEG-GVVYTITDVKD 177 (246)
T ss_dssp TCEEEEEEESCCCC------CSS--CCCHHHHHHHHHHEEEE-EEEEEEESCHH
T ss_pred cccCEEEEECCCcccccchhHHh--hccHHHHHHHHHHcCCC-CEEEEEeccHH
Confidence 7899887663 33211111111 12467888999999999 99999887654
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.3e-13 Score=140.55 Aligned_cols=140 Identities=17% Similarity=0.111 Sum_probs=104.1
Q ss_pred cccccccccc-cccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHh
Q psy19 280 TSLHRRNIVE-FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLH 357 (494)
Q Consensus 280 ~sL~~Rgy~~-~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~ 357 (494)
.+.++.|+.. ..++++ .+..++.+.+|.+|||+|||+|+.++.+|...+ ...|+|+|+++.+++.+++|++.
T Consensus 79 ~~~~~~G~~~vQd~ss~------l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r 152 (456)
T 3m4x_A 79 SFLHQAGYEYSQEPSAM------IVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIER 152 (456)
T ss_dssp SHHHHTTSCEECCTTTH------HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHH
T ss_pred ChHHhCCcEEEECHHHH------HHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 3556666632 223322 233445678999999999999999998886533 46899999999999999999999
Q ss_pred ccCCCCcccceeeeeecccccc-CCCCCeeEEEEcCCCcc-cc--C-----------CccchHHHHHHHHHHHhhcccCC
Q psy19 358 NSGNLNRELKVSPLVCNVRQLC-FKPACVDGIVTDLPFGK-RV--G-----------SKSNNFLLYRLFLIEIGKIVRPQ 422 (494)
Q Consensus 358 ~g~~~~~~~~i~~~~~Da~~l~-~~~~~~D~IVtNPPYG~-r~--~-----------~~~~~~~ly~~fL~~l~rvLkpg 422 (494)
+|+ .++.+.++|+..++ ..++.||+|++|||+.. .. . ....+..+...+|..+.++||||
T Consensus 153 ~g~-----~nv~v~~~Da~~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG 227 (456)
T 3m4x_A 153 WGV-----SNAIVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNK 227 (456)
T ss_dssp HTC-----SSEEEECCCHHHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEE
T ss_pred cCC-----CceEEEeCCHHHhhhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 875 24688899998874 22478999999999621 11 0 00123456778999999999999
Q ss_pred CcEEEEEec
Q psy19 423 IGRAILLTS 431 (494)
Q Consensus 423 ~G~lvllt~ 431 (494)
|++++.|+
T Consensus 228 -G~LvYsTC 235 (456)
T 3m4x_A 228 -GQLIYSTC 235 (456)
T ss_dssp -EEEEEEES
T ss_pred -cEEEEEEe
Confidence 99999887
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=4.9e-12 Score=116.97 Aligned_cols=113 Identities=12% Similarity=0.122 Sum_probs=91.3
Q ss_pred HHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCC
Q psy19 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKP 382 (494)
Q Consensus 303 ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~ 382 (494)
++.+....++.+|||+|||+|.+++.++.. +..++|+|+++.+++.|++++...++ ..+.+.++|+..+++ +
T Consensus 24 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~d~~~~~~-~ 95 (199)
T 2xvm_A 24 VLEAVKVVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENL-----DNLHTRVVDLNNLTF-D 95 (199)
T ss_dssp HHHHTTTSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTC-----TTEEEEECCGGGCCC-C
T ss_pred HHHHhhccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCC-----CCcEEEEcchhhCCC-C
Confidence 444556667789999999999999998887 67999999999999999999987654 247899999999877 6
Q ss_pred CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 383 ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 383 ~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
++||+|+++.++.. +. ..+ ...+++++.++|+|| |++++++
T Consensus 96 ~~~D~v~~~~~l~~-~~-~~~----~~~~l~~~~~~L~~g-G~l~~~~ 136 (199)
T 2xvm_A 96 RQYDFILSTVVLMF-LE-AKT----IPGLIANMQRCTKPG-GYNLIVA 136 (199)
T ss_dssp CCEEEEEEESCGGG-SC-GGG----HHHHHHHHHHTEEEE-EEEEEEE
T ss_pred CCceEEEEcchhhh-CC-HHH----HHHHHHHHHHhcCCC-eEEEEEE
Confidence 79999999987653 21 112 346777899999999 9988765
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.9e-12 Score=124.58 Aligned_cols=120 Identities=21% Similarity=0.228 Sum_probs=98.2
Q ss_pred HHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc
Q psy19 298 TIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ 377 (494)
Q Consensus 298 ~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~ 377 (494)
.++..+.......++.+|||+|||+|.++..++..+|+..++|+|+++.+++.|+.++...++ .++.+.++|+..
T Consensus 24 ~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~d~~~ 98 (276)
T 3mgg_A 24 TLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI-----KNVKFLQANIFS 98 (276)
T ss_dssp HHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEECCGGG
T ss_pred HHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEccccc
Confidence 444455555556788999999999999999999988889999999999999999999987764 247899999999
Q ss_pred ccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 378 LCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 378 l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+++++++||+|+++..+..- . + ...+++++.++|+|| |.+++..+
T Consensus 99 ~~~~~~~fD~v~~~~~l~~~-~---~----~~~~l~~~~~~L~pg-G~l~~~~~ 143 (276)
T 3mgg_A 99 LPFEDSSFDHIFVCFVLEHL-Q---S----PEEALKSLKKVLKPG-GTITVIEG 143 (276)
T ss_dssp CCSCTTCEEEEEEESCGGGC-S---C----HHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred CCCCCCCeeEEEEechhhhc-C---C----HHHHHHHHHHHcCCC-cEEEEEEc
Confidence 98877899999998765421 1 2 236777899999999 99988764
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-11 Score=130.85 Aligned_cols=127 Identities=18% Similarity=0.168 Sum_probs=97.6
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
.+..+.+...++..+...++.+|||+|||+|++++.+|.. +..++|+|+++.+++.|++|+..+++ .++.+++
T Consensus 268 ~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~-----~~v~f~~ 340 (433)
T 1uwv_A 268 AGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGL-----QNVTFYH 340 (433)
T ss_dssp HHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEE
T ss_pred HHHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCC-----CceEEEE
Confidence 3457778888888888888899999999999999999887 67999999999999999999998765 2578999
Q ss_pred eccccc----cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHH
Q psy19 373 CNVRQL----CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQAL 440 (494)
Q Consensus 373 ~Da~~l----~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l 440 (494)
+|+.+. ++.+++||+|++||||.. .. ++.. .+.+ ++| ++++++++++..+.+.+
T Consensus 341 ~d~~~~l~~~~~~~~~fD~Vv~dPPr~g---~~----~~~~----~l~~-~~p--~~ivyvsc~p~tlard~ 398 (433)
T 1uwv_A 341 ENLEEDVTKQPWAKNGFDKVLLDPARAG---AA----GVMQ----QIIK-LEP--IRIVYVSCNPATLARDS 398 (433)
T ss_dssp CCTTSCCSSSGGGTTCCSEEEECCCTTC---CH----HHHH----HHHH-HCC--SEEEEEESCHHHHHHHH
T ss_pred CCHHHHhhhhhhhcCCCCEEEECCCCcc---HH----HHHH----HHHh-cCC--CeEEEEECChHHHHhhH
Confidence 999873 344568999999999852 11 2222 2322 455 45777788876665544
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.5e-12 Score=137.41 Aligned_cols=121 Identities=16% Similarity=0.108 Sum_probs=96.2
Q ss_pred HHhCCC--CCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC-
Q psy19 305 RLASPI--PGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF- 380 (494)
Q Consensus 305 ~la~~~--~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~- 380 (494)
.+..+. ++.+|||+|||+|...+.+|...+ ...|+|+|+++.+++.+++|++.+|+ .++.+.++|+..++.
T Consensus 109 ~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~-----~nv~~~~~D~~~~~~~ 183 (479)
T 2frx_A 109 AALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI-----SNVALTHFDGRVFGAA 183 (479)
T ss_dssp HHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC-----CSEEEECCCSTTHHHH
T ss_pred HHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEeCCHHHhhhh
Confidence 344556 899999999999999999887643 47999999999999999999998875 246889999988753
Q ss_pred CCCCeeEEEEcCCCc-ccc----CC------c---cchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 381 KPACVDGIVTDLPFG-KRV----GS------K---SNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG-~r~----~~------~---~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
..+.||.|++|||+. ... .. . ..+..+...+|.++.++|||| |++++.|+
T Consensus 184 ~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG-G~LvysTc 247 (479)
T 2frx_A 184 VPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG-GTLVYSTC 247 (479)
T ss_dssp STTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEES
T ss_pred ccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCC-CEEEEecc
Confidence 346899999999983 111 00 0 123456778999999999999 99999877
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.8e-12 Score=124.59 Aligned_cols=136 Identities=15% Similarity=0.152 Sum_probs=102.5
Q ss_pred ccccccccccc---ccccccccccchHHHHHHHHHHh---CCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHH
Q psy19 274 GLPVTQTSLHR---RNIVEFNITTLKPTIAYNMVRLA---SPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEK 346 (494)
Q Consensus 274 ~l~lsg~sL~~---Rgy~~~~~a~L~e~lAa~ll~la---~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~ 346 (494)
|-...||.+.+ ..||. =.|-+..|||+++.-. .++||++|||+|||+|++...+|.. .|...|+|+|+++.
T Consensus 36 g~~vyge~~~~~~~~e~r~--w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~ 113 (233)
T 4df3_A 36 GQRVYGERIFRYNGEEYRE--WNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPR 113 (233)
T ss_dssp TCCSSSCCEEEETTEEEEE--CCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHH
T ss_pred CCcccCceEEEcCCceeee--ECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHH
Confidence 33444555432 24442 3468889999987633 4789999999999999999998876 67789999999999
Q ss_pred HHHHHHHHHHhccCCCCcccceeeeeeccccc---cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCC
Q psy19 347 LVLKTQANVLHNSGNLNRELKVSPLVCNVRQL---CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQI 423 (494)
Q Consensus 347 al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l---~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~ 423 (494)
|++.+++++...+ ++..+.+|+... +...+.+|+|++|.|+.. + ...++.++.++||||
T Consensus 114 ~~~~l~~~a~~~~-------ni~~V~~d~~~p~~~~~~~~~vDvVf~d~~~~~------~----~~~~l~~~~r~LKpG- 175 (233)
T 4df3_A 114 VMRDLLTVVRDRR-------NIFPILGDARFPEKYRHLVEGVDGLYADVAQPE------Q----AAIVVRNARFFLRDG- 175 (233)
T ss_dssp HHHHHHHHSTTCT-------TEEEEESCTTCGGGGTTTCCCEEEEEECCCCTT------H----HHHHHHHHHHHEEEE-
T ss_pred HHHHHHHhhHhhc-------CeeEEEEeccCccccccccceEEEEEEeccCCh------h----HHHHHHHHHHhccCC-
Confidence 9999999887432 356677777654 344578999999988642 1 345777899999999
Q ss_pred cEEEEE
Q psy19 424 GRAILL 429 (494)
Q Consensus 424 G~lvll 429 (494)
|++++.
T Consensus 176 G~lvI~ 181 (233)
T 4df3_A 176 GYMLMA 181 (233)
T ss_dssp EEEEEE
T ss_pred CEEEEE
Confidence 998875
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.37 E-value=4.3e-12 Score=119.99 Aligned_cols=109 Identities=20% Similarity=0.221 Sum_probs=89.3
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
.++.+|||+|||+|.++..++..++ .++|+|+++.+++.|++|+...+ .++.+.++|+.++++++++||+|+
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~~~~~~~~~D~v~ 108 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRE------SNVEFIVGDARKLSFEDKTFDYVI 108 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT------CCCEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC------CCceEEECchhcCCCCCCcEEEEE
Confidence 4578999999999999999888754 89999999999999999998654 246899999998877667999999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
+++|+... .. .-...+++++.++|+|| |++++..++.
T Consensus 109 ~~~~~~~~--~~----~~~~~~l~~~~~~L~~g-G~l~~~~~~~ 145 (227)
T 1ve3_A 109 FIDSIVHF--EP----LELNQVFKEVRRVLKPS-GKFIMYFTDL 145 (227)
T ss_dssp EESCGGGC--CH----HHHHHHHHHHHHHEEEE-EEEEEEEECH
T ss_pred EcCchHhC--CH----HHHHHHHHHHHHHcCCC-cEEEEEecCh
Confidence 99983321 11 11356778899999999 9999988874
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.5e-12 Score=126.75 Aligned_cols=113 Identities=11% Similarity=-0.027 Sum_probs=92.9
Q ss_pred hCCCCCCEEEEEcCCcChHHHHHH-hcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCe
Q psy19 307 ASPIPGDVFLDPMCGGGTIPVECS-LSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACV 385 (494)
Q Consensus 307 a~~~~g~~VLDP~CGSGtilIEAA-~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~ 385 (494)
....++.+|||+|||+|.+++.+| ...++..++|+|+++.+++.|++|+..+++ ..++.++++|+.+++++ ++|
T Consensus 114 ~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~-~~f 188 (305)
T 3ocj_A 114 RHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHAL----AGQITLHRQDAWKLDTR-EGY 188 (305)
T ss_dssp HHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTT----GGGEEEEECCGGGCCCC-SCE
T ss_pred hhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCC----CCceEEEECchhcCCcc-CCe
Confidence 345688999999999999999875 456788999999999999999999987654 45689999999999877 899
Q ss_pred eEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 386 DGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 386 D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
|+|+++.++..- .. ...+..+++++.++|+|| |++++..
T Consensus 189 D~v~~~~~~~~~-~~----~~~~~~~l~~~~~~Lkpg-G~l~i~~ 227 (305)
T 3ocj_A 189 DLLTSNGLNIYE-PD----DARVTELYRRFWQALKPG-GALVTSF 227 (305)
T ss_dssp EEEECCSSGGGC-CC----HHHHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred EEEEECChhhhc-CC----HHHHHHHHHHHHHhcCCC-eEEEEEe
Confidence 999999876532 22 223456788999999999 9988765
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=7.3e-12 Score=125.65 Aligned_cols=117 Identities=11% Similarity=-0.074 Sum_probs=92.3
Q ss_pred HHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccc
Q psy19 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVR 376 (494)
Q Consensus 297 e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~ 376 (494)
..++.....+++.+++.+|||+|||+|.+....+...++++|+|+|+++.+++.|++|+...|+ .+++++++|+.
T Consensus 108 ~~l~~~E~~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-----~~v~~v~gDa~ 182 (298)
T 3fpf_A 108 LELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-----DGVNVITGDET 182 (298)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-----CSEEEEESCGG
T ss_pred HHHHHHHHHHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-----CCeEEEECchh
Confidence 3445555568899999999999999997753333344689999999999999999999998764 46799999999
Q ss_pred cccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 377 QLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 377 ~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+++ +++||+|+++-- ..+ +..+++++.++|||| |++++....
T Consensus 183 ~l~--d~~FDvV~~~a~-------~~d----~~~~l~el~r~LkPG-G~Lvv~~~~ 224 (298)
T 3fpf_A 183 VID--GLEFDVLMVAAL-------AEP----KRRVFRNIHRYVDTE-TRIIYRTYT 224 (298)
T ss_dssp GGG--GCCCSEEEECTT-------CSC----HHHHHHHHHHHCCTT-CEEEEEECC
T ss_pred hCC--CCCcCEEEECCC-------ccC----HHHHHHHHHHHcCCC-cEEEEEcCc
Confidence 876 578999998421 122 456777899999999 999987764
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.1e-12 Score=122.06 Aligned_cols=114 Identities=9% Similarity=0.036 Sum_probs=90.3
Q ss_pred HHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcc-cceeeeeeccc
Q psy19 299 IAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRE-LKVSPLVCNVR 376 (494)
Q Consensus 299 lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~-~~i~~~~~Da~ 376 (494)
+...++...+.+++.+|||+|||+|..++.+|...+ +..++++|+++.+++.|++|+..+|+ . .++.++++|+.
T Consensus 44 ~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~----~~~~i~~~~gda~ 119 (221)
T 3dr5_A 44 LLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGY----SPSRVRFLLSRPL 119 (221)
T ss_dssp HHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTC----CGGGEEEECSCHH
T ss_pred HHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CcCcEEEEEcCHH
Confidence 334444444555556999999999999999888654 78999999999999999999998765 3 57899999998
Q ss_pred ccc--CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 377 QLC--FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 377 ~l~--~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
+.. +.+++||+|++|.+.. . |..+++.+.++|+|| |.+++
T Consensus 120 ~~l~~~~~~~fD~V~~d~~~~-------~----~~~~l~~~~~~LkpG-G~lv~ 161 (221)
T 3dr5_A 120 DVMSRLANDSYQLVFGQVSPM-------D----LKALVDAAWPLLRRG-GALVL 161 (221)
T ss_dssp HHGGGSCTTCEEEEEECCCTT-------T----HHHHHHHHHHHEEEE-EEEEE
T ss_pred HHHHHhcCCCcCeEEEcCcHH-------H----HHHHHHHHHHHcCCC-cEEEE
Confidence 762 3357899999997532 1 556777899999999 98776
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-12 Score=124.83 Aligned_cols=119 Identities=18% Similarity=0.127 Sum_probs=98.5
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
+.+..+..+..++...++.+|||+|||+|.+++.++...|+..++|+|+++.+++.|++|+..+++ ..++.+.++|
T Consensus 38 ~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~~~d 113 (233)
T 2gpy_A 38 MDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGL----ESRIELLFGD 113 (233)
T ss_dssp CCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTC----TTTEEEECSC
T ss_pred cCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECC
Confidence 566777777777766678899999999999999999888788999999999999999999998764 3457899999
Q ss_pred cccc-cCC--CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 375 VRQL-CFK--PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 375 a~~l-~~~--~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+... +.. ++.||+|++|+|.. .+..+++.+.++|+|| |++++.
T Consensus 114 ~~~~~~~~~~~~~fD~I~~~~~~~-----------~~~~~l~~~~~~L~pg-G~lv~~ 159 (233)
T 2gpy_A 114 ALQLGEKLELYPLFDVLFIDAAKG-----------QYRRFFDMYSPMVRPG-GLILSD 159 (233)
T ss_dssp GGGSHHHHTTSCCEEEEEEEGGGS-----------CHHHHHHHHGGGEEEE-EEEEEE
T ss_pred HHHHHHhcccCCCccEEEECCCHH-----------HHHHHHHHHHHHcCCC-eEEEEE
Confidence 9874 322 46899999998743 1557778899999999 988775
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.36 E-value=7.1e-12 Score=117.73 Aligned_cols=116 Identities=14% Similarity=0.046 Sum_probs=96.9
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
..+.+.+.++......++.+|||+|||+|.+++.++.. +..++|+|+++.+++.|++|+..+++ .++.+.++|
T Consensus 61 ~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~v~~~~~d 133 (210)
T 3lbf_A 61 SQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDL-----HNVSTRHGD 133 (210)
T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEESC
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCC-----CceEEEECC
Confidence 46778888888888899999999999999999999887 68999999999999999999998764 247899999
Q ss_pred cccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 375 VRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 375 a~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+.......++||+|+++.++.. +. ..+.++|+|| |++++..+.
T Consensus 134 ~~~~~~~~~~~D~i~~~~~~~~-~~-------------~~~~~~L~pg-G~lv~~~~~ 176 (210)
T 3lbf_A 134 GWQGWQARAPFDAIIVTAAPPE-IP-------------TALMTQLDEG-GILVLPVGE 176 (210)
T ss_dssp GGGCCGGGCCEEEEEESSBCSS-CC-------------THHHHTEEEE-EEEEEEECS
T ss_pred cccCCccCCCccEEEEccchhh-hh-------------HHHHHhcccC-cEEEEEEcC
Confidence 9886555578999999865432 11 1377899999 999998877
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=9.8e-12 Score=121.62 Aligned_cols=115 Identities=20% Similarity=0.165 Sum_probs=91.7
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEE
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGI 388 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~I 388 (494)
..++.+|||+|||+|.+++.++..+ ..++|+|+|+.+++.|++|+..+++ . +.+.++|+... ++.++||+|
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~g--~~v~gvDi~~~~v~~a~~n~~~~~~----~--v~~~~~d~~~~-~~~~~fD~V 188 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKLG--GKALGVDIDPMVLPQAEANAKRNGV----R--PRFLEGSLEAA-LPFGPFDLL 188 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCGGGHHHHHHHHHHTTC----C--CEEEESCHHHH-GGGCCEEEE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCC----c--EEEEECChhhc-CcCCCCCEE
Confidence 4678899999999999999988874 4999999999999999999998764 1 57888898763 334689999
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe---cCHHHHHHHHHhcc
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT---SDRKHLIQALHITS 444 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt---~~~~~l~~~l~~~~ 444 (494)
++|+++. .+..++..+.++|+|| |++++.. .....+.+.+...|
T Consensus 189 v~n~~~~-----------~~~~~l~~~~~~Lkpg-G~lils~~~~~~~~~v~~~l~~~G 235 (254)
T 2nxc_A 189 VANLYAE-----------LHAALAPRYREALVPG-GRALLTGILKDRAPLVREAMAGAG 235 (254)
T ss_dssp EEECCHH-----------HHHHHHHHHHHHEEEE-EEEEEEEEEGGGHHHHHHHHHHTT
T ss_pred EECCcHH-----------HHHHHHHHHHHHcCCC-CEEEEEeeccCCHHHHHHHHHHCC
Confidence 9998642 2456778899999999 9988743 23445666777665
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.35 E-value=7.1e-12 Score=124.17 Aligned_cols=121 Identities=10% Similarity=-0.022 Sum_probs=97.4
Q ss_pred HHHHHHHHHHh----CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 297 PTIAYNMVRLA----SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 297 e~lAa~ll~la----~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
...+..++... ...++.+|||+|||+|.++..++... +..++|+|+++.+++.|++++...++ ..++.+.+
T Consensus 64 ~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~~~~~~ 138 (297)
T 2o57_A 64 LRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGL----ADNITVKY 138 (297)
T ss_dssp HHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTC----TTTEEEEE
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCC----CcceEEEE
Confidence 33445566666 77888999999999999999988764 46999999999999999999987764 35678999
Q ss_pred eccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 373 CNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 373 ~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+|+.++|+++++||+|+++-.+.. +. + ...+++++.++|+|| |++++..+
T Consensus 139 ~d~~~~~~~~~~fD~v~~~~~l~~-~~---~----~~~~l~~~~~~Lkpg-G~l~~~~~ 188 (297)
T 2o57_A 139 GSFLEIPCEDNSYDFIWSQDAFLH-SP---D----KLKVFQECARVLKPR-GVMAITDP 188 (297)
T ss_dssp CCTTSCSSCTTCEEEEEEESCGGG-CS---C----HHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred cCcccCCCCCCCEeEEEecchhhh-cC---C----HHHHHHHHHHHcCCC-eEEEEEEe
Confidence 999999888789999999754331 11 2 356778999999999 99988754
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.8e-12 Score=123.30 Aligned_cols=111 Identities=13% Similarity=0.093 Sum_probs=86.0
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc--cCCCCCee
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL--CFKPACVD 386 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l--~~~~~~~D 386 (494)
..++.+|||+|||+|.+++.++... ...++|+|+++.+++.|++++...+ .++.++++|+.++ ++++++||
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~------~~v~~~~~d~~~~~~~~~~~~fD 130 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQT------HKVIPLKGLWEDVAPTLPDGHFD 130 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGGCS------SEEEEEESCHHHHGGGSCTTCEE
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcC-CCeEEEEcCCHHHHHHHHHHHHhcC------CCeEEEecCHHHhhcccCCCceE
Confidence 4578899999999999999887643 3489999999999999999987553 3578999999988 78778999
Q ss_pred EEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 387 GIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 387 ~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+|++| .|....... ....+..+++++.++|||| |+++++.
T Consensus 131 ~V~~d-~~~~~~~~~--~~~~~~~~l~~~~r~Lkpg-G~l~~~~ 170 (236)
T 1zx0_A 131 GILYD-TYPLSEETW--HTHQFNFIKNHAFRLLKPG-GVLTYCN 170 (236)
T ss_dssp EEEEC-CCCCBGGGT--TTHHHHHHHHTHHHHEEEE-EEEEECC
T ss_pred EEEEC-Ccccchhhh--hhhhHHHHHHHHHHhcCCC-eEEEEEe
Confidence 99996 333211111 1233556788999999999 9987754
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.35 E-value=3.7e-12 Score=120.22 Aligned_cols=127 Identities=10% Similarity=0.084 Sum_probs=91.2
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccC-----C--CCcccc
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSG-----N--LNRELK 367 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~-----~--~~~~~~ 367 (494)
.++.+...+ ......++.+|||+|||+|..+..+|.. +..|+|+|+++.|++.|+++...... + .....+
T Consensus 7 ~~~~l~~~~-~~l~~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 83 (203)
T 1pjz_A 7 VNKDLQQYW-SSLNVVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPG 83 (203)
T ss_dssp STHHHHHHH-HHHCCCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSS
T ss_pred CCHHHHHHH-HhcccCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCc
Confidence 344555443 3335567889999999999999999887 67999999999999999988753100 0 000135
Q ss_pred eeeeeeccccccCCC-CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 368 VSPLVCNVRQLCFKP-ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 368 i~~~~~Da~~l~~~~-~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+.+.++|+.++++.+ ++||+|++.-.+.. +. ......+++++.++|||| |++++++.
T Consensus 84 v~~~~~d~~~l~~~~~~~fD~v~~~~~l~~-l~-----~~~~~~~l~~~~r~Lkpg-G~~~l~~~ 141 (203)
T 1pjz_A 84 IEIWCGDFFALTARDIGHCAAFYDRAAMIA-LP-----ADMRERYVQHLEALMPQA-CSGLLITL 141 (203)
T ss_dssp SEEEEECCSSSTHHHHHSEEEEEEESCGGG-SC-----HHHHHHHHHHHHHHSCSE-EEEEEEEE
T ss_pred cEEEECccccCCcccCCCEEEEEECcchhh-CC-----HHHHHHHHHHHHHHcCCC-cEEEEEEE
Confidence 789999999987654 68999998654431 11 122446788999999999 99666553
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-11 Score=123.49 Aligned_cols=121 Identities=18% Similarity=0.181 Sum_probs=95.3
Q ss_pred HHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC
Q psy19 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380 (494)
Q Consensus 301 a~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~ 380 (494)
..++......++.+|||+|||+|.+++.++..++ ..++|+|+++.+++.|++++...++ ..++.+..+|+.++
T Consensus 62 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~-- 134 (302)
T 3hem_A 62 KLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDS----PRRKEVRIQGWEEF-- 134 (302)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCC----SSCEEEEECCGGGC--
T ss_pred HHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEECCHHHc--
Confidence 3455666778899999999999999999988754 7999999999999999999998764 45678999999876
Q ss_pred CCCCeeEEEEcCCCccccCCccc--hHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 381 KPACVDGIVTDLPFGKRVGSKSN--NFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~r~~~~~~--~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+++||+|+++..+.. +..... ....+..+++++.++|+|| |++++.+.
T Consensus 135 -~~~fD~v~~~~~~~~-~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 184 (302)
T 3hem_A 135 -DEPVDRIVSLGAFEH-FADGAGDAGFERYDTFFKKFYNLTPDD-GRMLLHTI 184 (302)
T ss_dssp -CCCCSEEEEESCGGG-TTCCSSCCCTTHHHHHHHHHHHSSCTT-CEEEEEEE
T ss_pred -CCCccEEEEcchHHh-cCccccccchhHHHHHHHHHHHhcCCC-cEEEEEEE
Confidence 479999999866542 211100 1133667888999999999 99988544
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=6.4e-12 Score=123.25 Aligned_cols=127 Identities=12% Similarity=0.014 Sum_probs=91.8
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhc-------cCC-C----
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN-------SGN-L---- 362 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~-------g~~-~---- 362 (494)
..+.+...+..+....++.+|||+|||+|..++.+|.. +..|+|+|+++.|++.|+++.... ... .
T Consensus 52 ~~~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~ 129 (252)
T 2gb4_A 52 GHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFK 129 (252)
T ss_dssp CCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEE
T ss_pred CCHHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccc
Confidence 45556555555555557889999999999999999987 679999999999999998765310 000 0
Q ss_pred CcccceeeeeeccccccCCC-CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 363 NRELKVSPLVCNVRQLCFKP-ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 363 ~~~~~i~~~~~Da~~l~~~~-~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
....++.+.++|+.++++.+ ++||+|+++-.+.. +. ..+ ...+++++.++|||| |++++++
T Consensus 130 ~~~~~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~-l~-~~~----~~~~l~~~~~~LkpG-G~l~l~~ 191 (252)
T 2gb4_A 130 SSSGSISLYCCSIFDLPRANIGKFDRIWDRGALVA-IN-PGD----HDRYADIILSLLRKE-FQYLVAV 191 (252)
T ss_dssp ETTSSEEEEESCTTTGGGGCCCCEEEEEESSSTTT-SC-GGG----HHHHHHHHHHTEEEE-EEEEEEE
T ss_pred cCCCceEEEECccccCCcccCCCEEEEEEhhhhhh-CC-HHH----HHHHHHHHHHHcCCC-eEEEEEE
Confidence 01245789999999997653 79999998754432 21 111 345677899999999 9987654
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.4e-11 Score=113.07 Aligned_cols=146 Identities=13% Similarity=-0.009 Sum_probs=105.6
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeE
Q psy19 308 SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG 387 (494)
Q Consensus 308 ~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~ 387 (494)
...++.+|||+|||+|.++..++.. +..++|+|+++.+++.|+.++. +.+..+|+..++ .+++||+
T Consensus 40 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~-----------~~~~~~d~~~~~-~~~~fD~ 105 (211)
T 3e23_A 40 ELPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLG-----------RPVRTMLFHQLD-AIDAYDA 105 (211)
T ss_dssp TSCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHT-----------SCCEECCGGGCC-CCSCEEE
T ss_pred hcCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcC-----------CceEEeeeccCC-CCCcEEE
Confidence 3457889999999999999999887 6799999999999999999872 257788998887 5679999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec-----------------CHHHHHHHHHhcc-cccee
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS-----------------DRKHLIQALHITS-ALWKC 449 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~-----------------~~~~l~~~l~~~~-~l~~~ 449 (494)
|+++..+.. +. ..-...+++++.++|+|| |++++.++ +...+...+...| . ..
T Consensus 106 v~~~~~l~~-~~-----~~~~~~~l~~~~~~Lkpg-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f--~~ 176 (211)
T 3e23_A 106 VWAHACLLH-VP-----RDELADVLKLIWRALKPG-GLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTW--AS 176 (211)
T ss_dssp EEECSCGGG-SC-----HHHHHHHHHHHHHHEEEE-EEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCC--SE
T ss_pred EEecCchhh-cC-----HHHHHHHHHHHHHhcCCC-cEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCc--EE
Confidence 999875432 11 122457788999999999 99888644 3445777777766 4 23
Q ss_pred eeeEEE----ccCCceEEEEEEeeCCCCCCC
Q psy19 450 RKQIKI----NMSGMKSFVFILNRTADLFDY 476 (494)
Q Consensus 450 ~~~~~v----~~Ggl~~~i~v~~~~~~~~d~ 476 (494)
...... ..+.....+.++.+..+.+.|
T Consensus 177 ~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~ 207 (211)
T 3e23_A 177 VAVESSEGKGFDQELAQFLHVSVRKPELEHH 207 (211)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEECCCC---
T ss_pred EEEEeccCCCCCCCCceEEEEEEecCccccc
Confidence 222222 234446677777777766655
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-12 Score=123.18 Aligned_cols=120 Identities=17% Similarity=0.100 Sum_probs=95.3
Q ss_pred cchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
.+.+..+..+..++...++.+|||+|||+|.+++.+|...+ +..++|+|+++.+++.|++|+..+++ ..++.+++
T Consensus 47 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~~ 122 (225)
T 3tr6_A 47 QTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGL----SDKIGLRL 122 (225)
T ss_dssp SCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEE
T ss_pred ccCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC----CCceEEEe
Confidence 35566666666666556778999999999999999998776 78999999999999999999998765 45678999
Q ss_pred eccccc-c-CCC----CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 373 CNVRQL-C-FKP----ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 373 ~Da~~l-~-~~~----~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+|+.+. + +.. ++||+|++|+|.. . |..+++.+.++|+|| |.+++-
T Consensus 123 ~d~~~~~~~~~~~~~~~~fD~v~~~~~~~-------~----~~~~l~~~~~~L~pg-G~lv~~ 173 (225)
T 3tr6_A 123 SPAKDTLAELIHAGQAWQYDLIYIDADKA-------N----TDLYYEESLKLLREG-GLIAVD 173 (225)
T ss_dssp SCHHHHHHHHHTTTCTTCEEEEEECSCGG-------G----HHHHHHHHHHHEEEE-EEEEEE
T ss_pred CCHHHHHHHhhhccCCCCccEEEECCCHH-------H----HHHHHHHHHHhcCCC-cEEEEe
Confidence 998664 2 111 6899999998721 1 556777899999999 988773
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-11 Score=119.19 Aligned_cols=122 Identities=16% Similarity=0.172 Sum_probs=95.0
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
.++.+|||+|||+|.+++.++... ...++|+|+++.+++.|++++...+ ..++.+.++|+..+++.+++||+|+
T Consensus 78 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~fD~v~ 151 (241)
T 2ex4_A 78 TGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEG-----KRVRNYFCCGLQDFTPEPDSYDVIW 151 (241)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGG-----GGEEEEEECCGGGCCCCSSCEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcC-----CceEEEEEcChhhcCCCCCCEEEEE
Confidence 357899999999999999877765 4689999999999999999987653 2356899999998887767899999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec-----------------CHHHHHHHHHhcc
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS-----------------DRKHLIQALHITS 444 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~-----------------~~~~l~~~l~~~~ 444 (494)
++-.+.. +. ...+..+++++.++|+|| |++++..+ ....+.+.+.+.|
T Consensus 152 ~~~~l~~-~~-----~~~~~~~l~~~~~~Lkpg-G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 216 (241)
T 2ex4_A 152 IQWVIGH-LT-----DQHLAEFLRRCKGSLRPN-GIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAG 216 (241)
T ss_dssp EESCGGG-SC-----HHHHHHHHHHHHHHEEEE-EEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTT
T ss_pred Ecchhhh-CC-----HHHHHHHHHHHHHhcCCC-eEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcC
Confidence 9854321 11 123567888999999999 99988543 3455777777766
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=5.6e-12 Score=128.81 Aligned_cols=117 Identities=15% Similarity=0.134 Sum_probs=93.5
Q ss_pred HHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc
Q psy19 298 TIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ 377 (494)
Q Consensus 298 ~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~ 377 (494)
.+..++.......++.+|||+|||+|.+++.++... ...++|+|+++ +++.|++|++.+++ ..++.++++|+.+
T Consensus 51 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~v~gvD~s~-~~~~a~~~~~~~~~----~~~i~~~~~d~~~ 124 (340)
T 2fyt_A 51 SYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSE-ILYQAMDIIRLNKL----EDTITLIKGKIEE 124 (340)
T ss_dssp HHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEESST-HHHHHHHHHHHTTC----TTTEEEEESCTTT
T ss_pred HHHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcC-CCEEEEEChHH-HHHHHHHHHHHcCC----CCcEEEEEeeHHH
Confidence 344566666666788899999999999999998872 35899999997 99999999998764 4568999999999
Q ss_pred ccCCCCCeeEEEEcC-CCccccCCccchHHHHHHHHHHHhhcccCCCcEEE
Q psy19 378 LCFKPACVDGIVTDL-PFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAI 427 (494)
Q Consensus 378 l~~~~~~~D~IVtNP-PYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lv 427 (494)
+++++++||+|++++ +|..... . ....++.++.++|+|| |+++
T Consensus 125 ~~~~~~~~D~Ivs~~~~~~l~~~--~----~~~~~l~~~~~~Lkpg-G~li 168 (340)
T 2fyt_A 125 VHLPVEKVDVIISEWMGYFLLFE--S----MLDSVLYAKNKYLAKG-GSVY 168 (340)
T ss_dssp SCCSCSCEEEEEECCCBTTBTTT--C----HHHHHHHHHHHHEEEE-EEEE
T ss_pred hcCCCCcEEEEEEcCchhhccCH--H----HHHHHHHHHHhhcCCC-cEEE
Confidence 887767999999998 6654321 1 2446777899999999 9876
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.2e-12 Score=121.38 Aligned_cols=119 Identities=15% Similarity=-0.039 Sum_probs=95.4
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
+.+..+..+..++...++.+|||+|||+|..++.+|...+ +..++|+|+++.+++.|++|+..+++ ..++.++++
T Consensus 42 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~~~ 117 (223)
T 3duw_A 42 VSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANL----NDRVEVRTG 117 (223)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEES
T ss_pred cCHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEc
Confidence 4566666666666666788999999999999999998877 78999999999999999999998765 456889999
Q ss_pred ccccc-c-CC---CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 374 NVRQL-C-FK---PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 374 Da~~l-~-~~---~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
|+.+. + +. .++||+|++|++.. .|..+++.+.++|+|| |.+++-
T Consensus 118 d~~~~~~~~~~~~~~~fD~v~~d~~~~-----------~~~~~l~~~~~~L~pg-G~lv~~ 166 (223)
T 3duw_A 118 LALDSLQQIENEKYEPFDFIFIDADKQ-----------NNPAYFEWALKLSRPG-TVIIGD 166 (223)
T ss_dssp CHHHHHHHHHHTTCCCCSEEEECSCGG-----------GHHHHHHHHHHTCCTT-CEEEEE
T ss_pred CHHHHHHHHHhcCCCCcCEEEEcCCcH-----------HHHHHHHHHHHhcCCC-cEEEEe
Confidence 99764 1 11 15799999998722 2557777899999999 977663
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.6e-11 Score=111.37 Aligned_cols=121 Identities=16% Similarity=0.090 Sum_probs=93.8
Q ss_pred CCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEEc
Q psy19 312 GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTD 391 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtN 391 (494)
+.+|||+|||+|.++..++.. +..++|+|+++.+++.|+++.. .+.++++|+.++++++++||+|+++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~----------~~~~~~~d~~~~~~~~~~fD~v~~~ 109 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHP----------SVTFHHGTITDLSDSPKRWAGLLAW 109 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCT----------TSEEECCCGGGGGGSCCCEEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCC----------CCeEEeCcccccccCCCCeEEEEeh
Confidence 678999999999999998887 6799999999999999998832 3578999999998777899999997
Q ss_pred CCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec------------------CHHHHHHHHHhccccceeeeeE
Q psy19 392 LPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS------------------DRKHLIQALHITSALWKCRKQI 453 (494)
Q Consensus 392 PPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~------------------~~~~l~~~l~~~~~l~~~~~~~ 453 (494)
..+..- . ..+ ...+++++.++|+|| |++++.+. ....+.+.+...| +......
T Consensus 110 ~~l~~~-~-~~~----~~~~l~~~~~~L~pg-G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G--f~~~~~~ 180 (203)
T 3h2b_A 110 YSLIHM-G-PGE----LPDALVALRMAVEDG-GGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAG--FQVTSSH 180 (203)
T ss_dssp SSSTTC-C-TTT----HHHHHHHHHHTEEEE-EEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTT--EEEEEEE
T ss_pred hhHhcC-C-HHH----HHHHHHHHHHHcCCC-cEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCC--CcEEEEE
Confidence 654321 1 112 446777899999999 99988653 2455777777766 4544433
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=5.6e-12 Score=124.48 Aligned_cols=136 Identities=15% Similarity=0.085 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccc
Q psy19 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVR 376 (494)
Q Consensus 297 e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~ 376 (494)
+.+...++.+....++.+|||+|||+|.+++.++.. +..++|+|+++.+++.|++|+...+... ....+.+..+|+.
T Consensus 43 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~d~~ 119 (293)
T 3thr_A 43 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEP-AFDKWVIEEANWL 119 (293)
T ss_dssp HHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSH-HHHTCEEEECCGG
T ss_pred HHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhccccc-ccceeeEeecChh
Confidence 445555666665567889999999999999999887 5699999999999999999986543211 1134578889998
Q ss_pred ccc---CCCCCeeEEEEc-CCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHH
Q psy19 377 QLC---FKPACVDGIVTD-LPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLI 437 (494)
Q Consensus 377 ~l~---~~~~~~D~IVtN-PPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~ 437 (494)
.++ +.+++||+|+++ ..+.. +............+++++.++|+|| |++++.+++...+.
T Consensus 120 ~~~~~~~~~~~fD~V~~~g~~l~~-~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~~~~~~ 182 (293)
T 3thr_A 120 TLDKDVPAGDGFDAVICLGNSFAH-LPDSKGDQSEHRLALKNIASMVRPG-GLLVIDHRNYDYIL 182 (293)
T ss_dssp GHHHHSCCTTCEEEEEECTTCGGG-SCCSSSSSHHHHHHHHHHHHTEEEE-EEEEEEEECHHHHH
T ss_pred hCccccccCCCeEEEEEcChHHhh-cCccccCHHHHHHHHHHHHHHcCCC-eEEEEEeCCHHHHh
Confidence 887 677899999997 33332 2210000122456777999999999 99999999876443
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.6e-12 Score=123.38 Aligned_cols=119 Identities=13% Similarity=-0.015 Sum_probs=94.4
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
+.+..+..+..++...++.+|||+|||+|..++.+|...+ +..++|+|+++.+++.|++|+..+|+ ..++.+..+
T Consensus 47 ~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~----~~~v~~~~~ 122 (248)
T 3tfw_A 47 VAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGV----DQRVTLREG 122 (248)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTC----TTTEEEEES
T ss_pred cCHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEc
Confidence 3455555555555556778999999999999999998876 78999999999999999999998765 456899999
Q ss_pred ccccc-cCC--CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 374 NVRQL-CFK--PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 374 Da~~l-~~~--~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
|+.+. +.. .++||+|++|.+.. . |..+++.+.++|+|| |.+++-
T Consensus 123 d~~~~l~~~~~~~~fD~V~~d~~~~-------~----~~~~l~~~~~~LkpG-G~lv~~ 169 (248)
T 3tfw_A 123 PALQSLESLGECPAFDLIFIDADKP-------N----NPHYLRWALRYSRPG-TLIIGD 169 (248)
T ss_dssp CHHHHHHTCCSCCCCSEEEECSCGG-------G----HHHHHHHHHHTCCTT-CEEEEE
T ss_pred CHHHHHHhcCCCCCeEEEEECCchH-------H----HHHHHHHHHHhcCCC-eEEEEe
Confidence 99774 322 24899999987521 1 456777899999999 987764
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.2e-12 Score=119.97 Aligned_cols=120 Identities=19% Similarity=0.139 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhC-CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecc
Q psy19 297 PTIAYNMVRLAS-PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNV 375 (494)
Q Consensus 297 e~lAa~ll~la~-~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da 375 (494)
..+...++.+.. ..++.+|||+|||+|.++..++..+|+..++|+|+++.+++.|++++...+ ++.++++|+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~d~ 101 (234)
T 3dtn_A 29 DDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL-------KVKYIEADY 101 (234)
T ss_dssp HHHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT-------TEEEEESCT
T ss_pred HHHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC-------CEEEEeCch
Confidence 344455555554 567889999999999999999998888999999999999999999986432 578999999
Q ss_pred ccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 376 RQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 376 ~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
.++++. ++||+|+++.++..- . . .-...+++++.++|+|| |++++...
T Consensus 102 ~~~~~~-~~fD~v~~~~~l~~~-~-~----~~~~~~l~~~~~~Lkpg-G~l~~~~~ 149 (234)
T 3dtn_A 102 SKYDFE-EKYDMVVSALSIHHL-E-D----EDKKELYKRSYSILKES-GIFINADL 149 (234)
T ss_dssp TTCCCC-SCEEEEEEESCGGGS-C-H----HHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred hccCCC-CCceEEEEeCccccC-C-H----HHHHHHHHHHHHhcCCC-cEEEEEEe
Confidence 998876 799999998765422 1 1 11335777899999999 99988763
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-11 Score=117.89 Aligned_cols=114 Identities=18% Similarity=0.150 Sum_probs=93.0
Q ss_pred HHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC
Q psy19 302 NMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK 381 (494)
Q Consensus 302 ~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~ 381 (494)
-++.+..+.++.+|||+|||+|.++..++.. +..++|+|+++.+++.|++++...++ .++.+.++|+..++++
T Consensus 12 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~v~~~~~d~~~~~~~ 84 (239)
T 1xxl_A 12 LMIKTAECRAEHRVLDIGAGAGHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKGV-----ENVRFQQGTAESLPFP 84 (239)
T ss_dssp HHHHHHTCCTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHHTC-----CSEEEEECBTTBCCSC
T ss_pred hHHHHhCcCCCCEEEEEccCcCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCC-----CCeEEEecccccCCCC
Confidence 3456667789999999999999999998887 45899999999999999999987764 2478999999998887
Q ss_pred CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 382 PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 382 ~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+++||+|+++-.... + .+ ...++.++.++|+|| |++++...
T Consensus 85 ~~~fD~v~~~~~l~~-~---~~----~~~~l~~~~~~Lkpg-G~l~~~~~ 125 (239)
T 1xxl_A 85 DDSFDIITCRYAAHH-F---SD----VRKAVREVARVLKQD-GRFLLVDH 125 (239)
T ss_dssp TTCEEEEEEESCGGG-C---SC----HHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred CCcEEEEEECCchhh-c---cC----HHHHHHHHHHHcCCC-cEEEEEEc
Confidence 789999999854331 1 12 346777899999999 99988643
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=9.7e-12 Score=117.13 Aligned_cols=120 Identities=12% Similarity=0.042 Sum_probs=95.1
Q ss_pred HHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc
Q psy19 298 TIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ 377 (494)
Q Consensus 298 ~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~ 377 (494)
.++..+..+....++.+|||+|||+|.++..++.. +..++|+|+++.+++.|++++... .++.+.++|+.+
T Consensus 38 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~d~~~ 108 (216)
T 3ofk_A 38 RHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH--CKRLTVIDVMPRAIGRACQRTKRW-------SHISWAATDILQ 108 (216)
T ss_dssp HHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGG--EEEEEEEESCHHHHHHHHHHTTTC-------SSEEEEECCTTT
T ss_pred HHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcccC-------CCeEEEEcchhh
Confidence 55555666667778889999999999999998887 468999999999999999998743 257899999999
Q ss_pred ccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 378 LCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 378 l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
++ ++++||+|+++..+.. +.. ...+..++.++.++|+|| |.+++.++..
T Consensus 109 ~~-~~~~fD~v~~~~~l~~-~~~----~~~~~~~l~~~~~~L~pg-G~l~~~~~~~ 157 (216)
T 3ofk_A 109 FS-TAELFDLIVVAEVLYY-LED----MTQMRTAIDNMVKMLAPG-GHLVFGSARD 157 (216)
T ss_dssp CC-CSCCEEEEEEESCGGG-SSS----HHHHHHHHHHHHHTEEEE-EEEEEEEECH
T ss_pred CC-CCCCccEEEEccHHHh-CCC----HHHHHHHHHHHHHHcCCC-CEEEEEecCC
Confidence 87 4579999999865442 221 123456788999999999 9999877544
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.32 E-value=8.4e-12 Score=123.08 Aligned_cols=105 Identities=15% Similarity=0.114 Sum_probs=87.5
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt 390 (494)
++.+|||+|||+|.+++.++.. +..++|+|+++.+++.|++++..+++ ++.+.++|+..+++ +++||+|++
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~d~~~~~~-~~~fD~i~~ 190 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENL------NISTALYDINAANI-QENYDFIVS 190 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC------CEEEEECCGGGCCC-CSCEEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCC------ceEEEEeccccccc-cCCccEEEE
Confidence 6789999999999999999887 67999999999999999999997753 46899999999876 579999999
Q ss_pred cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
++++..- . ... ...+++++.++|+|| |.+++++.
T Consensus 191 ~~~~~~~-~-~~~----~~~~l~~~~~~Lkpg-G~l~i~~~ 224 (286)
T 3m70_A 191 TVVFMFL-N-RER----VPSIIKNMKEHTNVG-GYNLIVAA 224 (286)
T ss_dssp CSSGGGS-C-GGG----HHHHHHHHHHTEEEE-EEEEEEEE
T ss_pred ccchhhC-C-HHH----HHHHHHHHHHhcCCC-cEEEEEEe
Confidence 9987522 1 122 446777899999999 99877653
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=6.3e-12 Score=121.58 Aligned_cols=122 Identities=14% Similarity=0.011 Sum_probs=98.2
Q ss_pred cchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
+....++..++......++.+|||+|||+|.+++.++..+ +..++|+|+++.+++.|++++... .++.+.++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~ 109 (266)
T 3ujc_A 38 SGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGN-------NKIIFEAN 109 (266)
T ss_dssp TTHHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSC-------TTEEEEEC
T ss_pred cchHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcC-------CCeEEEEC
Confidence 3445566777777778889999999999999999998865 679999999999999999987632 45789999
Q ss_pred ccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 374 NVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 374 Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
|+..+++++++||+|+++..+.. ++ ..-...+++++.++|+|| |++++..
T Consensus 110 d~~~~~~~~~~fD~v~~~~~l~~-~~-----~~~~~~~l~~~~~~L~pg-G~l~~~~ 159 (266)
T 3ujc_A 110 DILTKEFPENNFDLIYSRDAILA-LS-----LENKNKLFQKCYKWLKPT-GTLLITD 159 (266)
T ss_dssp CTTTCCCCTTCEEEEEEESCGGG-SC-----HHHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred ccccCCCCCCcEEEEeHHHHHHh-cC-----hHHHHHHHHHHHHHcCCC-CEEEEEE
Confidence 99998887789999999765432 11 123567788999999999 9998875
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.32 E-value=9.3e-12 Score=118.52 Aligned_cols=138 Identities=14% Similarity=0.010 Sum_probs=100.5
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
..+.+..+..+..++...++.+|||+|||+|.+++.+|...+ +.+|+|+|+++.+++.|++|+..+++ .++++++
T Consensus 40 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~ 115 (221)
T 3u81_A 40 MNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGL----QDKVTIL 115 (221)
T ss_dssp GGCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC----GGGEEEE
T ss_pred cccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCC----CCceEEE
Confidence 346666777776766666778999999999999999988653 78999999999999999999998865 4568999
Q ss_pred eeccccc-cCCC-----CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe---cCHHHHHHHHHh
Q psy19 372 VCNVRQL-CFKP-----ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT---SDRKHLIQALHI 442 (494)
Q Consensus 372 ~~Da~~l-~~~~-----~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt---~~~~~l~~~l~~ 442 (494)
++|+.+. +... ++||+|++|.+... . .-+..++..+ ++|+|| |.+++-. +....+.+.+..
T Consensus 116 ~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~-------~-~~~~~~~~~~-~~Lkpg-G~lv~~~~~~~~~~~~~~~l~~ 185 (221)
T 3u81_A 116 NGASQDLIPQLKKKYDVDTLDMVFLDHWKDR-------Y-LPDTLLLEKC-GLLRKG-TVLLADNVIVPGTPDFLAYVRG 185 (221)
T ss_dssp ESCHHHHGGGTTTTSCCCCCSEEEECSCGGG-------H-HHHHHHHHHT-TCCCTT-CEEEESCCCCCCCHHHHHHHHH
T ss_pred ECCHHHHHHHHHHhcCCCceEEEEEcCCccc-------c-hHHHHHHHhc-cccCCC-eEEEEeCCCCcchHHHHHHHhh
Confidence 9998664 3211 58999999975321 1 1133456667 999999 9887632 222335555554
Q ss_pred cc
Q psy19 443 TS 444 (494)
Q Consensus 443 ~~ 444 (494)
..
T Consensus 186 ~~ 187 (221)
T 3u81_A 186 SS 187 (221)
T ss_dssp CT
T ss_pred CC
Confidence 43
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-11 Score=122.26 Aligned_cols=119 Identities=13% Similarity=0.118 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 296 KPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 296 ~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
.+.+...+..+.. .++.+|||+|||+|.+++.++..+ ++..++|+|+++.+++.|++++...+ +...++.++++|
T Consensus 22 ~~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~~v~~~~~d 97 (299)
T 3g5t_A 22 PSDFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSP---DTYKNVSFKISS 97 (299)
T ss_dssp CHHHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC----CCTTEEEEECC
T ss_pred CHHHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcc---CCCCceEEEEcC
Confidence 3455555555543 578899999999999999999765 68899999999999999999998751 113467899999
Q ss_pred cccccCCC------CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 375 VRQLCFKP------ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 375 a~~l~~~~------~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
+.++++.. ++||+|+++..+... + ...+++++.++|+|| |.+++
T Consensus 98 ~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-----~----~~~~l~~~~~~Lkpg-G~l~i 147 (299)
T 3g5t_A 98 SDDFKFLGADSVDKQKIDMITAVECAHWF-----D----FEKFQRSAYANLRKD-GTIAI 147 (299)
T ss_dssp TTCCGGGCTTTTTSSCEEEEEEESCGGGS-----C----HHHHHHHHHHHEEEE-EEEEE
T ss_pred HHhCCccccccccCCCeeEEeHhhHHHHh-----C----HHHHHHHHHHhcCCC-cEEEE
Confidence 99987765 799999998764422 2 456777899999999 99887
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.2e-11 Score=123.06 Aligned_cols=121 Identities=12% Similarity=0.002 Sum_probs=93.3
Q ss_pred HHhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCC-
Q psy19 305 RLASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKP- 382 (494)
Q Consensus 305 ~la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~- 382 (494)
.+..+++|.+|||+|||+|+..+.+|.. .+...|+|+|+++.+++.+++|++.+|+ .++.++++|+..++...
T Consensus 96 ~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~-----~~v~~~~~D~~~~~~~~~ 170 (309)
T 2b9e_A 96 MLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-----SCCELAEEDFLAVSPSDP 170 (309)
T ss_dssp HHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEECCGGGSCTTCG
T ss_pred HHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEeCChHhcCcccc
Confidence 3457789999999999999999988865 3457999999999999999999998875 24789999998875321
Q ss_pred --CCeeEEEEcCCCc-ccc--C----------Ccc---chHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 383 --ACVDGIVTDLPFG-KRV--G----------SKS---NNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 383 --~~~D~IVtNPPYG-~r~--~----------~~~---~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
..||.|++|||+. ... . ... .+..+...+|..+.++|+ | |++++.|+.
T Consensus 171 ~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-g-G~lvYsTCs 236 (309)
T 2b9e_A 171 RYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-L-QRLVYSTCS 236 (309)
T ss_dssp GGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-C-CEEEEEESC
T ss_pred ccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-C-CEEEEECCC
Confidence 4799999999982 111 0 011 234556778989999887 8 999987764
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.7e-11 Score=127.66 Aligned_cols=107 Identities=16% Similarity=0.060 Sum_probs=85.6
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCC-CeEEEEeCCHHHHHHHHHHHHhccCCCCcccc-eeeeeecccccc--CCCCCe
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPH-TFFVCGDINEKLVLKTQANVLHNSGNLNRELK-VSPLVCNVRQLC--FKPACV 385 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~-~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~-i~~~~~Da~~l~--~~~~~~ 385 (494)
++|.+|||+|||||.+++++|...++ ..|+++|+++.+++.+++|++.+++ .++ +.++++|+.++. ...+.|
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl----~~~~v~v~~~Da~~~l~~~~~~~f 126 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNI----PEDRYEIHGMEANFFLRKEWGFGF 126 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTC----CGGGEEEECSCHHHHHHSCCSSCE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCC----CCceEEEEeCCHHHHHHHhhCCCC
Confidence 46889999999999999999986444 5899999999999999999999875 344 789999997752 123579
Q ss_pred eEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 386 DGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 386 D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
|+|++|| ||.. ..++..+.+.|++| |.+++.+.+.
T Consensus 127 D~V~lDP-~g~~-----------~~~l~~a~~~Lk~g-Gll~~t~t~~ 161 (392)
T 3axs_A 127 DYVDLDP-FGTP-----------VPFIESVALSMKRG-GILSLTATDT 161 (392)
T ss_dssp EEEEECC-SSCC-----------HHHHHHHHHHEEEE-EEEEEEECCH
T ss_pred cEEEECC-CcCH-----------HHHHHHHHHHhCCC-CEEEEEecch
Confidence 9999998 5421 24666788899998 9777765553
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-11 Score=116.88 Aligned_cols=118 Identities=13% Similarity=0.104 Sum_probs=87.9
Q ss_pred cchHHHHHHHHHH--hCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 294 TLKPTIAYNMVRL--ASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 294 ~L~e~lAa~ll~l--a~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
+.+..+++.++.. ...+++.+|||+|||+|.++..++...+...|+|+|+++.|++.+.++++.. .++.++
T Consensus 38 ~~~~~l~~~~~~~l~~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~-------~~v~~~ 110 (210)
T 1nt2_A 38 PWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-------NNIIPL 110 (210)
T ss_dssp GGGCHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-------SSEEEE
T ss_pred hhHHHHHHHHHhhcccCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC-------CCeEEE
Confidence 4555666665543 3457889999999999999998888765579999999999988777766632 135677
Q ss_pred eeccccc----cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 372 VCNVRQL----CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 372 ~~Da~~l----~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
.+|+... ++. ++||+|++|.+. ... ...+++++.++|||| |++++..
T Consensus 111 ~~d~~~~~~~~~~~-~~fD~V~~~~~~------~~~----~~~~l~~~~r~Lkpg-G~l~i~~ 161 (210)
T 1nt2_A 111 LFDASKPWKYSGIV-EKVDLIYQDIAQ------KNQ----IEILKANAEFFLKEK-GEVVIMV 161 (210)
T ss_dssp CSCTTCGGGTTTTC-CCEEEEEECCCS------TTH----HHHHHHHHHHHEEEE-EEEEEEE
T ss_pred EcCCCCchhhcccc-cceeEEEEeccC------hhH----HHHHHHHHHHHhCCC-CEEEEEE
Confidence 8888764 344 789999999532 111 234577899999999 9999875
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.30 E-value=7.4e-11 Score=112.46 Aligned_cols=125 Identities=12% Similarity=0.105 Sum_probs=95.6
Q ss_pred HHHHHHHHHHhCC--CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 297 PTIAYNMVRLASP--IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 297 e~lAa~ll~la~~--~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
..++..+..+... .++.+|||+|||+|.++..++.. +..++|+|+++.+++.|++++...+. ++.+.++|
T Consensus 21 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~------~~~~~~~d 92 (246)
T 1y8c_A 21 KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGL------KPRLACQD 92 (246)
T ss_dssp HHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTC------CCEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCC------CeEEEecc
Confidence 3444455554432 26789999999999999998887 67899999999999999999986542 35789999
Q ss_pred cccccCCCCCeeEEEEcC-CCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHH
Q psy19 375 VRQLCFKPACVDGIVTDL-PFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHL 436 (494)
Q Consensus 375 a~~l~~~~~~~D~IVtNP-PYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l 436 (494)
+..++++ ++||+|+++. .+.. +... .-...+++++.++|+|| |.+++-+++...+
T Consensus 93 ~~~~~~~-~~fD~v~~~~~~l~~-~~~~----~~~~~~l~~~~~~L~pg-G~l~~~~~~~~~~ 148 (246)
T 1y8c_A 93 ISNLNIN-RKFDLITCCLDSTNY-IIDS----DDLKKYFKAVSNHLKEG-GVFIFDINSYYKL 148 (246)
T ss_dssp GGGCCCS-CCEEEEEECTTGGGG-CCSH----HHHHHHHHHHHTTEEEE-EEEEEEEECHHHH
T ss_pred cccCCcc-CCceEEEEcCccccc-cCCH----HHHHHHHHHHHHhcCCC-cEEEEEecCHHHH
Confidence 9998776 7899999987 5432 1111 22457788999999999 9999877766533
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-11 Score=124.86 Aligned_cols=118 Identities=14% Similarity=-0.003 Sum_probs=96.9
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
..+.+.+.++..+...++.+|||+|||+|.+++.++...+ ...|+|+|+++.+++.|++|+..+|+ .++.+.++
T Consensus 59 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~-----~~v~~~~~ 133 (317)
T 1dl5_A 59 SQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-----ENVIFVCG 133 (317)
T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEES
T ss_pred cCHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCeEEEEC
Confidence 4677888888888889999999999999999999988754 36799999999999999999998764 23789999
Q ss_pred ccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 374 NVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 374 Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
|+.+.+...++||+|++++|+.. +. +.+.++|+|| |++++.+..
T Consensus 134 d~~~~~~~~~~fD~Iv~~~~~~~-~~-------------~~~~~~Lkpg-G~lvi~~~~ 177 (317)
T 1dl5_A 134 DGYYGVPEFSPYDVIFVTVGVDE-VP-------------ETWFTQLKEG-GRVIVPINL 177 (317)
T ss_dssp CGGGCCGGGCCEEEEEECSBBSC-CC-------------HHHHHHEEEE-EEEEEEBCB
T ss_pred ChhhccccCCCeEEEEEcCCHHH-HH-------------HHHHHhcCCC-cEEEEEECC
Confidence 99886444578999999998642 11 2477799999 999887654
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.3e-11 Score=114.37 Aligned_cols=102 Identities=20% Similarity=0.146 Sum_probs=84.4
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
.++.+|||+|||+|.++..++.. +..++|+|+++.+++.|+++.. ...+.++++|+..+++++++||+|+
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~~~d~~~~~~~~~~fD~v~ 121 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGE--------GPDLSFIKGDLSSLPFENEQFEAIM 121 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTC--------BTTEEEEECBTTBCSSCTTCEEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcc--------cCCceEEEcchhcCCCCCCCccEEE
Confidence 46789999999999999999887 6799999999999999998752 2346899999999988778999999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
++-.+.. + .+ ...+++++.++|+|| |++++.+
T Consensus 122 ~~~~l~~-~---~~----~~~~l~~~~~~L~pg-G~l~i~~ 153 (242)
T 3l8d_A 122 AINSLEW-T---EE----PLRALNEIKRVLKSD-GYACIAI 153 (242)
T ss_dssp EESCTTS-S---SC----HHHHHHHHHHHEEEE-EEEEEEE
T ss_pred EcChHhh-c---cC----HHHHHHHHHHHhCCC-eEEEEEE
Confidence 9765442 1 22 236677899999999 9998876
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.30 E-value=9.6e-12 Score=117.25 Aligned_cols=116 Identities=14% Similarity=-0.008 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 296 KPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 296 ~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
.+..+..+..++...++.+|||+|||+|..++.++...+ +..++|+|+++.+++.|++|+..+++ ..++.++++|
T Consensus 41 ~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~~~d 116 (210)
T 3c3p_A 41 DRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGL----IDRVELQVGD 116 (210)
T ss_dssp CHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSG----GGGEEEEESC
T ss_pred CHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC----CceEEEEEec
Confidence 333344443344334567999999999999999988776 78999999999999999999997754 4568899999
Q ss_pred cccc-cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 375 VRQL-CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 375 a~~l-~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
+.+. +..++ ||+|++|.+. .+ |..+++.+.++|+|| |.+++
T Consensus 117 ~~~~~~~~~~-fD~v~~~~~~-------~~----~~~~l~~~~~~Lkpg-G~lv~ 158 (210)
T 3c3p_A 117 PLGIAAGQRD-IDILFMDCDV-------FN----GADVLERMNRCLAKN-ALLIA 158 (210)
T ss_dssp HHHHHTTCCS-EEEEEEETTT-------SC----HHHHHHHHGGGEEEE-EEEEE
T ss_pred HHHHhccCCC-CCEEEEcCCh-------hh----hHHHHHHHHHhcCCC-eEEEE
Confidence 9775 43346 9999999642 11 567778899999999 98876
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.3e-11 Score=126.87 Aligned_cols=123 Identities=15% Similarity=0.166 Sum_probs=91.2
Q ss_pred cchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
...+.+...++. ..++.+|||+|||+|++++.+|.. +..|+|+|+++.|++.|++|+..+++ . +.++++
T Consensus 276 ~~~e~l~~~~~~---~~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl----~--v~~~~~ 344 (425)
T 2jjq_A 276 YQAVNLVRKVSE---LVEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNV----D--AEFEVA 344 (425)
T ss_dssp HHHHHHHHHHHH---HCCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTC----C--EEEEEC
T ss_pred HHHHHHHHHhhc---cCCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCC----c--EEEEEC
Confidence 344555555544 457789999999999999999886 57999999999999999999998865 2 689999
Q ss_pred ccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHh
Q psy19 374 NVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHI 442 (494)
Q Consensus 374 Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~ 442 (494)
|+.++.. ..||+||+|||+. +.. ..+++.+. .|+|+ |. +++++++..+.+.+..
T Consensus 345 d~~~~~~--~~fD~Vv~dPPr~---g~~-------~~~~~~l~-~l~p~-gi-vyvsc~p~tlarDl~~ 398 (425)
T 2jjq_A 345 SDREVSV--KGFDTVIVDPPRA---GLH-------PRLVKRLN-REKPG-VI-VYVSCNPETFARDVKM 398 (425)
T ss_dssp CTTTCCC--TTCSEEEECCCTT---CSC-------HHHHHHHH-HHCCS-EE-EEEESCHHHHHHHHHH
T ss_pred ChHHcCc--cCCCEEEEcCCcc---chH-------HHHHHHHH-hcCCC-cE-EEEECChHHHHhHHhh
Confidence 9998743 2899999999963 221 12333343 48887 74 5566777666665553
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-11 Score=119.28 Aligned_cols=118 Identities=11% Similarity=0.019 Sum_probs=95.3
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
.....+..++......++.+|||+|||+|.++..++..+|+..++|+|+++.+++.|+++. .++.+.++|
T Consensus 17 ~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~----------~~~~~~~~d 86 (259)
T 2p35_A 17 ERTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL----------PNTNFGKAD 86 (259)
T ss_dssp GGGHHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS----------TTSEEEECC
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----------CCcEEEECC
Confidence 3445556677777777888999999999999999998877889999999999999999882 135789999
Q ss_pred cccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 375 VRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 375 a~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+..++ ++++||+|+++..+..- .+ ...+++++.++|+|| |++++.+++
T Consensus 87 ~~~~~-~~~~fD~v~~~~~l~~~----~~----~~~~l~~~~~~L~pg-G~l~~~~~~ 134 (259)
T 2p35_A 87 LATWK-PAQKADLLYANAVFQWV----PD----HLAVLSQLMDQLESG-GVLAVQMPD 134 (259)
T ss_dssp TTTCC-CSSCEEEEEEESCGGGS----TT----HHHHHHHHGGGEEEE-EEEEEEEEC
T ss_pred hhhcC-ccCCcCEEEEeCchhhC----CC----HHHHHHHHHHhcCCC-eEEEEEeCC
Confidence 99887 56789999998765422 12 346777899999999 999988763
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3e-11 Score=118.89 Aligned_cols=122 Identities=17% Similarity=0.148 Sum_probs=95.3
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC-CCCCeeE
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF-KPACVDG 387 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~-~~~~~D~ 387 (494)
..++.+|||+|||+|.++..++.. +...++|+|+++.+++.|++++...+. ..++.+.++|+..+++ .+++||+
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~fD~ 136 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKR----RFKVFFRAQDSYGRHMDLGKEFDV 136 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCC----SSEEEEEESCTTTSCCCCSSCEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCC----CccEEEEECCccccccCCCCCcCE
Confidence 457889999999999999987776 235899999999999999999986643 3467899999998876 4678999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHH
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQAL 440 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l 440 (494)
|+++..+..-... ..-...+++++.++|+|| |++++.+++...+...+
T Consensus 137 v~~~~~l~~~~~~----~~~~~~~l~~~~~~Lkpg-G~l~~~~~~~~~~~~~~ 184 (298)
T 1ri5_A 137 ISSQFSFHYAFST----SESLDIAQRNIARHLRPG-GYFIMTVPSRDVILERY 184 (298)
T ss_dssp EEEESCGGGGGSS----HHHHHHHHHHHHHTEEEE-EEEEEEEECHHHHHHHH
T ss_pred EEECchhhhhcCC----HHHHHHHHHHHHHhcCCC-CEEEEEECCHHHHHHHH
Confidence 9998543211111 223567888999999999 99999999876554443
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.8e-11 Score=122.03 Aligned_cols=94 Identities=23% Similarity=0.283 Sum_probs=82.5
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
..+.++..++..+.+.++.+|||+|||+|.++..++.. +..++|+|+|+.+++.|++++..++. ..++.++++|
T Consensus 12 ~d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~~~D 85 (285)
T 1zq9_A 12 KNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPV----ASKLQVLVGD 85 (285)
T ss_dssp CCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTT----GGGEEEEESC
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEEcc
Confidence 47889999999999989999999999999999999887 56999999999999999999975542 3467899999
Q ss_pred cccccCCCCCeeEEEEcCCCcc
Q psy19 375 VRQLCFKPACVDGIVTDLPFGK 396 (494)
Q Consensus 375 a~~l~~~~~~~D~IVtNPPYG~ 396 (494)
+.+++++ .||+|++|+||..
T Consensus 86 ~~~~~~~--~fD~vv~nlpy~~ 105 (285)
T 1zq9_A 86 VLKTDLP--FFDTCVANLPYQI 105 (285)
T ss_dssp TTTSCCC--CCSEEEEECCGGG
T ss_pred eecccch--hhcEEEEecCccc
Confidence 9987664 7999999999964
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-11 Score=118.37 Aligned_cols=119 Identities=11% Similarity=0.062 Sum_probs=91.0
Q ss_pred cchHHHHHHHHHHh---CCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCccccee
Q psy19 294 TLKPTIAYNMVRLA---SPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVS 369 (494)
Q Consensus 294 ~L~e~lAa~ll~la---~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~ 369 (494)
|.++.+++.++... ...++.+|||+|||+|++++.++.. .+...++|+|+++.+++.+++|++.+ .++.
T Consensus 53 p~~~~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-------~~v~ 125 (227)
T 1g8a_A 53 PNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-------RNIV 125 (227)
T ss_dssp TTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-------TTEE
T ss_pred CCchhHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-------CCCE
Confidence 34566777774433 3678899999999999999999876 35579999999999999999999743 3468
Q ss_pred eeeecccccc---CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 370 PLVCNVRQLC---FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 370 ~~~~Da~~l~---~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
++++|+.+.. ...++||+|++|+|. . + ....++.++.++|+|| |++++..
T Consensus 126 ~~~~d~~~~~~~~~~~~~~D~v~~~~~~------~-~---~~~~~l~~~~~~Lkpg-G~l~~~~ 178 (227)
T 1g8a_A 126 PILGDATKPEEYRALVPKVDVIFEDVAQ------P-T---QAKILIDNAEVYLKRG-GYGMIAV 178 (227)
T ss_dssp EEECCTTCGGGGTTTCCCEEEEEECCCS------T-T---HHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred EEEccCCCcchhhcccCCceEEEECCCC------H-h---HHHHHHHHHHHhcCCC-CEEEEEE
Confidence 8999998742 123589999999981 1 1 1234467899999999 9988864
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=4.4e-12 Score=120.78 Aligned_cols=118 Identities=15% Similarity=0.068 Sum_probs=93.9
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
+.+..+..+..++...++.+|||+|||+|.+++.++...+ +..++|+|+++.+++.|++|+..+|+ ..++.++++
T Consensus 53 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~----~~~i~~~~~ 128 (229)
T 2avd_A 53 MTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA----EHKIDLRLK 128 (229)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC----TTTEEEEES
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC----CCeEEEEEc
Confidence 4455566666666666788999999999999999998765 68999999999999999999998764 356789999
Q ss_pred ccccc--cCCC----CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 374 NVRQL--CFKP----ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 374 Da~~l--~~~~----~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
|+.+. .+.. ++||+|++|+|.. .|..+++.+.++|+|| |.+++
T Consensus 129 d~~~~~~~~~~~~~~~~~D~v~~d~~~~-----------~~~~~l~~~~~~L~pg-G~lv~ 177 (229)
T 2avd_A 129 PALETLDELLAAGEAGTFDVAVVDADKE-----------NCSAYYERCLQLLRPG-GILAV 177 (229)
T ss_dssp CHHHHHHHHHHTTCTTCEEEEEECSCST-----------THHHHHHHHHHHEEEE-EEEEE
T ss_pred CHHHHHHHHHhcCCCCCccEEEECCCHH-----------HHHHHHHHHHHHcCCC-eEEEE
Confidence 98664 1211 5899999999821 1567777899999999 98877
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.5e-11 Score=110.27 Aligned_cols=118 Identities=16% Similarity=0.076 Sum_probs=92.9
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEE
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGI 388 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~I 388 (494)
..++.+|||+|||+|.++..++.. +..++|+|+++.+++.|+.|+. .+.+.++|+..+++++++||+|
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~----------~~~~~~~d~~~~~~~~~~~D~i 111 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFP----------EARWVVGDLSVDQISETDFDLI 111 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCT----------TSEEEECCTTTSCCCCCCEEEE
T ss_pred ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCC----------CCcEEEcccccCCCCCCceeEE
Confidence 457889999999999999998887 6799999999999999998864 1478899999887766799999
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC-----HHHHHHHHHhcc
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD-----RKHLIQALHITS 444 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~-----~~~l~~~l~~~~ 444 (494)
+++|+.-.... ......++..+.++|+|| |.+++..+. ...+.+.+...|
T Consensus 112 ~~~~~~~~~~~-----~~~~~~~l~~~~~~l~~~-G~l~~~~~~~~~~~~~~~~~~l~~~G 166 (195)
T 3cgg_A 112 VSAGNVMGFLA-----EDGREPALANIHRALGAD-GRAVIGFGAGRGWVFGDFLEVAERVG 166 (195)
T ss_dssp EECCCCGGGSC-----HHHHHHHHHHHHHHEEEE-EEEEEEEETTSSCCHHHHHHHHHHHT
T ss_pred EECCcHHhhcC-----hHHHHHHHHHHHHHhCCC-CEEEEEeCCCCCcCHHHHHHHHHHcC
Confidence 99977543332 122457788999999999 999886653 334666666655
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.6e-11 Score=114.30 Aligned_cols=119 Identities=15% Similarity=-0.008 Sum_probs=95.9
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
..+.+++.++.++...++.+|||+|||+|.+++.++... +...++|+|+++.+++.|++|+...++ ..+.+.++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~v~~~~~ 135 (215)
T 2yxe_A 61 SAIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY-----DNVIVIVG 135 (215)
T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC-----TTEEEEES
T ss_pred CcHHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCeEEEEC
Confidence 457778888888888899999999999999999988875 447999999999999999999987764 23688899
Q ss_pred ccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 374 NVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 374 Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
|+.......++||+|+++.++..-. .++.++|+|| |++++.++..
T Consensus 136 d~~~~~~~~~~fD~v~~~~~~~~~~--------------~~~~~~L~pg-G~lv~~~~~~ 180 (215)
T 2yxe_A 136 DGTLGYEPLAPYDRIYTTAAGPKIP--------------EPLIRQLKDG-GKLLMPVGRY 180 (215)
T ss_dssp CGGGCCGGGCCEEEEEESSBBSSCC--------------HHHHHTEEEE-EEEEEEESSS
T ss_pred CcccCCCCCCCeeEEEECCchHHHH--------------HHHHHHcCCC-cEEEEEECCC
Confidence 9865322246899999998764211 2578899999 9999988764
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-12 Score=124.55 Aligned_cols=110 Identities=16% Similarity=0.163 Sum_probs=85.4
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCC-HHHHHHH---HHHHHhccCCCCcccceeeeeeccccccCC-CCC
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDIN-EKLVLKT---QANVLHNSGNLNRELKVSPLVCNVRQLCFK-PAC 384 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did-~~al~~A---r~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~-~~~ 384 (494)
.++.+|||+|||+|.+++.+|...++..|+|+|++ +.+++.| ++++...++ .++.+.++|+..+|.. .+.
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~-----~~v~~~~~d~~~l~~~~~d~ 97 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL-----SNVVFVIAAAESLPFELKNI 97 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC-----SSEEEECCBTTBCCGGGTTC
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC-----CCeEEEEcCHHHhhhhccCe
Confidence 47789999999999999999877788999999999 6666666 877776553 2478999999988632 267
Q ss_pred eeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 385 VDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 385 ~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
+|.|.+|+||+... ......+..+++++.++|||| |++++
T Consensus 98 v~~i~~~~~~~~~~---~~~~~~~~~~l~~~~r~LkpG-G~l~i 137 (225)
T 3p2e_A 98 ADSISILFPWGTLL---EYVIKPNRDILSNVADLAKKE-AHFEF 137 (225)
T ss_dssp EEEEEEESCCHHHH---HHHHTTCHHHHHHHHTTEEEE-EEEEE
T ss_pred EEEEEEeCCCcHHh---hhhhcchHHHHHHHHHhcCCC-cEEEE
Confidence 99999999987531 011111346788999999999 99988
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=9.4e-12 Score=120.35 Aligned_cols=109 Identities=13% Similarity=0.043 Sum_probs=85.1
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc--cCCCCCeeE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL--CFKPACVDG 387 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l--~~~~~~~D~ 387 (494)
.+|.+|||+|||+|.++..++...+ ..++|+|+++.+++.|+++....+ ..+.++.+|+..+ ++++++||.
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~FD~ 131 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQT------HKVIPLKGLWEDVAPTLPDGHFDG 131 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGCS------SEEEEEESCHHHHGGGSCTTCEEE
T ss_pred cCCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhCC------CceEEEeehHHhhcccccccCCce
Confidence 4788999999999999988877644 589999999999999999988654 2457888888765 466789999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
|+.|+......... ......+++++.|+|||| |++++.
T Consensus 132 i~~D~~~~~~~~~~---~~~~~~~~~e~~rvLkPG-G~l~f~ 169 (236)
T 3orh_A 132 ILYDTYPLSEETWH---THQFNFIKNHAFRLLKPG-GVLTYC 169 (236)
T ss_dssp EEECCCCCBGGGTT---THHHHHHHHTHHHHEEEE-EEEEEC
T ss_pred EEEeeeecccchhh---hcchhhhhhhhhheeCCC-CEEEEE
Confidence 99998654322111 123557788999999999 988775
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.28 E-value=5.2e-11 Score=114.63 Aligned_cols=118 Identities=11% Similarity=0.005 Sum_probs=91.6
Q ss_pred HHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc
Q psy19 299 IAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378 (494)
Q Consensus 299 lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l 378 (494)
....++......++.+|||+|||+|.++..++... ...++|+|+++.+++.|++++... ..+.+.++|+..+
T Consensus 81 ~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~d~~~~ 152 (254)
T 1xtp_A 81 GSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM-------PVGKFILASMETA 152 (254)
T ss_dssp HHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS-------SEEEEEESCGGGC
T ss_pred HHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccC-------CceEEEEccHHHC
Confidence 33455555555678899999999999999887764 357999999999999999987632 3468999999998
Q ss_pred cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 379 CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 379 ~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
++++++||+|+++..+.. +. ..-...+++++.++|+|| |++++..+
T Consensus 153 ~~~~~~fD~v~~~~~l~~-~~-----~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 198 (254)
T 1xtp_A 153 TLPPNTYDLIVIQWTAIY-LT-----DADFVKFFKHCQQALTPN-GYIFFKEN 198 (254)
T ss_dssp CCCSSCEEEEEEESCGGG-SC-----HHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred CCCCCCeEEEEEcchhhh-CC-----HHHHHHHHHHHHHhcCCC-eEEEEEec
Confidence 877789999999764331 11 122457788999999999 99988764
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-12 Score=127.00 Aligned_cols=118 Identities=20% Similarity=0.133 Sum_probs=95.3
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
+.+..+..|..++...++.+|||+|||+|..++.+|...+ +..|+|+|+++.+++.|++|+..+|+ ..++.++++
T Consensus 44 i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~----~~~i~~~~g 119 (242)
T 3r3h_A 44 VAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQ----EHKIKLRLG 119 (242)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTC----TTTEEEEES
T ss_pred cCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEc
Confidence 5566666666666656678999999999999999998765 78999999999999999999998765 456899999
Q ss_pred ccccccCC------CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 374 NVRQLCFK------PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 374 Da~~l~~~------~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
|+.+.... .++||+|++|.+. .. |..+++.+.++|+|| |.+++
T Consensus 120 da~~~l~~~~~~~~~~~fD~V~~d~~~-------~~----~~~~l~~~~~~LkpG-G~lv~ 168 (242)
T 3r3h_A 120 PALDTLHSLLNEGGEHQFDFIFIDADK-------TN----YLNYYELALKLVTPK-GLIAI 168 (242)
T ss_dssp CHHHHHHHHHHHHCSSCEEEEEEESCG-------GG----HHHHHHHHHHHEEEE-EEEEE
T ss_pred CHHHHHHHHhhccCCCCEeEEEEcCCh-------HH----hHHHHHHHHHhcCCC-eEEEE
Confidence 99775211 3689999999761 11 556777899999999 98887
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.9e-11 Score=114.03 Aligned_cols=119 Identities=20% Similarity=0.149 Sum_probs=91.3
Q ss_pred CCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEEc
Q psy19 312 GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTD 391 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtN 391 (494)
+.+|||+|||+|.++..++.. +..++|+|+++.+++.|++++...+ ...++.+.++|+.+++. +++||+|+++
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~-~~~fD~v~~~ 139 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMASP--ERFVVGLDISESALAKANETYGSSP----KAEYFSFVKEDVFTWRP-TELFDLIFDY 139 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCBT--TEEEEEECSCHHHHHHHHHHHTTSG----GGGGEEEECCCTTTCCC-SSCEEEEEEE
T ss_pred CCCEEEeCCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHhhccC----CCcceEEEECchhcCCC-CCCeeEEEEC
Confidence 349999999999999988764 7899999999999999999998543 23568899999999764 3689999998
Q ss_pred CCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec-------------CHHHHHHHHHhcc
Q psy19 392 LPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS-------------DRKHLIQALHITS 444 (494)
Q Consensus 392 PPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~-------------~~~~l~~~l~~~~ 444 (494)
..+..- . ..+ ...+++++.++|+|| |+++++.. ....+...+...|
T Consensus 140 ~~l~~~-~-~~~----~~~~l~~~~~~Lkpg-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 198 (235)
T 3lcc_A 140 VFFCAI-E-PEM----RPAWAKSMYELLKPD-GELITLMYPITDHVGGPPYKVDVSTFEEVLVPIG 198 (235)
T ss_dssp SSTTTS-C-GGG----HHHHHHHHHHHEEEE-EEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGT
T ss_pred hhhhcC-C-HHH----HHHHHHHHHHHCCCC-cEEEEEEecccccCCCCCccCCHHHHHHHHHHcC
Confidence 665421 1 112 456777899999999 99887653 2344666666655
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.3e-11 Score=117.92 Aligned_cols=118 Identities=20% Similarity=0.195 Sum_probs=91.8
Q ss_pred HHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc
Q psy19 299 IAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378 (494)
Q Consensus 299 lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l 378 (494)
+...++......++.+|||+|||+|.+++.++... +..++|+|+++.+++.|++++...++ ..++.+.++|+.++
T Consensus 52 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~~ 126 (287)
T 1kpg_A 52 KIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSEN----LRSKRVLLAGWEQF 126 (287)
T ss_dssp HHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCC----CSCEEEEESCGGGC
T ss_pred HHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCC----CCCeEEEECChhhC
Confidence 33445555667788999999999999999988544 46999999999999999999987654 34678999999876
Q ss_pred cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 379 CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 379 ~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+ ++||+|++.-.+.. ++. .+ +..+++++.++|||| |++++.+.
T Consensus 127 ~---~~fD~v~~~~~l~~-~~~-~~----~~~~l~~~~~~Lkpg-G~l~~~~~ 169 (287)
T 1kpg_A 127 D---EPVDRIVSIGAFEH-FGH-ER----YDAFFSLAHRLLPAD-GVMLLHTI 169 (287)
T ss_dssp C---CCCSEEEEESCGGG-TCT-TT----HHHHHHHHHHHSCTT-CEEEEEEE
T ss_pred C---CCeeEEEEeCchhh-cCh-HH----HHHHHHHHHHhcCCC-CEEEEEEe
Confidence 5 68999999754331 111 12 456777899999999 99988654
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-11 Score=124.24 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=90.8
Q ss_pred HHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc
Q psy19 298 TIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ 377 (494)
Q Consensus 298 ~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~ 377 (494)
....+++......++.+|||+|||+|.+++.++.. +...++|+|++ .+++.|++|+..+++ .+++.++++|+.+
T Consensus 25 ~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~~~~~a~~~~~~~~~----~~~i~~~~~d~~~ 98 (328)
T 1g6q_1 25 SYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMAKELVELNGF----SDKITLLRGKLED 98 (328)
T ss_dssp HHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-THHHHHHHHHHHTTC----TTTEEEEESCTTT
T ss_pred HHHHHHHhhHhhcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-HHHHHHHHHHHHcCC----CCCEEEEECchhh
Confidence 34455555444557789999999999999998886 23589999999 599999999998765 4568899999999
Q ss_pred ccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEE
Q psy19 378 LCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAI 427 (494)
Q Consensus 378 l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lv 427 (494)
++++.++||+|+++++... +..... ...++..+.++|+|| |.++
T Consensus 99 ~~~~~~~~D~Ivs~~~~~~-l~~~~~----~~~~l~~~~~~Lkpg-G~li 142 (328)
T 1g6q_1 99 VHLPFPKVDIIISEWMGYF-LLYESM----MDTVLYARDHYLVEG-GLIF 142 (328)
T ss_dssp SCCSSSCEEEEEECCCBTT-BSTTCC----HHHHHHHHHHHEEEE-EEEE
T ss_pred ccCCCCcccEEEEeCchhh-cccHHH----HHHHHHHHHhhcCCC-eEEE
Confidence 8776678999999988332 111222 345666789999999 9876
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-11 Score=126.56 Aligned_cols=114 Identities=16% Similarity=0.046 Sum_probs=88.4
Q ss_pred HHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC
Q psy19 302 NMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK 381 (494)
Q Consensus 302 ~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~ 381 (494)
++.......++.+|||+|||+|.+++.++.. +...|+|+|+++ +++.|++|+..+++ .+++.++++|+.+++++
T Consensus 57 ~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~-~l~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~ 130 (349)
T 3q7e_A 57 SMFHNRHLFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSS-ISDYAVKIVKANKL----DHVVTIIKGKVEEVELP 130 (349)
T ss_dssp HHHTCHHHHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTC----TTTEEEEESCTTTCCCS
T ss_pred HHHhccccCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHH-HHHHHHHHHHHcCC----CCcEEEEECcHHHccCC
Confidence 3333333457889999999999999999887 345999999995 99999999998765 45689999999999887
Q ss_pred CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEE
Q psy19 382 PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAI 427 (494)
Q Consensus 382 ~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lv 427 (494)
+++||+|+++++... +..... ...++..+.++|+|| |.++
T Consensus 131 ~~~fD~Iis~~~~~~-l~~~~~----~~~~l~~~~r~Lkpg-G~li 170 (349)
T 3q7e_A 131 VEKVDIIISEWMGYC-LFYESM----LNTVLHARDKWLAPD-GLIF 170 (349)
T ss_dssp SSCEEEEEECCCBBT-BTBTCC----HHHHHHHHHHHEEEE-EEEE
T ss_pred CCceEEEEEcccccc-ccCchh----HHHHHHHHHHhCCCC-CEEc
Confidence 789999999986322 211222 345666899999999 9864
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.27 E-value=4.2e-11 Score=118.40 Aligned_cols=120 Identities=13% Similarity=0.058 Sum_probs=96.2
Q ss_pred HHHHHHHHHH-hCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 297 PTIAYNMVRL-ASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 297 e~lAa~ll~l-a~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
+.....++.. ....++.+|||+|||+|.+++.++..+| +..++|+|+++.+++.|++++...+ .++.+.++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~------~~v~~~~~d 80 (284)
T 3gu3_A 7 DDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP------YDSEFLEGD 80 (284)
T ss_dssp HHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS------SEEEEEESC
T ss_pred hHHHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC------CceEEEEcc
Confidence 3444445443 3567889999999999999999998877 4899999999999999999998543 257899999
Q ss_pred cccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 375 VRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 375 a~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+.+++++ ++||+|+++..+.. + .+ ...+++++.++|+|| |.+++..++
T Consensus 81 ~~~~~~~-~~fD~v~~~~~l~~-~---~~----~~~~l~~~~~~Lkpg-G~l~~~~~~ 128 (284)
T 3gu3_A 81 ATEIELN-DKYDIAICHAFLLH-M---TT----PETMLQKMIHSVKKG-GKIICFEPH 128 (284)
T ss_dssp TTTCCCS-SCEEEEEEESCGGG-C---SS----HHHHHHHHHHTEEEE-EEEEEEECC
T ss_pred hhhcCcC-CCeeEEEECChhhc-C---CC----HHHHHHHHHHHcCCC-CEEEEEecc
Confidence 9998774 69999999876442 2 12 246777899999999 999998877
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.5e-11 Score=117.75 Aligned_cols=108 Identities=15% Similarity=0.169 Sum_probs=89.1
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-CCCCCeeEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-FKPACVDGIV 389 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~~~~~~D~IV 389 (494)
++.+|||+|||+|.++..++.. +..++|+|+++.+++.|++++...++ ..++.++++|+.+++ +.+++||+|+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~fD~v~ 141 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGV----SDNMQFIHCAAQDVASHLETPVDLIL 141 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CC----GGGEEEEESCGGGTGGGCSSCEEEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC----CcceEEEEcCHHHhhhhcCCCceEEE
Confidence 3679999999999999999887 67999999999999999999987653 456889999999986 6668999999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
++-.+.. + .+ ...+++++.++|+|| |++++.+++.
T Consensus 142 ~~~~l~~-~---~~----~~~~l~~~~~~Lkpg-G~l~~~~~~~ 176 (285)
T 4htf_A 142 FHAVLEW-V---AD----PRSVLQTLWSVLRPG-GVLSLMFYNA 176 (285)
T ss_dssp EESCGGG-C---SC----HHHHHHHHHHTEEEE-EEEEEEEEBH
T ss_pred ECchhhc-c---cC----HHHHHHHHHHHcCCC-eEEEEEEeCC
Confidence 9865432 1 12 246778999999999 9999887754
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-11 Score=126.42 Aligned_cols=118 Identities=14% Similarity=0.136 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccc
Q psy19 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVR 376 (494)
Q Consensus 297 e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~ 376 (494)
..+..+++......++.+|||+|||+|.+++.++... ...|+|+|++ .+++.|++|+..+++ ..++.++++|+.
T Consensus 49 ~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~a~~~~~~~~~----~~~v~~~~~d~~ 122 (376)
T 3r0q_C 49 DAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMADHARALVKANNL----DHIVEVIEGSVE 122 (376)
T ss_dssp HHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESS-TTHHHHHHHHHHTTC----TTTEEEEESCGG
T ss_pred HHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccH-HHHHHHHHHHHHcCC----CCeEEEEECchh
Confidence 3445556555566788999999999999999999873 2499999999 999999999998765 456899999999
Q ss_pred cccCCCCCeeEEEEcC-CCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 377 QLCFKPACVDGIVTDL-PFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 377 ~l~~~~~~~D~IVtNP-PYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
+++++ ++||+|++|+ +|... .... ...++..+.++|+|| |.+++
T Consensus 123 ~~~~~-~~~D~Iv~~~~~~~l~--~e~~----~~~~l~~~~~~Lkpg-G~li~ 167 (376)
T 3r0q_C 123 DISLP-EKVDVIISEWMGYFLL--RESM----FDSVISARDRWLKPT-GVMYP 167 (376)
T ss_dssp GCCCS-SCEEEEEECCCBTTBT--TTCT----HHHHHHHHHHHEEEE-EEEES
T ss_pred hcCcC-CcceEEEEcChhhccc--chHH----HHHHHHHHHhhCCCC-eEEEE
Confidence 98776 7899999998 34322 1112 345666789999999 87754
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=3.5e-11 Score=120.53 Aligned_cols=118 Identities=19% Similarity=0.180 Sum_probs=93.3
Q ss_pred HHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc
Q psy19 299 IAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378 (494)
Q Consensus 299 lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l 378 (494)
....++......++.+|||+|||+|.+++.++... ++.++|+|+++.+++.|++++...++ ..++.+.++|+.++
T Consensus 78 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~ 152 (318)
T 2fk8_A 78 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDT----NRSRQVLLQGWEDF 152 (318)
T ss_dssp HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCC----SSCEEEEESCGGGC
T ss_pred HHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEECChHHC
Confidence 34455555667789999999999999999988764 56999999999999999999987654 34578999999887
Q ss_pred cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 379 CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 379 ~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+ ++||+|+++..+.. ++. .+ +..+++++.++|+|| |++++.++
T Consensus 153 ~---~~fD~v~~~~~l~~-~~~-~~----~~~~l~~~~~~Lkpg-G~l~~~~~ 195 (318)
T 2fk8_A 153 A---EPVDRIVSIEAFEH-FGH-EN----YDDFFKRCFNIMPAD-GRMTVQSS 195 (318)
T ss_dssp C---CCCSEEEEESCGGG-TCG-GG----HHHHHHHHHHHSCTT-CEEEEEEE
T ss_pred C---CCcCEEEEeChHHh-cCH-HH----HHHHHHHHHHhcCCC-cEEEEEEe
Confidence 4 68999999865431 211 12 456778899999999 99988655
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-11 Score=117.67 Aligned_cols=124 Identities=19% Similarity=0.092 Sum_probs=93.9
Q ss_pred chHHHHHHHHHHhC--CCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 295 LKPTIAYNMVRLAS--PIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 295 L~e~lAa~ll~la~--~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
..+.+.+.++.+.. ..++.+|||+|||+|.+++.++... +...++|+|+++.+++.|++|+..++.......++.+.
T Consensus 59 ~~p~~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~ 138 (226)
T 1i1n_A 59 SAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLV 138 (226)
T ss_dssp CCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEE
T ss_pred cCHHHHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEE
Confidence 34555666666664 6788999999999999999888763 44699999999999999999998754200001357889
Q ss_pred eeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 372 VCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 372 ~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
++|+...+...+.||+|+++.|+.. ++..+.++|+|| |++++.++..
T Consensus 139 ~~d~~~~~~~~~~fD~i~~~~~~~~--------------~~~~~~~~Lkpg-G~lv~~~~~~ 185 (226)
T 1i1n_A 139 VGDGRMGYAEEAPYDAIHVGAAAPV--------------VPQALIDQLKPG-GRLILPVGPA 185 (226)
T ss_dssp ESCGGGCCGGGCCEEEEEECSBBSS--------------CCHHHHHTEEEE-EEEEEEESCT
T ss_pred ECCcccCcccCCCcCEEEECCchHH--------------HHHHHHHhcCCC-cEEEEEEecC
Confidence 9998876544568999999988632 123578899999 9999887653
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.7e-11 Score=114.71 Aligned_cols=114 Identities=13% Similarity=0.156 Sum_probs=91.9
Q ss_pred HHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC
Q psy19 302 NMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHT-FFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380 (494)
Q Consensus 302 ~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~-~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~ 380 (494)
.+..+....++.+|||+|||+|.++..++.. +. .++|+|+++.+++.|++++.. ..+.+.++|+..+++
T Consensus 34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~d~~~~~~ 103 (243)
T 3bkw_A 34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH--GASYVLGLDLSEKMLARARAAGPD--------TGITYERADLDKLHL 103 (243)
T ss_dssp HHHHHSCCCTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTSCS--------SSEEEEECCGGGCCC
T ss_pred HHHHhccccCCCEEEEEcCcCCHHHHHHHHC--CCCeEEEEcCCHHHHHHHHHhccc--------CCceEEEcChhhccC
Confidence 3555566667889999999999999988877 45 899999999999999987652 246889999999887
Q ss_pred CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHH
Q psy19 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRK 434 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~ 434 (494)
++++||+|+++..+... . + ...+++++.++|+|| |++++.+++..
T Consensus 104 ~~~~fD~v~~~~~l~~~-~---~----~~~~l~~~~~~L~pg-G~l~~~~~~~~ 148 (243)
T 3bkw_A 104 PQDSFDLAYSSLALHYV-E---D----VARLFRTVHQALSPG-GHFVFSTEHPI 148 (243)
T ss_dssp CTTCEEEEEEESCGGGC-S---C----HHHHHHHHHHHEEEE-EEEEEEEECHH
T ss_pred CCCCceEEEEecccccc-c---h----HHHHHHHHHHhcCcC-cEEEEEeCCcc
Confidence 77899999998765422 1 2 346777899999999 99999887754
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.4e-11 Score=116.31 Aligned_cols=114 Identities=11% Similarity=0.133 Sum_probs=91.1
Q ss_pred HHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCC
Q psy19 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKP 382 (494)
Q Consensus 303 ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~ 382 (494)
++.+....++.+|||+|||+|.++..++...+ ..++|+|+++.+++.|++++. ...+.+.++|+..+++++
T Consensus 36 l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~~~d~~~~~~~~ 106 (253)
T 3g5l_A 36 LKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGA-KKVLGIDLSERMLTEAKRKTT--------SPVVCYEQKAIEDIAIEP 106 (253)
T ss_dssp HHTTCCCCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHCC--------CTTEEEEECCGGGCCCCT
T ss_pred HHHhhhccCCCEEEEECCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHhhc--------cCCeEEEEcchhhCCCCC
Confidence 34444555788999999999999999988743 389999999999999999876 134689999999988877
Q ss_pred CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHH
Q psy19 383 ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRK 434 (494)
Q Consensus 383 ~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~ 434 (494)
++||+|+++-.+..- .+ ...+++++.++|+|| |++++.++...
T Consensus 107 ~~fD~v~~~~~l~~~----~~----~~~~l~~~~~~Lkpg-G~l~~~~~~~~ 149 (253)
T 3g5l_A 107 DAYNVVLSSLALHYI----AS----FDDICKKVYINLKSS-GSFIFSVEHPV 149 (253)
T ss_dssp TCEEEEEEESCGGGC----SC----HHHHHHHHHHHEEEE-EEEEEEEECHH
T ss_pred CCeEEEEEchhhhhh----hh----HHHHHHHHHHHcCCC-cEEEEEeCCCc
Confidence 899999998654321 22 346777899999999 99999877754
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.6e-11 Score=120.73 Aligned_cols=93 Identities=16% Similarity=0.242 Sum_probs=77.7
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
..+.++..++..+.+.++.+|||+|||+|.++..++.. +..++|+|+|+.+++.|++|+..++. .++.++++|
T Consensus 26 ~~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~-----~~v~~~~~D 98 (299)
T 2h1r_A 26 KNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGY-----NNLEVYEGD 98 (299)
T ss_dssp CCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTC-----CCEEC----
T ss_pred cCHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCC-----CceEEEECc
Confidence 47888999999999889999999999999999998876 57999999999999999999986553 357899999
Q ss_pred cccccCCCCCeeEEEEcCCCcc
Q psy19 375 VRQLCFKPACVDGIVTDLPFGK 396 (494)
Q Consensus 375 a~~l~~~~~~~D~IVtNPPYG~ 396 (494)
+..+++ .+||+|++||||..
T Consensus 99 ~~~~~~--~~~D~Vv~n~py~~ 118 (299)
T 2h1r_A 99 AIKTVF--PKFDVCTANIPYKI 118 (299)
T ss_dssp CCSSCC--CCCSEEEEECCGGG
T ss_pred hhhCCc--ccCCEEEEcCCccc
Confidence 998765 47999999999973
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-10 Score=115.58 Aligned_cols=116 Identities=17% Similarity=0.057 Sum_probs=86.9
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc-cCCCCCeeEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-CFKPACVDGIV 389 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-~~~~~~~D~IV 389 (494)
.+.+|||+|||+|.++++++...+...++++|+|+.+++.|++|+...+... ...+++++.+|+... +...++||+|+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~-~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKL-DDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTT-TSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhcccc-CCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 4579999999999999999877566899999999999999999986431100 134689999998874 33346899999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+|+|+.... ...+ .-..|++.+.++|+|| |.+++-+.+
T Consensus 154 ~d~~~~~~~--~~~l--~~~~~~~~~~~~L~pg-G~lv~~~~~ 191 (275)
T 1iy9_A 154 VDSTEPVGP--AVNL--FTKGFYAGIAKALKED-GIFVAQTDN 191 (275)
T ss_dssp ESCSSCCSC--CCCC--STTHHHHHHHHHEEEE-EEEEEECCC
T ss_pred ECCCCCCCc--chhh--hHHHHHHHHHHhcCCC-cEEEEEcCC
Confidence 999974322 1111 0135666899999999 999887543
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.25 E-value=5.4e-11 Score=114.93 Aligned_cols=117 Identities=17% Similarity=0.212 Sum_probs=90.5
Q ss_pred HHHHHHHHH-HhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecc
Q psy19 297 PTIAYNMVR-LASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNV 375 (494)
Q Consensus 297 e~lAa~ll~-la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da 375 (494)
..+...++. .....++.+|||+|||+|.+++.++.. +..++|+|+++.+++.|++++. .+ ..++.+.++|+
T Consensus 24 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~-~~-----~~~~~~~~~d~ 95 (263)
T 2yqz_A 24 GQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIA-GV-----DRKVQVVQADA 95 (263)
T ss_dssp HHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTT-TS-----CTTEEEEESCT
T ss_pred HHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhh-cc-----CCceEEEEccc
Confidence 334444433 235677889999999999999998876 6799999999999999999982 21 24578999999
Q ss_pred ccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 376 RQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 376 ~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
..+++++++||+|+++-.+.. +. + ...+++++.++|+|| |.+++..
T Consensus 96 ~~~~~~~~~fD~v~~~~~l~~-~~---~----~~~~l~~~~~~L~pg-G~l~~~~ 141 (263)
T 2yqz_A 96 RAIPLPDESVHGVIVVHLWHL-VP---D----WPKVLAEAIRVLKPG-GALLEGW 141 (263)
T ss_dssp TSCCSCTTCEEEEEEESCGGG-CT---T----HHHHHHHHHHHEEEE-EEEEEEE
T ss_pred ccCCCCCCCeeEEEECCchhh-cC---C----HHHHHHHHHHHCCCC-cEEEEEe
Confidence 998877789999999865442 11 2 346777899999999 9888763
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.25 E-value=5e-11 Score=113.56 Aligned_cols=116 Identities=14% Similarity=-0.023 Sum_probs=94.4
Q ss_pred cchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
...+.+++.++..+...++.+|||+|||+|.++..++.. +..++|+|+++.+++.|+.|+...+ ++.+.++
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~-------~v~~~~~ 123 (231)
T 1vbf_A 53 TTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSYYN-------NIKLILG 123 (231)
T ss_dssp ECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTCS-------SEEEEES
T ss_pred cCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHH--cCEEEEEeCCHHHHHHHHHHHhhcC-------CeEEEEC
Confidence 356778888888888889999999999999999999887 3799999999999999999998543 4688999
Q ss_pred ccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 374 NVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 374 Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
|+.......++||+|+++.++.. +. .++.++|+|| |++++.++..
T Consensus 124 d~~~~~~~~~~fD~v~~~~~~~~-~~-------------~~~~~~L~pg-G~l~~~~~~~ 168 (231)
T 1vbf_A 124 DGTLGYEEEKPYDRVVVWATAPT-LL-------------CKPYEQLKEG-GIMILPIGVG 168 (231)
T ss_dssp CGGGCCGGGCCEEEEEESSBBSS-CC-------------HHHHHTEEEE-EEEEEEECSS
T ss_pred CcccccccCCCccEEEECCcHHH-HH-------------HHHHHHcCCC-cEEEEEEcCC
Confidence 99873223468999999987542 11 2477899999 9999988754
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.25 E-value=7.2e-11 Score=122.24 Aligned_cols=110 Identities=18% Similarity=0.167 Sum_probs=89.6
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhc-----c-CCCCcccceeeeeeccccc---
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHN-----S-GNLNRELKVSPLVCNVRQL--- 378 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~-----g-~~~~~~~~i~~~~~Da~~l--- 378 (494)
..++.+|||+|||+|.+++.++... ++..++|+|+++.+++.|++|+..+ | . ...++.++++|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~---~~~~v~~~~~d~~~l~~~ 157 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSP---SRSNVRFLKGFIENLATA 157 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSST---TCCCEEEEESCTTCGGGC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhccccc---CCCceEEEEccHHHhhhc
Confidence 4578899999999999999988764 6789999999999999999998765 3 1 114678999999887
Q ss_pred ---cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 379 ---CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 379 ---~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
++++++||+|++|..+..- . + ...+++++.++|||| |++++..
T Consensus 158 ~~~~~~~~~fD~V~~~~~l~~~-~---d----~~~~l~~~~r~Lkpg-G~l~i~~ 203 (383)
T 4fsd_A 158 EPEGVPDSSVDIVISNCVCNLS-T---N----KLALFKEIHRVLRDG-GELYFSD 203 (383)
T ss_dssp BSCCCCTTCEEEEEEESCGGGC-S---C----HHHHHHHHHHHEEEE-EEEEEEE
T ss_pred ccCCCCCCCEEEEEEccchhcC-C---C----HHHHHHHHHHHcCCC-CEEEEEE
Confidence 7777899999999876532 1 2 346777999999999 9988853
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.25 E-value=6.7e-11 Score=114.02 Aligned_cols=116 Identities=16% Similarity=0.128 Sum_probs=88.8
Q ss_pred HHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCC
Q psy19 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKP 382 (494)
Q Consensus 303 ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~ 382 (494)
++......++.+|||+|||+|.+++.++.. +..++|+|+++.+++.|++|+...+. ++.+.++|+.+++++
T Consensus 33 ~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~------~v~~~~~d~~~~~~~- 103 (252)
T 1wzn_A 33 IFKEDAKREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNL------KIEFLQGDVLEIAFK- 103 (252)
T ss_dssp HHHHTCSSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC------CCEEEESCGGGCCCC-
T ss_pred HHHHhcccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCC------ceEEEECChhhcccC-
Confidence 333344456789999999999999999887 67999999999999999999987653 367899999988765
Q ss_pred CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 383 ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 383 ~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
++||+|++........ . ......+++++.++|+|| |.+++-.++.
T Consensus 104 ~~fD~v~~~~~~~~~~-~----~~~~~~~l~~~~~~L~pg-G~li~~~~~~ 148 (252)
T 1wzn_A 104 NEFDAVTMFFSTIMYF-D----EEDLRKLFSKVAEALKPG-GVFITDFPCW 148 (252)
T ss_dssp SCEEEEEECSSGGGGS-C----HHHHHHHHHHHHHHEEEE-EEEEEEEEC-
T ss_pred CCccEEEEcCCchhcC-C----HHHHHHHHHHHHHHcCCC-eEEEEeccch
Confidence 6899999853211111 1 123567788999999999 9988766653
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.9e-11 Score=116.16 Aligned_cols=119 Identities=19% Similarity=0.098 Sum_probs=95.6
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
....+.+++.++.+..+.++.+|||+|||+|.+++.++...+ ..++|+|+++.+++.|++|+..+++ ..+.+..
T Consensus 73 ~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~-----~~v~~~~ 146 (235)
T 1jg1_A 73 TVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGV-----KNVHVIL 146 (235)
T ss_dssp EECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEE
T ss_pred eeccHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCC-----CCcEEEE
Confidence 345778888899988888999999999999999999988765 7899999999999999999997764 2368889
Q ss_pred eccccccCCC-CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 373 CNVRQLCFKP-ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 373 ~Da~~l~~~~-~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
+|+ ..+++. ..||+|+++.+...- ...+.++|+|| |++++.+++.
T Consensus 147 ~d~-~~~~~~~~~fD~Ii~~~~~~~~--------------~~~~~~~L~pg-G~lvi~~~~~ 192 (235)
T 1jg1_A 147 GDG-SKGFPPKAPYDVIIVTAGAPKI--------------PEPLIEQLKIG-GKLIIPVGSY 192 (235)
T ss_dssp SCG-GGCCGGGCCEEEEEECSBBSSC--------------CHHHHHTEEEE-EEEEEEECSS
T ss_pred CCc-ccCCCCCCCccEEEECCcHHHH--------------HHHHHHhcCCC-cEEEEEEecC
Confidence 997 334433 359999998764311 11477899999 9999988764
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-11 Score=122.26 Aligned_cols=126 Identities=9% Similarity=0.101 Sum_probs=95.2
Q ss_pred HHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccc
Q psy19 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVR 376 (494)
Q Consensus 297 e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~ 376 (494)
...+..++......++ +|||+|||+|.++..++.. +..++|+|+++.+++.|++++...+. .+..++.++++|+.
T Consensus 69 ~~~~~~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~~~v~~~~~d~~ 143 (299)
T 3g2m_A 69 TSEAREFATRTGPVSG-PVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPA--DVRDRCTLVQGDMS 143 (299)
T ss_dssp HHHHHHHHHHHCCCCS-CEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCH--HHHTTEEEEECBTT
T ss_pred cHHHHHHHHhhCCCCC-cEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhccc--ccccceEEEeCchh
Confidence 3445556666665444 8999999999999999887 67899999999999999999986542 11145789999999
Q ss_pred cccCCCCCeeEEEEcCC-CccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHH
Q psy19 377 QLCFKPACVDGIVTDLP-FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKH 435 (494)
Q Consensus 377 ~l~~~~~~~D~IVtNPP-YG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~ 435 (494)
++++ +++||+|++... +. .. . ......+++++.++|+|| |++++.+++...
T Consensus 144 ~~~~-~~~fD~v~~~~~~~~-~~-~----~~~~~~~l~~~~~~L~pg-G~l~~~~~~~~~ 195 (299)
T 3g2m_A 144 AFAL-DKRFGTVVISSGSIN-EL-D----EADRRGLYASVREHLEPG-GKFLLSLAMSEA 195 (299)
T ss_dssp BCCC-SCCEEEEEECHHHHT-TS-C----HHHHHHHHHHHHHHEEEE-EEEEEEEECCHH
T ss_pred cCCc-CCCcCEEEECCcccc-cC-C----HHHHHHHHHHHHHHcCCC-cEEEEEeecCcc
Confidence 9887 579999987421 11 11 1 122457788999999999 999998887653
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-10 Score=117.02 Aligned_cols=117 Identities=13% Similarity=0.059 Sum_probs=86.8
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC--CCCCee
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF--KPACVD 386 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~--~~~~~D 386 (494)
..++.+|||+|||+|.++.+++...+...++++|+|+.+++.|++++...... ....++.++.+|+..++. .+++||
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~-~~~~~v~~~~~D~~~~~~~~~~~~fD 171 (304)
T 3bwc_A 93 HPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRS-LADPRATVRVGDGLAFVRQTPDNTYD 171 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGG-GGCTTEEEEESCHHHHHHSSCTTCEE
T ss_pred CCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcc-cCCCcEEEEECcHHHHHHhccCCcee
Confidence 34668999999999999999997766679999999999999999988431100 113467899999988743 357899
Q ss_pred EEEEcCCCccccCCccchHHHH-HHHHHHHhhcccCCCcEEEEEecC
Q psy19 387 GIVTDLPFGKRVGSKSNNFLLY-RLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 387 ~IVtNPPYG~r~~~~~~~~~ly-~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+||+|+|+... . ...+| ..|++.+.++|+|| |.+++.+..
T Consensus 172 vIi~d~~~~~~--~---~~~l~~~~~l~~~~~~Lkpg-G~lv~~~~~ 212 (304)
T 3bwc_A 172 VVIIDTTDPAG--P---ASKLFGEAFYKDVLRILKPD-GICCNQGES 212 (304)
T ss_dssp EEEEECC--------------CCHHHHHHHHHHEEEE-EEEEEEECC
T ss_pred EEEECCCCccc--c---chhhhHHHHHHHHHHhcCCC-cEEEEecCC
Confidence 99999986421 1 12233 56778999999999 999887654
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.24 E-value=6.8e-11 Score=110.15 Aligned_cols=105 Identities=15% Similarity=0.047 Sum_probs=86.0
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
.++ +|||+|||+|.++..++.. +..++|+|+++.+++.|++++...+. ++.+.++|+..+++++++||+|+
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~d~~~~~~~~~~fD~v~ 99 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGV------KITTVQSNLADFDIVADAWEGIV 99 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTC------CEEEECCBTTTBSCCTTTCSEEE
T ss_pred CCC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCC------ceEEEEcChhhcCCCcCCccEEE
Confidence 456 9999999999999988876 67999999999999999999987643 46789999998887778999999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
++..+- . ......+++++.++|+|| |++++.+..
T Consensus 100 ~~~~~~----~----~~~~~~~l~~~~~~L~pg-G~l~~~~~~ 133 (202)
T 2kw5_A 100 SIFCHL----P----SSLRQQLYPKVYQGLKPG-GVFILEGFA 133 (202)
T ss_dssp EECCCC----C----HHHHHHHHHHHHTTCCSS-EEEEEEEEC
T ss_pred EEhhcC----C----HHHHHHHHHHHHHhcCCC-cEEEEEEec
Confidence 974321 1 123457788999999999 999988653
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.9e-11 Score=115.02 Aligned_cols=122 Identities=14% Similarity=0.153 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHh--CCCCCCEEEEEcCCcChHHHHHHhcC-----CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccce
Q psy19 296 KPTIAYNMVRLA--SPIPGDVFLDPMCGGGTIPVECSLSY-----PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKV 368 (494)
Q Consensus 296 ~e~lAa~ll~la--~~~~g~~VLDP~CGSGtilIEAA~~~-----~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i 368 (494)
.+.+.+.++.+. ...++.+|||+|||+|.+++.++... +...++|+|+++.+++.|++|+...++......++
T Consensus 63 ~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v 142 (227)
T 2pbf_A 63 APHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNF 142 (227)
T ss_dssp CHHHHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTE
T ss_pred ChHHHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCE
Confidence 445556666665 57788999999999999999988874 34699999999999999999998765100001357
Q ss_pred eeeeecccccc----CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 369 SPLVCNVRQLC----FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 369 ~~~~~Da~~l~----~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
.+.++|+.... ...++||+|+++.++.. +++.+.++|+|| |++++.++.
T Consensus 143 ~~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~--------------~~~~~~~~Lkpg-G~lv~~~~~ 195 (227)
T 2pbf_A 143 KIIHKNIYQVNEEEKKELGLFDAIHVGASASE--------------LPEILVDLLAEN-GKLIIPIEE 195 (227)
T ss_dssp EEEECCGGGCCHHHHHHHCCEEEEEECSBBSS--------------CCHHHHHHEEEE-EEEEEEEEE
T ss_pred EEEECChHhcccccCccCCCcCEEEECCchHH--------------HHHHHHHhcCCC-cEEEEEEcc
Confidence 89999998754 34468999999987642 123578899999 999887764
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-10 Score=105.82 Aligned_cols=144 Identities=18% Similarity=0.130 Sum_probs=102.3
Q ss_pred HHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCC
Q psy19 304 VRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPA 383 (494)
Q Consensus 304 l~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~ 383 (494)
+......++.+|||+|||+|.++..++..+ ..++|+|+++.+++.|+++. .++.+.++| ++++++
T Consensus 10 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~----------~~v~~~~~d---~~~~~~ 74 (170)
T 3i9f_A 10 LPNIFEGKKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEKF----------DSVITLSDP---KEIPDN 74 (170)
T ss_dssp HHHHHSSCCEEEEEETCTTCTTHHHHHTTE--EEEEEECSCHHHHHHHHHHC----------TTSEEESSG---GGSCTT
T ss_pred HHhcCcCCCCeEEEECCCCCHHHHHHHhhc--CeEEEEeCCHHHHHHHHHhC----------CCcEEEeCC---CCCCCC
Confidence 334456678899999999999999998874 48999999999999999981 135788888 566678
Q ss_pred CeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC---------------HHHHHHHHHhccccce
Q psy19 384 CVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD---------------RKHLIQALHITSALWK 448 (494)
Q Consensus 384 ~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~---------------~~~l~~~l~~~~~l~~ 448 (494)
+||+|+++..+..- .+ ...+++++.++|+|| |++++.... ...+.+.+. | |.
T Consensus 75 ~~D~v~~~~~l~~~----~~----~~~~l~~~~~~L~pg-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--G--f~ 141 (170)
T 3i9f_A 75 SVDFILFANSFHDM----DD----KQHVISEVKRILKDD-GRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--N--FV 141 (170)
T ss_dssp CEEEEEEESCSTTC----SC----HHHHHHHHHHHEEEE-EEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--T--EE
T ss_pred ceEEEEEccchhcc----cC----HHHHHHHHHHhcCCC-CEEEEEEcCccccccCchHhhhcCHHHHHHHHh--C--cE
Confidence 99999998765422 12 346777899999999 999887542 223444444 3 34
Q ss_pred eeeeEEEccCCceEEEEEEeeCCCCCCCcc
Q psy19 449 CRKQIKINMSGMKSFVFILNRTADLFDYAI 478 (494)
Q Consensus 449 ~~~~~~v~~Ggl~~~i~v~~~~~~~~d~~~ 478 (494)
..+. ..-+-..+.+++.....++.|+-
T Consensus 142 ~~~~---~~~~~~~~~l~~~~~~~~~~~~~ 168 (170)
T 3i9f_A 142 VEKR---FNPTPYHFGLVLKRKTSEGHHHH 168 (170)
T ss_dssp EEEE---ECSSTTEEEEEEEECCCCSCCCC
T ss_pred EEEc---cCCCCceEEEEEecCCCCccccc
Confidence 3332 22233456777777777766653
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.7e-11 Score=126.62 Aligned_cols=121 Identities=14% Similarity=0.018 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHH-------HHHHHhccCCCCcccce
Q psy19 296 KPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKT-------QANVLHNSGNLNRELKV 368 (494)
Q Consensus 296 ~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~A-------r~Nl~~~g~~~~~~~~i 368 (494)
.+.+++.|+..+.+.++.+|||+|||+|.+++.+|...+...++|+|+++.+++.| ++|+...|+. ..++
T Consensus 227 ~p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~---~~nV 303 (433)
T 1u2z_A 227 LPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR---LNNV 303 (433)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC---CCCE
T ss_pred cHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC---CCce
Confidence 37788889999999999999999999999999999876556899999999999999 8999877631 1357
Q ss_pred eeeeeccccc--cC--CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 369 SPLVCNVRQL--CF--KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 369 ~~~~~Da~~l--~~--~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
.++++|.... ++ ..+.||+|++|.... . .+ ...+|.++.++|+|| |++++.
T Consensus 304 ~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l~---~--~d----~~~~L~el~r~LKpG-G~lVi~ 358 (433)
T 1u2z_A 304 EFSLKKSFVDNNRVAELIPQCDVILVNNFLF---D--ED----LNKKVEKILQTAKVG-CKIISL 358 (433)
T ss_dssp EEEESSCSTTCHHHHHHGGGCSEEEECCTTC---C--HH----HHHHHHHHHTTCCTT-CEEEES
T ss_pred EEEEcCccccccccccccCCCCEEEEeCccc---c--cc----HHHHHHHHHHhCCCC-eEEEEe
Confidence 7888765432 11 136899999985431 1 12 335567899999999 997765
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.3e-11 Score=118.64 Aligned_cols=117 Identities=13% Similarity=0.006 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 296 KPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 296 ~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
.+..+..+..++...++.+|||+|||+|..++.+|...+ +..++++|+++.+++.|++|+..+|+ ..++.++.+|
T Consensus 64 ~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~----~~~i~~~~gd 139 (247)
T 1sui_A 64 SADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV----DHKIDFREGP 139 (247)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC----GGGEEEEESC
T ss_pred CHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCCeEEEECC
Confidence 444454444444445667999999999999999998766 78999999999999999999998764 4578999999
Q ss_pred cccc-c-C-----CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 375 VRQL-C-F-----KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 375 a~~l-~-~-----~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
+.+. + + ..++||+|++|.+. . .|..+++.+.++|+|| |.+++
T Consensus 140 a~~~l~~l~~~~~~~~~fD~V~~d~~~-------~----~~~~~l~~~~~~LkpG-G~lv~ 188 (247)
T 1sui_A 140 ALPVLDEMIKDEKNHGSYDFIFVDADK-------D----NYLNYHKRLIDLVKVG-GVIGY 188 (247)
T ss_dssp HHHHHHHHHHSGGGTTCBSEEEECSCS-------T----THHHHHHHHHHHBCTT-CCEEE
T ss_pred HHHHHHHHHhccCCCCCEEEEEEcCch-------H----HHHHHHHHHHHhCCCC-eEEEE
Confidence 8764 3 2 14689999998652 1 1567778899999999 98776
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.8e-11 Score=111.15 Aligned_cols=108 Identities=17% Similarity=0.085 Sum_probs=82.8
Q ss_pred HHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc---
Q psy19 302 NMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL--- 378 (494)
Q Consensus 302 ~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l--- 378 (494)
.++......++.+|||+|||+|.++..++.. +..++|+|+++.+++.|+++ . .+.+..+|+..+
T Consensus 43 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~---~--------~~~~~~~~~~~~~~~ 109 (227)
T 3e8s_A 43 AILLAILGRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAA---G--------AGEVHLASYAQLAEA 109 (227)
T ss_dssp HHHHHHHHTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHT---C--------SSCEEECCHHHHHTT
T ss_pred HHHHHhhcCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh---c--------ccccchhhHHhhccc
Confidence 3444444456689999999999999998877 67999999999999999987 1 135777787776
Q ss_pred cCCC-CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 379 CFKP-ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 379 ~~~~-~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
++.. .+||+|+++..+. .. + ...+++++.++|+|| |++++.+++
T Consensus 110 ~~~~~~~fD~v~~~~~l~--~~---~----~~~~l~~~~~~L~pg-G~l~~~~~~ 154 (227)
T 3e8s_A 110 KVPVGKDYDLICANFALL--HQ---D----IIELLSAMRTLLVPG-GALVIQTLH 154 (227)
T ss_dssp CSCCCCCEEEEEEESCCC--SS---C----CHHHHHHHHHTEEEE-EEEEEEECC
T ss_pred ccccCCCccEEEECchhh--hh---h----HHHHHHHHHHHhCCC-eEEEEEecC
Confidence 4333 4599999998766 21 2 235677899999999 999997763
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=5.1e-11 Score=123.65 Aligned_cols=104 Identities=17% Similarity=0.096 Sum_probs=83.8
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhc---------------cCCCCcccceeeeeecc
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN---------------SGNLNRELKVSPLVCNV 375 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~---------------g~~~~~~~~i~~~~~Da 375 (494)
++.+|||+|||+|.+++++|...++..|+++|+|+.+++.|++|++.+ ++ . .+.++++|+
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl----~-~i~v~~~Da 121 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE----K-TIVINHDDA 121 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS----S-EEEEEESCH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC----C-ceEEEcCcH
Confidence 678999999999999999998866678999999999999999999988 53 2 278999999
Q ss_pred ccccC-CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 376 RQLCF-KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 376 ~~l~~-~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
..+.. ....||+|+.|||+. ...++..+.+.|++| |.+++.+.+
T Consensus 122 ~~~~~~~~~~fD~I~lDP~~~------------~~~~l~~a~~~lk~g-G~l~vt~td 166 (378)
T 2dul_A 122 NRLMAERHRYFHFIDLDPFGS------------PMEFLDTALRSAKRR-GILGVTATD 166 (378)
T ss_dssp HHHHHHSTTCEEEEEECCSSC------------CHHHHHHHHHHEEEE-EEEEEEECC
T ss_pred HHHHHhccCCCCEEEeCCCCC------------HHHHHHHHHHhcCCC-CEEEEEeec
Confidence 87631 135799999998642 125666788999998 977665443
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.2e-11 Score=119.81 Aligned_cols=110 Identities=17% Similarity=0.157 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccc
Q psy19 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVR 376 (494)
Q Consensus 297 e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~ 376 (494)
+.+...|..... .+.+|||+|||+|.++..++.. +..|+|+|+++.|++.|+++ .++.+.++|+.
T Consensus 27 ~~l~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~--~~~v~gvD~s~~ml~~a~~~-----------~~v~~~~~~~e 91 (257)
T 4hg2_A 27 RALFRWLGEVAP--ARGDALDCGCGSGQASLGLAEF--FERVHAVDPGEAQIRQALRH-----------PRVTYAVAPAE 91 (257)
T ss_dssp HHHHHHHHHHSS--CSSEEEEESCTTTTTHHHHHTT--CSEEEEEESCHHHHHTCCCC-----------TTEEEEECCTT
T ss_pred HHHHHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHh--CCEEEEEeCcHHhhhhhhhc-----------CCceeehhhhh
Confidence 455555655553 4568999999999999988877 57899999999999876531 24689999999
Q ss_pred cccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 377 QLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 377 ~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
++++++++||+|++.--+. ..+ ...+++++.|+|||| |.+++++.
T Consensus 92 ~~~~~~~sfD~v~~~~~~h-----~~~----~~~~~~e~~rvLkpg-G~l~~~~~ 136 (257)
T 4hg2_A 92 DTGLPPASVDVAIAAQAMH-----WFD----LDRFWAELRRVARPG-AVFAAVTY 136 (257)
T ss_dssp CCCCCSSCEEEEEECSCCT-----TCC----HHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred hhcccCCcccEEEEeeehh-----Hhh----HHHHHHHHHHHcCCC-CEEEEEEC
Confidence 9999889999999964432 112 235777999999999 99988764
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.8e-11 Score=111.45 Aligned_cols=110 Identities=16% Similarity=0.073 Sum_probs=85.0
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeE
Q psy19 308 SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG 387 (494)
Q Consensus 308 ~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~ 387 (494)
...++.+|||+|||+|.+.+.++.. ++..++|+|+++.+++.|++++...+. ++.+.++|+.++++++++||+
T Consensus 20 ~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~d~~~~~~~~~~fD~ 92 (209)
T 2p8j_A 20 ESNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNF------KLNISKGDIRKLPFKDESMSF 92 (209)
T ss_dssp HSSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTC------CCCEEECCTTSCCSCTTCEEE
T ss_pred ccCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCC------ceEEEECchhhCCCCCCceeE
Confidence 3456789999999999985544333 367999999999999999999986542 357899999998877789999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
|+++..+.. +. ..-...+++++.++|+|| |++++...
T Consensus 93 v~~~~~l~~-~~-----~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 129 (209)
T 2p8j_A 93 VYSYGTIFH-MR-----KNDVKEAIDEIKRVLKPG-GLACINFL 129 (209)
T ss_dssp EEECSCGGG-SC-----HHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred EEEcChHHh-CC-----HHHHHHHHHHHHHHcCCC-cEEEEEEe
Confidence 999754321 11 122557788999999999 99888654
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.22 E-value=3e-11 Score=113.88 Aligned_cols=104 Identities=10% Similarity=0.103 Sum_probs=83.8
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEE
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGI 388 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~I 388 (494)
..++.+|||+|||+|.++..++.. +..++|+|+++.+++.|++++. .++.+.++|+.+++++ ++||+|
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~---------~~~~~~~~d~~~~~~~-~~fD~v 110 (220)
T 3hnr_A 43 NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP---------KEFSITEGDFLSFEVP-TSIDTI 110 (220)
T ss_dssp HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSC---------TTCCEESCCSSSCCCC-SCCSEE
T ss_pred ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCC---------CceEEEeCChhhcCCC-CCeEEE
Confidence 347889999999999999998887 6799999999999999998865 2357899999998877 899999
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+++..+.. +. + .....+++++.++|+|| |.+++..+
T Consensus 111 ~~~~~l~~-~~---~--~~~~~~l~~~~~~Lkpg-G~l~i~~~ 146 (220)
T 3hnr_A 111 VSTYAFHH-LT---D--DEKNVAIAKYSQLLNKG-GKIVFADT 146 (220)
T ss_dssp EEESCGGG-SC---H--HHHHHHHHHHHHHSCTT-CEEEEEEE
T ss_pred EECcchhc-CC---h--HHHHHHHHHHHHhcCCC-CEEEEEec
Confidence 99865432 11 1 11234778999999999 99998754
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.22 E-value=6.5e-11 Score=121.14 Aligned_cols=118 Identities=13% Similarity=0.135 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccc
Q psy19 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVR 376 (494)
Q Consensus 297 e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~ 376 (494)
.....+++......++.+|||+|||+|.+++.++.. +...|+|+|+++ +++.|+++++.+++ ..++.++++|+.
T Consensus 36 ~~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~l----~~~v~~~~~d~~ 109 (348)
T 2y1w_A 36 GTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNNL----TDRIVVIPGKVE 109 (348)
T ss_dssp HHHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTC----TTTEEEEESCTT
T ss_pred HHHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHHHcCC----CCcEEEEEcchh
Confidence 345566666666668899999999999999998876 346999999996 88999999998764 456899999999
Q ss_pred cccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 377 QLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 377 ~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
+++++ ++||+||+++++..-. . .. +..++..+.++|+|| |.+++
T Consensus 110 ~~~~~-~~~D~Ivs~~~~~~~~-~-~~----~~~~l~~~~~~Lkpg-G~li~ 153 (348)
T 2y1w_A 110 EVSLP-EQVDIIISEPMGYMLF-N-ER----MLESYLHAKKYLKPS-GNMFP 153 (348)
T ss_dssp TCCCS-SCEEEEEECCCBTTBT-T-TS----HHHHHHHGGGGEEEE-EEEES
T ss_pred hCCCC-CceeEEEEeCchhcCC-h-HH----HHHHHHHHHhhcCCC-eEEEE
Confidence 88765 6899999998843221 1 12 234455789999999 98764
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.2e-11 Score=115.12 Aligned_cols=118 Identities=16% Similarity=0.153 Sum_probs=87.1
Q ss_pred hCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCee
Q psy19 307 ASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVD 386 (494)
Q Consensus 307 a~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D 386 (494)
....++.+|||+|||+|.+++.++..+|+..++|+|+++.|++.+.++++......+. .++.+.++|+.++++.++. |
T Consensus 23 l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~-~~v~~~~~d~~~l~~~~~~-d 100 (218)
T 3mq2_A 23 LRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGL-PNLLYLWATAERLPPLSGV-G 100 (218)
T ss_dssp HHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCC-TTEEEEECCSTTCCSCCCE-E
T ss_pred hhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCC-CceEEEecchhhCCCCCCC-C
Confidence 3456888999999999999999999988899999999999988755554321101111 3578999999999887666 9
Q ss_pred EEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 387 GIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 387 ~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
.|....||...... ...-...+++++.++|||| |++++..
T Consensus 101 ~v~~~~~~~~~~~~---~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 140 (218)
T 3mq2_A 101 ELHVLMPWGSLLRG---VLGSSPEMLRGMAAVCRPG-ASFLVAL 140 (218)
T ss_dssp EEEEESCCHHHHHH---HHTSSSHHHHHHHHTEEEE-EEEEEEE
T ss_pred EEEEEccchhhhhh---hhccHHHHHHHHHHHcCCC-cEEEEEe
Confidence 98888887542100 0000146778999999999 9988854
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.1e-11 Score=117.80 Aligned_cols=115 Identities=21% Similarity=0.244 Sum_probs=94.1
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
..+.++..++......++.+|||+|||+|.+++.++. ++..++|+|+++.+++.|+.+. ++.+.++|
T Consensus 18 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~-----------~~~~~~~d 84 (261)
T 3ege_A 18 PDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHP-----------QVEWFTGY 84 (261)
T ss_dssp CCHHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCT-----------TEEEECCC
T ss_pred ccHHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhcc-----------CCEEEECc
Confidence 4456888888888888899999999999999999887 4789999999999988776543 35789999
Q ss_pred cccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 375 VRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 375 a~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+.++++++++||+|+++..+..- .+ ...+++++.++|| | |++++++.+
T Consensus 85 ~~~~~~~~~~fD~v~~~~~l~~~----~~----~~~~l~~~~~~Lk-g-G~~~~~~~~ 132 (261)
T 3ege_A 85 AENLALPDKSVDGVISILAIHHF----SH----LEKSFQEMQRIIR-D-GTIVLLTFD 132 (261)
T ss_dssp TTSCCSCTTCBSEEEEESCGGGC----SS----HHHHHHHHHHHBC-S-SCEEEEEEC
T ss_pred hhhCCCCCCCEeEEEEcchHhhc----cC----HHHHHHHHHHHhC-C-cEEEEEEcC
Confidence 99988877899999998765422 22 3467778999999 9 988887765
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.2e-11 Score=119.28 Aligned_cols=120 Identities=17% Similarity=0.081 Sum_probs=86.2
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCC----------------------------
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGN---------------------------- 361 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~---------------------------- 361 (494)
.++.+|||+|||+|.+++.+|..++...|+|+|+++.+++.|++|+...+..
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 3678999999999999999999888889999999999999999998765421
Q ss_pred -------------------------CCcccceeeeeecccccc-----CCCCCeeEEEEcCCCccccCCccchHHHHHHH
Q psy19 362 -------------------------LNRELKVSPLVCNVRQLC-----FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLF 411 (494)
Q Consensus 362 -------------------------~~~~~~i~~~~~Da~~l~-----~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~f 411 (494)
.....++.+.++|+...+ +..++||+|+++-.... +. ......-...+
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~-ih-l~~~~~~~~~~ 202 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKW-VH-LNWGDEGLKRM 202 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHH-HH-HHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHH-hh-hcCCHHHHHHH
Confidence 001146889999987543 35679999999643200 00 00012235678
Q ss_pred HHHHhhcccCCCcEEEEEecC
Q psy19 412 LIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 412 L~~l~rvLkpg~G~lvllt~~ 432 (494)
++++.++|+|| |++++....
T Consensus 203 l~~~~~~LkpG-G~lil~~~~ 222 (292)
T 3g07_A 203 FRRIYRHLRPG-GILVLEPQP 222 (292)
T ss_dssp HHHHHHHEEEE-EEEEEECCC
T ss_pred HHHHHHHhCCC-cEEEEecCC
Confidence 88999999999 998886543
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.2e-11 Score=118.65 Aligned_cols=111 Identities=17% Similarity=0.264 Sum_probs=88.9
Q ss_pred HHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc
Q psy19 300 AYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC 379 (494)
Q Consensus 300 Aa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~ 379 (494)
+..++......++.+|||+|||+|.++..++. ++..++|+|+++.+++.|+.++. ++.+.++|+..++
T Consensus 46 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~----------~~~~~~~d~~~~~ 113 (279)
T 3ccf_A 46 GEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYP----------HLHFDVADARNFR 113 (279)
T ss_dssp CCHHHHHHCCCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCT----------TSCEEECCTTTCC
T ss_pred HHHHHHHhCCCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCC----------CCEEEECChhhCC
Confidence 33455666677889999999999999999887 57899999999999999998751 2468899999887
Q ss_pred CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 380 FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 380 ~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+ +++||+|+++..+.. +. + ...+++++.++|+|| |++++.++.
T Consensus 114 ~-~~~fD~v~~~~~l~~-~~---d----~~~~l~~~~~~Lkpg-G~l~~~~~~ 156 (279)
T 3ccf_A 114 V-DKPLDAVFSNAMLHW-VK---E----PEAAIASIHQALKSG-GRFVAEFGG 156 (279)
T ss_dssp C-SSCEEEEEEESCGGG-CS---C----HHHHHHHHHHHEEEE-EEEEEEEEC
T ss_pred c-CCCcCEEEEcchhhh-Cc---C----HHHHHHHHHHhcCCC-cEEEEEecC
Confidence 6 479999999876542 11 2 236777899999999 999987764
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.21 E-value=4.7e-13 Score=130.15 Aligned_cols=123 Identities=11% Similarity=0.093 Sum_probs=92.1
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
+.+.++..++..+...++.+|||+|||+|.++..++.. +..++|+|+|+.+++.|++|+.. ..++.++++|
T Consensus 13 ~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~--~~~v~~id~~~~~~~~a~~~~~~-------~~~v~~~~~D 83 (245)
T 1yub_A 13 TSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKL-------NTRVTLIHQD 83 (245)
T ss_dssp CCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTT-------CSEEEECCSC
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHhcc-------CCceEEEECC
Confidence 45667788888888888999999999999999999887 47999999999999999888751 2457899999
Q ss_pred cccccCCC-CCeeEEEEcCCCccccCCccchHHHHH------HHH----HHHhhcccCCCcEEEEEec
Q psy19 375 VRQLCFKP-ACVDGIVTDLPFGKRVGSKSNNFLLYR------LFL----IEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 375 a~~l~~~~-~~~D~IVtNPPYG~r~~~~~~~~~ly~------~fL----~~l~rvLkpg~G~lvllt~ 431 (494)
+.+++++. ++| .||+||||.... ..+..+.. .++ +.+.++|+|| |++++++.
T Consensus 84 ~~~~~~~~~~~f-~vv~n~Py~~~~---~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~-G~l~v~~~ 146 (245)
T 1yub_A 84 ILQFQFPNKQRY-KIVGNIPYHLST---QIIKKVVFESRASDIYLIVEEGFYKRTLDIH-RTLGLLLH 146 (245)
T ss_dssp CTTTTCCCSSEE-EEEEECCSSSCH---HHHHHHHHHCCCEEEEEEEESSHHHHHHCGG-GSHHHHTT
T ss_pred hhhcCcccCCCc-EEEEeCCccccH---HHHHHHHhCCCCCeEEEEeeHHHHHHHhCCC-Cchhhhhe
Confidence 99987653 578 899999998532 11111110 112 4467777777 76665543
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.2e-11 Score=115.80 Aligned_cols=118 Identities=13% Similarity=0.004 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 296 KPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 296 ~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
.+..+..+..++...++.+|||+|||+|..++.+|...+ +..++++|+++.+++.|++|+..+|+ ..++.++++|
T Consensus 55 ~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~----~~~i~~~~gd 130 (237)
T 3c3y_A 55 SPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGV----EHKINFIESD 130 (237)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC----GGGEEEEESC
T ss_pred CHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEcC
Confidence 445555555555555677999999999999999988766 78999999999999999999998764 4568999999
Q ss_pred cccc-c-C-----CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 375 VRQL-C-F-----KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 375 a~~l-~-~-----~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+.+. + + ..++||+|++|.+- . .|..+++.+.++|+|| |.+++-
T Consensus 131 a~~~l~~l~~~~~~~~~fD~I~~d~~~-------~----~~~~~l~~~~~~L~pG-G~lv~d 180 (237)
T 3c3y_A 131 AMLALDNLLQGQESEGSYDFGFVDADK-------P----NYIKYHERLMKLVKVG-GIVAYD 180 (237)
T ss_dssp HHHHHHHHHHSTTCTTCEEEEEECSCG-------G----GHHHHHHHHHHHEEEE-EEEEEE
T ss_pred HHHHHHHHHhccCCCCCcCEEEECCch-------H----HHHHHHHHHHHhcCCC-eEEEEe
Confidence 8765 2 2 14689999998641 1 2667788899999999 987764
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.7e-11 Score=114.93 Aligned_cols=119 Identities=14% Similarity=0.023 Sum_probs=92.7
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
+.+..+..+..++...++.+|||+|||+|..++.+|...+ +..++++|+++.+++.|++|+..+|+ ..++.+..+
T Consensus 56 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~----~~~i~~~~~ 131 (232)
T 3cbg_A 56 ISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGV----AEKISLRLG 131 (232)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC----GGGEEEEES
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEc
Confidence 3455555555555545677999999999999999998765 67999999999999999999998764 456889999
Q ss_pred ccccc----cCCC--CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 374 NVRQL----CFKP--ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 374 Da~~l----~~~~--~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
|+.+. +..+ ++||+|++|.+. . .|..+++.+.++|+|| |.+++-
T Consensus 132 d~~~~l~~l~~~~~~~~fD~V~~d~~~-------~----~~~~~l~~~~~~Lkpg-G~lv~~ 181 (232)
T 3cbg_A 132 PALATLEQLTQGKPLPEFDLIFIDADK-------R----NYPRYYEIGLNLLRRG-GLMVID 181 (232)
T ss_dssp CHHHHHHHHHTSSSCCCEEEEEECSCG-------G----GHHHHHHHHHHTEEEE-EEEEEE
T ss_pred CHHHHHHHHHhcCCCCCcCEEEECCCH-------H----HHHHHHHHHHHHcCCC-eEEEEe
Confidence 97653 2222 689999999761 1 2667788899999999 988773
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.4e-10 Score=114.58 Aligned_cols=115 Identities=11% Similarity=-0.003 Sum_probs=84.4
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhc--cCCCCcccceeeeeeccccc-cCCCCCeeE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN--SGNLNRELKVSPLVCNVRQL-CFKPACVDG 387 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~--g~~~~~~~~i~~~~~Da~~l-~~~~~~~D~ 387 (494)
.+.+|||+|||+|.++++++...+...++++|+|+.+++.|++|+... +. -..+++++.+|+... +...++||+
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~---~~~~v~~~~~D~~~~l~~~~~~fD~ 166 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGF---DDPRAEIVIANGAEYVRKFKNEFDV 166 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGG---GCTTEEEEESCHHHHGGGCSSCEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcccc---CCCceEEEECcHHHHHhhCCCCceE
Confidence 457999999999999999988766789999999999999999998642 21 024688999998774 333468999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
|++|+|.. ..+....+ ....|++.+.++|+|| |.+++.+.+
T Consensus 167 Ii~d~~~~-~~~~~~~l--~~~~~l~~~~~~Lkpg-G~lv~~~~~ 207 (296)
T 1inl_A 167 IIIDSTDP-TAGQGGHL--FTEEFYQACYDALKED-GVFSAETED 207 (296)
T ss_dssp EEEEC-----------C--CSHHHHHHHHHHEEEE-EEEEEECCC
T ss_pred EEEcCCCc-ccCchhhh--hHHHHHHHHHHhcCCC-cEEEEEccC
Confidence 99999753 11111111 1356777899999999 999887654
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.20 E-value=3.6e-10 Score=109.70 Aligned_cols=120 Identities=13% Similarity=0.071 Sum_probs=89.2
Q ss_pred ccchHHHHHHHHHHhC---CCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccce
Q psy19 293 TTLKPTIAYNMVRLAS---PIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKV 368 (494)
Q Consensus 293 a~L~e~lAa~ll~la~---~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i 368 (494)
.|.+..+|+.++.... +++|.+|||+|||+|+++..+|.. .+...|+|+|+++.+++.....++.. .++
T Consensus 55 ~~~~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r-------~nv 127 (232)
T 3id6_C 55 NAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR-------PNI 127 (232)
T ss_dssp CTTTCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC-------TTE
T ss_pred chHHHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-------CCe
Confidence 5678899999887654 789999999999999999888865 45679999999999986665554422 246
Q ss_pred eeeeeccccccC---CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 369 SPLVCNVRQLCF---KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 369 ~~~~~Da~~l~~---~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
.++++|+..... ..++||+|++|.|.. +.. ..++..+.++|||| |++++..
T Consensus 128 ~~i~~Da~~~~~~~~~~~~~D~I~~d~a~~-------~~~---~il~~~~~~~LkpG-G~lvisi 181 (232)
T 3id6_C 128 FPLLADARFPQSYKSVVENVDVLYVDIAQP-------DQT---DIAIYNAKFFLKVN-GDMLLVI 181 (232)
T ss_dssp EEEECCTTCGGGTTTTCCCEEEEEECCCCT-------THH---HHHHHHHHHHEEEE-EEEEEEE
T ss_pred EEEEcccccchhhhccccceEEEEecCCCh-------hHH---HHHHHHHHHhCCCC-eEEEEEE
Confidence 788999986531 135899999998741 111 12233456699999 9998863
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-10 Score=114.83 Aligned_cols=125 Identities=13% Similarity=0.116 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeC-CHHHHHHHHHHHHhccCC-CCcc----ccee
Q psy19 296 KPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDI-NEKLVLKTQANVLHNSGN-LNRE----LKVS 369 (494)
Q Consensus 296 ~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Di-d~~al~~Ar~Nl~~~g~~-~~~~----~~i~ 369 (494)
.+.++..++......++.+|||+|||+|.+++.++... ...|+|+|+ ++.+++.|+.|+..|+.. .++. .++.
T Consensus 64 ~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~ 142 (281)
T 3bzb_A 64 ARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPK 142 (281)
T ss_dssp HHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCE
T ss_pred HHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeE
Confidence 55677777776655678899999999999999988863 248999999 899999999999433210 0111 2456
Q ss_pred eeeecccc----cc--CCCCCeeEEEE-cCCCccccCCccchHHHHHHHHHHHhhccc---C--CCcEEEEEec
Q psy19 370 PLVCNVRQ----LC--FKPACVDGIVT-DLPFGKRVGSKSNNFLLYRLFLIEIGKIVR---P--QIGRAILLTS 431 (494)
Q Consensus 370 ~~~~Da~~----l~--~~~~~~D~IVt-NPPYG~r~~~~~~~~~ly~~fL~~l~rvLk---p--g~G~lvllt~ 431 (494)
+...|..+ +. +..++||+||+ |++|... + +..+++.+.++|+ | | |+++++..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~-----~----~~~ll~~l~~~Lk~~~p~~g-G~l~v~~~ 206 (281)
T 3bzb_A 143 VVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQ-----A----HDALLRSVKMLLALPANDPT-AVALVTFT 206 (281)
T ss_dssp EEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGG-----G----HHHHHHHHHHHBCCTTTCTT-CEEEEEEC
T ss_pred EEEecCCCccHHHHhhccCCCCCEEEEeCcccChH-----H----HHHHHHHHHHHhcccCCCCC-CEEEEEEE
Confidence 66555433 21 03468999987 8877521 2 4566778999999 9 8 98877644
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=3.3e-10 Score=115.98 Aligned_cols=117 Identities=12% Similarity=0.003 Sum_probs=92.1
Q ss_pred HHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC
Q psy19 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380 (494)
Q Consensus 301 a~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~ 380 (494)
..++....+.++.+|||+|||+|.+++.++..+|+..++|+|+ +.+++.|++|+...++ ..++.+.++|+.+ ++
T Consensus 172 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~-~~ 245 (374)
T 1qzz_A 172 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGL----ADRVTVAEGDFFK-PL 245 (374)
T ss_dssp HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC----TTTEEEEECCTTS-CC
T ss_pred HHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCC----CCceEEEeCCCCC-cC
Confidence 3455555677889999999999999999999888889999999 9999999999987754 4468899999976 34
Q ss_pred CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+ ..||+|+++..+.. .. ..-...+++++.++|+|| |+++++..
T Consensus 246 ~-~~~D~v~~~~vl~~-~~-----~~~~~~~l~~~~~~L~pg-G~l~i~e~ 288 (374)
T 1qzz_A 246 P-VTADVVLLSFVLLN-WS-----DEDALTILRGCVRALEPG-GRLLVLDR 288 (374)
T ss_dssp S-CCEEEEEEESCGGG-SC-----HHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred C-CCCCEEEEeccccC-CC-----HHHHHHHHHHHHHhcCCC-cEEEEEec
Confidence 3 34999999765432 11 112346788899999999 99887644
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=5.1e-11 Score=107.00 Aligned_cols=108 Identities=14% Similarity=0.069 Sum_probs=81.7
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-------
Q psy19 308 SPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC------- 379 (494)
Q Consensus 308 ~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~------- 379 (494)
...++.+|||+|||+|.+++.++.. .++..++|+|+++ ++.. .++.+.++|+.+.+
T Consensus 19 ~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~---------------~~~~~~~~d~~~~~~~~~~~~ 82 (180)
T 1ej0_A 19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI---------------VGVDFLQGDFRDELVMKALLE 82 (180)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC---------------TTEEEEESCTTSHHHHHHHHH
T ss_pred CCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc---------------CcEEEEEcccccchhhhhhhc
Confidence 3678889999999999999999887 3668999999999 6432 23578889998765
Q ss_pred -CCCCCeeEEEEcCCCccccCCc---cchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 380 -FKPACVDGIVTDLPFGKRVGSK---SNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 380 -~~~~~~D~IVtNPPYG~r~~~~---~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+++++||+|++|+|+....... .....++..+++++.++|+|| |.+++.+..
T Consensus 83 ~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~~ 138 (180)
T 1ej0_A 83 RVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPG-GSFVVKVFQ 138 (180)
T ss_dssp HHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEEES
T ss_pred cCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCC-cEEEEEEec
Confidence 5567899999999975321110 111223468889999999999 999886654
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.3e-10 Score=109.17 Aligned_cols=124 Identities=15% Similarity=0.159 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccc
Q psy19 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVR 376 (494)
Q Consensus 297 e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~ 376 (494)
..+...++... .++.+|||+|||+|.+++.++.. ..++|+|+++.+++.|++++...+ ..+.+.++|+.
T Consensus 21 ~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~ 89 (243)
T 3d2l_A 21 PEWVAWVLEQV--EPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETN------RHVDFWVQDMR 89 (243)
T ss_dssp HHHHHHHHHHS--CTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTT------CCCEEEECCGG
T ss_pred HHHHHHHHHHc--CCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcC------CceEEEEcChh
Confidence 34555555554 35689999999999999988765 689999999999999999998654 23678999999
Q ss_pred cccCCCCCeeEEEEcC-CCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHH
Q psy19 377 QLCFKPACVDGIVTDL-PFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQ 438 (494)
Q Consensus 377 ~l~~~~~~~D~IVtNP-PYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~ 438 (494)
+++++ ++||+|+++. .+. .+.. ..-...+++++.++|+|| |++++-+++...+..
T Consensus 90 ~~~~~-~~fD~v~~~~~~~~-~~~~----~~~~~~~l~~~~~~L~pg-G~l~~~~~~~~~~~~ 145 (243)
T 3d2l_A 90 ELELP-EPVDAITILCDSLN-YLQT----EADVKQTFDSAARLLTDG-GKLLFDVHSPYKMET 145 (243)
T ss_dssp GCCCS-SCEEEEEECTTGGG-GCCS----HHHHHHHHHHHHHHEEEE-EEEEEEEECHHHHHT
T ss_pred hcCCC-CCcCEEEEeCCchh-hcCC----HHHHHHHHHHHHHhcCCC-eEEEEEcCCHHHHHH
Confidence 88765 7899999975 332 1211 122456778899999999 999988887754433
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.20 E-value=4.3e-11 Score=116.76 Aligned_cols=117 Identities=20% Similarity=0.257 Sum_probs=91.0
Q ss_pred cchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
++...++..+..... .++.+|||+|||+|.++..++..+++..++|+|+++.+++.|+++.. .+.+..+
T Consensus 69 ~~~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----------~~~~~~~ 137 (269)
T 1p91_A 69 PLRDAIVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP----------QVTFCVA 137 (269)
T ss_dssp HHHHHHHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT----------TSEEEEC
T ss_pred HHHHHHHHHHHHhcC-CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCC----------CcEEEEc
Confidence 344555554444332 46789999999999999999988777899999999999999988742 2468889
Q ss_pred ccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHH
Q psy19 374 NVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLI 437 (494)
Q Consensus 374 Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~ 437 (494)
|+..+++.+++||+|+++.+ . .+++++.++|+|| |+++++++....+.
T Consensus 138 d~~~~~~~~~~fD~v~~~~~-------~--------~~l~~~~~~L~pg-G~l~~~~~~~~~~~ 185 (269)
T 1p91_A 138 SSHRLPFSDTSMDAIIRIYA-------P--------CKAEELARVVKPG-GWVITATPGPRHLM 185 (269)
T ss_dssp CTTSCSBCTTCEEEEEEESC-------C--------CCHHHHHHHEEEE-EEEEEEEECTTTTH
T ss_pred chhhCCCCCCceeEEEEeCC-------h--------hhHHHHHHhcCCC-cEEEEEEcCHHHHH
Confidence 99888877789999999643 1 1345788999999 99999988765443
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=5.7e-10 Score=114.03 Aligned_cols=118 Identities=11% Similarity=0.058 Sum_probs=94.9
Q ss_pred HHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc
Q psy19 299 IAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378 (494)
Q Consensus 299 lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l 378 (494)
.+..++....+.++.+|||+|||+|.+++.++..+|+..++|+|+ +.+++.|++|+...++ ..++.+..+|+.+.
T Consensus 178 ~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~ 252 (359)
T 1x19_A 178 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV----ADRMRGIAVDIYKE 252 (359)
T ss_dssp HHHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTC----TTTEEEEECCTTTS
T ss_pred hHHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCC----CCCEEEEeCccccC
Confidence 445666677778889999999999999999999998899999999 9999999999997654 44689999999987
Q ss_pred cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 379 CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 379 ~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+++. .|+|++.-.+.. .. .+....+++++.++|+|| |+++++.
T Consensus 253 ~~~~--~D~v~~~~vlh~-~~-----d~~~~~~l~~~~~~L~pg-G~l~i~e 295 (359)
T 1x19_A 253 SYPE--ADAVLFCRILYS-AN-----EQLSTIMCKKAFDAMRSG-GRLLILD 295 (359)
T ss_dssp CCCC--CSEEEEESCGGG-SC-----HHHHHHHHHHHHTTCCTT-CEEEEEE
T ss_pred CCCC--CCEEEEechhcc-CC-----HHHHHHHHHHHHHhcCCC-CEEEEEe
Confidence 6653 399999654331 11 123557888999999999 9998765
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=9.6e-11 Score=118.90 Aligned_cols=113 Identities=16% Similarity=0.112 Sum_probs=86.2
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCc-ccceeeeeeccccc-cCCCCCeeEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNR-ELKVSPLVCNVRQL-CFKPACVDGI 388 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~-~~~i~~~~~Da~~l-~~~~~~~D~I 388 (494)
.+.+|||+|||+|.++++++...+...++++|+|+.+++.|++|+.... .+. ..+++++++|+.+. +..+++||+|
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~--~~~~~~~v~~~~~D~~~~l~~~~~~fDvI 193 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNIS--CGYEDKRVNVFIEDASKFLENVTNTYDVI 193 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTS--GGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhc--cccCCCcEEEEEccHHHHHhhcCCCceEE
Confidence 4579999999999999999887667899999999999999999987521 011 24688999998774 3234689999
Q ss_pred EEcCCCccccCCccchHHHH-HHHHHHHhhcccCCCcEEEEEec
Q psy19 389 VTDLPFGKRVGSKSNNFLLY-RLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly-~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
|+|+|-.. +.. ..+| ..|++.+.++|+|| |.+++-+.
T Consensus 194 i~d~~~p~--~~~---~~l~~~~~l~~~~~~Lkpg-G~lv~~~~ 231 (321)
T 2pt6_A 194 IVDSSDPI--GPA---ETLFNQNFYEKIYNALKPN-GYCVAQCE 231 (321)
T ss_dssp EEECCCSS--SGG---GGGSSHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred EECCcCCC--Ccc---hhhhHHHHHHHHHHhcCCC-cEEEEEcC
Confidence 99994211 111 1234 57777899999999 99988654
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.6e-11 Score=115.79 Aligned_cols=121 Identities=17% Similarity=0.141 Sum_probs=96.6
Q ss_pred cchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
.+.+..++.|..++...++.+|||+|||+|.+++.++...+ +..++|+|+++.+++.|++|+..+|+ ..++.+.+
T Consensus 43 ~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~----~~~v~~~~ 118 (239)
T 2hnk_A 43 QISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGL----ENKIFLKL 118 (239)
T ss_dssp SCCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC----GGGEEEEE
T ss_pred ccCHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCCEEEEE
Confidence 46677777777777767788999999999999999998866 67999999999999999999997764 44578999
Q ss_pred eccccc-c--------------CCC--CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 373 CNVRQL-C--------------FKP--ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 373 ~Da~~l-~--------------~~~--~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+|+.+. + +++ ++||+|++|.+ ... |..+++.+.++|+|| |.+++..
T Consensus 119 ~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~-------~~~----~~~~l~~~~~~L~pg-G~lv~~~ 181 (239)
T 2hnk_A 119 GSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDAD-------KEN----YPNYYPLILKLLKPG-GLLIADN 181 (239)
T ss_dssp SCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSC-------GGG----HHHHHHHHHHHEEEE-EEEEEEC
T ss_pred CCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCC-------HHH----HHHHHHHHHHHcCCC-eEEEEEc
Confidence 998663 2 111 68999999843 112 456777899999999 9988754
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.5e-11 Score=127.06 Aligned_cols=118 Identities=13% Similarity=0.160 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecc
Q psy19 296 KPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNV 375 (494)
Q Consensus 296 ~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da 375 (494)
.+.+..+++......++.+|||+|||+|.+++.+|.. +...|+|+|+++ +++.|++|+..+|+ ..++.++++|+
T Consensus 143 t~~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~-~~~~V~gvD~s~-~l~~A~~~~~~~gl----~~~v~~~~~d~ 216 (480)
T 3b3j_A 143 TGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNNL----TDRIVVIPGKV 216 (480)
T ss_dssp HHHHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHT-TCSEEEEEECHH-HHHHHHHHHHHTTC----TTTEEEEESCT
T ss_pred HHHHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHc-CCCEEEEEEcHH-HHHHHHHHHHHcCC----CCcEEEEECch
Confidence 4455666666555567889999999999999988874 456999999999 99999999998765 45689999999
Q ss_pred ccccCCCCCeeEEEEcCC-CccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 376 RQLCFKPACVDGIVTDLP-FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 376 ~~l~~~~~~~D~IVtNPP-YG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
.+++++ ++||+||+||| |... . .. +..++..+.++|+|| |.+++
T Consensus 217 ~~~~~~-~~fD~Ivs~~~~~~~~--~-e~----~~~~l~~~~~~Lkpg-G~li~ 261 (480)
T 3b3j_A 217 EEVSLP-EQVDIIISEPMGYMLF--N-ER----MLESYLHAKKYLKPS-GNMFP 261 (480)
T ss_dssp TTCCCS-SCEEEEECCCCHHHHT--C-HH----HHHHHHHGGGGEEEE-EEEES
T ss_pred hhCccC-CCeEEEEEeCchHhcC--c-HH----HHHHHHHHHHhcCCC-CEEEE
Confidence 987665 58999999998 3211 1 11 234455789999999 98764
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.18 E-value=5.8e-11 Score=116.79 Aligned_cols=92 Identities=15% Similarity=0.169 Sum_probs=79.8
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
..+.++..++..+++.++.+|||+|||+|.+...++.. +..++|+|+|+.+++.+++|+.. ..+++++++|
T Consensus 13 ~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avEid~~~~~~~~~~~~~-------~~~v~~i~~D 83 (255)
T 3tqs_A 13 HDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE--CDNLALVEIDRDLVAFLQKKYNQ-------QKNITIYQND 83 (255)
T ss_dssp CCHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT--SSEEEEEECCHHHHHHHHHHHTT-------CTTEEEEESC
T ss_pred cCHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHhh-------CCCcEEEEcc
Confidence 57889999999999999999999999999999998877 57999999999999999999874 1357899999
Q ss_pred cccccCCC----CCeeEEEEcCCCcc
Q psy19 375 VRQLCFKP----ACVDGIVTDLPFGK 396 (494)
Q Consensus 375 a~~l~~~~----~~~D~IVtNPPYG~ 396 (494)
+.++++++ +.|| ||+||||..
T Consensus 84 ~~~~~~~~~~~~~~~~-vv~NlPY~i 108 (255)
T 3tqs_A 84 ALQFDFSSVKTDKPLR-VVGNLPYNI 108 (255)
T ss_dssp TTTCCGGGSCCSSCEE-EEEECCHHH
T ss_pred hHhCCHHHhccCCCeE-EEecCCccc
Confidence 99986542 4687 999999964
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=5e-11 Score=119.69 Aligned_cols=95 Identities=14% Similarity=0.108 Sum_probs=84.1
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
.-+.+.+++.|+..+.+.++++|||+|||+|.+...++.. +..|+|+|+|+.+++.+++++... .++.+++
T Consensus 32 fL~d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~-------~~v~vi~ 102 (295)
T 3gru_A 32 FLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELY-------NNIEIIW 102 (295)
T ss_dssp EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHC-------SSEEEEE
T ss_pred ccCCHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccC-------CCeEEEE
Confidence 3467899999999999999999999999999999999887 679999999999999999998722 3478999
Q ss_pred eccccccCCCCCeeEEEEcCCCcc
Q psy19 373 CNVRQLCFKPACVDGIVTDLPFGK 396 (494)
Q Consensus 373 ~Da~~l~~~~~~~D~IVtNPPYG~ 396 (494)
+|+.++++++..||.||+|+||..
T Consensus 103 gD~l~~~~~~~~fD~Iv~NlPy~i 126 (295)
T 3gru_A 103 GDALKVDLNKLDFNKVVANLPYQI 126 (295)
T ss_dssp SCTTTSCGGGSCCSEEEEECCGGG
T ss_pred CchhhCCcccCCccEEEEeCcccc
Confidence 999998776668999999999974
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.1e-10 Score=107.48 Aligned_cols=108 Identities=12% Similarity=-0.014 Sum_probs=85.3
Q ss_pred HhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCe
Q psy19 306 LASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACV 385 (494)
Q Consensus 306 la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~ 385 (494)
+....++.+|||+|||+|.++..++.. +..++|+|+++.+++.|+. .+. .++.+.++|+.++ +++++|
T Consensus 41 l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~----~~~-----~~~~~~~~d~~~~-~~~~~~ 108 (218)
T 3ou2_A 41 LRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGR----HGL-----DNVEFRQQDLFDW-TPDRQW 108 (218)
T ss_dssp HTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGG----GCC-----TTEEEEECCTTSC-CCSSCE
T ss_pred HhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHh----cCC-----CCeEEEecccccC-CCCCce
Confidence 344667889999999999999998887 6799999999999999998 221 3478999999887 566899
Q ss_pred eEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 386 DGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 386 D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
|+|+++--+.. +. ...+..+++++.++|+|| |.+++.+..
T Consensus 109 D~v~~~~~l~~-~~-----~~~~~~~l~~~~~~L~pg-G~l~~~~~~ 148 (218)
T 3ou2_A 109 DAVFFAHWLAH-VP-----DDRFEAFWESVRSAVAPG-GVVEFVDVT 148 (218)
T ss_dssp EEEEEESCGGG-SC-----HHHHHHHHHHHHHHEEEE-EEEEEEEEC
T ss_pred eEEEEechhhc-CC-----HHHHHHHHHHHHHHcCCC-eEEEEEeCC
Confidence 99999753321 11 123467888999999999 999887653
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-10 Score=113.26 Aligned_cols=118 Identities=10% Similarity=0.038 Sum_probs=90.0
Q ss_pred HHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHH------HHHHHHHHHHhccCCCCcccceeeee
Q psy19 300 AYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEK------LVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 300 Aa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~------al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
...++....+.++.+|||+|||+|.+++.++... +...++|+|+++. +++.|++++...++ ..++.+.+
T Consensus 32 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~----~~~v~~~~ 107 (275)
T 3bkx_A 32 RLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPL----GDRLTVHF 107 (275)
T ss_dssp HHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTT----GGGEEEEC
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCC----CCceEEEE
Confidence 3445566677889999999999999999998874 5689999999997 99999999986653 45678999
Q ss_pred ec---cccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 373 CN---VRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 373 ~D---a~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+| ...+++++++||+|+++.++.. +.. . ..+++.+.++++|| |++++..
T Consensus 108 ~d~~~~~~~~~~~~~fD~v~~~~~l~~-~~~---~----~~~~~~~~~l~~~g-G~l~~~~ 159 (275)
T 3bkx_A 108 NTNLSDDLGPIADQHFDRVVLAHSLWY-FAS---A----NALALLFKNMAAVC-DHVDVAE 159 (275)
T ss_dssp SCCTTTCCGGGTTCCCSEEEEESCGGG-SSC---H----HHHHHHHHHHTTTC-SEEEEEE
T ss_pred CChhhhccCCCCCCCEEEEEEccchhh-CCC---H----HHHHHHHHHHhCCC-CEEEEEE
Confidence 98 4455666789999999988643 222 1 12444566666778 9988864
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.5e-10 Score=114.29 Aligned_cols=141 Identities=17% Similarity=0.174 Sum_probs=98.3
Q ss_pred chHHHHHHHHHHhC--CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCC--Ccccceee
Q psy19 295 LKPTIAYNMVRLAS--PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNL--NRELKVSP 370 (494)
Q Consensus 295 L~e~lAa~ll~la~--~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~--~~~~~i~~ 370 (494)
++..+...++.... ..++.+|||+|||+|.++..++.. +...++|+|+++.+++.|+.+....+... .....+.+
T Consensus 16 ~k~~l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 94 (313)
T 3bgv_A 16 MKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEF 94 (313)
T ss_dssp HHHHHHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEE
T ss_pred HHHHHHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEE
Confidence 34445555544432 236789999999999999888764 46799999999999999999987542100 01235789
Q ss_pred eeecccccc----CC--CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHH
Q psy19 371 LVCNVRQLC----FK--PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALH 441 (494)
Q Consensus 371 ~~~Da~~l~----~~--~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~ 441 (494)
+++|+..++ ++ +++||+|+++..+..-... ..-...++.++.++|+|| |.+++.+++...+...+.
T Consensus 95 ~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~----~~~~~~~l~~~~~~Lkpg-G~li~~~~~~~~l~~~~~ 166 (313)
T 3bgv_A 95 ITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFES----YEQADMMLRNACERLSPG-GYFIGTTPNSFELIRRLE 166 (313)
T ss_dssp EECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGS----HHHHHHHHHHHHTTEEEE-EEEEEEEECHHHHHHHHT
T ss_pred EEecccccchhhhcccCCCCEEEEEEecchhhccCC----HHHHHHHHHHHHHHhCCC-cEEEEecCChHHHHHHHH
Confidence 999998875 43 3589999997643321111 122457888999999999 999999998765555444
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.8e-10 Score=112.12 Aligned_cols=113 Identities=14% Similarity=0.068 Sum_probs=87.2
Q ss_pred HHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc
Q psy19 299 IAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378 (494)
Q Consensus 299 lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l 378 (494)
+...+..+.. ++.+|||+|||+|.++..++.. +..++|+|+++.+++.|+++.. + .+.++|+..+
T Consensus 44 ~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~--~---------~~~~~d~~~~ 108 (260)
T 2avn_A 44 IGSFLEEYLK--NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV--K---------NVVEAKAEDL 108 (260)
T ss_dssp HHHHHHHHCC--SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC--S---------CEEECCTTSC
T ss_pred HHHHHHHhcC--CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcC--C---------CEEECcHHHC
Confidence 3444444433 6789999999999999998876 6799999999999999998754 0 2778899988
Q ss_pred cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHH
Q psy19 379 CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRK 434 (494)
Q Consensus 379 ~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~ 434 (494)
++++++||+|+++.+...... + ...+++++.++|+|| |++++.+++..
T Consensus 109 ~~~~~~fD~v~~~~~~~~~~~---~----~~~~l~~~~~~Lkpg-G~l~~~~~~~~ 156 (260)
T 2avn_A 109 PFPSGAFEAVLALGDVLSYVE---N----KDKAFSEIRRVLVPD-GLLIATVDNFY 156 (260)
T ss_dssp CSCTTCEEEEEECSSHHHHCS---C----HHHHHHHHHHHEEEE-EEEEEEEEBHH
T ss_pred CCCCCCEEEEEEcchhhhccc---c----HHHHHHHHHHHcCCC-eEEEEEeCChH
Confidence 877789999999654221111 1 346777899999999 99999887753
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.15 E-value=9.4e-11 Score=115.45 Aligned_cols=85 Identities=9% Similarity=-0.026 Sum_probs=68.9
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCH-------HHHHHHHHHHHhccCCCCcccceeeeeeccccc-c
Q psy19 308 SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINE-------KLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-C 379 (494)
Q Consensus 308 ~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~-------~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-~ 379 (494)
...++.+|||+|||+|.+++.+|.. +..|+|+|+++ .+++.|+.|++.+++ ..++.++++|+.++ +
T Consensus 80 ~~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~----~~ri~~~~~d~~~~l~ 153 (258)
T 2r6z_A 80 NHTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDT----AARINLHFGNAAEQMP 153 (258)
T ss_dssp TGGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHH----HTTEEEEESCHHHHHH
T ss_pred CcCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCC----ccCeEEEECCHHHHHH
Confidence 4556789999999999999999986 67999999999 999999999987764 34578999999875 3
Q ss_pred -CCC--CCeeEEEEcCCCcccc
Q psy19 380 -FKP--ACVDGIVTDLPFGKRV 398 (494)
Q Consensus 380 -~~~--~~~D~IVtNPPYG~r~ 398 (494)
+++ ++||+|++||||....
T Consensus 154 ~~~~~~~~fD~V~~dP~~~~~~ 175 (258)
T 2r6z_A 154 ALVKTQGKPDIVYLDPMYPERR 175 (258)
T ss_dssp HHHHHHCCCSEEEECCCC----
T ss_pred hhhccCCCccEEEECCCCCCcc
Confidence 333 5899999999997643
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=9.7e-11 Score=117.97 Aligned_cols=115 Identities=14% Similarity=0.003 Sum_probs=85.8
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHh--ccCCCCcccceeeeeeccccc-cCCCCC
Q psy19 308 SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH--NSGNLNRELKVSPLVCNVRQL-CFKPAC 384 (494)
Q Consensus 308 ~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~--~g~~~~~~~~i~~~~~Da~~l-~~~~~~ 384 (494)
....+.+|||+|||+|.++++++...+...++++|+|+.+++.|++|+.. .++. ..+++++.+|+.+. +..+++
T Consensus 92 ~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~---~~rv~v~~~Da~~~l~~~~~~ 168 (304)
T 2o07_A 92 SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYS---SSKLTLHVGDGFEFMKQNQDA 168 (304)
T ss_dssp TSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG---CTTEEEEESCHHHHHHTCSSC
T ss_pred hCCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccC---CCcEEEEECcHHHHHhhCCCC
Confidence 33456799999999999999999876678999999999999999999865 2220 34678999999774 334578
Q ss_pred eeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 385 VDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 385 ~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
||+|++|+|..... . ....+..|++.+.++|+|| |.+++-+
T Consensus 169 fD~Ii~d~~~~~~~--~--~~l~~~~~l~~~~~~Lkpg-G~lv~~~ 209 (304)
T 2o07_A 169 FDVIITDSSDPMGP--A--ESLFKESYYQLMKTALKED-GVLCCQG 209 (304)
T ss_dssp EEEEEEECC---------------CHHHHHHHHHEEEE-EEEEEEE
T ss_pred ceEEEECCCCCCCc--c--hhhhHHHHHHHHHhccCCC-eEEEEec
Confidence 99999999864321 1 1122457788999999999 9988865
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.7e-10 Score=113.62 Aligned_cols=122 Identities=11% Similarity=0.075 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhCC--CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 297 PTIAYNMVRLASP--IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 297 e~lAa~ll~la~~--~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
...+..++....+ .++.+|||+|||+|.+++.++..+|+..++|+|++ .+++.|++++...++ ..++.+..+|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~----~~~v~~~~~d 223 (335)
T 2r3s_A 149 ANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGV----ASRYHTIAGS 223 (335)
T ss_dssp HHHHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTC----GGGEEEEESC
T ss_pred hhhHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCC----CcceEEEecc
Confidence 3445566666676 78899999999999999999998888999999999 999999999987754 4568999999
Q ss_pred cccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 375 VRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 375 a~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+.+.+++. .||+|++.-.... .. ..-...+++++.++|+|| |+++++..
T Consensus 224 ~~~~~~~~-~~D~v~~~~~l~~-~~-----~~~~~~~l~~~~~~L~pg-G~l~i~e~ 272 (335)
T 2r3s_A 224 AFEVDYGN-DYDLVLLPNFLHH-FD-----VATCEQLLRKIKTALAVE-GKVIVFDF 272 (335)
T ss_dssp TTTSCCCS-CEEEEEEESCGGG-SC-----HHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred cccCCCCC-CCcEEEEcchhcc-CC-----HHHHHHHHHHHHHhCCCC-cEEEEEee
Confidence 98876653 4999999544321 11 122457788999999999 99888643
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-10 Score=110.16 Aligned_cols=125 Identities=13% Similarity=0.074 Sum_probs=91.3
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
+.+..+.+...++.... .++.+|||+|||+|.+++.++.. +..++|+|+++.+++.|++|. .++.++
T Consensus 30 ~~~~~~~l~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~----------~~~~~~ 96 (226)
T 3m33_A 30 SGPDPELTFDLWLSRLL-TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANA----------PHADVY 96 (226)
T ss_dssp SSSCTTHHHHHHHHHHC-CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHC----------TTSEEE
T ss_pred CCCCHHHHHHHHHHhcC-CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhC----------CCceEE
Confidence 44444555555544322 56789999999999999999887 679999999999999999981 135789
Q ss_pred eecc-ccccCC-CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec--CHHHHHHHHHhcc
Q psy19 372 VCNV-RQLCFK-PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS--DRKHLIQALHITS 444 (494)
Q Consensus 372 ~~Da-~~l~~~-~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~--~~~~l~~~l~~~~ 444 (494)
++|+ ..+|++ +++||+|++++.. ..+++++.++|+|| |+++.... ....+...+...|
T Consensus 97 ~~d~~~~~~~~~~~~fD~v~~~~~~--------------~~~l~~~~~~Lkpg-G~l~~~~~~~~~~~~~~~l~~~G 158 (226)
T 3m33_A 97 EWNGKGELPAGLGAPFGLIVSRRGP--------------TSVILRLPELAAPD-AHFLYVGPRLNVPEVPERLAAVG 158 (226)
T ss_dssp ECCSCSSCCTTCCCCEEEEEEESCC--------------SGGGGGHHHHEEEE-EEEEEEESSSCCTHHHHHHHHTT
T ss_pred EcchhhccCCcCCCCEEEEEeCCCH--------------HHHHHHHHHHcCCC-cEEEEeCCcCCHHHHHHHHHHCC
Confidence 9999 456766 6899999998421 13445688899999 99884432 2234666676655
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.7e-10 Score=115.26 Aligned_cols=113 Identities=14% Similarity=0.005 Sum_probs=83.6
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCc-ccceeeeeeccccc-cCCCCCeeEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNR-ELKVSPLVCNVRQL-CFKPACVDGI 388 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~-~~~i~~~~~Da~~l-~~~~~~~D~I 388 (494)
.+.+|||+|||+|.++++++...+...++++|+|+.+++.|++|+..... ++ ..+++++.+|+... +...++||+|
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~--~~~~~rv~~~~~D~~~~l~~~~~~fD~I 185 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSC--GFSHPKLDLFCGDGFEFLKNHKNEFDVI 185 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSG--GGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhcc--ccCCCCEEEEEChHHHHHHhcCCCceEE
Confidence 45799999999999999999876778999999999999999999865310 11 34688999999874 3334689999
Q ss_pred EEcCCCccccCCccchHHHH-HHHHHHHhhcccCCCcEEEEEec
Q psy19 389 VTDLPFGKRVGSKSNNFLLY-RLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly-~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
++|+|... +. ...+| ..|++.+.++|+|| |.+++-+.
T Consensus 186 i~d~~~~~--~~---~~~l~t~~~l~~~~~~Lkpg-G~lv~~~~ 223 (314)
T 2b2c_A 186 ITDSSDPV--GP---AESLFGQSYYELLRDALKED-GILSSQGE 223 (314)
T ss_dssp EECCC------------------HHHHHHHHEEEE-EEEEEECC
T ss_pred EEcCCCCC--Cc---chhhhHHHHHHHHHhhcCCC-eEEEEECC
Confidence 99996431 11 12345 67888999999999 99888653
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.5e-10 Score=114.37 Aligned_cols=113 Identities=9% Similarity=0.004 Sum_probs=84.7
Q ss_pred HHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc
Q psy19 298 TIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ 377 (494)
Q Consensus 298 ~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~ 377 (494)
..+..++......++.+|||+|||+|.+++.+|.. +..|+|+|+++.|++.|++|+..+ +++.|+.+
T Consensus 32 ~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~-----------~v~~~~~~ 98 (261)
T 3iv6_A 32 SDRENDIFLENIVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADR-----------CVTIDLLD 98 (261)
T ss_dssp CHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSS-----------CCEEEECC
T ss_pred HHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhc-----------cceeeeee
Confidence 45566777778889999999999999999999987 679999999999999999998643 23344433
Q ss_pred ccC-----CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 378 LCF-----KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 378 l~~-----~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
++. .+++||+|++|..+.. +. . .-...+++++.++| || |++++-+.
T Consensus 99 ~~~~~~~~~~~~fD~Vv~~~~l~~-~~-~----~~~~~~l~~l~~lL-PG-G~l~lS~~ 149 (261)
T 3iv6_A 99 ITAEIPKELAGHFDFVLNDRLINR-FT-T----EEARRACLGMLSLV-GS-GTVRASVK 149 (261)
T ss_dssp TTSCCCGGGTTCCSEEEEESCGGG-SC-H----HHHHHHHHHHHHHH-TT-SEEEEEEE
T ss_pred cccccccccCCCccEEEEhhhhHh-CC-H----HHHHHHHHHHHHhC-cC-cEEEEEec
Confidence 322 1368999999976532 11 1 12345677899999 99 99887654
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.5e-11 Score=123.19 Aligned_cols=105 Identities=20% Similarity=0.214 Sum_probs=82.5
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
.+|.+|||+|||||.+++.||..+. .+|+|+|.++ +++.|+++++.+|+ .++|.++++|+.++.++ +.+|+||
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~aGA-~~V~ave~s~-~~~~a~~~~~~n~~----~~~i~~i~~~~~~~~lp-e~~Dviv 154 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQAGA-RRVYAVEASA-IWQQAREVVRFNGL----EDRVHVLPGPVETVELP-EQVDAIV 154 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECST-THHHHHHHHHHTTC----TTTEEEEESCTTTCCCS-SCEEEEE
T ss_pred cCCCEEEEeCCCccHHHHHHHHhCC-CEEEEEeChH-HHHHHHHHHHHcCC----CceEEEEeeeeeeecCC-ccccEEE
Confidence 3688999999999999999998742 5799999996 88999999999875 56789999999998776 6899999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEE
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAI 427 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lv 427 (494)
+++- |..+.... ++..++....++|+|| |.++
T Consensus 155 sE~~-~~~l~~e~----~l~~~l~a~~r~Lkp~-G~~i 186 (376)
T 4hc4_A 155 SEWM-GYGLLHES----MLSSVLHARTKWLKEG-GLLL 186 (376)
T ss_dssp CCCC-BTTBTTTC----SHHHHHHHHHHHEEEE-EEEE
T ss_pred eecc-cccccccc----hhhhHHHHHHhhCCCC-ceEC
Confidence 9863 32222222 2445556788999998 7543
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-10 Score=118.34 Aligned_cols=115 Identities=14% Similarity=0.100 Sum_probs=87.9
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhc--cCCCCcccceeeeeeccccc-c-CCCC
Q psy19 308 SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN--SGNLNRELKVSPLVCNVRQL-C-FKPA 383 (494)
Q Consensus 308 ~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~--g~~~~~~~~i~~~~~Da~~l-~-~~~~ 383 (494)
....+.+|||+|||+|.++++++...+...|+++|+|+.+++.|++|+... ++ -..+++++++|+.+. + ..++
T Consensus 117 ~~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl---~~~rv~~~~~D~~~~l~~~~~~ 193 (334)
T 1xj5_A 117 SIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGY---EDPRVNLVIGDGVAFLKNAAEG 193 (334)
T ss_dssp TSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG---GSTTEEEEESCHHHHHHTSCTT
T ss_pred hCCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcccc---CCCcEEEEECCHHHHHHhccCC
Confidence 334567999999999999999998766789999999999999999998753 22 024688999998875 2 3346
Q ss_pred CeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 384 CVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 384 ~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+||+|++|++-.. +.... ..+..|++.+.++|+|| |.+++-+
T Consensus 194 ~fDlIi~d~~~p~--~~~~~--l~~~~~l~~~~~~Lkpg-G~lv~~~ 235 (334)
T 1xj5_A 194 SYDAVIVDSSDPI--GPAKE--LFEKPFFQSVARALRPG-GVVCTQA 235 (334)
T ss_dssp CEEEEEECCCCTT--SGGGG--GGSHHHHHHHHHHEEEE-EEEEEEC
T ss_pred CccEEEECCCCcc--Ccchh--hhHHHHHHHHHHhcCCC-cEEEEec
Confidence 8999999987321 11111 12467888999999999 9988853
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.14 E-value=2e-10 Score=116.25 Aligned_cols=125 Identities=18% Similarity=0.084 Sum_probs=92.0
Q ss_pred HHHHHHHHHH--hCCCC-CCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 297 PTIAYNMVRL--ASPIP-GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 297 e~lAa~ll~l--a~~~~-g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
+.|+..++.+ +.+.+ ..+|||+|||+|+++.+++..+|+.+++++|+|+.+++.|++++.... ..+++++.+
T Consensus 72 e~m~~~~~~l~~~~p~p~~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-----~~rv~v~~~ 146 (317)
T 3gjy_A 72 RWIATGARAFIDAHQDASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-----APRVKIRVD 146 (317)
T ss_dssp HHHHHHHHHHHHHHSCGGGCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-----TTTEEEEES
T ss_pred HHHHHHHHhhcccCCCCCCCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-----CCceEEEEC
Confidence 4455544432 22322 248999999999999999988888999999999999999999986421 346889999
Q ss_pred ccccc--cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 374 NVRQL--CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 374 Da~~l--~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
|+..+ .+.+++||+||+|.+.+..... .+ ....|++.+.++|+|| |.+++-+.
T Consensus 147 Da~~~l~~~~~~~fDvIi~D~~~~~~~~~--~L--~t~efl~~~~r~Lkpg-Gvlv~~~~ 201 (317)
T 3gjy_A 147 DARMVAESFTPASRDVIIRDVFAGAITPQ--NF--TTVEFFEHCHRGLAPG-GLYVANCG 201 (317)
T ss_dssp CHHHHHHTCCTTCEEEEEECCSTTSCCCG--GG--SBHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred cHHHHHhhccCCCCCEEEECCCCccccch--hh--hHHHHHHHHHHhcCCC-cEEEEEec
Confidence 99876 2345789999999765432221 11 0146677899999999 99887654
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-10 Score=111.60 Aligned_cols=117 Identities=12% Similarity=0.114 Sum_probs=88.9
Q ss_pred chHHHHHHHHHHhC-CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 295 LKPTIAYNMVRLAS-PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 295 L~e~lAa~ll~la~-~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
..+.+...+..... ..++.+|||+|||+|.++..++.. +..++|+|+++.+++.|+.+ +.+..+
T Consensus 24 ~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~-------------~~~~~~ 88 (240)
T 3dli_A 24 SRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK-------------FNVVKS 88 (240)
T ss_dssp CHHHHHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT-------------SEEECS
T ss_pred CHHHHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh-------------cceeec
Confidence 44555555554443 467789999999999999988887 67899999999999999876 257788
Q ss_pred ccccc--cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 374 NVRQL--CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 374 Da~~l--~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
|+.+. ++++++||+|+++--+.. +. ..+ +..+++++.++|+|| |++++.+++.
T Consensus 89 d~~~~~~~~~~~~fD~i~~~~~l~~-~~-~~~----~~~~l~~~~~~Lkpg-G~l~~~~~~~ 143 (240)
T 3dli_A 89 DAIEYLKSLPDKYLDGVMISHFVEH-LD-PER----LFELLSLCYSKMKYS-SYIVIESPNP 143 (240)
T ss_dssp CHHHHHHTSCTTCBSEEEEESCGGG-SC-GGG----HHHHHHHHHHHBCTT-CCEEEEEECT
T ss_pred cHHHHhhhcCCCCeeEEEECCchhh-CC-cHH----HHHHHHHHHHHcCCC-cEEEEEeCCc
Confidence 88775 667789999999644321 11 112 456777899999999 9999887754
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2.5e-10 Score=108.66 Aligned_cols=105 Identities=13% Similarity=0.146 Sum_probs=83.3
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEE
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGI 388 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~I 388 (494)
..++.+|||+|||+|.++..++.. +..++|+|+++.+++.|++++.. .+.+.++|+.++ +++++||+|
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~---------~v~~~~~d~~~~-~~~~~fD~v 107 (250)
T 2p7i_A 40 FFRPGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRLKD---------GITYIHSRFEDA-QLPRRYDNI 107 (250)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSCS---------CEEEEESCGGGC-CCSSCEEEE
T ss_pred hcCCCcEEEECCCCCHHHHHHHHh--CCcEEEEeCCHHHHHHHHHhhhC---------CeEEEEccHHHc-CcCCcccEE
Confidence 346778999999999999998877 45899999999999999988652 468899999887 355789999
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHHh-hcccCCCcEEEEEecCHH
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIG-KIVRPQIGRAILLTSDRK 434 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l~-rvLkpg~G~lvllt~~~~ 434 (494)
+++--.. .+ .+ ...+++++. ++|+|| |++++.+++..
T Consensus 108 ~~~~~l~-~~---~~----~~~~l~~~~~~~Lkpg-G~l~i~~~~~~ 145 (250)
T 2p7i_A 108 VLTHVLE-HI---DD----PVALLKRINDDWLAEG-GRLFLVCPNAN 145 (250)
T ss_dssp EEESCGG-GC---SS----HHHHHHHHHHTTEEEE-EEEEEEEECTT
T ss_pred EEhhHHH-hh---cC----HHHHHHHHHHHhcCCC-CEEEEEcCChH
Confidence 9964322 11 12 246778999 999999 99999887643
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=8.5e-10 Score=109.78 Aligned_cols=115 Identities=16% Similarity=0.104 Sum_probs=88.2
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCc-ccceeeeeeccccc-cCCCCCeeE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNR-ELKVSPLVCNVRQL-CFKPACVDG 387 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~-~~~i~~~~~Da~~l-~~~~~~~D~ 387 (494)
..+.+|||+|||+|.++.+++...+...++++|+|+.+++.|++++...+. +. ..+++++.+|+.+. +...++||+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~--~~~~~~v~~~~~D~~~~l~~~~~~fD~ 154 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISC--GYEDKRVNVFIEDASKFLENVTNTYDV 154 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSG--GGGSTTEEEEESCHHHHHHHCCSCEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhcc--ccCCCcEEEEECChHHHHHhCCCCceE
Confidence 456799999999999999998876678999999999999999999865321 11 24678999999874 222468999
Q ss_pred EEEcCCCccccCCccchHHHH-HHHHHHHhhcccCCCcEEEEEecC
Q psy19 388 IVTDLPFGKRVGSKSNNFLLY-RLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly-~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
|++|+|... +.. ..+| ..|++.+.++|+|| |.+++.+.+
T Consensus 155 Ii~d~~~~~--~~~---~~l~~~~~l~~~~~~L~pg-G~lv~~~~~ 194 (283)
T 2i7c_A 155 IIVDSSDPI--GPA---ETLFNQNFYEKIYNALKPN-GYCVAQCES 194 (283)
T ss_dssp EEEECCCTT--TGG---GGGSSHHHHHHHHHHEEEE-EEEEEECCC
T ss_pred EEEcCCCCC--Ccc---hhhhHHHHHHHHHHhcCCC-cEEEEECCC
Confidence 999987532 111 1233 56777899999999 999887553
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-09 Score=111.22 Aligned_cols=116 Identities=12% Similarity=0.016 Sum_probs=91.6
Q ss_pred HHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC
Q psy19 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380 (494)
Q Consensus 301 a~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~ 380 (494)
..++....+.++.+|||+|||+|.+++.++..+++..++++|+ +.+++.|++|+...++ ..++.+..+|+.+ ++
T Consensus 173 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~-~~ 246 (360)
T 1tw3_A 173 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGL----SDRVDVVEGDFFE-PL 246 (360)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTC----TTTEEEEECCTTS-CC
T ss_pred HHHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCC----CCceEEEeCCCCC-CC
Confidence 3455566777889999999999999999999888889999999 9999999999987764 3468899999876 34
Q ss_pred CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+ ..||+|+++..+.. .. ..-...+++++.++|+|| |+++++.
T Consensus 247 ~-~~~D~v~~~~vl~~-~~-----~~~~~~~l~~~~~~L~pg-G~l~i~e 288 (360)
T 1tw3_A 247 P-RKADAIILSFVLLN-WP-----DHDAVRILTRCAEALEPG-GRILIHE 288 (360)
T ss_dssp S-SCEEEEEEESCGGG-SC-----HHHHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred C-CCccEEEEcccccC-CC-----HHHHHHHHHHHHHhcCCC-cEEEEEE
Confidence 3 35999999765432 11 112346777899999999 9988864
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.1e-10 Score=109.48 Aligned_cols=122 Identities=17% Similarity=0.145 Sum_probs=91.2
Q ss_pred chHHHHHHHHHHh--CCCCCCEEEEEcCCcChHHHHHHhcCC------CCeEEEEeCCHHHHHHHHHHHHhccCCCCccc
Q psy19 295 LKPTIAYNMVRLA--SPIPGDVFLDPMCGGGTIPVECSLSYP------HTFFVCGDINEKLVLKTQANVLHNSGNLNREL 366 (494)
Q Consensus 295 L~e~lAa~ll~la--~~~~g~~VLDP~CGSGtilIEAA~~~~------~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~ 366 (494)
..|.+.+.++.+. ...++.+|||+|||+|.++..++...+ ...++|+|+++.+++.|++|+...+...-...
T Consensus 66 ~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~ 145 (227)
T 1r18_A 66 SAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSG 145 (227)
T ss_dssp CCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCC
Confidence 4566666777766 467889999999999999998887543 25899999999999999999986540000013
Q ss_pred ceeeeeeccccccCCC-CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 367 KVSPLVCNVRQLCFKP-ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 367 ~i~~~~~Da~~l~~~~-~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
++.+.++|+.. +++. +.||+|+++.+...- .+++.++|+|| |++++.+..
T Consensus 146 ~v~~~~~d~~~-~~~~~~~fD~I~~~~~~~~~--------------~~~~~~~Lkpg-G~lvi~~~~ 196 (227)
T 1r18_A 146 QLLIVEGDGRK-GYPPNAPYNAIHVGAAAPDT--------------PTELINQLASG-GRLIVPVGP 196 (227)
T ss_dssp SEEEEESCGGG-CCGGGCSEEEEEECSCBSSC--------------CHHHHHTEEEE-EEEEEEESC
T ss_pred ceEEEECCccc-CCCcCCCccEEEECCchHHH--------------HHHHHHHhcCC-CEEEEEEec
Confidence 46889999887 3333 689999999875421 13578899999 999988765
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=7.7e-11 Score=116.95 Aligned_cols=91 Identities=13% Similarity=0.101 Sum_probs=80.0
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
..+.++..++..+++.++ .|||+|||+|.+...++.. +..|+|+|+|+.+++.+++|+.. .+++++++|
T Consensus 31 ~d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~--~~~V~avEid~~~~~~l~~~~~~--------~~v~vi~~D 99 (271)
T 3fut_A 31 VSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA--GAEVTAIEKDLRLRPVLEETLSG--------LPVRLVFQD 99 (271)
T ss_dssp CCHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT--TCCEEEEESCGGGHHHHHHHTTT--------SSEEEEESC
T ss_pred CCHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcCC--------CCEEEEECC
Confidence 578899999999999999 9999999999999999887 57899999999999999998762 346899999
Q ss_pred cccccCCC-CCeeEEEEcCCCcc
Q psy19 375 VRQLCFKP-ACVDGIVTDLPFGK 396 (494)
Q Consensus 375 a~~l~~~~-~~~D~IVtNPPYG~ 396 (494)
+.++++++ ..+|.||+||||..
T Consensus 100 ~l~~~~~~~~~~~~iv~NlPy~i 122 (271)
T 3fut_A 100 ALLYPWEEVPQGSLLVANLPYHI 122 (271)
T ss_dssp GGGSCGGGSCTTEEEEEEECSSC
T ss_pred hhhCChhhccCccEEEecCcccc
Confidence 99987653 26899999999975
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=3.4e-09 Score=109.05 Aligned_cols=119 Identities=10% Similarity=-0.038 Sum_probs=94.3
Q ss_pred HHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc
Q psy19 298 TIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ 377 (494)
Q Consensus 298 ~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~ 377 (494)
.++..++....+.++.+|||+|||+|.+++.++..+|+..++++|+ +.+++.|++++...++ ..++.+..+|+.
T Consensus 189 ~~~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l----~~~v~~~~~d~~- 262 (369)
T 3gwz_A 189 TEAGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGL----ADRCEILPGDFF- 262 (369)
T ss_dssp HHHHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC----TTTEEEEECCTT-
T ss_pred hhHHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCc----CCceEEeccCCC-
Confidence 3455666667778889999999999999999999999999999999 9999999999987654 456899999998
Q ss_pred ccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 378 LCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 378 l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
.+++. .||+|++.--... .. ..-...+|+++.++|+|| |+++++.
T Consensus 263 ~~~p~-~~D~v~~~~vlh~-~~-----d~~~~~~L~~~~~~L~pg-G~l~i~e 307 (369)
T 3gwz_A 263 ETIPD-GADVYLIKHVLHD-WD-----DDDVVRILRRIATAMKPD-SRLLVID 307 (369)
T ss_dssp TCCCS-SCSEEEEESCGGG-SC-----HHHHHHHHHHHHTTCCTT-CEEEEEE
T ss_pred CCCCC-CceEEEhhhhhcc-CC-----HHHHHHHHHHHHHHcCCC-CEEEEEE
Confidence 45554 8999998654321 11 122346788999999999 9998853
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.9e-10 Score=106.53 Aligned_cols=99 Identities=16% Similarity=0.157 Sum_probs=80.4
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHT-FFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~-~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
++.+|||+|||+|.++..+ +. .++|+|+++.+++.|++++. .+.+.++|+.++++++++||+|+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~----------~~~~~~~d~~~~~~~~~~fD~v~ 100 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAP----------EATWVRAWGEALPFPGESFDVVL 100 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCT----------TSEEECCCTTSCCSCSSCEEEEE
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCC----------CcEEEEcccccCCCCCCcEEEEE
Confidence 7889999999999988765 35 89999999999999999861 24688899998888778999999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
++-.+.. + .+ ...+++++.++|+|| |++++.+++.
T Consensus 101 ~~~~l~~-~---~~----~~~~l~~~~~~L~pg-G~l~i~~~~~ 135 (211)
T 2gs9_A 101 LFTTLEF-V---ED----VERVLLEARRVLRPG-GALVVGVLEA 135 (211)
T ss_dssp EESCTTT-C---SC----HHHHHHHHHHHEEEE-EEEEEEEECT
T ss_pred EcChhhh-c---CC----HHHHHHHHHHHcCCC-CEEEEEecCC
Confidence 9865432 1 12 346777899999999 9999987754
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.7e-10 Score=110.68 Aligned_cols=101 Identities=12% Similarity=0.114 Sum_probs=81.2
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
.++.+|||+|||+|.++..++.. +..++|+|+++.+++.|++++. ++.++++|+..+++ +++||+|+
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~----------~~~~~~~d~~~~~~-~~~fD~v~ 115 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADS--FGTVEGLELSADMLAIARRRNP----------DAVLHHGDMRDFSL-GRRFSAVT 115 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTT--SSEEEEEESCHHHHHHHHHHCT----------TSEEEECCTTTCCC-SCCEEEEE
T ss_pred CCCCcEEEeCCcCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC----------CCEEEECChHHCCc-cCCcCEEE
Confidence 35689999999999999998877 5689999999999999999854 24789999999877 57999999
Q ss_pred EcC-CCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 390 TDL-PFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 390 tNP-PYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
++. .+.. +.. ..-...+++++.++|+|| |.+++-
T Consensus 116 ~~~~~l~~-~~~----~~~~~~~l~~~~~~L~pg-G~l~i~ 150 (263)
T 3pfg_A 116 CMFSSIGH-LAG----QAELDAALERFAAHVLPD-GVVVVE 150 (263)
T ss_dssp ECTTGGGG-SCH----HHHHHHHHHHHHHTEEEE-EEEEEC
T ss_pred EcCchhhh-cCC----HHHHHHHHHHHHHhcCCC-cEEEEE
Confidence 986 4432 211 123456788999999999 998873
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.11 E-value=5.8e-10 Score=103.67 Aligned_cols=105 Identities=13% Similarity=-0.011 Sum_probs=77.0
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCC--CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-------
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYP--HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC------- 379 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~--~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~------- 379 (494)
.+++.+|||+|||+|.+++.++...+ +..++|+|+++.+ . ...+.++++|+.+.+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~-----~~~v~~~~~d~~~~~~~~~~~~ 83 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------P-----IPNVYFIQGEIGKDNMNNIKNI 83 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------C-----CTTCEEEECCTTTTSSCCC---
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------C-----CCCceEEEccccchhhhhhccc
Confidence 56788999999999999999998876 6899999999831 1 123578888988765
Q ss_pred ------------------CCCCCeeEEEEcCCCccccCC----ccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 380 ------------------FKPACVDGIVTDLPFGKRVGS----KSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 380 ------------------~~~~~~D~IVtNPPYG~r~~~----~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+++++||+|++|+++... +. ......+...++.++.++|+|| |++++.+.
T Consensus 84 ~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~-g~~~~d~~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~~ 155 (201)
T 2plw_A 84 NYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCI-GNKIDDHLNSCELTLSITHFMEQYINIG-GTYIVKMY 155 (201)
T ss_dssp --------CHHHHHHHHHHTTCCEEEEEECCCCCCC-SCHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred cccccccchhhHHHHHhhcCCCcccEEEeCCCcCCC-CCcccCHHHHHHHHHHHHHHHHHHccCC-CEEEEEEe
Confidence 455689999999864321 11 1111223345788999999999 99887544
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.10 E-value=2.3e-10 Score=111.39 Aligned_cols=94 Identities=15% Similarity=0.169 Sum_probs=80.1
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
..+.+.++..++..+++.++.+|||+|||+|.++.+++.. +..++|+|+|+.+++.|++|+... .++.+++
T Consensus 12 fl~d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~-------~~v~~~~ 82 (244)
T 1qam_A 12 FITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVDH-------DNFQVLN 82 (244)
T ss_dssp BCCCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTTC-------CSEEEEC
T ss_pred ccCCHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHc--CCeEEEEECCHHHHHHHHHhhccC-------CCeEEEE
Confidence 3467889999999998888999999999999999999987 479999999999999999998631 3578999
Q ss_pred eccccccCCC-CCeeEEEEcCCCcc
Q psy19 373 CNVRQLCFKP-ACVDGIVTDLPFGK 396 (494)
Q Consensus 373 ~Da~~l~~~~-~~~D~IVtNPPYG~ 396 (494)
+|+.++++++ ..+ .||+||||..
T Consensus 83 ~D~~~~~~~~~~~~-~vv~nlPy~~ 106 (244)
T 1qam_A 83 KDILQFKFPKNQSY-KIFGNIPYNI 106 (244)
T ss_dssp CCGGGCCCCSSCCC-EEEEECCGGG
T ss_pred ChHHhCCcccCCCe-EEEEeCCccc
Confidence 9999987763 345 7999999963
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=3.6e-10 Score=112.31 Aligned_cols=112 Identities=11% Similarity=-0.024 Sum_probs=84.7
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCc--------ccceeeeeeccccc-cC
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNR--------ELKVSPLVCNVRQL-CF 380 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~--------~~~i~~~~~Da~~l-~~ 380 (494)
..+.+|||+|||+|.++.+++.. +...++++|+|+.+++.|++|+ ... .++ ..+++++.+|+.+. +.
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~--~~l~~~~~~~~~~~v~~~~~D~~~~l~~ 149 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KID--NGLLEAMLNGKHEKAKLTIGDGFEFIKN 149 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTT--TTHHHHHHTTCCSSEEEEESCHHHHHHH
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhc--cccccccccCCCCcEEEEECchHHHhcc
Confidence 35679999999999999999887 6679999999999999999998 331 111 34688999998764 23
Q ss_pred CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+++||+|++|+|+... ....+ ....|++.+.++|+|| |.+++-+.
T Consensus 150 -~~~fD~Ii~d~~~~~~--~~~~l--~~~~~l~~~~~~L~pg-G~lv~~~~ 194 (281)
T 1mjf_A 150 -NRGFDVIIADSTDPVG--PAKVL--FSEEFYRYVYDALNNP-GIYVTQAG 194 (281)
T ss_dssp -CCCEEEEEEECCCCC-------T--TSHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred -cCCeeEEEECCCCCCC--cchhh--hHHHHHHHHHHhcCCC-cEEEEEcC
Confidence 4689999999996421 11111 1356777899999999 99888653
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=8.3e-10 Score=106.66 Aligned_cols=117 Identities=16% Similarity=0.269 Sum_probs=83.7
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCC------------------------
Q psy19 308 SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLN------------------------ 363 (494)
Q Consensus 308 ~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~------------------------ 363 (494)
...++.+|||+|||+|.+++.++..+. ..++|+|+++.+++.|++++...+....
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK 131 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence 345678999999999999998887643 4899999999999999999875421000
Q ss_pred cccce-eeeeeccccccC-CC---CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 364 RELKV-SPLVCNVRQLCF-KP---ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 364 ~~~~i-~~~~~Da~~l~~-~~---~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+...+ .+.++|+.+.++ .+ ++||+|+++--...-.. . ..-+..+++++.++|+|| |++++..
T Consensus 132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~---~-~~~~~~~l~~~~~~Lkpg-G~li~~~ 198 (265)
T 2i62_A 132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACP---D-LPAYRTALRNLGSLLKPG-GFLVMVD 198 (265)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCS---S-HHHHHHHHHHHHTTEEEE-EEEEEEE
T ss_pred hhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcC---C-hHHHHHHHHHHHhhCCCC-cEEEEEe
Confidence 00126 788999988643 44 78999999643210000 1 223567888999999999 9988754
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=7.1e-10 Score=111.99 Aligned_cols=115 Identities=17% Similarity=0.029 Sum_probs=86.9
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCC-c-ccceeeeeeccccc-cCCCCCeeE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLN-R-ELKVSPLVCNVRQL-CFKPACVDG 387 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~-~-~~~i~~~~~Da~~l-~~~~~~~D~ 387 (494)
.+.+|||+|||+|.++.+++...+...++++|+|+.+++.|++|+...+. + . ..+++++.+|+.+. +..+++||+
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~--~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 154 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQ--GAFDDPRAVLVIDDARAYLERTEERYDV 154 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHT--TGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcc--ccccCCceEEEEchHHHHHHhcCCCccE
Confidence 45799999999999999998876678999999999999999999864210 1 1 24678999999874 333578999
Q ss_pred EEEcCCCccccCCccchHHH-HHHHHHHHhhcccCCCcEEEEEe
Q psy19 388 IVTDLPFGKRVGSKSNNFLL-YRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~l-y~~fL~~l~rvLkpg~G~lvllt 430 (494)
|++|+|........ ...+ ...|++.+.++|+|| |.+++.+
T Consensus 155 Ii~d~~~~~~~~~~--~~~l~~~~~l~~~~~~Lkpg-G~lv~~~ 195 (314)
T 1uir_A 155 VIIDLTDPVGEDNP--ARLLYTVEFYRLVKAHLNPG-GVMGMQT 195 (314)
T ss_dssp EEEECCCCBSTTCG--GGGGSSHHHHHHHHHTEEEE-EEEEEEE
T ss_pred EEECCCCcccccCc--chhccHHHHHHHHHHhcCCC-cEEEEEc
Confidence 99999864311111 1112 356777899999999 9988764
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.08 E-value=6.1e-10 Score=104.40 Aligned_cols=104 Identities=13% Similarity=0.093 Sum_probs=76.8
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC--------
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF-------- 380 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~-------- 380 (494)
++++.+|||+|||+|.++..++.. +..|+|+|+++.+ . ...+.++++|+.+.+.
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~-----------~-----~~~v~~~~~D~~~~~~~~~~~~~~ 84 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME-----------E-----IAGVRFIRCDIFKETIFDDIDRAL 84 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC-----------C-----CTTCEEEECCTTSSSHHHHHHHHH
T ss_pred CCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc-----------c-----CCCeEEEEccccCHHHHHHHHHHh
Confidence 578999999999999999998887 7899999999741 1 1246889999987541
Q ss_pred C---CCCeeEEEEcCCCcccc---CCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 381 K---PACVDGIVTDLPFGKRV---GSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 381 ~---~~~~D~IVtNPPYG~r~---~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
. .++||+|++|||....- ........+...++..+.++|||| |++++.+.
T Consensus 85 ~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpG-G~lv~k~~ 140 (191)
T 3dou_A 85 REEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNG-GNVLLKQF 140 (191)
T ss_dssp HHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred hcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCC-CEEEEEEc
Confidence 1 14899999998753211 111122345667888999999999 99987544
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.6e-10 Score=116.41 Aligned_cols=92 Identities=21% Similarity=0.267 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccc
Q psy19 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVR 376 (494)
Q Consensus 297 e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~ 376 (494)
|.+...++....++++.+|||+|||+|+++++++..+++..++|+|+|+.|++.|++|+..++ .++.++++|+.
T Consensus 12 pvLl~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g------~~v~~v~~d~~ 85 (301)
T 1m6y_A 12 PVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS------DRVSLFKVSYR 85 (301)
T ss_dssp CTTHHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT------TTEEEEECCGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEECCHH
Confidence 344555666677888999999999999999999988777899999999999999999998654 35789999998
Q ss_pred ccc--CC---CCCeeEEEEcCCC
Q psy19 377 QLC--FK---PACVDGIVTDLPF 394 (494)
Q Consensus 377 ~l~--~~---~~~~D~IVtNPPY 394 (494)
.++ +. ...||.|++|||+
T Consensus 86 ~l~~~l~~~g~~~~D~Vl~D~gv 108 (301)
T 1m6y_A 86 EADFLLKTLGIEKVDGILMDLGV 108 (301)
T ss_dssp GHHHHHHHTTCSCEEEEEEECSC
T ss_pred HHHHHHHhcCCCCCCEEEEcCcc
Confidence 874 21 1479999999997
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.4e-09 Score=106.51 Aligned_cols=117 Identities=16% Similarity=0.208 Sum_probs=80.1
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCc-----------------------
Q psy19 308 SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNR----------------------- 364 (494)
Q Consensus 308 ~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~----------------------- 364 (494)
+..++.+|||+|||+|.+.+.++... ...|+|+|+++.|++.|+++++........
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~~-~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 130 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHhh-hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence 45678899999999998877666552 136999999999999999988653210000
Q ss_pred -cccee-eeeeccccc-cC---CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 365 -ELKVS-PLVCNVRQL-CF---KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 365 -~~~i~-~~~~Da~~l-~~---~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
...+. +.++|+.+. |+ ..++||+|+++-=... +. .+ ..-+..+++++.++|||| |++++..
T Consensus 131 ~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~-i~--~~-~~~~~~~l~~i~r~LKPG-G~li~~~ 197 (263)
T 2a14_A 131 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMEC-AC--CS-LDAYRAALCNLASLLKPG-GHLVTTV 197 (263)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHH-HC--SS-HHHHHHHHHHHHTTEEEE-EEEEEEE
T ss_pred HHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHH-hc--CC-HHHHHHHHHHHHHHcCCC-cEEEEEE
Confidence 01232 788998874 33 2468999999632110 00 01 123567888999999999 9998874
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-09 Score=111.92 Aligned_cols=108 Identities=10% Similarity=0.042 Sum_probs=86.4
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc--cCCCCCeeE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL--CFKPACVDG 387 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l--~~~~~~~D~ 387 (494)
.+..+|||+|||+|.+++.++..+|+.+++++|+ +.+++.|++++...++ ..++.+..+|+++. |++ ++||+
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~p-~~~D~ 251 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSG----SERIHGHGANLLDRDVPFP-TGFDA 251 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTT----GGGEEEEECCCCSSSCCCC-CCCSE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCc----ccceEEEEccccccCCCCC-CCcCE
Confidence 3567999999999999999999999999999999 9999999999986653 46789999999985 455 68999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
|++.--... .. .+-...+|+++.++|+|| |+++++-
T Consensus 252 v~~~~vlh~-~~-----~~~~~~~l~~~~~~L~pg-G~l~i~e 287 (363)
T 3dp7_A 252 VWMSQFLDC-FS-----EEEVISILTRVAQSIGKD-SKVYIME 287 (363)
T ss_dssp EEEESCSTT-SC-----HHHHHHHHHHHHHHCCTT-CEEEEEE
T ss_pred EEEechhhh-CC-----HHHHHHHHHHHHHhcCCC-cEEEEEe
Confidence 998532211 11 122346778899999999 9998854
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.9e-10 Score=107.60 Aligned_cols=108 Identities=15% Similarity=0.063 Sum_probs=82.8
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCC-----
Q psy19 308 SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKP----- 382 (494)
Q Consensus 308 ~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~----- 382 (494)
...++.+|||+|||+|.++..++...+ .++|+|+++.+++.|++++.. .++.++++|+.++++..
T Consensus 53 ~~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~--------~~~~~~~~d~~~~~~~~~~~~~ 122 (245)
T 3ggd_A 53 LFNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTA--------ANISYRLLDGLVPEQAAQIHSE 122 (245)
T ss_dssp TSCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCC--------TTEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcc--------cCceEEECcccccccccccccc
Confidence 356788999999999999999998844 899999999999999998731 24689999998864321
Q ss_pred CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 383 ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 383 ~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
..||+|+++..+..- ...+ ...+++++.++|+|| |+++++...
T Consensus 123 ~~~d~v~~~~~~~~~--~~~~----~~~~l~~~~~~Lkpg-G~l~i~~~~ 165 (245)
T 3ggd_A 123 IGDANIYMRTGFHHI--PVEK----RELLGQSLRILLGKQ-GAMYLIELG 165 (245)
T ss_dssp HCSCEEEEESSSTTS--CGGG----HHHHHHHHHHHHTTT-CEEEEEEEC
T ss_pred cCccEEEEcchhhcC--CHHH----HHHHHHHHHHHcCCC-CEEEEEeCC
Confidence 248999998654422 1112 346777899999999 998876543
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-09 Score=101.00 Aligned_cols=108 Identities=17% Similarity=0.058 Sum_probs=76.9
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHhcCCC---------CeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee-eecccc
Q psy19 308 SPIPGDVFLDPMCGGGTIPVECSLSYPH---------TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL-VCNVRQ 377 (494)
Q Consensus 308 ~~~~g~~VLDP~CGSGtilIEAA~~~~~---------~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~-~~Da~~ 377 (494)
...++.+|||+|||+|.+++.++...+. ..++|+|+++.+ .. ..+.++ ++|+..
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-----~~~~~~~~~d~~~ 82 (196)
T 2nyu_A 19 ILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-----EGATFLCPADVTD 82 (196)
T ss_dssp CCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-----TTCEEECSCCTTS
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-----CCCeEEEeccCCC
Confidence 3578899999999999999999988653 789999999831 11 234677 788765
Q ss_pred cc--------CCCCCeeEEEEcCCCccccC---CccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 378 LC--------FKPACVDGIVTDLPFGKRVG---SKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 378 l~--------~~~~~~D~IVtNPPYG~r~~---~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
.+ +++++||+|++|+++..... .......++..+++++.++|+|| |++++.+..
T Consensus 83 ~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~~~ 147 (196)
T 2nyu_A 83 PRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPG-GTFLCKTWA 147 (196)
T ss_dssp HHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEECC
T ss_pred HHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCC-CEEEEEecC
Confidence 43 23358999999986432111 11112334467889999999999 999887654
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-09 Score=104.10 Aligned_cols=103 Identities=12% Similarity=0.160 Sum_probs=79.6
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
.++.+|||+|||+|.++..++..+ ..++|+|+++.+++.|++++. .+.+.++|+..+++ +++||+|+
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~~----------~~~~~~~d~~~~~~-~~~~D~v~ 105 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEF--GDTAGLELSEDMLTHARKRLP----------DATLHQGDMRDFRL-GRKFSAVV 105 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHH--SEEEEEESCHHHHHHHHHHCT----------TCEEEECCTTTCCC-SSCEEEEE
T ss_pred CCCCeEEEecccCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhCC----------CCEEEECCHHHccc-CCCCcEEE
Confidence 567899999999999999988874 489999999999999998752 24788999998876 57899999
Q ss_pred EcC-CCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 390 TDL-PFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 390 tNP-PYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+.. .+. .+.. ..-...+++++.++|+|| |++++...
T Consensus 106 ~~~~~~~-~~~~----~~~~~~~l~~~~~~L~pg-G~l~~~~~ 142 (239)
T 3bxo_A 106 SMFSSVG-YLKT----TEELGAAVASFAEHLEPG-GVVVVEPW 142 (239)
T ss_dssp ECTTGGG-GCCS----HHHHHHHHHHHHHTEEEE-EEEEECCC
T ss_pred EcCchHh-hcCC----HHHHHHHHHHHHHhcCCC-eEEEEEec
Confidence 632 211 1111 122457788999999999 99887644
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.7e-09 Score=120.54 Aligned_cols=132 Identities=11% Similarity=-0.021 Sum_probs=99.1
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccC--CCCccccee
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSG--NLNRELKVS 369 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~--~~~~~~~i~ 369 (494)
.++.+.....++.+....++.+|||+|||+|.+++.++... +...|+|+|+++.|++.|++++..... ..+. .++.
T Consensus 703 PPL~eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVe 781 (950)
T 3htx_A 703 PPLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSAT 781 (950)
T ss_dssp SCHHHHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEE
T ss_pred chHHHHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceE
Confidence 36666666667777666688999999999999999998875 447999999999999999998764321 0111 3689
Q ss_pred eeeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 370 PLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 370 ~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
++++|+.++++.+++||+|+++--+.. +. ......+++++.++|+|| .+++.+++.
T Consensus 782 fiqGDa~dLp~~d~sFDlVV~~eVLeH-L~-----dp~l~~~L~eI~RvLKPG--~LIISTPN~ 837 (950)
T 3htx_A 782 LYDGSILEFDSRLHDVDIGTCLEVIEH-ME-----EDQACEFGEKVLSLFHPK--LLIVSTPNY 837 (950)
T ss_dssp EEESCTTSCCTTSCSCCEEEEESCGGG-SC-----HHHHHHHHHHHHHTTCCS--EEEEEECBG
T ss_pred EEECchHhCCcccCCeeEEEEeCchhh-CC-----hHHHHHHHHHHHHHcCCC--EEEEEecCc
Confidence 999999999887789999999654321 11 122446788999999996 566666654
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.03 E-value=2.3e-09 Score=105.90 Aligned_cols=129 Identities=19% Similarity=0.211 Sum_probs=85.5
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCC----------cc--------------
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLN----------RE-------------- 365 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~----------~~-------------- 365 (494)
.++.+|||+|||+|.+.+.++.. ++..|+|+|+++.|++.|++++........ +.
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 148 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACS-HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 148 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGG-GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhcc-CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence 36789999999999966544442 356999999999999999997753210000 00
Q ss_pred -cceeeeeecccc-ccC-----CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe--------
Q psy19 366 -LKVSPLVCNVRQ-LCF-----KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT-------- 430 (494)
Q Consensus 366 -~~i~~~~~Da~~-l~~-----~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt-------- 430 (494)
..+.++++|+.. +|+ ++++||+|+++.-+.. +.. + ..-+..+++++.++|||| |++++..
T Consensus 149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~-~~~--~-~~~~~~~l~~~~r~LkpG-G~l~~~~~~~~~~~~ 223 (289)
T 2g72_A 149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEA-VSP--D-LASFQRALDHITTLLRPG-GHLLLIGALEESWYL 223 (289)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHH-HCS--S-HHHHHHHHHHHHTTEEEE-EEEEEEEEESCCEEE
T ss_pred hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhh-hcC--C-HHHHHHHHHHHHHhcCCC-CEEEEEEecCcceEE
Confidence 013466678887 553 2356999999853221 000 0 123567888999999999 9988752
Q ss_pred ----------cCHHHHHHHHHhcc
Q psy19 431 ----------SDRKHLIQALHITS 444 (494)
Q Consensus 431 ----------~~~~~l~~~l~~~~ 444 (494)
.+...+.+.+...|
T Consensus 224 ~~~~~~~~~~~~~~~l~~~l~~aG 247 (289)
T 2g72_A 224 AGEARLTVVPVSEEEVREALVRSG 247 (289)
T ss_dssp ETTEEEECCCCCHHHHHHHHHHTT
T ss_pred cCCeeeeeccCCHHHHHHHHHHcC
Confidence 13455677777766
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.2e-10 Score=118.54 Aligned_cols=93 Identities=15% Similarity=0.056 Sum_probs=72.5
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhc--cCCCCcccceeeee
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN--SGNLNRELKVSPLV 372 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~--g~~~~~~~~i~~~~ 372 (494)
.++.+|.....+. .+|.+|||+|||+|.+++.+|.. +..|+|+|+|+.+++.|+.|+..+ |+ .++.+++
T Consensus 79 t~e~vA~~~a~~l--~~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-----~~i~~i~ 149 (410)
T 3ll7_A 79 SGAVTSSYKSRFI--REGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEG-----KDVNILT 149 (410)
T ss_dssp CCHHHHHHGGGGS--CTTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTT-----CEEEEEE
T ss_pred CHHHHHHHHHHhc--CCCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCC-----CcEEEEE
Confidence 3444554433222 35889999999999999988876 679999999999999999999977 53 4578999
Q ss_pred eccccc-cC-CCCCeeEEEEcCCCcc
Q psy19 373 CNVRQL-CF-KPACVDGIVTDLPFGK 396 (494)
Q Consensus 373 ~Da~~l-~~-~~~~~D~IVtNPPYG~ 396 (494)
+|+.+. +. .+..||+|++||||..
T Consensus 150 ~Da~~~L~~~~~~~fDvV~lDPPrr~ 175 (410)
T 3ll7_A 150 GDFKEYLPLIKTFHPDYIYVDPARRS 175 (410)
T ss_dssp SCGGGSHHHHHHHCCSEEEECCEEC-
T ss_pred CcHHHhhhhccCCCceEEEECCCCcC
Confidence 999874 32 2358999999999954
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.4e-09 Score=107.55 Aligned_cols=119 Identities=11% Similarity=0.121 Sum_probs=80.7
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCc-ccceeeeeecc------ccc--cCC
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNR-ELKVSPLVCNV------RQL--CFK 381 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~-~~~i~~~~~Da------~~l--~~~ 381 (494)
++.+|||+|||+|..+...+.. .+..|+|+|+++.||+.|++.+...+..... .-.+++.+.|+ ..+ +++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 4789999999999876654443 2468999999999999999988755421000 00134556655 333 244
Q ss_pred CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHH
Q psy19 382 PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHL 436 (494)
Q Consensus 382 ~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l 436 (494)
+++||+|+|.--...-... .+ ...+++++.++|||| |.+++.+++...+
T Consensus 127 ~~~FD~V~~~~~lhy~~~~-~~----~~~~l~~~~r~LkpG-G~~i~~~~~~~~~ 175 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHP-RH----YATVMNNLSELTASG-GKVLITTMDGDKL 175 (302)
T ss_dssp SSCEEEEEEESCGGGTCST-TT----HHHHHHHHHHHEEEE-EEEEEEEECHHHH
T ss_pred CCCeeEEEECchHHHhCCH-HH----HHHHHHHHHHHcCCC-CEEEEEeCCHHHH
Confidence 5799999986322111111 12 257888999999999 9999999987644
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=99.02 E-value=3.8e-10 Score=111.18 Aligned_cols=93 Identities=6% Similarity=-0.056 Sum_probs=72.2
Q ss_pred HHHHhCCCCC--CEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCC----cccceeeeeeccc
Q psy19 303 MVRLASPIPG--DVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLN----RELKVSPLVCNVR 376 (494)
Q Consensus 303 ll~la~~~~g--~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~----~~~~i~~~~~Da~ 376 (494)
++..++.+++ .+|||.+||+|+.++++|.. ++.|+|+|+++.++..++.|++.+..+.. +..+++++++|+.
T Consensus 78 l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~ 155 (258)
T 2oyr_A 78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL 155 (258)
T ss_dssp HHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHH
T ss_pred HHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHH
Confidence 4445566677 89999999999999999988 67899999999998888888875532211 2246889999998
Q ss_pred cc-cCCCCCeeEEEEcCCCccc
Q psy19 377 QL-CFKPACVDGIVTDLPFGKR 397 (494)
Q Consensus 377 ~l-~~~~~~~D~IVtNPPYG~r 397 (494)
++ +.....||+|++||||..+
T Consensus 156 ~~L~~~~~~fDvV~lDP~y~~~ 177 (258)
T 2oyr_A 156 TALTDITPRPQVVYLDPMFPHK 177 (258)
T ss_dssp HHSTTCSSCCSEEEECCCCCCC
T ss_pred HHHHhCcccCCEEEEcCCCCCc
Confidence 75 3212479999999999654
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-09 Score=110.04 Aligned_cols=110 Identities=10% Similarity=-0.045 Sum_probs=87.3
Q ss_pred hCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCee
Q psy19 307 ASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVD 386 (494)
Q Consensus 307 a~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D 386 (494)
..+.+..+|||+|||+|.+++.++..+|+..++++|+ +.+++.|++++...++ ..++++..+|+. .+++. .||
T Consensus 165 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~-~~~p~-~~D 237 (332)
T 3i53_A 165 YDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGL----SGRAQVVVGSFF-DPLPA-GAG 237 (332)
T ss_dssp SCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC----TTTEEEEECCTT-SCCCC-SCS
T ss_pred CCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCc----CcCeEEecCCCC-CCCCC-CCc
Confidence 3455678999999999999999999999999999999 9999999999987654 456899999997 34543 899
Q ss_pred EEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 387 GIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 387 ~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+|++.--... .. .+-...+++++.++|+|| |+++++.
T Consensus 238 ~v~~~~vlh~-~~-----~~~~~~~l~~~~~~L~pg-G~l~i~e 274 (332)
T 3i53_A 238 GYVLSAVLHD-WD-----DLSAVAILRRCAEAAGSG-GVVLVIE 274 (332)
T ss_dssp EEEEESCGGG-SC-----HHHHHHHHHHHHHHHTTT-CEEEEEE
T ss_pred EEEEehhhcc-CC-----HHHHHHHHHHHHHhcCCC-CEEEEEe
Confidence 9998543221 11 122456788999999999 9998864
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1e-09 Score=103.27 Aligned_cols=107 Identities=7% Similarity=0.069 Sum_probs=83.0
Q ss_pred HHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc--ccC
Q psy19 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ--LCF 380 (494)
Q Consensus 303 ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~--l~~ 380 (494)
++.+.. .++.+|||+|||+|.++..++.. +..++|+|+++.+++.|+.+.. .+.++|+.. .++
T Consensus 25 l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~~~~~~~~~~~~~~------------~~~~~d~~~~~~~~ 89 (230)
T 3cc8_A 25 LLKHIK-KEWKEVLDIGCSSGALGAAIKEN--GTRVSGIEAFPEAAEQAKEKLD------------HVVLGDIETMDMPY 89 (230)
T ss_dssp HHTTCC-TTCSEEEEETCTTSHHHHHHHTT--TCEEEEEESSHHHHHHHHTTSS------------EEEESCTTTCCCCS
T ss_pred HHHHhc-cCCCcEEEeCCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCC------------cEEEcchhhcCCCC
Confidence 334433 57789999999999999998877 4899999999999999987642 467788876 456
Q ss_pred CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
++++||+|+++-.+.. +. + ...++.++.++|+|| |.+++.+++.
T Consensus 90 ~~~~fD~v~~~~~l~~-~~---~----~~~~l~~~~~~L~~g-G~l~~~~~~~ 133 (230)
T 3cc8_A 90 EEEQFDCVIFGDVLEH-LF---D----PWAVIEKVKPYIKQN-GVILASIPNV 133 (230)
T ss_dssp CTTCEEEEEEESCGGG-SS---C----HHHHHHHTGGGEEEE-EEEEEEEECT
T ss_pred CCCccCEEEECChhhh-cC---C----HHHHHHHHHHHcCCC-CEEEEEeCCc
Confidence 6678999999755432 11 2 236777899999999 9999988764
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.3e-10 Score=110.78 Aligned_cols=111 Identities=8% Similarity=-0.131 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhc----CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS----YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 297 e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~----~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
+..+..|..+....++.+|||+|||+|.+++.+|.. +++.+|+|+|+++.+++.|+ +. ..++.+++
T Consensus 67 p~~~~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~----~~~v~~~~ 136 (236)
T 2bm8_A 67 PDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SD----MENITLHQ 136 (236)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GG----CTTEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------cc----CCceEEEE
Confidence 555555555554445679999999999999998876 67889999999999998887 11 23578999
Q ss_pred eccccc---cCCC-CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhh-cccCCCcEEEEE
Q psy19 373 CNVRQL---CFKP-ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGK-IVRPQIGRAILL 429 (494)
Q Consensus 373 ~Da~~l---~~~~-~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~r-vLkpg~G~lvll 429 (494)
+|+.+. +... .+||+|++|... .+ +..++.++.+ +|+|| |++++.
T Consensus 137 gD~~~~~~l~~~~~~~fD~I~~d~~~-------~~----~~~~l~~~~r~~LkpG-G~lv~~ 186 (236)
T 2bm8_A 137 GDCSDLTTFEHLREMAHPLIFIDNAH-------AN----TFNIMKWAVDHLLEEG-DYFIIE 186 (236)
T ss_dssp CCSSCSGGGGGGSSSCSSEEEEESSC-------SS----HHHHHHHHHHHTCCTT-CEEEEC
T ss_pred CcchhHHHHHhhccCCCCEEEECCch-------Hh----HHHHHHHHHHhhCCCC-CEEEEE
Confidence 999884 4322 379999998641 12 4567778997 99999 998874
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.4e-09 Score=109.66 Aligned_cols=117 Identities=16% Similarity=0.042 Sum_probs=92.5
Q ss_pred HHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc
Q psy19 298 TIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ 377 (494)
Q Consensus 298 ~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~ 377 (494)
..+..++....+.+ .+|||+|||+|.+++.++..+|+..++++|+ +.+++.|++++...++ ..++.+..+|+.+
T Consensus 155 ~~~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~ 228 (334)
T 2ip2_A 155 LAFHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLA----GERVSLVGGDMLQ 228 (334)
T ss_dssp HHHHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHH----TTSEEEEESCTTT
T ss_pred HHHHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCC----CCcEEEecCCCCC
Confidence 34556666666766 8999999999999999999888899999999 9999999999886653 3567899999987
Q ss_pred ccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 378 LCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 378 l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+++ ..||+|++.-.... .. ..-...+++++.++|+|| |++++.
T Consensus 229 -~~~-~~~D~v~~~~vl~~-~~-----~~~~~~~l~~~~~~L~pg-G~l~i~ 271 (334)
T 2ip2_A 229 -EVP-SNGDIYLLSRIIGD-LD-----EAASLRLLGNCREAMAGD-GRVVVI 271 (334)
T ss_dssp -CCC-SSCSEEEEESCGGG-CC-----HHHHHHHHHHHHHHSCTT-CEEEEE
T ss_pred -CCC-CCCCEEEEchhccC-CC-----HHHHHHHHHHHHHhcCCC-CEEEEE
Confidence 554 67999998654321 11 122356778899999999 999887
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.7e-09 Score=109.91 Aligned_cols=117 Identities=15% Similarity=0.085 Sum_probs=91.2
Q ss_pred HHHHHhCCCC-CCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-
Q psy19 302 NMVRLASPIP-GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC- 379 (494)
Q Consensus 302 ~ll~la~~~~-g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~- 379 (494)
.++....+.+ +.+|||+|||+|.++..++..+|+..++++|+ +.+++.|++++...++ ..++.+..+|+.+.+
T Consensus 169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~ 243 (352)
T 3mcz_A 169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDL----GGRVEFFEKNLLDARN 243 (352)
T ss_dssp HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTC----GGGEEEEECCTTCGGG
T ss_pred HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCC----CCceEEEeCCcccCcc
Confidence 3444445556 78999999999999999999999999999999 8899999999987654 457899999999875
Q ss_pred CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 380 FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 380 ~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+..+.||+|++.--... .. ..-...+++++.++|+|| |+++++.
T Consensus 244 ~~~~~~D~v~~~~vlh~-~~-----~~~~~~~l~~~~~~L~pg-G~l~i~e 287 (352)
T 3mcz_A 244 FEGGAADVVMLNDCLHY-FD-----AREAREVIGHAAGLVKPG-GALLILT 287 (352)
T ss_dssp GTTCCEEEEEEESCGGG-SC-----HHHHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred cCCCCccEEEEeccccc-CC-----HHHHHHHHHHHHHHcCCC-CEEEEEE
Confidence 12357999999643321 11 122457788999999999 9998864
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.00 E-value=7.3e-10 Score=110.36 Aligned_cols=93 Identities=11% Similarity=0.129 Sum_probs=76.7
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCC--CeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPH--TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~--~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
..+.++..++..+.+.++.+|||+|||+|.+...++...+. ..++|+|+|+.+++.+++|. . .++++++
T Consensus 26 ~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--~-------~~v~~i~ 96 (279)
T 3uzu_A 26 VDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--G-------ELLELHA 96 (279)
T ss_dssp CCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--G-------GGEEEEE
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--C-------CCcEEEE
Confidence 57788999999999999999999999999999998877321 33999999999999999994 1 2468999
Q ss_pred eccccccCCCC------CeeEEEEcCCCcc
Q psy19 373 CNVRQLCFKPA------CVDGIVTDLPFGK 396 (494)
Q Consensus 373 ~Da~~l~~~~~------~~D~IVtNPPYG~ 396 (494)
+|+.++++++- ....||+||||..
T Consensus 97 ~D~~~~~~~~~~~~~~~~~~~vv~NlPY~i 126 (279)
T 3uzu_A 97 GDALTFDFGSIARPGDEPSLRIIGNLPYNI 126 (279)
T ss_dssp SCGGGCCGGGGSCSSSSCCEEEEEECCHHH
T ss_pred CChhcCChhHhcccccCCceEEEEccCccc
Confidence 99999875421 3468999999974
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.97 E-value=7.6e-10 Score=108.36 Aligned_cols=92 Identities=10% Similarity=0.124 Sum_probs=76.8
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
..+.++..++..+.+.++.+|||+|||+|.+..+++.. +...++|+|+|+.+++.+++| . ..+++++++|
T Consensus 15 ~d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~-~--------~~~v~~i~~D 84 (249)
T 3ftd_A 15 VSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSI-G--------DERLEVINED 84 (249)
T ss_dssp ECHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTS-C--------CTTEEEECSC
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhc-c--------CCCeEEEEcc
Confidence 56889999999999999999999999999999998876 247999999999999999987 2 1346899999
Q ss_pred cccccCCCC-CeeEEEEcCCCcc
Q psy19 375 VRQLCFKPA-CVDGIVTDLPFGK 396 (494)
Q Consensus 375 a~~l~~~~~-~~D~IVtNPPYG~ 396 (494)
+.++++++. ....||+||||..
T Consensus 85 ~~~~~~~~~~~~~~vv~NlPy~i 107 (249)
T 3ftd_A 85 ASKFPFCSLGKELKVVGNLPYNV 107 (249)
T ss_dssp TTTCCGGGSCSSEEEEEECCTTT
T ss_pred hhhCChhHccCCcEEEEECchhc
Confidence 999876531 1348999999964
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=5.3e-09 Score=108.86 Aligned_cols=119 Identities=8% Similarity=0.018 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecc
Q psy19 296 KPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNV 375 (494)
Q Consensus 296 ~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da 375 (494)
...++..++......++.+|||+|||+|.++..++.. +..++|+|+++.+++.|+++ ++. . ....+...++
T Consensus 92 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~----~~~--~-~~~~~~~~~~ 162 (416)
T 4e2x_A 92 FAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK----GIR--V-RTDFFEKATA 162 (416)
T ss_dssp HHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT----TCC--E-ECSCCSHHHH
T ss_pred HHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc----CCC--c-ceeeechhhH
Confidence 3455666777777778899999999999999998876 67999999999999999876 221 0 0112344566
Q ss_pred ccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 376 RQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 376 ~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
..+++++++||+|+++--+.. + .+ ...+++++.++|+|| |.+++.+++
T Consensus 163 ~~l~~~~~~fD~I~~~~vl~h-~---~d----~~~~l~~~~r~Lkpg-G~l~i~~~~ 210 (416)
T 4e2x_A 163 DDVRRTEGPANVIYAANTLCH-I---PY----VQSVLEGVDALLAPD-GVFVFEDPY 210 (416)
T ss_dssp HHHHHHHCCEEEEEEESCGGG-C---TT----HHHHHHHHHHHEEEE-EEEEEEEEC
T ss_pred hhcccCCCCEEEEEECChHHh-c---CC----HHHHHHHHHHHcCCC-eEEEEEeCC
Confidence 666666689999999754331 1 12 457788999999999 999987664
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.95 E-value=6.6e-10 Score=109.03 Aligned_cols=91 Identities=11% Similarity=0.133 Sum_probs=75.1
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCe--EEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTF--FVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~--v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
..+.+++.|+..+.+.++++|||+|||+|.+.. ++. +.. ++|+|+|+.+++.+++|+... .++++++
T Consensus 5 ~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~---~~~~~v~avEid~~~~~~a~~~~~~~-------~~v~~i~ 73 (252)
T 1qyr_A 5 NDQFVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG---ERLDQLTVIELDRDLAARLQTHPFLG-------PKLTIYQ 73 (252)
T ss_dssp CCHHHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH---TTCSCEEEECCCHHHHHHHHTCTTTG-------GGEEEEC
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh---CCCCeEEEEECCHHHHHHHHHHhccC-------CceEEEE
Confidence 467889999999999999999999999999999 654 245 999999999999999887531 3578999
Q ss_pred eccccccCCC-----CCeeEEEEcCCCcc
Q psy19 373 CNVRQLCFKP-----ACVDGIVTDLPFGK 396 (494)
Q Consensus 373 ~Da~~l~~~~-----~~~D~IVtNPPYG~ 396 (494)
+|+.++++++ +..+.||+||||..
T Consensus 74 ~D~~~~~~~~~~~~~~~~~~vvsNlPY~i 102 (252)
T 1qyr_A 74 QDAMTFNFGELAEKMGQPLRVFGNLPYNI 102 (252)
T ss_dssp SCGGGCCHHHHHHHHTSCEEEEEECCTTT
T ss_pred CchhhCCHHHhhcccCCceEEEECCCCCc
Confidence 9999876532 24589999999974
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.94 E-value=3.2e-09 Score=100.44 Aligned_cols=95 Identities=18% Similarity=0.130 Sum_probs=76.1
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt 390 (494)
++.+|||+|||+|.++..++.. +|+|+++.+++.|+.+ + +.+.++|+..+++++++||+|++
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~----~--------~~~~~~d~~~~~~~~~~fD~v~~ 108 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR----G--------VFVLKGTAENLPLKDESFDFALM 108 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT----T--------CEEEECBTTBCCSCTTCEEEEEE
T ss_pred CCCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc----C--------CEEEEcccccCCCCCCCeeEEEE
Confidence 4789999999999998876543 8999999999999987 2 36888999888877779999999
Q ss_pred cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+-.+.. + .+ ...+++++.++|+|| |.+++.+++
T Consensus 109 ~~~l~~-~---~~----~~~~l~~~~~~L~pg-G~l~i~~~~ 141 (219)
T 1vlm_A 109 VTTICF-V---DD----PERALKEAYRILKKG-GYLIVGIVD 141 (219)
T ss_dssp ESCGGG-S---SC----HHHHHHHHHHHEEEE-EEEEEEEEC
T ss_pred cchHhh-c---cC----HHHHHHHHHHHcCCC-cEEEEEEeC
Confidence 865432 1 12 246777899999999 999887654
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=7.3e-09 Score=97.32 Aligned_cols=126 Identities=21% Similarity=0.277 Sum_probs=88.8
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeE
Q psy19 308 SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG 387 (494)
Q Consensus 308 ~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~ 387 (494)
...++.+|||+|||+|.++..++ ..++|+|+++. + +.+.++|+.++++++++||+
T Consensus 64 ~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~------------~--------~~~~~~d~~~~~~~~~~fD~ 118 (215)
T 2zfu_A 64 QRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL------------D--------PRVTVCDMAQVPLEDESVDV 118 (215)
T ss_dssp TSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS------------S--------TTEEESCTTSCSCCTTCEEE
T ss_pred ccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC------------C--------ceEEEeccccCCCCCCCEeE
Confidence 34567899999999999987652 57999999987 1 25788899888877789999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec-----CHHHHHHHHHhccccceeeeeEEEccCCceE
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS-----DRKHLIQALHITSALWKCRKQIKINMSGMKS 462 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~-----~~~~l~~~l~~~~~l~~~~~~~~v~~Ggl~~ 462 (494)
|+++..+. . .+ ...+++++.++|+|| |++++... ....+...+...| +.... .... ++ ..
T Consensus 119 v~~~~~l~--~---~~----~~~~l~~~~~~L~~g-G~l~i~~~~~~~~~~~~~~~~l~~~G--f~~~~-~~~~-~~-~~ 183 (215)
T 2zfu_A 119 AVFCLSLM--G---TN----IRDFLEEANRVLKPG-GLLKVAEVSSRFEDVRTFLRAVTKLG--FKIVS-KDLT-NS-HF 183 (215)
T ss_dssp EEEESCCC--S---SC----HHHHHHHHHHHEEEE-EEEEEEECGGGCSCHHHHHHHHHHTT--EEEEE-EECC-ST-TC
T ss_pred EEEehhcc--c---cC----HHHHHHHHHHhCCCC-eEEEEEEcCCCCCCHHHHHHHHHHCC--CEEEE-EecC-CC-eE
Confidence 99987653 1 22 346777899999999 99988654 3355777777766 34333 2222 22 23
Q ss_pred EEEEEeeCCCC
Q psy19 463 FVFILNRTADL 473 (494)
Q Consensus 463 ~i~v~~~~~~~ 473 (494)
.++++.+....
T Consensus 184 ~~~~~~k~~~~ 194 (215)
T 2zfu_A 184 FLFDFQKTGPP 194 (215)
T ss_dssp EEEEEEECSSC
T ss_pred EEEEEEecCcc
Confidence 56666665443
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=9.8e-10 Score=109.17 Aligned_cols=112 Identities=12% Similarity=0.047 Sum_probs=76.8
Q ss_pred CCCEEEEEcCCcCh----HHHHHHhcCC----CCeEEEEeCCHHHHHHHHHHHHhc----cC------------------
Q psy19 311 PGDVFLDPMCGGGT----IPVECSLSYP----HTFFVCGDINEKLVLKTQANVLHN----SG------------------ 360 (494)
Q Consensus 311 ~g~~VLDP~CGSGt----ilIEAA~~~~----~~~v~G~Did~~al~~Ar~Nl~~~----g~------------------ 360 (494)
++.+|+|+|||||. +++.++...+ +..|+|+|+|+.|++.|++++-.. ++
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45789999999997 5555544322 358999999999999999986210 00
Q ss_pred ----CCCcccceeeeeeccccccCC-CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 361 ----NLNRELKVSPLVCNVRQLCFK-PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 361 ----~~~~~~~i~~~~~Da~~l~~~-~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
...+...+.|.++|+.+.+++ .+.||+|+|.-= +..- ......++++.+.+.|+|| |.+++-
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnv----liyf--~~~~~~~vl~~~~~~L~pg-G~L~lg 251 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNV----MIYF--DKTTQEDILRRFVPLLKPD-GLLFAG 251 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSS----GGGS--CHHHHHHHHHHHGGGEEEE-EEEEEC
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCc----hHhC--CHHHHHHHHHHHHHHhCCC-cEEEEE
Confidence 000113588999999886554 468999999310 0000 1234567888999999999 987663
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.4e-08 Score=100.43 Aligned_cols=107 Identities=12% Similarity=0.034 Sum_probs=80.5
Q ss_pred CCCEEEEEcCCc---ChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc--------
Q psy19 311 PGDVFLDPMCGG---GTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-------- 379 (494)
Q Consensus 311 ~g~~VLDP~CGS---GtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-------- 379 (494)
+...|||+|||+ |.+...++..+|+.+|+|+|+++.|++.|++++.. ..++.++++|+.+.+
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~-------~~~v~~~~~D~~~~~~~~~~~~~ 149 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK-------DPNTAVFTADVRDPEYILNHPDV 149 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT-------CTTEEEEECCTTCHHHHHHSHHH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC-------CCCeEEEEeeCCCchhhhccchh
Confidence 457999999999 99877666777889999999999999999999852 135789999987531
Q ss_pred ---CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 380 ---FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 380 ---~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
++..+||+|+++--+.. +... + ...+++++.++|+|| |++++...
T Consensus 150 ~~~~d~~~~d~v~~~~vlh~-~~d~-~----~~~~l~~~~~~L~pG-G~l~i~~~ 197 (274)
T 2qe6_A 150 RRMIDFSRPAAIMLVGMLHY-LSPD-V----VDRVVGAYRDALAPG-SYLFMTSL 197 (274)
T ss_dssp HHHCCTTSCCEEEETTTGGG-SCTT-T----HHHHHHHHHHHSCTT-CEEEEEEE
T ss_pred hccCCCCCCEEEEEechhhh-CCcH-H----HHHHHHHHHHhCCCC-cEEEEEEe
Confidence 22247999999753321 1211 2 345677899999999 99887544
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.5e-09 Score=102.13 Aligned_cols=104 Identities=11% Similarity=-0.012 Sum_probs=74.8
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
.+..+|||+|||+|.+++..+...|++.++|+|+|+.|++.|++|+..+|+ ..++.+ .|....+ +.+.||+|+
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~----~~~v~~--~d~~~~~-~~~~~DvVL 120 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKT----TIKYRF--LNKESDV-YKGTYDVVF 120 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCC----SSEEEE--ECCHHHH-TTSEEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC----CccEEE--ecccccC-CCCCcChhh
Confidence 457799999999999999998888999999999999999999999998875 223333 6665543 347899999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
..-=+..- .. -+..+..+.+.|+|| |.++-.
T Consensus 121 a~k~LHlL-~~-------~~~al~~v~~~L~pg-gvfISf 151 (200)
T 3fzg_A 121 LLKMLPVL-KQ-------QDVNILDFLQLFHTQ-NFVISF 151 (200)
T ss_dssp EETCHHHH-HH-------TTCCHHHHHHTCEEE-EEEEEE
T ss_pred HhhHHHhh-hh-------hHHHHHHHHHHhCCC-CEEEEe
Confidence 85322110 00 011223588899997 755443
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=3.7e-09 Score=108.84 Aligned_cols=127 Identities=14% Similarity=0.100 Sum_probs=97.7
Q ss_pred HHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCC-Ccccceeeeeecccccc-CCC
Q psy19 305 RLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNL-NRELKVSPLVCNVRQLC-FKP 382 (494)
Q Consensus 305 ~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~-~~~~~i~~~~~Da~~l~-~~~ 382 (494)
.+..+++|++|||.|||.|+=.+.+|.......|++.|+++.-+...++|++.++... .....+.+...|+..++ ...
T Consensus 142 ~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~ 221 (359)
T 4fzv_A 142 LALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEG 221 (359)
T ss_dssp HHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHST
T ss_pred HHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhcc
Confidence 3457899999999999999888877777656689999999999999999999887521 12245778889998874 334
Q ss_pred CCeeEEEEcCCC-cc----ccCCc-----------cchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 383 ACVDGIVTDLPF-GK----RVGSK-----------SNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 383 ~~~D~IVtNPPY-G~----r~~~~-----------~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+.||.|+.|+|= |. +-... ..+..+-..+|..+.++|||| |+++..|+.
T Consensus 222 ~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpG-G~LVYsTCS 286 (359)
T 4fzv_A 222 DTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPG-GHVVYSTCS 286 (359)
T ss_dssp TCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEE-EEEEEEESC
T ss_pred ccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCC-cEEEEEeCC
Confidence 689999999994 21 11000 123456678999999999999 999999883
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=5.1e-09 Score=103.77 Aligned_cols=110 Identities=11% Similarity=0.008 Sum_probs=75.2
Q ss_pred CCCCEEEEEcCCcChHHHH----HHhcCCCCeE--EEEeCCHHHHHHHHHHHHhc-cCCCCcccceeeeeecccccc---
Q psy19 310 IPGDVFLDPMCGGGTIPVE----CSLSYPHTFF--VCGDINEKLVLKTQANVLHN-SGNLNRELKVSPLVCNVRQLC--- 379 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIE----AA~~~~~~~v--~G~Did~~al~~Ar~Nl~~~-g~~~~~~~~i~~~~~Da~~l~--- 379 (494)
.++.+|||+|||+|.+... .+..+++..+ +|+|.++.|++.|++++... ++. ...+.+..+|+..++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~ 127 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLE---NVKFAWHKETSSEYQSRM 127 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCT---TEEEEEECSCHHHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCC---cceEEEEecchhhhhhhh
Confidence 4677999999999976543 2333456654 99999999999999998643 210 012334566665543
Q ss_pred ---CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 380 ---FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 380 ---~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+.+++||+|++.--.. .-.+ ...+|+++.++|||| |+++++..
T Consensus 128 ~~~~~~~~fD~V~~~~~l~----~~~d----~~~~l~~~~r~Lkpg-G~l~i~~~ 173 (292)
T 2aot_A 128 LEKKELQKWDFIHMIQMLY----YVKD----IPATLKFFHSLLGTN-AKMLIIVV 173 (292)
T ss_dssp HTTTCCCCEEEEEEESCGG----GCSC----HHHHHHHHHHTEEEE-EEEEEEEE
T ss_pred ccccCCCceeEEEEeeeee----ecCC----HHHHHHHHHHHcCCC-cEEEEEEe
Confidence 4567999999964322 1123 346777899999999 99988654
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.3e-08 Score=100.08 Aligned_cols=115 Identities=16% Similarity=0.089 Sum_probs=79.1
Q ss_pred CCCCCCEEEEEcCCc------ChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee-eeecccccc
Q psy19 308 SPIPGDVFLDPMCGG------GTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP-LVCNVRQLC 379 (494)
Q Consensus 308 ~~~~g~~VLDP~CGS------GtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~-~~~Da~~l~ 379 (494)
.++++.+|||+|||| |+ .+ ++...+ +..|+|+|+++. + . .+.+ +++|+.+++
T Consensus 60 ~l~~g~~VLDLGcGsg~~~GpGs-~~-~a~~~~~~~~V~gvDis~~-v---------~--------~v~~~i~gD~~~~~ 119 (290)
T 2xyq_A 60 AVPYNMRVIHFGAGSDKGVAPGT-AV-LRQWLPTGTLLVDSDLNDF-V---------S--------DADSTLIGDCATVH 119 (290)
T ss_dssp CCCTTCEEEEESCCCTTSBCHHH-HH-HHHHSCTTCEEEEEESSCC-B---------C--------SSSEEEESCGGGCC
T ss_pred CCCCCCEEEEeCCCCCCCCCcHH-HH-HHHHcCCCCEEEEEECCCC-C---------C--------CCEEEEECccccCC
Confidence 467899999999955 77 33 343433 679999999997 1 1 2468 999999886
Q ss_pred CCCCCeeEEEEcCCC---ccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec---CHHHHHHHHHhcc
Q psy19 380 FKPACVDGIVTDLPF---GKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS---DRKHLIQALHITS 444 (494)
Q Consensus 380 ~~~~~~D~IVtNPPY---G~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~---~~~~l~~~l~~~~ 444 (494)
+. ++||+|++|++. |.+.........++..+++++.++|||| |++++... ....+...+...+
T Consensus 120 ~~-~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpG-G~~v~~~~~~~~~~~l~~~l~~~G 188 (290)
T 2xyq_A 120 TA-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALG-GSIAVKITEHSWNADLYKLMGHFS 188 (290)
T ss_dssp CS-SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEE-EEEEEEECSSSCCHHHHHHHTTEE
T ss_pred cc-CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCC-cEEEEEEeccCCHHHHHHHHHHcC
Confidence 64 689999999753 2121122222346778899999999999 99998552 2334555665544
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.8e-08 Score=101.13 Aligned_cols=114 Identities=12% Similarity=-0.004 Sum_probs=83.2
Q ss_pred HHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc
Q psy19 300 AYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC 379 (494)
Q Consensus 300 Aa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~ 379 (494)
+..++....+.++.+|||+|||+|.+++.++..+|+..++++|+ +.++. +.++... +...++.+..+|++ .+
T Consensus 173 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~----~~~~~v~~~~~d~~-~~ 244 (348)
T 3lst_A 173 HLILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAP----DVAGRWKVVEGDFL-RE 244 (348)
T ss_dssp HHHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCG----GGTTSEEEEECCTT-TC
T ss_pred HHHHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--ccccccc----CCCCCeEEEecCCC-CC
Confidence 33456666778889999999999999999999999899999999 55544 3333322 23456899999997 34
Q ss_pred CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 380 FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 380 ~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
.+ +||+|++.--+.. .. ..-...+|+++.++|+|| |+++++.
T Consensus 245 ~p--~~D~v~~~~vlh~-~~-----d~~~~~~L~~~~~~Lkpg-G~l~i~e 286 (348)
T 3lst_A 245 VP--HADVHVLKRILHN-WG-----DEDSVRILTNCRRVMPAH-GRVLVID 286 (348)
T ss_dssp CC--CCSEEEEESCGGG-SC-----HHHHHHHHHHHHHTCCTT-CEEEEEE
T ss_pred CC--CCcEEEEehhccC-CC-----HHHHHHHHHHHHHhcCCC-CEEEEEE
Confidence 44 8999999643321 11 112357788999999999 9998864
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.80 E-value=6.5e-09 Score=102.42 Aligned_cols=100 Identities=9% Similarity=-0.116 Sum_probs=78.8
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhc--cCCCCcccceeeeeeccccccCCCCCeeEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN--SGNLNRELKVSPLVCNVRQLCFKPACVDGI 388 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~--g~~~~~~~~i~~~~~Da~~l~~~~~~~D~I 388 (494)
.+.+|||+|||+|.++.+++.. + .+++++|+|+.+++.|++++... +. ...++++..+|+.... ++||+|
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~---~~~rv~~~~~D~~~~~---~~fD~I 143 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVK---NNKNFTHAKQLLDLDI---KKYDLI 143 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHH---TCTTEEEESSGGGSCC---CCEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhcccc---CCCeEEEEechHHHHH---hhCCEE
Confidence 4579999999999999998877 6 89999999999999999886531 11 1246789999998764 689999
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
|+|.+ .. . .|++.+.++|+|| |.+++-+.+
T Consensus 144 i~d~~------dp---~----~~~~~~~~~L~pg-G~lv~~~~~ 173 (262)
T 2cmg_A 144 FCLQE------PD---I----HRIDGLKRMLKED-GVFISVAKH 173 (262)
T ss_dssp EESSC------CC---H----HHHHHHHTTEEEE-EEEEEEEEC
T ss_pred EECCC------Ch---H----HHHHHHHHhcCCC-cEEEEEcCC
Confidence 99953 11 1 1666899999999 998886543
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.78 E-value=6.1e-09 Score=100.76 Aligned_cols=113 Identities=12% Similarity=0.002 Sum_probs=72.4
Q ss_pred HHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc
Q psy19 299 IAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378 (494)
Q Consensus 299 lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l 378 (494)
+..+|-.+.....+.+|||+|||+|.++..++... ...|+|+|+++.|++.|++|...... ....++...+...+
T Consensus 25 L~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~~~~~~----~~~~~~~~~~~~~~ 99 (232)
T 3opn_A 25 LEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSDERVVV----MEQFNFRNAVLADF 99 (232)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTCTTEEE----ECSCCGGGCCGGGC
T ss_pred HHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhCccccc----cccceEEEeCHhHc
Confidence 44444444333456799999999999999888872 24999999999999998886543211 01111111111122
Q ss_pred cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 379 CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 379 ~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+ ...+|.+.+|..|..- ..+++++.++|||| |++++++
T Consensus 100 ~--~~~~d~~~~D~v~~~l-----------~~~l~~i~rvLkpg-G~lv~~~ 137 (232)
T 3opn_A 100 E--QGRPSFTSIDVSFISL-----------DLILPPLYEILEKN-GEVAALI 137 (232)
T ss_dssp C--SCCCSEEEECCSSSCG-----------GGTHHHHHHHSCTT-CEEEEEE
T ss_pred C--cCCCCEEEEEEEhhhH-----------HHHHHHHHHhccCC-CEEEEEE
Confidence 1 1135667777665421 35677899999999 9998873
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=3.9e-08 Score=100.66 Aligned_cols=118 Identities=15% Similarity=0.102 Sum_probs=88.5
Q ss_pred HHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc
Q psy19 298 TIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ 377 (494)
Q Consensus 298 ~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~ 377 (494)
..+..++....+.+..+|+|+|||+|.++++++..+|+.+++..|. |.+++.|++++...+ .+++++..+|+++
T Consensus 166 ~~~~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-----~~rv~~~~gD~~~ 239 (353)
T 4a6d_A 166 VNGRSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-----EEQIDFQEGDFFK 239 (353)
T ss_dssp HHHHHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC-------CCSEEEEESCTTT
T ss_pred HHHHHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-----cCceeeecCcccc
Confidence 3444555555677788999999999999999999999999999998 889999999886432 4678999999987
Q ss_pred ccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 378 LCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 378 l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
.+++ .+|++++. .+ -+.-..+-...+|+++.+.|+|| |+++++-
T Consensus 240 ~~~~--~~D~~~~~-----~v-lh~~~d~~~~~iL~~~~~al~pg-g~lli~e 283 (353)
T 4a6d_A 240 DPLP--EADLYILA-----RV-LHDWADGKCSHLLERIYHTCKPG-GGILVIE 283 (353)
T ss_dssp SCCC--CCSEEEEE-----SS-GGGSCHHHHHHHHHHHHHHCCTT-CEEEEEE
T ss_pred CCCC--CceEEEee-----ee-cccCCHHHHHHHHHHHHhhCCCC-CEEEEEE
Confidence 6544 46988872 11 11111122346778899999999 9988853
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-08 Score=99.84 Aligned_cols=67 Identities=22% Similarity=0.275 Sum_probs=57.9
Q ss_pred cccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhcc
Q psy19 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNS 359 (494)
Q Consensus 290 ~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g 359 (494)
.+|++.++.|+..++.++. .+|+.||||||||||++++|+.. +.+++|+|+++.+++.|++|++.++
T Consensus 192 ~~~~~~p~~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~~r~~~~~ 258 (260)
T 1g60_A 192 THITPKPRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVLNQLE 258 (260)
T ss_dssp ---CCCCHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC--
T ss_pred CCCCCCCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHhcc
Confidence 4689999999999998876 68899999999999999999988 6899999999999999999998664
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.4e-09 Score=106.36 Aligned_cols=110 Identities=11% Similarity=0.006 Sum_probs=74.1
Q ss_pred hCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee--eeccccccCCCCC
Q psy19 307 ASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL--VCNVRQLCFKPAC 384 (494)
Q Consensus 307 a~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~--~~Da~~l~~~~~~ 384 (494)
...+++.+|||+|||+|.++..++.. ..|+|+|+++ ++..++++.... ......+.++ ++|+..++ +++
T Consensus 78 ~~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~---~~~~~~v~~~~~~~D~~~l~--~~~ 148 (276)
T 2wa2_A 78 GGVELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLV---ETFGWNLITFKSKVDVTKME--PFQ 148 (276)
T ss_dssp TSCCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCC---CCTTGGGEEEECSCCGGGCC--CCC
T ss_pred CCCCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhchhhh---hhcCCCeEEEeccCcHhhCC--CCC
Confidence 34568899999999999999988876 5899999998 533332211100 0111256788 89999876 478
Q ss_pred eeEEEEcCCCccccCCccchHHHHH--HHHHHHhhcccCCCc--EEEEEe
Q psy19 385 VDGIVTDLPFGKRVGSKSNNFLLYR--LFLIEIGKIVRPQIG--RAILLT 430 (494)
Q Consensus 385 ~D~IVtNPPYG~r~~~~~~~~~ly~--~fL~~l~rvLkpg~G--~lvllt 430 (494)
||+|++|.. .. .+.. .. +.+. .+|+.+.++|+|| | .+++-+
T Consensus 149 fD~Vvsd~~-~~-~~~~-~~-d~~~~l~~L~~~~r~LkpG-G~~~~v~~~ 193 (276)
T 2wa2_A 149 ADTVLCDIG-ES-NPTA-AV-EASRTLTVLNVISRWLEYN-QGCGFCVKV 193 (276)
T ss_dssp CSEEEECCC-CC-CSCH-HH-HHHHHHHHHHHHHHHHHHS-TTCEEEEEE
T ss_pred cCEEEECCC-cC-CCch-hh-hHHHHHHHHHHHHHHhccC-CCcEEEEEe
Confidence 999999976 21 1111 11 1111 2678899999999 9 887743
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.3e-08 Score=101.97 Aligned_cols=98 Identities=15% Similarity=0.076 Sum_probs=68.9
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc---CCCCCee
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC---FKPACVD 386 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~---~~~~~~D 386 (494)
.++.+|||+|||||.+...++.. ....|+|+|+++.|++.+.++-... ..+...|+..++ ++..+||
T Consensus 84 ~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv---------~~~~~~ni~~l~~~~l~~~~fD 153 (291)
T 3hp7_A 84 VEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRV---------RSMEQYNFRYAEPVDFTEGLPS 153 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTE---------EEECSCCGGGCCGGGCTTCCCS
T ss_pred ccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCccc---------ceecccCceecchhhCCCCCCC
Confidence 36779999999999999888776 2358999999999999865532110 112223333332 2334599
Q ss_pred EEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 387 GIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 387 ~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+|++|--|.. + ..+|.++.++|+|| |+++++
T Consensus 154 ~v~~d~sf~s-------l----~~vL~e~~rvLkpG-G~lv~l 184 (291)
T 3hp7_A 154 FASIDVSFIS-------L----NLILPALAKILVDG-GQVVAL 184 (291)
T ss_dssp EEEECCSSSC-------G----GGTHHHHHHHSCTT-CEEEEE
T ss_pred EEEEEeeHhh-------H----HHHHHHHHHHcCcC-CEEEEE
Confidence 9999976531 1 35666899999999 999887
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.73 E-value=3e-09 Score=105.04 Aligned_cols=111 Identities=11% Similarity=-0.032 Sum_probs=73.7
Q ss_pred hCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee--eeccccccCCCCC
Q psy19 307 ASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL--VCNVRQLCFKPAC 384 (494)
Q Consensus 307 a~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~--~~Da~~l~~~~~~ 384 (494)
...+++.+|||+|||+|.++..++.. ..|+|+|+++ ++..++.+.... ......+.++ ++|+..++ +++
T Consensus 70 ~~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~---~~~~~~v~~~~~~~D~~~l~--~~~ 140 (265)
T 2oxt_A 70 GYVELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRIT---ESYGWNIVKFKSRVDIHTLP--VER 140 (265)
T ss_dssp TSCCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCC---CBTTGGGEEEECSCCTTTSC--CCC
T ss_pred CCCCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhh---hccCCCeEEEecccCHhHCC--CCC
Confidence 44568899999999999999988876 6899999998 432222111000 0011146788 89999876 478
Q ss_pred eeEEEEcCCCccccCCcc-chHHHHHHHHHHHhhcccCCCc--EEEEEe
Q psy19 385 VDGIVTDLPFGKRVGSKS-NNFLLYRLFLIEIGKIVRPQIG--RAILLT 430 (494)
Q Consensus 385 ~D~IVtNPPYG~r~~~~~-~~~~ly~~fL~~l~rvLkpg~G--~lvllt 430 (494)
||+|++|.. . ..+... +..... .+|..+.++|+|| | .+++-+
T Consensus 141 fD~V~sd~~-~-~~~~~~~d~~~~l-~~L~~~~r~LkpG-G~~~fv~kv 185 (265)
T 2oxt_A 141 TDVIMCDVG-E-SSPKWSVESERTI-KILELLEKWKVKN-PSADFVVKV 185 (265)
T ss_dssp CSEEEECCC-C-CCSCHHHHHHHHH-HHHHHHHHHHHHC-TTCEEEEEE
T ss_pred CcEEEEeCc-c-cCCccchhHHHHH-HHHHHHHHHhccC-CCeEEEEEe
Confidence 999999976 2 122110 111011 2778899999999 9 887743
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.9e-08 Score=100.64 Aligned_cols=66 Identities=20% Similarity=0.242 Sum_probs=58.5
Q ss_pred cccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhc
Q psy19 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN 358 (494)
Q Consensus 290 ~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~ 358 (494)
.+|++..+.|+..++.++. .+|+.||||||||||++++|+.. +..++|+|+++.+++.|++|+...
T Consensus 215 ~h~~~~p~~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 215 DHPAPFPLELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp ---CCSCHHHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 3688899999999999887 68899999999999999999987 679999999999999999999865
|
| >2dir_A Thump domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.308.1.3 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.9e-08 Score=84.48 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=55.3
Q ss_pred eEEEEEEEEecCcccChHHHHHHHHHHHHhhc-CCCCCCCCCCEEEEEEEecCcceeccc
Q psy19 218 LKFRVTCNRVGKHTVTSMESERAFGGKLNDTY-FWLVDLDDYDIDINLQIRYNEAYVGLP 276 (494)
Q Consensus 218 ~tFrV~~~~~g~~~~~s~~~~~~v~~aI~d~~-~~~vdl~~pdi~i~v~l~~~~~~l~l~ 276 (494)
.||+|+++|.|+|.++|+++++.+|++|.+.+ +++|||+|||++|+|.+.++.+.+++-
T Consensus 32 ~TF~V~~kR~~k~~~~S~ei~~~vG~~i~~~~~~~kVdL~nPd~~I~VEI~~~~~~isv~ 91 (98)
T 2dir_A 32 GTFQIVYKSRNNSHVNREEVIRELAGIVCTLNSENKVDLTNPQYTVVVEIIKAVCCLSVV 91 (98)
T ss_dssp CEEEEEEECSSCCSSCHHHHHHHHHHHHHHHCTTCEECSSSCSEEEEEEEETTEEEEEEE
T ss_pred ceEEEEEEeCCCCCCCHHHHHHHHHHHHHhhCCCCeeEcCCCCEEEEEEEeCCEEEEEEc
Confidence 39999999999889999999999999999988 789999999999999999999998874
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.7e-08 Score=102.31 Aligned_cols=107 Identities=13% Similarity=0.058 Sum_probs=79.9
Q ss_pred HHHHHHhC-CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc
Q psy19 301 YNMVRLAS-PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC 379 (494)
Q Consensus 301 a~ll~la~-~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~ 379 (494)
..++.... +.++.+|||+|||+|.+++.++..+|+.+++++|+ +.+++.|+.+ .++++..+|+++ +
T Consensus 192 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~d~~~-~ 258 (368)
T 3reo_A 192 KKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-----------SGVEHLGGDMFD-G 258 (368)
T ss_dssp HHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-----------TTEEEEECCTTT-C
T ss_pred HHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-----------CCCEEEecCCCC-C
Confidence 33444333 66778999999999999999999999999999999 8888766531 347899999987 6
Q ss_pred CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 380 FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 380 ~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
++.+ |+|++.--... .. .+-...+|+++.++|+|| |+++++
T Consensus 259 ~p~~--D~v~~~~vlh~-~~-----~~~~~~~l~~~~~~L~pg-G~l~i~ 299 (368)
T 3reo_A 259 VPKG--DAIFIKWICHD-WS-----DEHCLKLLKNCYAALPDH-GKVIVA 299 (368)
T ss_dssp CCCC--SEEEEESCGGG-BC-----HHHHHHHHHHHHHHSCTT-CEEEEE
T ss_pred CCCC--CEEEEechhhc-CC-----HHHHHHHHHHHHHHcCCC-CEEEEE
Confidence 6543 99998543221 11 122346788999999999 998885
|
| >1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=9.7e-08 Score=96.27 Aligned_cols=59 Identities=32% Similarity=0.489 Sum_probs=56.1
Q ss_pred EEEEEEEEec-CcccChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEEEecCcceecccc
Q psy19 219 KFRVTCNRVG-KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPV 277 (494)
Q Consensus 219 tFrV~~~~~g-~~~~~s~~~~~~v~~aI~d~~~~~vdl~~pdi~i~v~l~~~~~~l~l~l 277 (494)
||+|+++|.| +|.|+|+++++.+|++|.+.++++||++|||++|+|.+.++.++++...
T Consensus 108 tF~Vr~kR~~k~~~~~S~ei~r~vG~~i~~~~~~~Vdl~~PD~~i~VEi~~~~~yv~~~~ 167 (307)
T 1vbk_A 108 KFRVTARRITKEFPLDSLEIQAKVGEYILNNENCEVDLKNYDIEIGIEIMQGKAYIYTEK 167 (307)
T ss_dssp EEEEEEEESSSCSSSCHHHHHHHHHHHHHHHSSCEECSSSCSEEEEEEEETTEEEEESCC
T ss_pred eEEEEEEeCCCCCCCChHHHHHHHHHHHHHHhCCceeeeCCCEEEEEEEEcCeEEEEEec
Confidence 8999999999 7899999999999999999998899999999999999999999998764
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=5.5e-08 Score=99.93 Aligned_cols=108 Identities=13% Similarity=0.077 Sum_probs=81.1
Q ss_pred HHHHHHHhC-CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc
Q psy19 300 AYNMVRLAS-PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378 (494)
Q Consensus 300 Aa~ll~la~-~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l 378 (494)
+..++.... +.++.+|||+|||+|.+++.++..+|+.+++++|+ +.+++.|+.+ .++.+..+|+++
T Consensus 189 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~D~~~- 255 (364)
T 3p9c_A 189 TKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-----------PGVTHVGGDMFK- 255 (364)
T ss_dssp HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-----------TTEEEEECCTTT-
T ss_pred HHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-----------CCeEEEeCCcCC-
Confidence 344555544 67788999999999999999999999999999999 8887766531 357899999988
Q ss_pred cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 379 CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 379 ~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+++.+ |+|++.--... . ..+-...+|+++.++|+|| |+++++
T Consensus 256 ~~p~~--D~v~~~~vlh~-~-----~d~~~~~~L~~~~~~L~pg-G~l~i~ 297 (364)
T 3p9c_A 256 EVPSG--DTILMKWILHD-W-----SDQHCATLLKNCYDALPAH-GKVVLV 297 (364)
T ss_dssp CCCCC--SEEEEESCGGG-S-----CHHHHHHHHHHHHHHSCTT-CEEEEE
T ss_pred CCCCC--CEEEehHHhcc-C-----CHHHHHHHHHHHHHHcCCC-CEEEEE
Confidence 66643 99988432110 0 1122456788999999999 999885
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=6.3e-08 Score=99.44 Aligned_cols=108 Identities=13% Similarity=0.090 Sum_probs=81.9
Q ss_pred HHHHHHHhC-CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc
Q psy19 300 AYNMVRLAS-PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378 (494)
Q Consensus 300 Aa~ll~la~-~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l 378 (494)
+..++.... +.++.+|||+|||+|.++..++..+|...++++|+ +.+++.|+.. ..+.+..+|+++
T Consensus 197 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~d~~~- 263 (372)
T 1fp1_D 197 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL-----------SGIEHVGGDMFA- 263 (372)
T ss_dssp HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-----------TTEEEEECCTTT-
T ss_pred HHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc-----------CCCEEEeCCccc-
Confidence 444555544 66788999999999999999999998899999999 9998776531 236899999987
Q ss_pred cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 379 CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 379 ~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+++. +|+|+++-.... .. + .-...+|+++.++|+|| |++++.
T Consensus 264 ~~~~--~D~v~~~~~lh~-~~---d--~~~~~~l~~~~~~L~pg-G~l~i~ 305 (372)
T 1fp1_D 264 SVPQ--GDAMILKAVCHN-WS---D--EKCIEFLSNCHKALSPN-GKVIIV 305 (372)
T ss_dssp CCCC--EEEEEEESSGGG-SC---H--HHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred CCCC--CCEEEEeccccc-CC---H--HHHHHHHHHHHHhcCCC-CEEEEE
Confidence 6653 999999654321 11 1 12346788999999999 998876
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.1e-06 Score=88.28 Aligned_cols=159 Identities=12% Similarity=0.035 Sum_probs=94.4
Q ss_pred EEEEEEEEecCcccChHHHHHHHHHHHHhhc---CCCCCCCCCCE-EEEE-EEecCcceecccccccc-cccccc-c--c
Q psy19 219 KFRVTCNRVGKHTVTSMESERAFGGKLNDTY---FWLVDLDDYDI-DINL-QIRYNEAYVGLPVTQTS-LHRRNI-V--E 289 (494)
Q Consensus 219 tFrV~~~~~g~~~~~s~~~~~~v~~aI~d~~---~~~vdl~~pdi-~i~v-~l~~~~~~l~l~lsg~s-L~~Rgy-~--~ 289 (494)
.++|.+--.+... ......+++...+...+ ++..+..+|.. .+++ .+..+.+++|+.....+ -+.-|. + +
T Consensus 102 ~l~ve~~dtne~k-~l~~f~rkf~~pL~~aL~~~g~l~~~~~~~~~vlhv~f~~~~~~~vG~s~~~n~s~~~~Gi~rl~~ 180 (375)
T 4auk_A 102 ELRVEVADTNESK-ELLKFCRKFTVPLRAALRDAGVLANYETPKRPVVHVFFIAPGCCYTGYSYSNNNSPFYMGIPRLKF 180 (375)
T ss_dssp EEEEECCSSSTTH-HHHHHHHHHHHHHHHHHHHHTSBCSSCCTTSCEEEEEEEETTEEEEEEECTTSSCSSGGGCCCCCC
T ss_pred eEEEECCCCccch-hhhhHHHHHHHHHHHHHHhCCccccccCCCCcEEEEEEEcCCEEEEEEecCCCCCCCcCCcccccC
Confidence 5666654433211 11223444544444332 55566667653 2333 45788999998776432 222222 1 1
Q ss_pred cccccchHH--HHHHHHHHh-------CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccC
Q psy19 290 FNITTLKPT--IAYNMVRLA-------SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSG 360 (494)
Q Consensus 290 ~~~a~L~e~--lAa~ll~la-------~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~ 360 (494)
-..+|-|.. |..++..+. ..++|.++||+||+.|+..-.++.+ ++.|+|+|+.+-. ..+..
T Consensus 181 ~~~~pSRa~lKL~Ea~~~F~~~~~~~~~l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~-----~~l~~--- 250 (375)
T 4auk_A 181 PADAPSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMA-----QSLMD--- 250 (375)
T ss_dssp CTTSSCTTHHHHHHHHHHHSCGGGHHHHSCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCC-----HHHHT---
T ss_pred CCCCCCHHHHHHHHHHHhccchhhhhccCCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcC-----hhhcc---
Confidence 122333322 233332221 2468999999999999999998887 7899999975421 11111
Q ss_pred CCCcccceeeeeeccccccCCCCCeeEEEEcC
Q psy19 361 NLNRELKVSPLVCNVRQLCFKPACVDGIVTDL 392 (494)
Q Consensus 361 ~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNP 392 (494)
...+.++++|++.+.+..+.+|+||||+
T Consensus 251 ----~~~V~~~~~d~~~~~~~~~~~D~vvsDm 278 (375)
T 4auk_A 251 ----TGQVTWLREDGFKFRPTRSNISWMVCDM 278 (375)
T ss_dssp ----TTCEEEECSCTTTCCCCSSCEEEEEECC
T ss_pred ----CCCeEEEeCccccccCCCCCcCEEEEcC
Confidence 1346889999999876667899999997
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.7e-07 Score=95.48 Aligned_cols=100 Identities=11% Similarity=0.064 Sum_probs=77.0
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEE
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGI 388 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~I 388 (494)
+.++.+|||+|||+|.++..++..+|+.+++|+|+ +.+++.|+.. ..+.+..+|+++ +++ .||+|
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~d~~~-~~p--~~D~v 250 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS-----------NNLTYVGGDMFT-SIP--NADAV 250 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB-----------TTEEEEECCTTT-CCC--CCSEE
T ss_pred cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC-----------CCcEEEeccccC-CCC--CccEE
Confidence 45678999999999999999999989899999999 9998876641 126899999977 554 39999
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHHhhcccC---CCcEEEEEe
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRP---QIGRAILLT 430 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkp---g~G~lvllt 430 (494)
++.-.... .. + .-...+|+++.++|+| | |+++++.
T Consensus 251 ~~~~~lh~-~~---d--~~~~~~l~~~~~~L~p~~~g-G~l~i~e 288 (352)
T 1fp2_A 251 LLKYILHN-WT---D--KDCLRILKKCKEAVTNDGKR-GKVTIID 288 (352)
T ss_dssp EEESCGGG-SC---H--HHHHHHHHHHHHHHSGGGCC-CEEEEEE
T ss_pred Eeehhhcc-CC---H--HHHHHHHHHHHHhCCCCCCC-cEEEEEE
Confidence 99644321 11 1 1234677899999999 9 9988763
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=2e-07 Score=93.71 Aligned_cols=107 Identities=11% Similarity=-0.036 Sum_probs=71.9
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeC----CHHHHHHHHHHHHhccCCCCcccceeeeee-ccccccCCCC
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDI----NEKLVLKTQANVLHNSGNLNRELKVSPLVC-NVRQLCFKPA 383 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Di----d~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~-Da~~l~~~~~ 383 (494)
.+++.+|||+|||+|.++..+|.. ..|+|+|+ ++.++..+. .. . .+ ...+.++++ |+..++ ..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~--~~--~--~~-~~~v~~~~~~D~~~l~--~~ 147 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIP--MS--T--YG-WNLVRLQSGVDVFFIP--PE 147 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCC--CC--S--TT-GGGEEEECSCCTTTSC--CC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHH--hh--h--cC-CCCeEEEeccccccCC--cC
Confidence 467889999999999999988876 47999999 454331110 01 0 01 135788888 998775 36
Q ss_pred CeeEEEEcCCCccccCCc-cchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 384 CVDGIVTDLPFGKRVGSK-SNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 384 ~~D~IVtNPPYG~r~~~~-~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+||+|++|.++. .+.. .+..... .+|..+.++|||| |.+++-+.
T Consensus 148 ~fD~V~sd~~~~--~g~~~~d~~~~l-~~L~~~~~~LkpG-G~~v~kv~ 192 (305)
T 2p41_A 148 RCDTLLCDIGES--SPNPTVEAGRTL-RVLNLVENWLSNN-TQFCVKVL 192 (305)
T ss_dssp CCSEEEECCCCC--CSSHHHHHHHHH-HHHHHHHHHCCTT-CEEEEEES
T ss_pred CCCEEEECCccc--cCcchhhHHHHH-HHHHHHHHHhCCC-CEEEEEeC
Confidence 899999998753 2221 0111111 4677889999999 98887443
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=4.8e-07 Score=89.75 Aligned_cols=108 Identities=12% Similarity=-0.023 Sum_probs=73.8
Q ss_pred CCCEEEEEcCCcCh--HHHHHH-hcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC----C--
Q psy19 311 PGDVFLDPMCGGGT--IPVECS-LSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF----K-- 381 (494)
Q Consensus 311 ~g~~VLDP~CGSGt--ilIEAA-~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~----~-- 381 (494)
+...|||+|||+|| .+.+.+ ..+|+++|+++|+|+.|++.|+.++...+ ..++.++++|+.+++. +
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-----~~~~~~v~aD~~~~~~~l~~~~~ 152 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-----EGRTAYVEADMLDPASILDAPEL 152 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-----SSEEEEEECCTTCHHHHHTCHHH
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-----CCcEEEEEecccChhhhhccccc
Confidence 34689999999743 344444 45899999999999999999999987432 2357899999987521 0
Q ss_pred CCCee-----EEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 382 PACVD-----GIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 382 ~~~~D-----~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
.+.|| .|++|-=+. .+....+. ..+++++.+.|+|| |.+++.
T Consensus 153 ~~~~D~~~p~av~~~avLH-~l~d~~~p----~~~l~~l~~~L~PG-G~Lvls 199 (277)
T 3giw_A 153 RDTLDLTRPVALTVIAIVH-FVLDEDDA----VGIVRRLLEPLPSG-SYLAMS 199 (277)
T ss_dssp HTTCCTTSCCEEEEESCGG-GSCGGGCH----HHHHHHHHTTSCTT-CEEEEE
T ss_pred ccccCcCCcchHHhhhhHh-cCCchhhH----HHHHHHHHHhCCCC-cEEEEE
Confidence 13344 567764322 12222222 24566899999999 998874
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=9.7e-08 Score=99.32 Aligned_cols=95 Identities=19% Similarity=0.117 Sum_probs=72.7
Q ss_pred CCCEEEEEcCC------cChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC--
Q psy19 311 PGDVFLDPMCG------GGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK-- 381 (494)
Q Consensus 311 ~g~~VLDP~CG------SGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~-- 381 (494)
++.+|||+||| +|...+..+.. +|++.|+|+|+++.|. .. ..++.++++|+.++++.
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~~------~~rI~fv~GDa~dlpf~~~ 281 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------VD------ELRIRTIQGDQNDAEFLDR 281 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------GC------BTTEEEEECCTTCHHHHHH
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------hc------CCCcEEEEecccccchhhh
Confidence 46799999999 77777766654 5889999999999972 11 24578999999998765
Q ss_pred ----CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 382 ----PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 382 ----~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+++||+|++|- .. . ..-+..+|+++.++|||| |.+++.
T Consensus 282 l~~~d~sFDlVisdg---sH--~----~~d~~~aL~el~rvLKPG-GvlVi~ 323 (419)
T 3sso_A 282 IARRYGPFDIVIDDG---SH--I----NAHVRTSFAALFPHVRPG-GLYVIE 323 (419)
T ss_dssp HHHHHCCEEEEEECS---CC--C----HHHHHHHHHHHGGGEEEE-EEEEEE
T ss_pred hhcccCCccEEEECC---cc--c----chhHHHHHHHHHHhcCCC-eEEEEE
Confidence 57999999972 11 1 123567888999999999 988874
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=2.4e-07 Score=100.77 Aligned_cols=74 Identities=14% Similarity=0.073 Sum_probs=63.4
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc--cCCCCCeeEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL--CFKPACVDGI 388 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l--~~~~~~~D~I 388 (494)
.+.+|||+|||+|.++..+|.. |+.|+|+|+++.+|+.|+..+...|. ..+++.++|+.++ ++.+++||+|
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~-----~~~~~~~~~~~~~~~~~~~~~fD~v 138 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPD-----FAAEFRVGRIEEVIAALEEGEFDLA 138 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTT-----SEEEEEECCHHHHHHHCCTTSCSEE
T ss_pred CCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCC-----CceEEEECCHHHHhhhccCCCccEE
Confidence 4579999999999999999988 78999999999999999999986652 2478999999887 4456789999
Q ss_pred EEc
Q psy19 389 VTD 391 (494)
Q Consensus 389 VtN 391 (494)
+|.
T Consensus 139 ~~~ 141 (569)
T 4azs_A 139 IGL 141 (569)
T ss_dssp EEE
T ss_pred EEC
Confidence 994
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=6.8e-07 Score=86.92 Aligned_cols=72 Identities=13% Similarity=-0.091 Sum_probs=61.2
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
.+..+|||+|||+|-+++..+ +...++|+|||+.+++.++.|+..+|. ...+..+|....+++ +++|+|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~------~~~~~v~D~~~~~~~-~~~DvvL 173 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDW------DFTFALQDVLCAPPA-EAGDLAL 173 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTC------EEEEEECCTTTSCCC-CBCSEEE
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCC------CceEEEeecccCCCC-CCcchHH
Confidence 457799999999998887655 678999999999999999999987764 347888999887765 5899999
Q ss_pred Ec
Q psy19 390 TD 391 (494)
Q Consensus 390 tN 391 (494)
.+
T Consensus 174 ll 175 (253)
T 3frh_A 174 IF 175 (253)
T ss_dssp EE
T ss_pred HH
Confidence 86
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=3e-07 Score=90.35 Aligned_cols=76 Identities=13% Similarity=0.065 Sum_probs=64.0
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
.+..+|||+|||+|-|++..+...|...++|+|||+.+++.++.|+..+|+. ..+...|...-++ .+.+|+++
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~------~~~~v~D~~~~~p-~~~~DvaL 203 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP------HRTNVADLLEDRL-DEPADVTL 203 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC------EEEEECCTTTSCC-CSCCSEEE
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC------ceEEEeeecccCC-CCCcchHH
Confidence 3467999999999999988777668899999999999999999999988752 4678888876554 37899999
Q ss_pred EcC
Q psy19 390 TDL 392 (494)
Q Consensus 390 tNP 392 (494)
++-
T Consensus 204 ~lk 206 (281)
T 3lcv_B 204 LLK 206 (281)
T ss_dssp ETT
T ss_pred HHH
Confidence 964
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=4.9e-07 Score=92.22 Aligned_cols=99 Identities=11% Similarity=0.082 Sum_probs=76.4
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEE
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGI 388 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~I 388 (494)
+.++.+|||+|||+|.++..++..+|+..++++|+ +.+++.|+. . ..+.+..+|+++ +++ .||+|
T Consensus 191 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~-~~v~~~~~d~~~-~~~--~~D~v 255 (358)
T 1zg3_A 191 FEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG----------N-ENLNFVGGDMFK-SIP--SADAV 255 (358)
T ss_dssp HHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC----------C-SSEEEEECCTTT-CCC--CCSEE
T ss_pred ccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc----------C-CCcEEEeCccCC-CCC--CceEE
Confidence 44668999999999999999999999899999999 788866553 1 237899999987 654 49999
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHHhhcccC---CCcEEEEE
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRP---QIGRAILL 429 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkp---g~G~lvll 429 (494)
+++-.+.. .. + .-...+|+++.++|+| | |+++++
T Consensus 256 ~~~~vlh~-~~---d--~~~~~~l~~~~~~L~p~~~g-G~l~i~ 292 (358)
T 1zg3_A 256 LLKWVLHD-WN---D--EQSLKILKNSKEAISHKGKD-GKVIII 292 (358)
T ss_dssp EEESCGGG-SC---H--HHHHHHHHHHHHHTGGGGGG-CEEEEE
T ss_pred EEcccccC-CC---H--HHHHHHHHHHHHhCCCCCCC-cEEEEE
Confidence 99755432 11 1 1234677889999999 9 998885
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=98.39 E-value=2.7e-07 Score=93.45 Aligned_cols=81 Identities=11% Similarity=0.153 Sum_probs=69.0
Q ss_pred cccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCccccee
Q psy19 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVS 369 (494)
Q Consensus 290 ~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~ 369 (494)
.+|++..+.|+..++.+.. .+|+.||||||||||.+++|... +.+.+|+|+++.+++.|+.++..++. ...
T Consensus 232 ~~~~~kp~~l~~~~i~~~~-~~~~~VlDpF~GsGtt~~aa~~~--gr~~ig~e~~~~~~~~~~~r~~~~~~------~~~ 302 (323)
T 1boo_A 232 AHPARFPAKLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFLDNNI------SEE 302 (323)
T ss_dssp CCSSCCCTHHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGSCSCS------CHH
T ss_pred CCCCcCCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHhccc------chH
Confidence 4688899999999998775 68899999999999999999888 78999999999999999999986653 235
Q ss_pred eeeecccccc
Q psy19 370 PLVCNVRQLC 379 (494)
Q Consensus 370 ~~~~Da~~l~ 379 (494)
.++.|+.+++
T Consensus 303 ~~~~~~~~i~ 312 (323)
T 1boo_A 303 KITDIYNRIL 312 (323)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6777887764
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.36 E-value=4.2e-07 Score=82.65 Aligned_cols=105 Identities=25% Similarity=0.180 Sum_probs=77.7
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC---CCCC
Q psy19 308 SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF---KPAC 384 (494)
Q Consensus 308 ~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~---~~~~ 384 (494)
+..+|..|||++||+ +++|+++.|++.|++++.. .+.+.++|+.++++ ++++
T Consensus 9 g~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~---------~~~~~~~d~~~~~~~~~~~~~ 63 (176)
T 2ld4_A 9 GISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGN---------EGRVSVENIKQLLQSAHKESS 63 (176)
T ss_dssp TCCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTT---------TSEEEEEEGGGGGGGCCCSSC
T ss_pred CCCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhccc---------CcEEEEechhcCccccCCCCC
Confidence 567899999999996 1389999999999988642 25789999999876 6789
Q ss_pred eeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC------------HHHHHHHHHhccc
Q psy19 385 VDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD------------RKHLIQALHITSA 445 (494)
Q Consensus 385 ~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~------------~~~l~~~l~~~~~ 445 (494)
||+|+++--+.. +. .+. ..+++++.++|||| |++++..+. ...+.+.+...|.
T Consensus 64 fD~V~~~~~l~~-~~--~~~----~~~l~~~~r~Lkpg-G~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 64 FDIILSGLVPGS-TT--LHS----AEILAEIARILRPG-GCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp EEEEEECCSTTC-CC--CCC----HHHHHHHHHHEEEE-EEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred EeEEEECChhhh-cc--cCH----HHHHHHHHHHCCCC-EEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence 999999754331 10 122 46777899999999 999885441 3346666776663
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=98.36 E-value=4.1e-07 Score=92.10 Aligned_cols=67 Identities=19% Similarity=0.205 Sum_probs=57.9
Q ss_pred cccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCH---HHHHHHHHHHHhcc
Q psy19 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINE---KLVLKTQANVLHNS 359 (494)
Q Consensus 290 ~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~---~al~~Ar~Nl~~~g 359 (494)
.+|++..+.|+..++.+.. .+|+.||||||||||.+++|... +.+.+|+|+++ ..++.|++++..++
T Consensus 222 ~~~~~kp~~l~~~~i~~~~-~~~~~vlDpF~GsGtt~~aa~~~--~r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 222 GHPTQKPAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp SCTTCCCHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred CCCCCCCHHHHHHHHHHhC-CCCCEEEecCCCCCHHHHHHHHc--CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 4688999999999998875 57899999999999999999988 68999999999 99999999988654
|
| >2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=6e-07 Score=94.04 Aligned_cols=128 Identities=15% Similarity=0.138 Sum_probs=85.2
Q ss_pred EEEEEEEEecCc-ccChHHHHHHHHHHHHhhc-CCCCCCCCCCEEEEEEEecCcceeccc-ccc---ccccccccc-ccc
Q psy19 219 KFRVTCNRVGKH-TVTSMESERAFGGKLNDTY-FWLVDLDDYDIDINLQIRYNEAYVGLP-VTQ---TSLHRRNIV-EFN 291 (494)
Q Consensus 219 tFrV~~~~~g~~-~~~s~~~~~~v~~aI~d~~-~~~vdl~~pdi~i~v~l~~~~~~l~l~-lsg---~sL~~Rgy~-~~~ 291 (494)
||+|+++|.|+| .|+|+++++.+|++|.+.+ +++||+++||+++.+.+.++.++++-. +.| -++...+.. ..-
T Consensus 115 tF~V~~kR~~k~f~~~S~ei~r~vG~~i~~~~~~~~Vdl~~Pdi~i~vEI~~~~~~i~~~~~~g~gglpi~~~~kvlval 194 (413)
T 2c5s_A 115 TFKITVHRSYKHFPMRTMELLPEIGGHILENTEDITVDVHNPDVNVRVEIRSGYSYIMCDERMGAGGLPVGVGGKVMVLL 194 (413)
T ss_dssp EEEEEEEECCTTCSSCHHHHHHHHHHHHHTTSSSCEECSSSCSEEEEEEECSSEEEEEEEEEECCCSBCTTTTEEEEEEC
T ss_pred cEEEEEEECCCCCCCChHHHHHHHHHHHHHhCCCCeeccCCCCeEEEEEEEeceeEEEEecccCCCCCccCCCCeEEEEe
Confidence 899999999987 8999999999999999998 789999999999999999998888765 222 122211111 223
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcC---h--HHHHHHhcC----CCCeEEEEeCCHHH
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGG---T--IPVECSLSY----PHTFFVCGDINEKL 347 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSG---t--ilIEAA~~~----~~~~v~G~Did~~a 347 (494)
.+....++++.++...+.+-....+|.. +.| . ...++|... .+..++-+|+++..
T Consensus 195 SGGvDS~vll~ll~~~G~~v~av~v~~~-~~~~~~~~~~v~~~a~~l~~~~ggi~~~vv~~~~~~ 258 (413)
T 2c5s_A 195 SGGIDSPVAAYLTMKRGVSVEAVHFHSP-PFTSERAKQKVIDLAQELTKYCKRVTLHLVPFTEVQ 258 (413)
T ss_dssp CSSSHHHHHHHHHHHBTEEEEEEEEECT-TTSCHHHHHHHHHHHHHHGGGSSCEEEEEEECHHHH
T ss_pred CCCChHHHHHHHHHHcCCcEEEEEEeCC-CCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcHHH
Confidence 4567777777777654432222345642 122 1 122222222 14667777876543
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=98.33 E-value=3e-07 Score=91.22 Aligned_cols=102 Identities=11% Similarity=-0.069 Sum_probs=76.4
Q ss_pred CCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc-c---CCCCCeeE
Q psy19 312 GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-C---FKPACVDG 387 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-~---~~~~~~D~ 387 (494)
+..+||.|+|||.+++|+... +.+++.+|.++.+++..++|+.. ..++.+++.|+... . .+...||+
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~--~d~~vfvE~~~~a~~~L~~Nl~~-------~~~~~V~~~D~~~~L~~l~~~~~~fdL 162 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPHF-------NKKVYVNHTDGVSKLNALLPPPEKRGL 162 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCCT-------TSCEEEECSCHHHHHHHHCSCTTSCEE
T ss_pred CCCceeEeCCcHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHhCc-------CCcEEEEeCcHHHHHHHhcCCCCCccE
Confidence 456899999999999998874 57899999999999999999973 24578999997553 1 22347999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhc--ccCCCcEEEEEec
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKI--VRPQIGRAILLTS 431 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rv--Lkpg~G~lvllt~ 431 (494)
|+.||||+..- .|.+.+..+.+. +.++ |.+++=.|
T Consensus 163 VfiDPPYe~k~--------~~~~vl~~L~~~~~r~~~-Gi~v~WYP 199 (283)
T 2oo3_A 163 IFIDPSYERKE--------EYKEIPYAIKNAYSKFST-GLYCVWYP 199 (283)
T ss_dssp EEECCCCCSTT--------HHHHHHHHHHHHHHHCTT-SEEEEEEE
T ss_pred EEECCCCCCCc--------HHHHHHHHHHHhCccCCC-eEEEEEEe
Confidence 99999998421 255555555553 3466 87777555
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.32 E-value=1.1e-06 Score=87.23 Aligned_cols=86 Identities=21% Similarity=0.247 Sum_probs=71.3
Q ss_pred HHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc
Q psy19 298 TIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ 377 (494)
Q Consensus 298 ~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~ 377 (494)
.|...++....++++..++|.+||.|+...+++.. +.+++|+|.|+.|++.|++ +.. .++.++++|+.+
T Consensus 9 VLl~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~~--------~rv~lv~~~f~~ 77 (285)
T 1wg8_A 9 VLYQEALDLLAVRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LHL--------PGLTVVQGNFRH 77 (285)
T ss_dssp TTHHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TCC--------TTEEEEESCGGG
T ss_pred HHHHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hcc--------CCEEEEECCcch
Confidence 45556666678889999999999999999998887 6799999999999999998 642 357899999988
Q ss_pred cc--C---CCCCeeEEEEcCCC
Q psy19 378 LC--F---KPACVDGIVTDLPF 394 (494)
Q Consensus 378 l~--~---~~~~~D~IVtNPPY 394 (494)
++ + ....+|.|++|++|
T Consensus 78 l~~~L~~~g~~~vDgIL~DLGv 99 (285)
T 1wg8_A 78 LKRHLAALGVERVDGILADLGV 99 (285)
T ss_dssp HHHHHHHTTCSCEEEEEEECSC
T ss_pred HHHHHHHcCCCCcCEEEeCCcc
Confidence 73 1 22479999999997
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.8e-05 Score=79.16 Aligned_cols=151 Identities=11% Similarity=0.084 Sum_probs=97.7
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc-cCCCCCeeEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-CFKPACVDGIV 389 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-~~~~~~~D~IV 389 (494)
...+||=+|-|.|+++-|++...+..+|..+|||+..++.|++-+.......--..+++++.+|++.. .-..++||+||
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi 162 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVII 162 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEE
T ss_pred CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEE
Confidence 34689999999999999988766667899999999999999987643211111135789999999886 22346899999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec----CHHHHHHHHHhccccceeeeeEEE----ccCCce
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS----DRKHLIQALHITSALWKCRKQIKI----NMSGMK 461 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~----~~~~l~~~l~~~~~l~~~~~~~~v----~~Ggl~ 461 (494)
.|.+-....+. .+ .-..|++.+.+.|+|+ |.++.=+. +...+...++.....+.....+.. +.||.+
T Consensus 163 ~D~~dp~~~~~--~L--~t~eFy~~~~~~L~p~-Gv~v~q~~sp~~~~~~~~~~~~~l~~~F~~v~~~~~~vPty~~g~w 237 (294)
T 3o4f_A 163 SDCTDPIGPGE--SL--FTSAFYEGCKRCLNPG-GIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGFYQAAIPTYYGGIM 237 (294)
T ss_dssp ESCCCCCCTTC--CS--SCCHHHHHHHHTEEEE-EEEEEEEEESSSCCHHHHHHHHHHHHHCSEEEEEEECCTTSSSSCE
T ss_pred EeCCCcCCCch--hh--cCHHHHHHHHHHhCCC-CEEEEecCCcccChHHHHHHHHHHHhhCCceeeeeeeeccCCCcce
Confidence 99864322211 11 0124556899999999 98887433 223344444333322333333333 346776
Q ss_pred EEEEE
Q psy19 462 SFVFI 466 (494)
Q Consensus 462 ~~i~v 466 (494)
..++-
T Consensus 238 ~f~~a 242 (294)
T 3o4f_A 238 TFAWA 242 (294)
T ss_dssp EEEEE
T ss_pred eheeE
Confidence 55443
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=5.6e-06 Score=90.81 Aligned_cols=103 Identities=15% Similarity=0.112 Sum_probs=73.0
Q ss_pred CCCEEEEEcCCcChH---HHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCee
Q psy19 311 PGDVFLDPMCGGGTI---PVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVD 386 (494)
Q Consensus 311 ~g~~VLDP~CGSGti---lIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D 386 (494)
.+.+|+|.|||+|-+ ++.|+... ..++|+|+|.++. ...|+++.+.++. .++|+++++|++++.++ +++|
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~a~~~v~~N~~----~dkVtVI~gd~eev~LP-EKVD 430 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVVTLENWQFEEW----GSQVTVVSSDMREWVAP-EKAD 430 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHHHHHHHHHHTT----GGGEEEEESCTTTCCCS-SCEE
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHHHHHHHHhccC----CCeEEEEeCcceeccCC-cccC
Confidence 345799999999988 44444432 1237899999985 4578888888764 67899999999999776 6899
Q ss_pred EEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEE
Q psy19 387 GIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRA 426 (494)
Q Consensus 387 ~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~l 426 (494)
+||+.+= |.- ...+.+. ..+...-++|||| |.+
T Consensus 431 IIVSEwM-G~f-Ll~E~ml----evL~Ardr~LKPg-Gim 463 (637)
T 4gqb_A 431 IIVSELL-GSF-ADNELSP----ECLDGAQHFLKDD-GVS 463 (637)
T ss_dssp EEECCCC-BTT-BGGGCHH----HHHHHHGGGEEEE-EEE
T ss_pred EEEEEcC-ccc-ccccCCH----HHHHHHHHhcCCC-cEE
Confidence 9999752 321 1222222 3444578899998 643
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.01 E-value=1.3e-05 Score=88.35 Aligned_cols=103 Identities=17% Similarity=0.054 Sum_probs=72.4
Q ss_pred CCEEEEEcCCcChHHH---HHHh-cC---------CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc
Q psy19 312 GDVFLDPMCGGGTIPV---ECSL-SY---------PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378 (494)
Q Consensus 312 g~~VLDP~CGSGtilI---EAA~-~~---------~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l 378 (494)
+.+|+|.|||+|-+.. .|+. .. ...+|+|+|.++.++...+.... +|. .++|+++++|++++
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~----~d~VtVI~gd~eev 484 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTW----KRRVTIIESDMRSL 484 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTT----TTCSEEEESCGGGH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCC----CCeEEEEeCchhhc
Confidence 4589999999999953 3332 11 12489999999988866555444 543 56789999999998
Q ss_pred cCC-----CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEE
Q psy19 379 CFK-----PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRA 426 (494)
Q Consensus 379 ~~~-----~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~l 426 (494)
.++ .+.+|+||+-+. |.-. ..++....|..+.++|+|+ |.+
T Consensus 485 ~lp~~~~~~ekVDIIVSElm-----Gsfl-~nEL~pe~Ld~v~r~Lkp~-Gi~ 530 (745)
T 3ua3_A 485 PGIAKDRGFEQPDIIVSELL-----GSFG-DNELSPECLDGVTGFLKPT-TIS 530 (745)
T ss_dssp HHHHHHTTCCCCSEEEECCC-----BTTB-GGGSHHHHHHTTGGGSCTT-CEE
T ss_pred ccccccCCCCcccEEEEecc-----cccc-chhccHHHHHHHHHhCCCC-cEE
Confidence 662 368999999764 2211 1234556666788999998 743
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.98 E-value=8.1e-06 Score=80.10 Aligned_cols=127 Identities=13% Similarity=0.083 Sum_probs=84.4
Q ss_pred CCCCEEEEEcCCcChHHHHHHhc-------CCC-----CeEEEEeCCH---HHHH-----------HHHHHHHhcc----
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLS-------YPH-----TFFVCGDINE---KLVL-----------KTQANVLHNS---- 359 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~-------~~~-----~~v~G~Did~---~al~-----------~Ar~Nl~~~g---- 359 (494)
+++.+|||+|||+|.-++.++.. .|. ..++++|.+| +.+. .|+.++....
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 35578999999999887776554 342 5899999887 4444 5666665411
Q ss_pred ------CCCCcccceeeeeeccccc-cC-CC---CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 360 ------GNLNRELKVSPLVCNVRQL-CF-KP---ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 360 ------~~~~~~~~i~~~~~Da~~l-~~-~~---~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
...+ ...+.++.+|+.+. +. .. ..||+|+.|| |..... . ++ .+..++..+.++|+|| |.++.
T Consensus 139 g~~r~~~~~~-~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~-fsp~~~-p-~l--w~~~~l~~l~~~L~pG-G~l~t 211 (257)
T 2qy6_A 139 GCHRLLLDEG-RVTLDLWFGDINELISQLDDSLNQKVDAWFLDG-FAPAKN-P-DM--WTQNLFNAMARLARPG-GTLAT 211 (257)
T ss_dssp EEEEEEEC---CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECS-SCTTTC-G-GG--CCHHHHHHHHHHEEEE-EEEEE
T ss_pred chhheeccCC-ceEEEEEECcHHHHHhhcccccCCeEEEEEECC-CCcccC-h-hh--cCHHHHHHHHHHcCCC-cEEEE
Confidence 1000 13567899999874 42 22 2799999996 322211 1 11 1456788999999999 99888
Q ss_pred EecCHHHHHHHHHhcc
Q psy19 429 LTSDRKHLIQALHITS 444 (494)
Q Consensus 429 lt~~~~~l~~~l~~~~ 444 (494)
.+.... +.+.+...|
T Consensus 212 ysaa~~-vrr~L~~aG 226 (257)
T 2qy6_A 212 FTSAGF-VRRGLQEAG 226 (257)
T ss_dssp SCCBHH-HHHHHHHHT
T ss_pred EeCCHH-HHHHHHHCC
Confidence 777764 677777666
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=97.72 E-value=4.3e-05 Score=77.92 Aligned_cols=72 Identities=17% Similarity=0.098 Sum_probs=54.9
Q ss_pred CEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC---CCCCeeEE
Q psy19 313 DVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF---KPACVDGI 388 (494)
Q Consensus 313 ~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~---~~~~~D~I 388 (494)
.+|+|+|||+|++.+.+....- ...++++|+|+.+++..+.|.... .++++|+.++.. +...+|+|
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~----------~~~~~Di~~~~~~~~~~~~~D~l 72 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHT----------QLLAKTIEGITLEEFDRLSFDMI 72 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTS----------CEECSCGGGCCHHHHHHHCCSEE
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcccc----------ccccCCHHHccHhHcCcCCcCEE
Confidence 4799999999999998887621 136899999999999999997521 356778877631 11268999
Q ss_pred EEcCCC
Q psy19 389 VTDLPF 394 (494)
Q Consensus 389 VtNPPY 394 (494)
+.+||.
T Consensus 73 ~~gpPC 78 (343)
T 1g55_A 73 LMSPPC 78 (343)
T ss_dssp EECCC-
T ss_pred EEcCCC
Confidence 999994
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00014 Score=68.77 Aligned_cols=112 Identities=13% Similarity=0.049 Sum_probs=74.1
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
+.+.-++.|.. ...+..+||+.|||..|+.+ |.. ++.+|+.+|.|++..+.|+.|++.+|+. -.++++++.+|
T Consensus 16 v~~~~~~~L~~--~l~~a~~VLEiGtGySTl~l--A~~-~~g~VvtvE~d~~~~~~ar~~l~~~g~~--~~~~I~~~~gd 88 (202)
T 3cvo_A 16 MPPAEAEALRM--AYEEAEVILEYGSGGSTVVA--AEL-PGKHVTSVESDRAWARMMKAWLAANPPA--EGTEVNIVWTD 88 (202)
T ss_dssp SCHHHHHHHHH--HHHHCSEEEEESCSHHHHHH--HTS-TTCEEEEEESCHHHHHHHHHHHHHSCCC--TTCEEEEEECC
T ss_pred CCHHHHHHHHH--HhhCCCEEEEECchHHHHHH--HHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCC--CCCceEEEEeC
Confidence 34444444433 22356799999997544433 443 3689999999999999999999988641 03567899998
Q ss_pred cccc---------------c--------C-CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEE
Q psy19 375 VRQL---------------C--------F-KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAI 427 (494)
Q Consensus 375 a~~l---------------~--------~-~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lv 427 (494)
+... + . ..+.||+|+.|=.+. . ..+..+.+.|+|| |.++
T Consensus 89 a~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~--------~-----~~~~~~l~~l~~G-G~Iv 151 (202)
T 3cvo_A 89 IGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFR--------V-----GCALATAFSITRP-VTLL 151 (202)
T ss_dssp CSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSH--------H-----HHHHHHHHHCSSC-EEEE
T ss_pred chhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCc--------h-----hHHHHHHHhcCCC-eEEE
Confidence 6532 1 1 126899999984321 1 2223466899999 8763
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.66 E-value=3.6e-05 Score=78.08 Aligned_cols=86 Identities=15% Similarity=0.122 Sum_probs=67.4
Q ss_pred HHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc
Q psy19 300 AYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378 (494)
Q Consensus 300 Aa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l 378 (494)
...++....+++|.+++|..||.|.-..+++.. .+..+|+|+|+|+.|++.|+ ++. ..++.++++++.++
T Consensus 46 l~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~--------~~Rv~lv~~nF~~l 116 (347)
T 3tka_A 46 LDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID--------DPRFSIIHGPFSAL 116 (347)
T ss_dssp THHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC--------CTTEEEEESCGGGH
T ss_pred HHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc--------CCcEEEEeCCHHHH
Confidence 334455567889999999999999999888876 46789999999999999984 331 24678999998876
Q ss_pred c--CC----CCCeeEEEEcCCC
Q psy19 379 C--FK----PACVDGIVTDLPF 394 (494)
Q Consensus 379 ~--~~----~~~~D~IVtNPPY 394 (494)
. +. .+++|.|+.|..|
T Consensus 117 ~~~L~~~g~~~~vDgILfDLGV 138 (347)
T 3tka_A 117 GEYVAERDLIGKIDGILLDLGV 138 (347)
T ss_dssp HHHHHHTTCTTCEEEEEEECSC
T ss_pred HHHHHhcCCCCcccEEEECCcc
Confidence 2 11 1369999999998
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00017 Score=73.11 Aligned_cols=97 Identities=14% Similarity=0.097 Sum_probs=64.9
Q ss_pred CCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC-CCCeeEEEE
Q psy19 312 GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK-PACVDGIVT 390 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~-~~~~D~IVt 390 (494)
+.+++|+|||+|++.+.+.... ...++++|+|+.+++..+.|.... .++|+.++... -..+|+|+.
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG-~~~v~~~e~d~~a~~t~~~N~~~~------------~~~Di~~~~~~~~~~~D~l~~ 77 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNFGEK------------PEGDITQVNEKTIPDHDILCA 77 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTT-CEEEEEECCCHHHHHHHHHHHSCC------------CBSCGGGSCGGGSCCCSEEEE
T ss_pred CCcEEEECCCcCHHHHHHHHCC-CeEEEEEeCCHHHHHHHHHHcCCC------------CcCCHHHcCHhhCCCCCEEEE
Confidence 4689999999999999887763 235778999999999999997521 15677666321 125899999
Q ss_pred cCCCc------cccCCccchHHHHHHHHHHHhhcccCC
Q psy19 391 DLPFG------KRVGSKSNNFLLYRLFLIEIGKIVRPQ 422 (494)
Q Consensus 391 NPPYG------~r~~~~~~~~~ly~~fL~~l~rvLkpg 422 (494)
+||+. .+.+.......|+..+++-+ +.++|.
T Consensus 78 gpPCQ~fS~ag~~~g~~d~r~~L~~~~~r~i-~~~~P~ 114 (327)
T 2c7p_A 78 GFPCQAFSISGKQKGFEDSRGTLFFDIARIV-REKKPK 114 (327)
T ss_dssp ECCCTTTCTTSCCCGGGSTTSCHHHHHHHHH-HHHCCS
T ss_pred CCCCCCcchhcccCCCcchhhHHHHHHHHHH-HhccCc
Confidence 99983 22221111123555555533 346786
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00021 Score=73.84 Aligned_cols=97 Identities=19% Similarity=0.241 Sum_probs=65.1
Q ss_pred CEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC--------CCCC
Q psy19 313 DVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF--------KPAC 384 (494)
Q Consensus 313 ~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~--------~~~~ 384 (494)
.+++|+|||+|++.+.+.... ...++++|+|+.+++..+.|... ..++++|+.++.. ....
T Consensus 3 ~~vidLFsG~GGlslG~~~aG-~~~v~avE~d~~a~~t~~~N~~~----------~~~~~~DI~~~~~~~~~~~~~~~~~ 71 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAG-FDVKMAVEIDQHAINTHAINFPR----------SLHVQEDVSLLNAEIIKGFFKNDMP 71 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHT-CEEEEEECSCHHHHHHHHHHCTT----------SEEECCCGGGCCHHHHHHHHCSCCC
T ss_pred CeEEEEccCcCHHHHHHHHCC-CcEEEEEeCCHHHHHHHHHhCCC----------CceEecChhhcCHHHHHhhcccCCC
Confidence 479999999999998887763 23467999999999999998641 2456777776621 2357
Q ss_pred eeEEEEcCC---C---ccccCCccchHHHHHHHHHHHhhcccCC
Q psy19 385 VDGIVTDLP---F---GKRVGSKSNNFLLYRLFLIEIGKIVRPQ 422 (494)
Q Consensus 385 ~D~IVtNPP---Y---G~r~~~~~~~~~ly~~fL~~l~rvLkpg 422 (494)
+|+|+..|| | |.+ +....-..|+..+++-+ +.++|.
T Consensus 72 ~D~i~ggpPCQ~fS~ag~~-~~~d~r~~L~~~~~~~v-~~~~P~ 113 (376)
T 3g7u_A 72 IDGIIGGPPCQGFSSIGKG-NPDDSRNQLYMHFYRLV-SELQPL 113 (376)
T ss_dssp CCEEEECCCCCTTC--------CHHHHHHHHHHHHHH-HHHCCS
T ss_pred eeEEEecCCCCCcccccCC-CCCCchHHHHHHHHHHH-HHhCCC
Confidence 999999999 3 333 11112234666655533 446787
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00028 Score=72.74 Aligned_cols=117 Identities=15% Similarity=0.077 Sum_probs=81.3
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhcc---CCCCcccceeeeeecccccc----CCCC
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNS---GNLNRELKVSPLVCNVRQLC----FKPA 383 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g---~~~~~~~~i~~~~~Da~~l~----~~~~ 383 (494)
+..+||=+|-|.|+++-|++. ++...|..+|||+..++.|++-+.... .+.....+++++.+|+...- -...
T Consensus 205 ~pkrVLIIGgGdG~~~revlk-h~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVK-LKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHT-TCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCcHHHHHHHHh-cCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 457899999999999999876 456789999999999999998753211 11111245788999987651 1235
Q ss_pred CeeEEEEcCCCccccCCc--cchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 384 CVDGIVTDLPFGKRVGSK--SNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 384 ~~D~IVtNPPYG~r~~~~--~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
.||+||.|.+=....... ......++.|++.+.+.|+|+ |.++.=
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~-GVlv~Q 330 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQD-GKYFTQ 330 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEE-EEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCC-CEEEEe
Confidence 799999996522111111 122344567889999999999 987753
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00012 Score=72.95 Aligned_cols=65 Identities=20% Similarity=0.225 Sum_probs=46.2
Q ss_pred ceeeeeeccccc-c-CCCCCeeEEEEcCCCccccCC---c---------cchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 367 KVSPLVCNVRQL-C-FKPACVDGIVTDLPFGKRVGS---K---------SNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 367 ~i~~~~~Da~~l-~-~~~~~~D~IVtNPPYG~r~~~---~---------~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
.+.++++|+.+. + +++++||+||+||||...... . .+....+..++.++.++|+|+ |.+++..++
T Consensus 21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~-G~l~i~~~d 99 (297)
T 2zig_A 21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPG-GRLVIVVGD 99 (297)
T ss_dssp CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEECC
T ss_pred CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCC-cEEEEEECC
Confidence 457899999884 2 456799999999999643211 0 011223456788999999999 999988774
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00043 Score=70.16 Aligned_cols=100 Identities=14% Similarity=0.060 Sum_probs=67.3
Q ss_pred CCEEEEEcCCcChHHHHHHhcC-CCCeE-EEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC---CCCCee
Q psy19 312 GDVFLDPMCGGGTIPVECSLSY-PHTFF-VCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF---KPACVD 386 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~-~~~~v-~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~---~~~~~D 386 (494)
.-+++|+|||.|++.+.+.... +...+ +++|+|+.+++..+.|... .++++|+.++.. +...+|
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-----------~~~~~DI~~~~~~~i~~~~~D 78 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-----------EVQVKNLDSISIKQIESLNCN 78 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-----------CCBCCCTTTCCHHHHHHTCCC
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-----------CcccCChhhcCHHHhccCCCC
Confidence 4589999999999988776652 11356 7999999999999999752 145667766632 123689
Q ss_pred EEEEcCC---C-----ccccCCccchHHHHHHHHHHHhhcc--cCC
Q psy19 387 GIVTDLP---F-----GKRVGSKSNNFLLYRLFLIEIGKIV--RPQ 422 (494)
Q Consensus 387 ~IVtNPP---Y-----G~r~~~~~~~~~ly~~fL~~l~rvL--kpg 422 (494)
+++..|| | |.+.+....-..|+..+++.+.+.+ +|.
T Consensus 79 il~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~ 124 (327)
T 3qv2_A 79 TWFMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPK 124 (327)
T ss_dssp EEEECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCS
T ss_pred EEEecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCC
Confidence 9999999 7 4443322223356666555344455 566
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00014 Score=65.16 Aligned_cols=78 Identities=14% Similarity=0.031 Sum_probs=58.5
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcCh-HHHHHHh-cCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGT-IPVECSL-SYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGt-ilIEAA~-~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
.-|.+.||..+..-. .++.+|||+|||+|. .+..++. . +..|+++|+++.++. +
T Consensus 19 ~~m~e~LaeYI~~~~--~~~~rVlEVG~G~g~~vA~~La~~~--g~~V~atDInp~Av~--------------------~ 74 (153)
T 2k4m_A 19 SHMWNDLAVYIIRCS--GPGTRVVEVGAGRFLYVSDYIRKHS--KVDLVLTDIKPSHGG--------------------I 74 (153)
T ss_dssp CHHHHHHHHHHHHHS--CSSSEEEEETCTTCCHHHHHHHHHS--CCEEEEECSSCSSTT--------------------E
T ss_pred hhHHHHHHHHHHhcC--CCCCcEEEEccCCChHHHHHHHHhC--CCeEEEEECCccccc--------------------e
Confidence 346788888876544 456799999999994 8888775 5 678999999998755 5
Q ss_pred eeeccccccCCC-CCeeEE-EEcCCC
Q psy19 371 LVCNVRQLCFKP-ACVDGI-VTDLPF 394 (494)
Q Consensus 371 ~~~Da~~l~~~~-~~~D~I-VtNPPY 394 (494)
++.|+++..+.. ..+|+| -.|||-
T Consensus 75 v~dDiF~P~~~~Y~~~DLIYsirPP~ 100 (153)
T 2k4m_A 75 VRDDITSPRMEIYRGAALIYSIRPPA 100 (153)
T ss_dssp ECCCSSSCCHHHHTTEEEEEEESCCT
T ss_pred EEccCCCCcccccCCcCEEEEcCCCH
Confidence 567777642211 379999 889993
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00071 Score=69.25 Aligned_cols=95 Identities=12% Similarity=-0.032 Sum_probs=71.9
Q ss_pred cchHHHHHHHHHHhCCCC------CCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccc
Q psy19 294 TLKPTIAYNMVRLASPIP------GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELK 367 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~~------g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~ 367 (494)
-.+++++..++..++..+ ++.|||+|.|.|++...++......+++++|+|+..+...+... .. ++
T Consensus 35 L~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~~-------~~ 106 (353)
T 1i4w_A 35 LWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-EG-------SP 106 (353)
T ss_dssp BCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-TT-------SS
T ss_pred cCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-cC-------CC
Confidence 368999999999998763 58999999999999988876433458999999999998887765 21 34
Q ss_pred eeeeeecccccc-C----CCC--------------CeeEEEEcCCCcc
Q psy19 368 VSPLVCNVRQLC-F----KPA--------------CVDGIVTDLPFGK 396 (494)
Q Consensus 368 i~~~~~Da~~l~-~----~~~--------------~~D~IVtNPPYG~ 396 (494)
+.++++|+.++. + ... ..=.||.|.||..
T Consensus 107 l~ii~~D~l~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~vvaNLPYnI 154 (353)
T 1i4w_A 107 LQILKRDPYDWSTYSNLIDEERIFVPEVQSSDHINDKFLTVANVTGEG 154 (353)
T ss_dssp CEEECSCTTCHHHHHHHTTTTCSSCCCCCCTTSEEEEEEEEEECCSTT
T ss_pred EEEEECCccchhhHHHhhcccccccccccccccCCCceEEEEECCCch
Confidence 688999987653 1 111 0127999999954
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0024 Score=62.93 Aligned_cols=110 Identities=11% Similarity=-0.023 Sum_probs=63.4
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeE
Q psy19 308 SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG 387 (494)
Q Consensus 308 ~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~ 387 (494)
..+++.+|||+|||.|..+-.|+...+...+.|+|+.-.+. .... .+. .....+...+.++....+..+.+|+
T Consensus 71 ~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~----~~pi-~~~--~~g~~ii~~~~~~dv~~l~~~~~Dl 143 (277)
T 3evf_A 71 YVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH----EKPM-NVQ--SLGWNIITFKDKTDIHRLEPVKCDT 143 (277)
T ss_dssp SSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTC----CCCC-CCC--BTTGGGEEEECSCCTTTSCCCCCSE
T ss_pred CCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCc----cccc-ccC--cCCCCeEEEeccceehhcCCCCccE
Confidence 45688899999999999999888764434677777753210 0000 000 0001223344444333455678999
Q ss_pred EEEcCCCccccCCccchHHHHH--HHHHHHhhcccCCCcEEEE
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYR--LFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~--~fL~~l~rvLkpg~G~lvl 428 (494)
|++|.-.. .+.. . .+-++ .+|..+.++|+||.|.+++
T Consensus 144 VlsD~apn--sG~~-~-~D~~rs~~LL~~a~~~LkpG~G~FV~ 182 (277)
T 3evf_A 144 LLCDIGES--SSSS-V-TEGERTVRVLDTVEKWLACGVDNFCV 182 (277)
T ss_dssp EEECCCCC--CSCH-H-HHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEecCccC--cCch-H-HHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 99996332 2221 1 11111 2377888999996466665
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00041 Score=69.98 Aligned_cols=66 Identities=15% Similarity=0.209 Sum_probs=47.8
Q ss_pred ceeeeeeccccc-c-CCCCCeeEEEEcCCCccccCCc------cchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 367 KVSPLVCNVRQL-C-FKPACVDGIVTDLPFGKRVGSK------SNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 367 ~i~~~~~Da~~l-~-~~~~~~D~IVtNPPYG~r~~~~------~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
...++++|+.+. . +++++||+|++||||+...... .+....+..++.++.++|+|+ |.+++...+.
T Consensus 14 ~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~-G~i~i~~~d~ 87 (323)
T 1boo_A 14 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPD-GSFVVDFGGA 87 (323)
T ss_dssp SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEECCC
T ss_pred CceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCC-cEEEEEECCE
Confidence 457889998763 3 5567999999999997653211 112334567788899999999 9999877653
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00045 Score=67.35 Aligned_cols=64 Identities=11% Similarity=0.090 Sum_probs=45.3
Q ss_pred eeeeeccccc--cCCCCCeeEEEEcCCCccccC------CccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 369 SPLVCNVRQL--CFKPACVDGIVTDLPFGKRVG------SKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 369 ~~~~~Da~~l--~~~~~~~D~IVtNPPYG~r~~------~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
.++++|+.+. .++++++|+|++||||+.... ...+-...+..++.++.++|+|+ |.+++...+.
T Consensus 6 ~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~-g~i~v~~~d~ 77 (260)
T 1g60_A 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKD-GSLYIFNTPF 77 (260)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEE-EEEEEEECHH
T ss_pred eEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCC-eEEEEEcCcH
Confidence 5788998654 245579999999999985421 11222345667788889999998 9888775543
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00038 Score=67.91 Aligned_cols=101 Identities=14% Similarity=0.027 Sum_probs=61.3
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCC----CCeEEEEeC--CHHHHHHHHHHHHhccCCCCcccceeeeee-ccccccCC
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYP----HTFFVCGDI--NEKLVLKTQANVLHNSGNLNRELKVSPLVC-NVRQLCFK 381 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~----~~~v~G~Di--d~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~-Da~~l~~~ 381 (494)
+++|.+|+|+||+-|+-+..|+..-. ...++|+|+ .|... ... ++ ..+.+.++ |+++++
T Consensus 71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~-------~~~----Gv-~~i~~~~G~Df~~~~-- 136 (269)
T 2px2_A 71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM-------QSY----GW-NIVTMKSGVDVFYKP-- 136 (269)
T ss_dssp CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC-------CST----TG-GGEEEECSCCGGGSC--
T ss_pred CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcc-------cCC----Cc-eEEEeeccCCccCCC--
Confidence 57899999999999999998887511 124455552 22100 000 11 12344446 999864
Q ss_pred CCCeeEEEEcCCCccccCCc--cchHHHHHHHHHHHhhcccCCCc-EEEE
Q psy19 382 PACVDGIVTDLPFGKRVGSK--SNNFLLYRLFLIEIGKIVRPQIG-RAIL 428 (494)
Q Consensus 382 ~~~~D~IVtNPPYG~r~~~~--~~~~~ly~~fL~~l~rvLkpg~G-~lvl 428 (494)
...+|+|+||.--. .+.. +....++ .|.-+.++|+|| | .+++
T Consensus 137 ~~~~DvVLSDMAPn--SG~~~vD~~Rs~~--aL~~A~~~Lk~g-G~~Fvv 181 (269)
T 2px2_A 137 SEISDTLLCDIGES--SPSAEIEEQRTLR--ILEMVSDWLSRG-PKEFCI 181 (269)
T ss_dssp CCCCSEEEECCCCC--CSCHHHHHHHHHH--HHHHHHHHHTTC-CSEEEE
T ss_pred CCCCCEEEeCCCCC--CCccHHHHHHHHH--HHHHHHHHhhcC-CcEEEE
Confidence 35799999997322 2222 1122333 666677899999 7 6665
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0015 Score=65.12 Aligned_cols=76 Identities=12% Similarity=-0.050 Sum_probs=55.6
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCe-EEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC---C-CC
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTF-FVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF---K-PA 383 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~-v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~---~-~~ 383 (494)
...+.+++|+|||.|++.+.+....-... ++++|+|+.+++..+.|... ..+..+|+.++.. + .+
T Consensus 13 ~~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~~----------~~~~~~DI~~i~~~~i~~~~ 82 (295)
T 2qrv_A 13 KRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQG----------KIMYVGDVRSVTQKHIQEWG 82 (295)
T ss_dssp CCCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTTT----------CEEEECCGGGCCHHHHHHTC
T ss_pred cCCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCCC----------CceeCCChHHccHHHhcccC
Confidence 34567899999999999887766521222 58999999999988888531 1356778777631 1 13
Q ss_pred CeeEEEEcCCC
Q psy19 384 CVDGIVTDLPF 394 (494)
Q Consensus 384 ~~D~IVtNPPY 394 (494)
.+|+|+.-||.
T Consensus 83 ~~Dll~ggpPC 93 (295)
T 2qrv_A 83 PFDLVIGGSPC 93 (295)
T ss_dssp CCSEEEECCCC
T ss_pred CcCEEEecCCC
Confidence 69999999996
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0037 Score=61.98 Aligned_cols=103 Identities=10% Similarity=-0.116 Sum_probs=75.3
Q ss_pred CCEEEEEcCCcChHHHHHHhcC-----CCCeEEEEeCCH--------------------------HHHHHHHHHHHhccC
Q psy19 312 GDVFLDPMCGGGTIPVECSLSY-----PHTFFVCGDINE--------------------------KLVLKTQANVLHNSG 360 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~-----~~~~v~G~Did~--------------------------~al~~Ar~Nl~~~g~ 360 (494)
...||++||..|.-++.+|... ++.+|+++|... ..++.+++|++.+|+
T Consensus 107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl 186 (282)
T 2wk1_A 107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL 186 (282)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence 4589999999998877665432 367899999642 147789999998875
Q ss_pred CCCcccceeeeeeccccc-c-CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 361 NLNRELKVSPLVCNVRQL-C-FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 361 ~~~~~~~i~~~~~Da~~l-~-~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
. .+++.++.+|+.+. + ++.++||+|..|- +...-|...|+.+...|+|| |.+++
T Consensus 187 ~---~~~I~li~Gda~etL~~~~~~~~d~vfIDa----------D~y~~~~~~Le~~~p~L~pG-GiIv~ 242 (282)
T 2wk1_A 187 L---DEQVRFLPGWFKDTLPTAPIDTLAVLRMDG----------DLYESTWDTLTNLYPKVSVG-GYVIV 242 (282)
T ss_dssp C---STTEEEEESCHHHHSTTCCCCCEEEEEECC----------CSHHHHHHHHHHHGGGEEEE-EEEEE
T ss_pred C---cCceEEEEeCHHHHHhhCCCCCEEEEEEcC----------CccccHHHHHHHHHhhcCCC-EEEEE
Confidence 1 36789999999764 3 3346899999873 12233567788899999998 86554
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0016 Score=65.69 Aligned_cols=64 Identities=16% Similarity=0.273 Sum_probs=46.6
Q ss_pred eeee-eeccccc--cCCCCCeeEEEEcCCCccccCC---ccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 368 VSPL-VCNVRQL--CFKPACVDGIVTDLPFGKRVGS---KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 368 i~~~-~~Da~~l--~~~~~~~D~IVtNPPYG~r~~~---~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
..++ ++|+.+. .++++++|+|++||||+...+. ..+....+...+.++.++|+|+ |.+++....
T Consensus 39 ~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~-G~i~i~~~~ 108 (319)
T 1eg2_A 39 RHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPT-GSIAIFGGL 108 (319)
T ss_dssp EEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEE-EEEEEEECS
T ss_pred ceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCC-eEEEEEcCc
Confidence 4677 9998764 3456799999999999864211 1223345567788899999999 998887664
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0014 Score=64.72 Aligned_cols=108 Identities=11% Similarity=-0.029 Sum_probs=63.6
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee--eccccccCCCCCe
Q psy19 308 SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV--CNVRQLCFKPACV 385 (494)
Q Consensus 308 ~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~--~Da~~l~~~~~~~ 385 (494)
.++++.+|||+|||.|..+..|+...+...++|+|+...+...+... ... ...+.... .|+.. +....+
T Consensus 87 ~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~------g~~ii~~~~~~dv~~--l~~~~~ 157 (282)
T 3gcz_A 87 YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTL------GWNLIRFKDKTDVFN--MEVIPG 157 (282)
T ss_dssp SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBT------TGGGEEEECSCCGGG--SCCCCC
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccC------CCceEEeeCCcchhh--cCCCCc
Confidence 45788899999999999999988765545788999875421111100 000 11111222 24444 345789
Q ss_pred eEEEEcCCCccccCCccchHHHHH--HHHHHHhhcccCC-CcEEEE
Q psy19 386 DGIVTDLPFGKRVGSKSNNFLLYR--LFLIEIGKIVRPQ-IGRAIL 428 (494)
Q Consensus 386 D~IVtNPPYG~r~~~~~~~~~ly~--~fL~~l~rvLkpg-~G~lvl 428 (494)
|+|+||.-.. .|.. .. +-++ .+|.-+.++|+|| +|.+++
T Consensus 158 DvVLSDmApn--sG~~-~~-D~~rs~~LL~~A~~~Lk~g~~G~Fv~ 199 (282)
T 3gcz_A 158 DTLLCDIGES--SPSI-AV-EEQRTLRVLNCAKQWLQEGNYTEFCI 199 (282)
T ss_dssp SEEEECCCCC--CSCH-HH-HHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CEEEecCccC--CCCh-HH-HHHHHHHHHHHHHHHcCCCCCCcEEE
Confidence 9999997443 3322 11 1111 2366778899986 276665
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0031 Score=63.97 Aligned_cols=72 Identities=24% Similarity=0.142 Sum_probs=53.4
Q ss_pred CEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC---CCCCeeEE
Q psy19 313 DVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF---KPACVDGI 388 (494)
Q Consensus 313 ~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~---~~~~~D~I 388 (494)
-+++|+|||.|++.+.+....- ...++++|+|+.+++..+.|.... .+.++|+.++.. +...+|++
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~----------~~~~~DI~~~~~~~~~~~~~D~l 73 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPET----------NLLNRNIQQLTPQVIKKWNVDTI 73 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTS----------CEECCCGGGCCHHHHHHTTCCEE
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCC----------ceeccccccCCHHHhccCCCCEE
Confidence 3799999999999887765521 135789999999999999986421 355677776632 22369999
Q ss_pred EEcCCC
Q psy19 389 VTDLPF 394 (494)
Q Consensus 389 VtNPPY 394 (494)
+.-||=
T Consensus 74 ~ggpPC 79 (333)
T 4h0n_A 74 LMSPPC 79 (333)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 999993
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0055 Score=61.21 Aligned_cols=96 Identities=14% Similarity=0.216 Sum_probs=64.9
Q ss_pred EEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC-CCCeeEEEEcC
Q psy19 314 VFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK-PACVDGIVTDL 392 (494)
Q Consensus 314 ~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~-~~~~D~IVtNP 392 (494)
+|+|+|||.|++.+-+-... .-.++++|+|+.+++..+.|.. ..++.+|+.++... -..+|+++.-|
T Consensus 2 kvidLFsG~GG~~~G~~~aG-~~~v~a~e~d~~a~~ty~~N~~-----------~~~~~~DI~~i~~~~~~~~D~l~ggp 69 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKAG-FRIICANEYDKSIWKTYESNHS-----------AKLIKGDISKISSDEFPKCDGIIGGP 69 (331)
T ss_dssp EEEEESCTTCHHHHHHHHTT-CEEEEEEECCTTTHHHHHHHCC-----------SEEEESCGGGCCGGGSCCCSEEECCC
T ss_pred eEEEeCcCccHHHHHHHHCC-CEEEEEEeCCHHHHHHHHHHCC-----------CCcccCChhhCCHhhCCcccEEEecC
Confidence 69999999999877554442 2356799999999999988843 14677888887421 13689999999
Q ss_pred C---C---ccccCCccchHHHHHHHHHHHhhcccCC
Q psy19 393 P---F---GKRVGSKSNNFLLYRLFLIEIGKIVRPQ 422 (494)
Q Consensus 393 P---Y---G~r~~~~~~~~~ly~~fL~~l~rvLkpg 422 (494)
| | |.+.+....-..|+..+++ +.+.++|.
T Consensus 70 PCQ~fS~ag~~~g~~d~R~~L~~~~~r-~i~~~~Pk 104 (331)
T 3ubt_Y 70 PSQSWSEGGSLRGIDDPRGKLFYEYIR-ILKQKKPI 104 (331)
T ss_dssp CGGGTEETTEECCTTCGGGHHHHHHHH-HHHHHCCS
T ss_pred CCCCcCCCCCccCCCCchhHHHHHHHH-HHhccCCe
Confidence 9 3 3333322223356666554 44456887
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.014 Score=57.86 Aligned_cols=113 Identities=13% Similarity=-0.032 Sum_probs=68.6
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee-ccccccCCCCCee
Q psy19 308 SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC-NVRQLCFKPACVD 386 (494)
Q Consensus 308 ~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~-Da~~l~~~~~~~D 386 (494)
.++++..|||+||+.|.+...++.......|+|+|+-..--+.=+ ..... +. ..+.+..+ |++.++. ..+|
T Consensus 91 ~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~-~~~ql----~w-~lV~~~~~~Dv~~l~~--~~~D 162 (321)
T 3lkz_A 91 FLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ-LVQSY----GW-NIVTMKSGVDVFYRPS--ECCD 162 (321)
T ss_dssp SCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC-CCCBT----TG-GGEEEECSCCTTSSCC--CCCS
T ss_pred CCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc-hhhhc----CC-cceEEEeccCHhhCCC--CCCC
Confidence 457888999999999999998887754457999998654110000 00000 00 12556665 8887754 5699
Q ss_pred EEEEcCCCccccCCcc-chHHHHHHHHHHHhhcccCCCcEEEE--Eec
Q psy19 387 GIVTDLPFGKRVGSKS-NNFLLYRLFLIEIGKIVRPQIGRAIL--LTS 431 (494)
Q Consensus 387 ~IVtNPPYG~r~~~~~-~~~~ly~~fL~~l~rvLkpg~G~lvl--lt~ 431 (494)
+|+||.- +..+... +..... ..|+-+.++|+++.|.+++ +.|
T Consensus 163 ~ivcDig--eSs~~~~ve~~Rtl-~vLel~~~wL~~~~~~f~~KVl~p 207 (321)
T 3lkz_A 163 TLLCDIG--ESSSSAEVEEHRTI-RVLEMVEDWLHRGPREFCVKVLCP 207 (321)
T ss_dssp EEEECCC--CCCSCHHHHHHHHH-HHHHHHHHHHTTCCCEEEEEESCT
T ss_pred EEEEECc--cCCCChhhhhhHHH-HHHHHHHHHhccCCCcEEEEEcCC
Confidence 9999974 3333321 111112 2566677888876455544 555
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.019 Score=55.41 Aligned_cols=114 Identities=16% Similarity=0.047 Sum_probs=70.2
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee-ccccccCCCCCee
Q psy19 308 SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC-NVRQLCFKPACVD 386 (494)
Q Consensus 308 ~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~-Da~~l~~~~~~~D 386 (494)
.++++.+|+|+||+.|...-.++.......|+|+|+-+.-.+.= ...+..| . ..+.|.++ |++.++. ..+|
T Consensus 75 ~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P-~~~~s~g----w-n~v~fk~gvDv~~~~~--~~~D 146 (267)
T 3p8z_A 75 MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEP-VPMSTYG----W-NIVKLMSGKDVFYLPP--EKCD 146 (267)
T ss_dssp SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCCTT----T-TSEEEECSCCGGGCCC--CCCS
T ss_pred CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCc-chhhhcC----c-CceEEEeccceeecCC--cccc
Confidence 45788899999999999999888775545799999865321000 0001111 1 34678888 9887754 5799
Q ss_pred EEEEcCCCccccCCcc-chHHHHHHHHHHHhhcccCCCcEEE-EEecCH
Q psy19 387 GIVTDLPFGKRVGSKS-NNFLLYRLFLIEIGKIVRPQIGRAI-LLTSDR 433 (494)
Q Consensus 387 ~IVtNPPYG~r~~~~~-~~~~ly~~fL~~l~rvLkpg~G~lv-llt~~~ 433 (494)
.|+||. |...+... +..... +.|+-+.++|+++ -.++ ++.|..
T Consensus 147 tllcDI--geSs~~~~vE~~Rtl-rvLela~~wL~~~-~fc~KVl~py~ 191 (267)
T 3p8z_A 147 TLLCDI--GESSPSPTVEESRTI-RVLKMVEPWLKNN-QFCIKVLNPYM 191 (267)
T ss_dssp EEEECC--CCCCSCHHHHHHHHH-HHHHHHGGGCSSC-EEEEEESCCCS
T ss_pred EEEEec--CCCCCChhhhhhHHH-HHHHHHHHhcccC-CEEEEEccCCC
Confidence 999996 33222211 111112 2666778889875 3222 456654
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.027 Score=58.08 Aligned_cols=112 Identities=11% Similarity=0.009 Sum_probs=66.2
Q ss_pred CCEEEEEcCCcChHHHHHHhc-----------------CCCCeEEEEeCC-----------HHHHHHHHHHHHhccCCCC
Q psy19 312 GDVFLDPMCGGGTIPVECSLS-----------------YPHTFFVCGDIN-----------EKLVLKTQANVLHNSGNLN 363 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~-----------------~~~~~v~G~Did-----------~~al~~Ar~Nl~~~g~~~~ 363 (494)
..+|+|.|||+|...+.++.. .|...|+..|+- +...+.++.. .|..
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~---~g~~-- 127 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKE---NGRK-- 127 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHH---TCCC--
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhh---ccCC--
Confidence 478999999999776655443 245678888976 4444333221 1210
Q ss_pred cccceeeeeec---cccccCCCCCeeEEEEcCCCccccCCc-----------------------cchHHH--------HH
Q psy19 364 RELKVSPLVCN---VRQLCFKPACVDGIVTDLPFGKRVGSK-----------------------SNNFLL--------YR 409 (494)
Q Consensus 364 ~~~~i~~~~~D---a~~l~~~~~~~D~IVtNPPYG~r~~~~-----------------------~~~~~l--------y~ 409 (494)
...-++.+. +....++++++|+|.+|--...-.... ....+. +.
T Consensus 128 --~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~ 205 (384)
T 2efj_A 128 --IGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFT 205 (384)
T ss_dssp --TTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHH
T ss_pred --CCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHH
Confidence 011344443 333357788999999974432111000 112223 34
Q ss_pred HHHHHHhhcccCCCcEEEEEec
Q psy19 410 LFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 410 ~fL~~l~rvLkpg~G~lvllt~ 431 (494)
.||+.-++.|+|| |++++.+.
T Consensus 206 ~FL~~Ra~eL~pG-G~mvl~~~ 226 (384)
T 2efj_A 206 TFLRIHSEELISR-GRMLLTFI 226 (384)
T ss_dssp HHHHHHHHHEEEE-EEEEEEEE
T ss_pred HHHHHHHHHhccC-CeEEEEEe
Confidence 5888889999999 99998755
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.018 Score=59.31 Aligned_cols=119 Identities=11% Similarity=-0.019 Sum_probs=66.8
Q ss_pred CCEEEEEcCCcChHHHHHHhc--------C-------CCCeEEEEeCCHHHHHHHHHHHHhccC-------CCCccccee
Q psy19 312 GDVFLDPMCGGGTIPVECSLS--------Y-------PHTFFVCGDINEKLVLKTQANVLHNSG-------NLNRELKVS 369 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~--------~-------~~~~v~G~Did~~al~~Ar~Nl~~~g~-------~~~~~~~i~ 369 (494)
..+|+|.|||+|...+.++.. + |...|+..|+-.......=+++....- ..+......
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 578999999999776655321 1 456788888765544333333332100 000000112
Q ss_pred eeee---ccccccCCCCCeeEEEEcCCCccccCCccc----------------------hHH--------HHHHHHHHHh
Q psy19 370 PLVC---NVRQLCFKPACVDGIVTDLPFGKRVGSKSN----------------------NFL--------LYRLFLIEIG 416 (494)
Q Consensus 370 ~~~~---Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~----------------------~~~--------ly~~fL~~l~ 416 (494)
+..+ .+..-.++++++|+|+++--...-...... ..+ -+..||+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 332334677899999998553211100000 112 3445899999
Q ss_pred hcccCCCcEEEEEec
Q psy19 417 KIVRPQIGRAILLTS 431 (494)
Q Consensus 417 rvLkpg~G~lvllt~ 431 (494)
+.|+|| |++++.+.
T Consensus 213 ~eL~pG-G~mvl~~~ 226 (374)
T 3b5i_A 213 AEVKRG-GAMFLVCL 226 (374)
T ss_dssp HHEEEE-EEEEEEEE
T ss_pred HHhCCC-CEEEEEEe
Confidence 999999 99998654
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.09 Score=52.19 Aligned_cols=107 Identities=10% Similarity=-0.118 Sum_probs=60.6
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcc-cceeeee-eccccccCCCCCee
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRE-LKVSPLV-CNVRQLCFKPACVD 386 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~-~~i~~~~-~Da~~l~~~~~~~D 386 (494)
..++.+|||+||+.|.++-.++...+...++|+|+...+.. ......... +.+.+.. .|+..+ ..+.+|
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~-------~P~~~~~~~~~iv~~~~~~di~~l--~~~~~D 149 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHE-------KPIHMQTLGWNIVKFKDKSNVFTM--PTEPSD 149 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSC-------CCCCCCBTTGGGEEEECSCCTTTS--CCCCCS
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccc-------ccccccccCCceEEeecCceeeec--CCCCcC
Confidence 46889999999999999998886544457889998643200 000000000 1111211 244433 346899
Q ss_pred EEEEcCCCccccCCccchHHHH--HHHHHHHhhcccCCCcEEEE
Q psy19 387 GIVTDLPFGKRVGSKSNNFLLY--RLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 387 ~IVtNPPYG~r~~~~~~~~~ly--~~fL~~l~rvLkpg~G~lvl 428 (494)
+|++|.-.. .|.. .. +-+ -.+|.-+.++|+||.|.+++
T Consensus 150 lVlsD~APn--sG~~-~~-D~~rs~~LL~~A~~~LkpG~G~FV~ 189 (300)
T 3eld_A 150 TLLCDIGES--SSNP-LV-ERDRTMKVLENFERWKHVNTENFCV 189 (300)
T ss_dssp EEEECCCCC--CSSH-HH-HHHHHHHHHHHHHHHCCTTCCEEEE
T ss_pred EEeecCcCC--CCCH-HH-HHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 999996332 2322 11 111 12366778899996366655
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.029 Score=55.78 Aligned_cols=99 Identities=14% Similarity=0.056 Sum_probs=64.6
Q ss_pred CCCCCEEEEEcC------CcChHHHHHHhcCCC-CeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC
Q psy19 309 PIPGDVFLDPMC------GGGTIPVECSLSYPH-TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK 381 (494)
Q Consensus 309 ~~~g~~VLDP~C------GSGtilIEAA~~~~~-~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~ 381 (494)
+..|.+|||+|| --|+..+ ....|. +.|+++|+.+-.. ..+ .++++|+..+..
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~VL--r~~~p~g~~VVavDL~~~~s---------------da~--~~IqGD~~~~~~- 166 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTAVL--RQWLPTGTLLVDSDLNDFVS---------------DAD--STLIGDCATVHT- 166 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHHHH--HHHSCTTCEEEEEESSCCBC---------------SSS--EEEESCGGGEEE-
T ss_pred ecCCCEEEeCCCCCCCCCCCcHHHH--HHhCCCCcEEEEeeCccccc---------------CCC--eEEEcccccccc-
Confidence 346899999997 4566422 223453 6999999987420 111 359999877644
Q ss_pred CCCeeEEEEcCCC---ccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 382 PACVDGIVTDLPF---GKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 382 ~~~~D~IVtNPPY---G~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
.+.||+||+|+-- |..-........|....+.-+.++|+|| |.+++
T Consensus 167 ~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpG-GsFvV 215 (344)
T 3r24_A 167 ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALG-GSIAV 215 (344)
T ss_dssp SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEE-EEEEE
T ss_pred CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCC-CEEEE
Confidence 3689999999742 2211111113346777777888899999 98877
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=95.11 E-value=0.029 Score=59.61 Aligned_cols=73 Identities=16% Similarity=0.170 Sum_probs=52.6
Q ss_pred CCEEEEEcCCcChHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC---------
Q psy19 312 GDVFLDPMCGGGTIPVECSLSYPHT-FFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK--------- 381 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~~~~-~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~--------- 381 (494)
.-+++|+|||.|++.+.+... |. .++++|+|+.+++..+.|.... ....++.+|+.++...
T Consensus 88 ~~~viDLFaG~GGlslG~~~a--G~~~v~avE~d~~A~~ty~~N~~~~-------p~~~~~~~DI~~i~~~~~~~~~~~~ 158 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESI--GGQCVFTSEWNKHAVRTYKANHYCD-------PATHHFNEDIRDITLSHQEGVSDEA 158 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTT--TEEEEEEECCCHHHHHHHHHHSCCC-------TTTCEEESCTHHHHCTTCTTSCHHH
T ss_pred cceEEEecCCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHhcccC-------CCcceeccchhhhhhccccccchhh
Confidence 458999999999998766554 43 4789999999999999886311 1123566777665311
Q ss_pred --------CCCeeEEEEcCC
Q psy19 382 --------PACVDGIVTDLP 393 (494)
Q Consensus 382 --------~~~~D~IVtNPP 393 (494)
...+|+|+.-||
T Consensus 159 ~~~~i~~~~~~~Dvl~gGpP 178 (482)
T 3me5_A 159 AAEHIRQHIPEHDVLLAGFP 178 (482)
T ss_dssp HHHHHHHHSCCCSEEEEECC
T ss_pred HHhhhhhcCCCCCEEEecCC
Confidence 136899999999
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=95.09 E-value=0.053 Score=55.47 Aligned_cols=132 Identities=16% Similarity=0.036 Sum_probs=78.4
Q ss_pred chHHHHHHHHHHhCC---CCCCEEEEEcCCcChHHHHHHhc----------------CCCCeEEEEeCCHHHHHHHHHHH
Q psy19 295 LKPTIAYNMVRLASP---IPGDVFLDPMCGGGTIPVECSLS----------------YPHTFFVCGDINEKLVLKTQANV 355 (494)
Q Consensus 295 L~e~lAa~ll~la~~---~~g~~VLDP~CGSGtilIEAA~~----------------~~~~~v~G~Did~~al~~Ar~Nl 355 (494)
+.+.+-.++..+... ...-+|+|.||++|...+.+... .|...|+..|+-.......-+++
T Consensus 32 ~~~~l~~ai~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L 111 (359)
T 1m6e_X 32 TKPITEAAITALYSGDTVTTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSL 111 (359)
T ss_dssp THHHHHHHHHHHHSSSSSSSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTT
T ss_pred HHHHHHHHHHHHhhccCCCCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhc
Confidence 344554444444332 23357999999999654433222 34567899998887777777666
Q ss_pred HhccCCCCcccceeeeeec---cccccCCCCCeeEEEEcCCCcc--ccC---------------Cc--------cchHHH
Q psy19 356 LHNSGNLNRELKVSPLVCN---VRQLCFKPACVDGIVTDLPFGK--RVG---------------SK--------SNNFLL 407 (494)
Q Consensus 356 ~~~g~~~~~~~~i~~~~~D---a~~l~~~~~~~D~IVtNPPYG~--r~~---------------~~--------~~~~~l 407 (494)
..... . ...-+..+. +....++++++|+|.+|--... +.. .. .....-
T Consensus 112 ~~~~~--~--~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D 187 (359)
T 1m6e_X 112 PIEND--V--DGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQED 187 (359)
T ss_dssp TTSCS--C--TTCEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHH
T ss_pred chhcc--c--CCCEEEEecchhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHH
Confidence 53110 0 011244443 3334577889999998743211 100 00 112344
Q ss_pred HHHHHHHHhhcccCCCcEEEEEec
Q psy19 408 YRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 408 y~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+..||+.-++.|+|| |++++.+.
T Consensus 188 ~~~FL~~Ra~EL~pG-G~mvl~~~ 210 (359)
T 1m6e_X 188 HALFLRCRAQEVVPG-GRMVLTIL 210 (359)
T ss_dssp HHHHHHHHHHHBCTT-CEEEEEEE
T ss_pred HHHHHHHHHHHhcCC-ceEEEEEe
Confidence 667899999999999 99998654
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=92.85 E-value=0.15 Score=58.77 Aligned_cols=43 Identities=12% Similarity=-0.016 Sum_probs=35.1
Q ss_pred CCEEEEEcCCcChHHHHHHhcCCCC--eEEEEeCCHHHHHHHHHHHH
Q psy19 312 GDVFLDPMCGGGTIPVECSLSYPHT--FFVCGDINEKLVLKTQANVL 356 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~~~~--~v~G~Did~~al~~Ar~Nl~ 356 (494)
.-+++|+|||.|++.+-+... |. .++++|+|+.+++..+.|..
T Consensus 540 ~l~~iDLFaG~GGlslGl~~A--G~~~vv~avEid~~A~~ty~~N~p 584 (1002)
T 3swr_A 540 KLRTLDVFSGCGGLSEGFHQA--GISDTLWAIEMWDPAAQAFRLNNP 584 (1002)
T ss_dssp CEEEEEESCTTSHHHHHHHHH--TSEEEEEEECSSHHHHHHHHHHCT
T ss_pred CCeEEEeccCccHHHHHHHHC--CCCceEEEEECCHHHHHHHHHhCC
Confidence 457999999999998766554 43 57899999999999988854
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=92.62 E-value=0.27 Score=50.93 Aligned_cols=49 Identities=6% Similarity=-0.155 Sum_probs=43.0
Q ss_pred CCCCCEEEEEcCCcChHHHHHH-hcCC-CCeEEEEeCCHHHHHHHHHHHHh
Q psy19 309 PIPGDVFLDPMCGGGTIPVECS-LSYP-HTFFVCGDINEKLVLKTQANVLH 357 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA-~~~~-~~~v~G~Did~~al~~Ar~Nl~~ 357 (494)
.+++.+|+|.||+.|.+++.++ ...+ ..+|+++|-+|.+.+..++|+..
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~ 274 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 274 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 4688999999999999999877 4433 37999999999999999999987
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.29 E-value=0.4 Score=48.34 Aligned_cols=102 Identities=12% Similarity=0.075 Sum_probs=63.0
Q ss_pred HHhCCCCCCEEEEEcCCc-ChHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc-c-cC
Q psy19 305 RLASPIPGDVFLDPMCGG-GTIPVECSLSYPHT-FFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ-L-CF 380 (494)
Q Consensus 305 ~la~~~~g~~VLDP~CGS-GtilIEAA~~~~~~-~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~-l-~~ 380 (494)
..+++++|++||-.|||. |.+++.+|+.. ++ .|+++|.+++.++.++.. |.. ..+.....|+.+ + ..
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~~Vi~~~~~~~~~~~a~~l----Ga~----~vi~~~~~~~~~~~~~~ 254 (371)
T 1f8f_A 184 NALKVTPASSFVTWGAGAVGLSALLAAKVC-GASIIIAVDIVESRLELAKQL----GAT----HVINSKTQDPVAAIKEI 254 (371)
T ss_dssp TTTCCCTTCEEEEESCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHHH----TCS----EEEETTTSCHHHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHc----CCC----EEecCCccCHHHHHHHh
Confidence 557788999999998875 66666666543 55 699999999988888642 321 011111112111 1 11
Q ss_pred CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
..+.+|+|+-. .+.. ..+..+.+.|+++ |+++++.
T Consensus 255 ~~gg~D~vid~------~g~~--------~~~~~~~~~l~~~-G~iv~~G 289 (371)
T 1f8f_A 255 TDGGVNFALES------TGSP--------EILKQGVDALGIL-GKIAVVG 289 (371)
T ss_dssp TTSCEEEEEEC------SCCH--------HHHHHHHHTEEEE-EEEEECC
T ss_pred cCCCCcEEEEC------CCCH--------HHHHHHHHHHhcC-CEEEEeC
Confidence 12369998863 2221 2334678899998 9988763
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=92.21 E-value=0.46 Score=49.18 Aligned_cols=45 Identities=7% Similarity=-0.127 Sum_probs=34.5
Q ss_pred CEEEEEcCCcChHHHHHHhcCC-CCe----EEEEeCCHHHHHHHHHHHHh
Q psy19 313 DVFLDPMCGGGTIPVECSLSYP-HTF----FVCGDINEKLVLKTQANVLH 357 (494)
Q Consensus 313 ~~VLDP~CGSGtilIEAA~~~~-~~~----v~G~Did~~al~~Ar~Nl~~ 357 (494)
-+|+|+|||.|++...+-...- .-. +.++|+|+.|+..-+.|...
T Consensus 11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~ 60 (403)
T 4dkj_A 11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK 60 (403)
T ss_dssp EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence 4799999999998765544310 012 77899999999999999863
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=92.07 E-value=0.75 Score=46.50 Aligned_cols=104 Identities=14% Similarity=0.127 Sum_probs=65.0
Q ss_pred HHHHhCCCCCCEEEEEcCCc-ChHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc--
Q psy19 303 MVRLASPIPGDVFLDPMCGG-GTIPVECSLSYPHT-FFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-- 378 (494)
Q Consensus 303 ll~la~~~~g~~VLDP~CGS-GtilIEAA~~~~~~-~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-- 378 (494)
.+..++.++|++||=.|+|. |.+++.+|+.. ++ .|+++|.++...+.++. .|. ...++....|+.+.
T Consensus 174 ~l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~----lGa----~~vi~~~~~~~~~~i~ 244 (370)
T 4ej6_A 174 GVDLSGIKAGSTVAILGGGVIGLLTVQLARLA-GATTVILSTRQATKRRLAEE----VGA----TATVDPSAGDVVEAIA 244 (370)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCHHHHHHHHH----HTC----SEEECTTSSCHHHHHH
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----cCC----CEEECCCCcCHHHHHH
Confidence 35677889999999988764 56666666654 55 89999999998887765 232 11111112222111
Q ss_pred c---CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 379 C---FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 379 ~---~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
. ...+.+|+|+-. .+.. ..+..+.+.|+++ |+++++.
T Consensus 245 ~~~~~~~gg~Dvvid~------~G~~--------~~~~~~~~~l~~~-G~vv~~G 284 (370)
T 4ej6_A 245 GPVGLVPGGVDVVIEC------AGVA--------ETVKQSTRLAKAG-GTVVILG 284 (370)
T ss_dssp STTSSSTTCEEEEEEC------SCCH--------HHHHHHHHHEEEE-EEEEECS
T ss_pred hhhhccCCCCCEEEEC------CCCH--------HHHHHHHHHhccC-CEEEEEe
Confidence 1 112479998863 2221 2334678899998 9988863
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=91.81 E-value=0.2 Score=56.10 Aligned_cols=45 Identities=18% Similarity=0.077 Sum_probs=33.6
Q ss_pred CCCEEEEEcCCcChHHHHHHhcC--C---CCeEEEEeCCHHHHHHHHHHH
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSY--P---HTFFVCGDINEKLVLKTQANV 355 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~--~---~~~v~G~Did~~al~~Ar~Nl 355 (494)
...+|+|+|||.|++..-+.+.. . --.++++|+|+.|++.-+.|.
T Consensus 211 k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh 260 (784)
T 4ft4_B 211 RTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH 260 (784)
T ss_dssp EEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred CCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence 34679999999999865443321 0 025789999999999999984
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=91.37 E-value=0.85 Score=45.54 Aligned_cols=108 Identities=12% Similarity=0.022 Sum_probs=65.1
Q ss_pred HHHHHHHHhCCCCCCEEEEEcCCc-ChHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccc
Q psy19 299 IAYNMVRLASPIPGDVFLDPMCGG-GTIPVECSLSYPHT-FFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVR 376 (494)
Q Consensus 299 lAa~ll~la~~~~g~~VLDP~CGS-GtilIEAA~~~~~~-~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~ 376 (494)
.|...+..+++++|++||=.|+|. |.+++.+|+.. ++ .|+++|.++..++.+++ .|. ...+.....|+.
T Consensus 154 ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~----lGa----~~vi~~~~~~~~ 224 (352)
T 3fpc_A 154 TGFHGAELANIKLGDTVCVIGIGPVGLMSVAGANHL-GAGRIFAVGSRKHCCDIALE----YGA----TDIINYKNGDIV 224 (352)
T ss_dssp HHHHHHHHTTCCTTCCEEEECCSHHHHHHHHHHHTT-TCSSEEEECCCHHHHHHHHH----HTC----CEEECGGGSCHH
T ss_pred HHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----hCC----ceEEcCCCcCHH
Confidence 344456778889999999887754 55566666554 55 79999999998887765 232 111111112221
Q ss_pred cc--c-CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 377 QL--C-FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 377 ~l--~-~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+. . .....+|+|+-. .+.. ..+..+.+.|+++ |+++++.
T Consensus 225 ~~v~~~t~g~g~D~v~d~------~g~~--------~~~~~~~~~l~~~-G~~v~~G 266 (352)
T 3fpc_A 225 EQILKATDGKGVDKVVIA------GGDV--------HTFAQAVKMIKPG-SDIGNVN 266 (352)
T ss_dssp HHHHHHTTTCCEEEEEEC------SSCT--------THHHHHHHHEEEE-EEEEECC
T ss_pred HHHHHHcCCCCCCEEEEC------CCCh--------HHHHHHHHHHhcC-CEEEEec
Confidence 11 1 112369998862 2221 1233577789998 9988763
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=90.92 E-value=0.97 Score=45.08 Aligned_cols=127 Identities=13% Similarity=0.021 Sum_probs=73.2
Q ss_pred CCCEEEEEcCCcChHHHHHHh----cCCCC--eEEEEeCCH--------HHHH-HHHHHHHhcc-CCCCcccceeeeeec
Q psy19 311 PGDVFLDPMCGGGTIPVECSL----SYPHT--FFVCGDINE--------KLVL-KTQANVLHNS-GNLNRELKVSPLVCN 374 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~----~~~~~--~v~G~Did~--------~al~-~Ar~Nl~~~g-~~~~~~~~i~~~~~D 374 (494)
+.-+|+|.|=|+|--.+.+.. ..|.. .++.+|.++ ..+. ....-+.... .. +-.-.+.+..+|
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~-~~~v~L~l~~GD 174 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYE-GERLSLKVLLGD 174 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEE-CSSEEEEEEESC
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCcccc-CCcEEEEEEech
Confidence 345799999999964433322 23443 456666532 1111 1111111110 00 001134577889
Q ss_pred cccc-c-CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHhccc
Q psy19 375 VRQL-C-FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSA 445 (494)
Q Consensus 375 a~~l-~-~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~~~~ 445 (494)
+.+. + +.+..+|+|..|+ |+-.... +++. ..+++.++++++|| |.++-.|..-. +++.+...|+
T Consensus 175 a~~~l~~l~~~~~Da~flDg-FsP~kNP--eLWs--~e~f~~l~~~~~pg-g~laTYtaag~-VRR~L~~aGF 240 (308)
T 3vyw_A 175 ARKRIKEVENFKADAVFHDA-FSPYKNP--ELWT--LDFLSLIKERIDEK-GYWVSYSSSLS-VRKSLLTLGF 240 (308)
T ss_dssp HHHHGGGCCSCCEEEEEECC-SCTTTSG--GGGS--HHHHHHHHTTEEEE-EEEEESCCCHH-HHHHHHHTTC
T ss_pred HHHHHhhhcccceeEEEeCC-CCcccCc--ccCC--HHHHHHHHHHhCCC-cEEEEEeCcHH-HHHHHHHCCC
Confidence 8764 2 3445799999996 5433321 2221 24666899999999 99888777754 8888988883
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=90.11 E-value=1.4 Score=43.87 Aligned_cols=100 Identities=16% Similarity=0.160 Sum_probs=64.0
Q ss_pred HHHHHHHhCCCCCCEEEEEcCCc-ChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc
Q psy19 300 AYNMVRLASPIPGDVFLDPMCGG-GTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378 (494)
Q Consensus 300 Aa~ll~la~~~~g~~VLDP~CGS-GtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l 378 (494)
|+..+..+++++|++||-.|+|. |.+++.+|+.. +++|+++|.+++.++.+++ .|. + .++ .|...+
T Consensus 165 a~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa-----~--~v~-~~~~~~ 231 (348)
T 3two_A 165 TYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALS----MGV-----K--HFY-TDPKQC 231 (348)
T ss_dssp HHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHH----TTC-----S--EEE-SSGGGC
T ss_pred HHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHh----cCC-----C--eec-CCHHHH
Confidence 34455667888999999988764 55566666554 6799999999988887754 332 1 122 232222
Q ss_pred cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 379 CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 379 ~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
. ..+|+|+-. .+.... +..+.+.|+++ |+++++.
T Consensus 232 --~-~~~D~vid~------~g~~~~--------~~~~~~~l~~~-G~iv~~G 265 (348)
T 3two_A 232 --K-EELDFIIST------IPTHYD--------LKDYLKLLTYN-GDLALVG 265 (348)
T ss_dssp --C-SCEEEEEEC------CCSCCC--------HHHHHTTEEEE-EEEEECC
T ss_pred --h-cCCCEEEEC------CCcHHH--------HHHHHHHHhcC-CEEEEEC
Confidence 2 279998863 222211 22477799998 9988863
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.03 E-value=0.7 Score=46.74 Aligned_cols=102 Identities=16% Similarity=0.136 Sum_probs=61.6
Q ss_pred HHHHhCCCCCCEEEEEcCCc-ChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC
Q psy19 303 MVRLASPIPGDVFLDPMCGG-GTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK 381 (494)
Q Consensus 303 ll~la~~~~g~~VLDP~CGS-GtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~ 381 (494)
.+..++.++|++||-.|+|. |.+++.+|... ++.|+++|.+++.++.+++ .|.. ..+.....|... ...
T Consensus 186 al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~----lGa~----~vi~~~~~~~~~-~~~ 255 (369)
T 1uuf_A 186 PLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKA----LGAD----EVVNSRNADEMA-AHL 255 (369)
T ss_dssp HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHH----HTCS----EEEETTCHHHHH-TTT
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCc----EEeccccHHHHH-Hhh
Confidence 34445788999999998864 56666666554 6789999999988887764 2321 111111112111 111
Q ss_pred CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 382 PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 382 ~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
..+|+|+-.- +.... +..+.+.|+++ |+++++.
T Consensus 256 -~g~Dvvid~~------g~~~~--------~~~~~~~l~~~-G~iv~~G 288 (369)
T 1uuf_A 256 -KSFDFILNTV------AAPHN--------LDDFTTLLKRD-GTMTLVG 288 (369)
T ss_dssp -TCEEEEEECC------SSCCC--------HHHHHTTEEEE-EEEEECC
T ss_pred -cCCCEEEECC------CCHHH--------HHHHHHHhccC-CEEEEec
Confidence 4699988632 22111 22467789998 9888764
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=89.19 E-value=2.1 Score=46.98 Aligned_cols=128 Identities=11% Similarity=0.081 Sum_probs=77.1
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCC-------C-----CeEEEEeCC---HHHHHHHHHH-----------HHhccCC-CC
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYP-------H-----TFFVCGDIN---EKLVLKTQAN-----------VLHNSGN-LN 363 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~-------~-----~~v~G~Did---~~al~~Ar~N-----------l~~~g~~-~~ 363 (494)
+.-+|+|.|.|+|.-.+.+...|. . .+++.+|.. ...+..|... +...... .+
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 456899999999988777666551 1 568999994 4444433211 1111000 00
Q ss_pred -----c---ccceeeeeeccccc-c-CC---CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 364 -----R---ELKVSPLVCNVRQL-C-FK---PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 364 -----~---~~~i~~~~~Da~~l-~-~~---~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+ .-.+++..+|+.+. + +. ...+|.+..|+. .-... .+++ -..++..+.++++|| +.+.-.+
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f-~p~~n--p~~w--~~~~~~~l~~~~~~g-~~~~t~~ 211 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGF-APAKN--PDMW--NEQLFNAMARMTRPG-GTFSTFT 211 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSS-CC--C--CTTC--SHHHHHHHHHHEEEE-EEEEESC
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCC-CCCCC--hhhh--hHHHHHHHHHHhCCC-CEEEecc
Confidence 0 11456788898765 2 22 368999999973 21111 1111 124555799999998 8877776
Q ss_pred cCHHHHHHHHHhccc
Q psy19 431 SDRKHLIQALHITSA 445 (494)
Q Consensus 431 ~~~~~l~~~l~~~~~ 445 (494)
.... +++.+...|+
T Consensus 212 ~~~~-vr~~l~~aGf 225 (689)
T 3pvc_A 212 AAGF-VRRGLQQAGF 225 (689)
T ss_dssp CCHH-HHHHHHHTTC
T ss_pred CcHH-HHHHHHhCCe
Confidence 6654 7788887774
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=89.07 E-value=1.4 Score=43.44 Aligned_cols=101 Identities=10% Similarity=0.055 Sum_probs=60.5
Q ss_pred HHhCCCCCCEEEEEcC--CcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee-eccccc--c
Q psy19 305 RLASPIPGDVFLDPMC--GGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV-CNVRQL--C 379 (494)
Q Consensus 305 ~la~~~~g~~VLDP~C--GSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~-~Da~~l--~ 379 (494)
..++.++|.+||-.|| |.|...+.++... +++|+++|.+++.++.+++ .|. ...++... .++.+. .
T Consensus 139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~----~g~----~~~~d~~~~~~~~~~~~~ 209 (333)
T 1v3u_A 139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQ----IGF----DAAFNYKTVNSLEEALKK 209 (333)
T ss_dssp TTSCCCSSCEEEEESTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----TTC----SEEEETTSCSCHHHHHHH
T ss_pred HhhCCCCCCEEEEecCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHh----cCC----cEEEecCCHHHHHHHHHH
Confidence 4467889999999997 4555555555443 6799999999988777632 221 10111111 111110 0
Q ss_pred CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 380 FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 380 ~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
...+.+|++|.+- +. ..+..+.+.|+++ |+++++.
T Consensus 210 ~~~~~~d~vi~~~------g~---------~~~~~~~~~l~~~-G~~v~~g 244 (333)
T 1v3u_A 210 ASPDGYDCYFDNV------GG---------EFLNTVLSQMKDF-GKIAICG 244 (333)
T ss_dssp HCTTCEEEEEESS------CH---------HHHHHHHTTEEEE-EEEEECC
T ss_pred HhCCCCeEEEECC------Ch---------HHHHHHHHHHhcC-CEEEEEe
Confidence 1124799998863 21 1234677899998 9988764
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=89.04 E-value=0.66 Score=54.90 Aligned_cols=44 Identities=14% Similarity=0.042 Sum_probs=35.7
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCC--eEEEEeCCHHHHHHHHHHHH
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHT--FFVCGDINEKLVLKTQANVL 356 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~--~v~G~Did~~al~~Ar~Nl~ 356 (494)
...+++|+|||.|++.+-+... |. .++++|+++.|++.-+.|..
T Consensus 850 ~~l~viDLFsG~GGlslGfe~A--G~~~vv~avEid~~A~~ty~~N~p 895 (1330)
T 3av4_A 850 PKLRTLDVFSGCGGLSEGFHQA--GISETLWAIEMWDPAAQAFRLNNP 895 (1330)
T ss_dssp CCEEEEEETCTTSHHHHHHHHT--TSEEEEEEECCSHHHHHHHHHHCT
T ss_pred CCceEEecccCccHHHHHHHHC--CCCceEEEEECCHHHHHHHHHhCC
Confidence 3457999999999998766554 43 57899999999999998853
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=88.85 E-value=1.6 Score=43.63 Aligned_cols=103 Identities=17% Similarity=0.083 Sum_probs=63.8
Q ss_pred HHHHhCCCCCCEEEEEcCCc-ChHHHHHHhcCCCCe-EEEEeCCHHHHHHHHHHHHhccCCCCcccceeee-----eecc
Q psy19 303 MVRLASPIPGDVFLDPMCGG-GTIPVECSLSYPHTF-FVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL-----VCNV 375 (494)
Q Consensus 303 ll~la~~~~g~~VLDP~CGS-GtilIEAA~~~~~~~-v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~-----~~Da 375 (494)
.+..++.++|++||=.|+|. |.+++.+|+.. ++. |+++|.+++.++.+++. . ..+ +.+. ..|+
T Consensus 171 ~l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l-~-~~~-------~~~~~~~~~~~~~ 240 (363)
T 3m6i_A 171 GLQRAGVRLGDPVLICGAGPIGLITMLCAKAA-GACPLVITDIDEGRLKFAKEI-C-PEV-------VTHKVERLSAEES 240 (363)
T ss_dssp HHHHHTCCTTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEEESCHHHHHHHHHH-C-TTC-------EEEECCSCCHHHH
T ss_pred HHHHcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-c-hhc-------ccccccccchHHH
Confidence 34566888999999888754 66666666654 565 99999999999998875 2 110 1111 0111
Q ss_pred cc-c-c-CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 376 RQ-L-C-FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 376 ~~-l-~-~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
.+ + . .....+|+|+-. .+.. ..+..+.+.|+++ |+++++.
T Consensus 241 ~~~v~~~t~g~g~Dvvid~------~g~~--------~~~~~~~~~l~~~-G~iv~~G 283 (363)
T 3m6i_A 241 AKKIVESFGGIEPAVALEC------TGVE--------SSIAAAIWAVKFG-GKVFVIG 283 (363)
T ss_dssp HHHHHHHTSSCCCSEEEEC------SCCH--------HHHHHHHHHSCTT-CEEEECC
T ss_pred HHHHHHHhCCCCCCEEEEC------CCCh--------HHHHHHHHHhcCC-CEEEEEc
Confidence 11 1 0 112468988862 2321 2334577899999 9988863
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=88.72 E-value=1.1 Score=44.58 Aligned_cols=106 Identities=14% Similarity=0.086 Sum_probs=63.6
Q ss_pred HHHHHHHh-----CCCCCCEEEEEcCCc-ChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 300 AYNMVRLA-----SPIPGDVFLDPMCGG-GTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 300 Aa~ll~la-----~~~~g~~VLDP~CGS-GtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
|...+..+ ++ +|++||-.|+|. |.+++.+|+.. |+++|+++|.+++.++.+++ .|.. ..++...
T Consensus 155 a~~al~~~~~~~~~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----lGa~----~vi~~~~ 225 (344)
T 2h6e_A 155 SMGAIRQALPFISKF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE----LGAD----YVSEMKD 225 (344)
T ss_dssp HHHHHHHHHHHHTTC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----HTCS----EEECHHH
T ss_pred HHHHHHhhhhcccCC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----hCCC----EEecccc
Confidence 34445555 78 999999999863 55566666543 36789999999998887764 2321 1111111
Q ss_pred -ecc-ccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 373 -CNV-RQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 373 -~Da-~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
.|. ..+. ....+|+|+-. .+.. ..+..+.+.|+++ |+++++.
T Consensus 226 ~~~~~~~~~-~g~g~D~vid~------~g~~--------~~~~~~~~~l~~~-G~iv~~g 269 (344)
T 2h6e_A 226 AESLINKLT-DGLGASIAIDL------VGTE--------ETTYNLGKLLAQE-GAIILVG 269 (344)
T ss_dssp HHHHHHHHH-TTCCEEEEEES------SCCH--------HHHHHHHHHEEEE-EEEEECC
T ss_pred chHHHHHhh-cCCCccEEEEC------CCCh--------HHHHHHHHHhhcC-CEEEEeC
Confidence 121 1111 12369999873 2221 1234577889998 9988764
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=88.04 E-value=0.75 Score=45.50 Aligned_cols=102 Identities=10% Similarity=-0.029 Sum_probs=62.2
Q ss_pred HHhCCCCCCEEEEEcC--CcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc--cC
Q psy19 305 RLASPIPGDVFLDPMC--GGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL--CF 380 (494)
Q Consensus 305 ~la~~~~g~~VLDP~C--GSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l--~~ 380 (494)
..++.++|++||-.|| |.|..++.+|... +++|+++|.+++.++.+.+. .|. ...+.....|+.+. ..
T Consensus 143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~---~g~----~~~~~~~~~~~~~~~~~~ 214 (336)
T 4b7c_A 143 DVGQPKNGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFLVEE---LGF----DGAIDYKNEDLAAGLKRE 214 (336)
T ss_dssp HTTCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT---TCC----SEEEETTTSCHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHH---cCC----CEEEECCCHHHHHHHHHh
Confidence 5678899999999888 4566666666543 67999999999877776332 222 11111111121110 01
Q ss_pred CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
..+.+|+|+-+- +. ..+..+.+.|+++ |+++++.
T Consensus 215 ~~~~~d~vi~~~------g~---------~~~~~~~~~l~~~-G~iv~~G 248 (336)
T 4b7c_A 215 CPKGIDVFFDNV------GG---------EILDTVLTRIAFK-ARIVLCG 248 (336)
T ss_dssp CTTCEEEEEESS------CH---------HHHHHHHTTEEEE-EEEEECC
T ss_pred cCCCceEEEECC------Cc---------chHHHHHHHHhhC-CEEEEEe
Confidence 124699988743 21 1234678899998 9988763
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=88.01 E-value=1.7 Score=43.00 Aligned_cols=107 Identities=12% Similarity=0.141 Sum_probs=61.8
Q ss_pred HHHHHHhCCCCCCEEEEEcCCcCh-HHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc-
Q psy19 301 YNMVRLASPIPGDVFLDPMCGGGT-IPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL- 378 (494)
Q Consensus 301 a~ll~la~~~~g~~VLDP~CGSGt-ilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l- 378 (494)
+..+..++.++|++||=.|+|++. +++..|....+.+|+++|.+++-++.++.. |. ...++....|..+.
T Consensus 153 ~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~----Ga----~~~i~~~~~~~~~~v 224 (348)
T 4eez_A 153 YKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKI----GA----DVTINSGDVNPVDEI 224 (348)
T ss_dssp HHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHT----TC----SEEEEC-CCCHHHHH
T ss_pred EeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhc----CC----eEEEeCCCCCHHHHh
Confidence 344566788999999999887643 344444444468999999999877766542 21 11122222222111
Q ss_pred -c-CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 379 -C-FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 379 -~-~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
. .....+|.++.+. +.. ..+....+.|+++ |+++++.
T Consensus 225 ~~~t~g~g~d~~~~~~------~~~--------~~~~~~~~~l~~~-G~~v~~g 263 (348)
T 4eez_A 225 KKITGGLGVQSAIVCA------VAR--------IAFEQAVASLKPM-GKMVAVA 263 (348)
T ss_dssp HHHTTSSCEEEEEECC------SCH--------HHHHHHHHTEEEE-EEEEECC
T ss_pred hhhcCCCCceEEEEec------cCc--------chhheeheeecCC-ceEEEEe
Confidence 1 1123577777643 111 2233567788998 8877653
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=87.08 E-value=1.5 Score=43.83 Aligned_cols=106 Identities=13% Similarity=0.013 Sum_probs=61.2
Q ss_pred HHHHHHhCCCCCCEEEEEcCCc-ChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee-ccccc
Q psy19 301 YNMVRLASPIPGDVFLDPMCGG-GTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC-NVRQL 378 (494)
Q Consensus 301 a~ll~la~~~~g~~VLDP~CGS-GtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~-Da~~l 378 (494)
+..+..+++++|++||-.|+|. |.+++.+|+.. +++|+++|.++..++.++. .|. ...+..... |+.+
T Consensus 169 ~~~l~~~~~~~g~~VlV~GaG~vG~~~~qlak~~-Ga~Vi~~~~~~~~~~~~~~----lGa----~~v~~~~~~~~~~~- 238 (360)
T 1piw_A 169 YSPLVRNGCGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMK----MGA----DHYIATLEEGDWGE- 238 (360)
T ss_dssp HHHHHHTTCSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH----HTC----SEEEEGGGTSCHHH-
T ss_pred HHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHH----cCC----CEEEcCcCchHHHH-
Confidence 3444557888999999999853 55555555543 6789999999888777764 232 111111111 2111
Q ss_pred cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 379 CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 379 ~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
... +.+|+||-.-+... .. .+..+.+.|+++ |+++++.
T Consensus 239 ~~~-~~~D~vid~~g~~~----~~--------~~~~~~~~l~~~-G~iv~~g 276 (360)
T 1piw_A 239 KYF-DTFDLIVVCASSLT----DI--------DFNIMPKAMKVG-GRIVSIS 276 (360)
T ss_dssp HSC-SCEEEEEECCSCST----TC--------CTTTGGGGEEEE-EEEEECC
T ss_pred Hhh-cCCCEEEECCCCCc----HH--------HHHHHHHHhcCC-CEEEEec
Confidence 111 47999987433200 10 111366788888 8887653
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=86.79 E-value=1.5 Score=39.56 Aligned_cols=101 Identities=16% Similarity=0.061 Sum_probs=58.6
Q ss_pred HhCCCCCCEEEEEcC--CcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc-c-c-C
Q psy19 306 LASPIPGDVFLDPMC--GGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ-L-C-F 380 (494)
Q Consensus 306 la~~~~g~~VLDP~C--GSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~-l-~-~ 380 (494)
.+++++|.+||..|+ |.|...+..+... +++|+++|.+++.++.++. .|. ...+.....|..+ + . .
T Consensus 33 ~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~----~g~----~~~~d~~~~~~~~~~~~~~ 103 (198)
T 1pqw_A 33 VGRLSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSR----LGV----EYVGDSRSVDFADEILELT 103 (198)
T ss_dssp TSCCCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHT----TCC----SEEEETTCSTHHHHHHHHT
T ss_pred HhCCCCCCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCC----CEEeeCCcHHHHHHHHHHh
Confidence 457789999999884 3344444444432 6789999999987766543 232 1111111111111 1 0 1
Q ss_pred CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
....+|+||.+- | . ..+..+.+.|+++ |+++++..
T Consensus 104 ~~~~~D~vi~~~--g----~---------~~~~~~~~~l~~~-G~~v~~g~ 138 (198)
T 1pqw_A 104 DGYGVDVVLNSL--A----G---------EAIQRGVQILAPG-GRFIELGK 138 (198)
T ss_dssp TTCCEEEEEECC--C----T---------HHHHHHHHTEEEE-EEEEECSC
T ss_pred CCCCCeEEEECC--c----h---------HHHHHHHHHhccC-CEEEEEcC
Confidence 123699999764 1 1 1234677899998 99887754
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=85.54 E-value=0.96 Score=44.91 Aligned_cols=101 Identities=15% Similarity=0.127 Sum_probs=61.4
Q ss_pred HHhCCCCCCEEEEEcCC--cChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc--c-
Q psy19 305 RLASPIPGDVFLDPMCG--GGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL--C- 379 (494)
Q Consensus 305 ~la~~~~g~~VLDP~CG--SGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l--~- 379 (494)
..++.++|++||-.||| .|.+++.+|... +++|+++|.+++.++.+++ .|.. ..+.....|+.+. .
T Consensus 138 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----lga~----~~~~~~~~~~~~~~~~~ 208 (340)
T 3gms_A 138 ETLNLQRNDVLLVNACGSAIGHLFAQLSQIL-NFRLIAVTRNNKHTEELLR----LGAA----YVIDTSTAPLYETVMEL 208 (340)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH----HTCS----EEEETTTSCHHHHHHHH
T ss_pred HhcccCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----CCCc----EEEeCCcccHHHHHHHH
Confidence 45678899999999887 566666666543 6799999999888887765 2321 1111111121110 0
Q ss_pred CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 380 FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 380 ~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
.....+|+|+-+- +.. .. ....+.|+++ |+++++.
T Consensus 209 ~~~~g~Dvvid~~------g~~----~~-----~~~~~~l~~~-G~iv~~G 243 (340)
T 3gms_A 209 TNGIGADAAIDSI------GGP----DG-----NELAFSLRPN-GHFLTIG 243 (340)
T ss_dssp TTTSCEEEEEESS------CHH----HH-----HHHHHTEEEE-EEEEECC
T ss_pred hCCCCCcEEEECC------CCh----hH-----HHHHHHhcCC-CEEEEEe
Confidence 1123799998742 211 11 1244789998 9988864
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.40 E-value=1.8 Score=43.05 Aligned_cols=106 Identities=15% Similarity=0.117 Sum_probs=62.8
Q ss_pred HHHHHHhCCCCCCEEEEEcC--CcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee-eecccc
Q psy19 301 YNMVRLASPIPGDVFLDPMC--GGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL-VCNVRQ 377 (494)
Q Consensus 301 a~ll~la~~~~g~~VLDP~C--GSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~-~~Da~~ 377 (494)
...+..+++++|++||-.|+ |.|..++.++... +++|+++|.++..++.++. .|. ...+++. ..|+.+
T Consensus 159 ~~~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~~----~g~----~~~~d~~~~~~~~~ 229 (347)
T 2hcy_A 159 YKALKSANLMAGHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKEELFRS----IGG----EVFIDFTKEKDIVG 229 (347)
T ss_dssp HHHHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHHHHHHH----TTC----CEEEETTTCSCHHH
T ss_pred HHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHHHHHHH----cCC----ceEEecCccHhHHH
Confidence 34444557789999999998 4566666666543 6799999998887766653 232 1011111 011111
Q ss_pred c--cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 378 L--CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 378 l--~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
. ....+.+|+||.+-. .. ..+..+.+.|+++ |+++++.
T Consensus 230 ~~~~~~~~~~D~vi~~~g------~~--------~~~~~~~~~l~~~-G~iv~~g 269 (347)
T 2hcy_A 230 AVLKATDGGAHGVINVSV------SE--------AAIEASTRYVRAN-GTTVLVG 269 (347)
T ss_dssp HHHHHHTSCEEEEEECSS------CH--------HHHHHHTTSEEEE-EEEEECC
T ss_pred HHHHHhCCCCCEEEECCC------cH--------HHHHHHHHHHhcC-CEEEEEe
Confidence 0 001126999988642 11 2344688899998 9988764
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=85.29 E-value=2 Score=43.23 Aligned_cols=101 Identities=12% Similarity=0.070 Sum_probs=60.7
Q ss_pred HHhCCC-----CCCEEEEEc-CC-cChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc
Q psy19 305 RLASPI-----PGDVFLDPM-CG-GGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ 377 (494)
Q Consensus 305 ~la~~~-----~g~~VLDP~-CG-SGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~ 377 (494)
..++.+ +|++||=.| +| .|.+++.+|+.+.+++|+++|.+++-++.+++ .|.. ..+... .|+.+
T Consensus 160 ~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad----~vi~~~-~~~~~ 230 (363)
T 4dvj_A 160 DRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAH----HVIDHS-KPLAA 230 (363)
T ss_dssp TTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCS----EEECTT-SCHHH
T ss_pred HhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCC----EEEeCC-CCHHH
Confidence 345555 788888776 43 46677777765447899999999988888764 3321 011111 11111
Q ss_pred -c-cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 378 -L-CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 378 -l-~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+ ....+.+|+|+-. .+. . ..+..+.+.|+++ |+++++
T Consensus 231 ~v~~~~~~g~Dvvid~------~g~----~----~~~~~~~~~l~~~-G~iv~~ 269 (363)
T 4dvj_A 231 EVAALGLGAPAFVFST------THT----D----KHAAEIADLIAPQ-GRFCLI 269 (363)
T ss_dssp HHHTTCSCCEEEEEEC------SCH----H----HHHHHHHHHSCTT-CEEEEC
T ss_pred HHHHhcCCCceEEEEC------CCc----h----hhHHHHHHHhcCC-CEEEEE
Confidence 1 1223479988762 221 1 2334677899999 998876
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=83.68 E-value=3.9 Score=40.91 Aligned_cols=102 Identities=14% Similarity=0.092 Sum_probs=61.9
Q ss_pred HHhCCCCCCEEEEEc--CCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc--cC
Q psy19 305 RLASPIPGDVFLDPM--CGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL--CF 380 (494)
Q Consensus 305 ~la~~~~g~~VLDP~--CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l--~~ 380 (494)
..++.++|++||-.| .|.|..++.+|... +++|++++.+++.++.++. .|.. ..+.....|+.+. ..
T Consensus 157 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~----~Ga~----~~~~~~~~~~~~~~~~~ 227 (362)
T 2c0c_A 157 ELGGLSEGKKVLVTAAAGGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKS----LGCD----RPINYKTEPVGTVLKQE 227 (362)
T ss_dssp HHTCCCTTCEEEETTTTBTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----TTCS----EEEETTTSCHHHHHHHH
T ss_pred HhcCCCCCCEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHH----cCCc----EEEecCChhHHHHHHHh
Confidence 456788999999988 34566666666654 6799999999988777764 3321 0111111121110 01
Q ss_pred CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
....+|+||-+- +. ..+..+.+.|+++ |+++++..
T Consensus 228 ~~~g~D~vid~~------g~---------~~~~~~~~~l~~~-G~iv~~g~ 262 (362)
T 2c0c_A 228 YPEGVDVVYESV------GG---------AMFDLAVDALATK-GRLIVIGF 262 (362)
T ss_dssp CTTCEEEEEECS------CT---------HHHHHHHHHEEEE-EEEEECCC
T ss_pred cCCCCCEEEECC------CH---------HHHHHHHHHHhcC-CEEEEEeC
Confidence 124699998743 21 1233577889998 99888643
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=83.51 E-value=2.5 Score=42.72 Aligned_cols=103 Identities=15% Similarity=0.085 Sum_probs=60.8
Q ss_pred HHHhC-CCCCCEEEEEcCCc-ChHHHHHHhcCCC-CeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee---eecccc
Q psy19 304 VRLAS-PIPGDVFLDPMCGG-GTIPVECSLSYPH-TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL---VCNVRQ 377 (494)
Q Consensus 304 l~la~-~~~g~~VLDP~CGS-GtilIEAA~~~~~-~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~---~~Da~~ 377 (494)
+..++ .++|++||-.|+|. |.+++.+|... + .+|+++|.+++.++.+++ .|. ...+... ..|+.+
T Consensus 187 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~~~~----lGa----~~vi~~~~~~~~~~~~ 257 (380)
T 1vj0_A 187 FDEYPESFAGKTVVIQGAGPLGLFGVVIARSL-GAENVIVIAGSPNRLKLAEE----IGA----DLTLNRRETSVEERRK 257 (380)
T ss_dssp HHTCSSCCBTCEEEEECCSHHHHHHHHHHHHT-TBSEEEEEESCHHHHHHHHH----TTC----SEEEETTTSCHHHHHH
T ss_pred HHhcCCCCCCCEEEEECcCHHHHHHHHHHHHc-CCceEEEEcCCHHHHHHHHH----cCC----cEEEeccccCcchHHH
Confidence 34557 78899999998653 55566666554 5 599999999988887763 332 1111111 112111
Q ss_pred -c-cC-CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 378 -L-CF-KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 378 -l-~~-~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+ .. ....+|+|+-.- +.. ..+..+.+.|+++ |+++++.
T Consensus 258 ~v~~~~~g~g~Dvvid~~------g~~--------~~~~~~~~~l~~~-G~iv~~G 298 (380)
T 1vj0_A 258 AIMDITHGRGADFILEAT------GDS--------RALLEGSELLRRG-GFYSVAG 298 (380)
T ss_dssp HHHHHTTTSCEEEEEECS------SCT--------THHHHHHHHEEEE-EEEEECC
T ss_pred HHHHHhCCCCCcEEEECC------CCH--------HHHHHHHHHHhcC-CEEEEEe
Confidence 1 11 123699998643 211 1223567789998 9988763
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=83.13 E-value=6.3 Score=33.59 Aligned_cols=104 Identities=9% Similarity=0.007 Sum_probs=59.0
Q ss_pred EEEEEcCCcChHHHHHHhc--CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc----CCCCCeeE
Q psy19 314 VFLDPMCGGGTIPVECSLS--YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC----FKPACVDG 387 (494)
Q Consensus 314 ~VLDP~CGSGtilIEAA~~--~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~----~~~~~~D~ 387 (494)
.|+=.|| |.++..+|.. -.+..++++|.|++.++.++. .|. .++.+|+.+.. ..-...|+
T Consensus 9 ~viIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~g~--------~~i~gd~~~~~~l~~a~i~~ad~ 74 (140)
T 3fwz_A 9 HALLVGY--GRVGSLLGEKLLASDIPLVVIETSRTRVDELRE----RGV--------RAVLGNAANEEIMQLAHLECAKW 74 (140)
T ss_dssp CEEEECC--SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----TTC--------EEEESCTTSHHHHHHTTGGGCSE
T ss_pred CEEEECc--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----cCC--------CEEECCCCCHHHHHhcCcccCCE
Confidence 4554555 5555544433 236789999999998877664 232 46777775532 11236788
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHhcc
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITS 444 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~~~ 444 (494)
||.-.| ....+. ++-...+.+.|+ .+++..+.+... .+.+...|
T Consensus 75 vi~~~~------~~~~n~-----~~~~~a~~~~~~-~~iiar~~~~~~-~~~l~~~G 118 (140)
T 3fwz_A 75 LILTIP------NGYEAG-----EIVASARAKNPD-IEIIARAHYDDE-VAYITERG 118 (140)
T ss_dssp EEECCS------CHHHHH-----HHHHHHHHHCSS-SEEEEEESSHHH-HHHHHHTT
T ss_pred EEEECC------ChHHHH-----HHHHHHHHHCCC-CeEEEEECCHHH-HHHHHHCC
Confidence 887332 221111 112345566677 787777777763 34455433
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=82.73 E-value=8.6 Score=38.98 Aligned_cols=104 Identities=12% Similarity=0.003 Sum_probs=58.5
Q ss_pred CCCCCCEEEEEcCCc-ChHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc--c-CCC
Q psy19 308 SPIPGDVFLDPMCGG-GTIPVECSLSYPHT-FFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL--C-FKP 382 (494)
Q Consensus 308 ~~~~g~~VLDP~CGS-GtilIEAA~~~~~~-~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l--~-~~~ 382 (494)
++++|++||=.|+|. |.+++.+|+.. ++ .|+++|.++.-++.+++ .|.. ..++....|+.+. . ...
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~~~~----lGa~----~vi~~~~~~~~~~i~~~t~g 280 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHA-GASKVILSEPSEVRRNLAKE----LGAD----HVIDPTKENFVEAVLDYTNG 280 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCHHHHHHHHH----HTCS----EEECTTTSCHHHHHHHHTTT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----cCCC----EEEcCCCCCHHHHHHHHhCC
Confidence 578899999888753 45555555544 56 89999999998888864 2321 1111111121110 1 112
Q ss_pred CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 383 ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 383 ~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
..+|+|+-. .+.. ...+..++..+.+.++++ |+++++.
T Consensus 281 ~g~D~vid~------~g~~---~~~~~~~~~~l~~~~~~~-G~iv~~G 318 (404)
T 3ip1_A 281 LGAKLFLEA------TGVP---QLVWPQIEEVIWRARGIN-ATVAIVA 318 (404)
T ss_dssp CCCSEEEEC------SSCH---HHHHHHHHHHHHHCSCCC-CEEEECS
T ss_pred CCCCEEEEC------CCCc---HHHHHHHHHHHHhccCCC-cEEEEeC
Confidence 368988862 3322 112333333334555999 9988863
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=82.20 E-value=5.9 Score=38.99 Aligned_cols=106 Identities=12% Similarity=0.127 Sum_probs=60.6
Q ss_pred HHHHHhCCCCCCEEEEEcCCc-ChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc--
Q psy19 302 NMVRLASPIPGDVFLDPMCGG-GTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-- 378 (494)
Q Consensus 302 ~ll~la~~~~g~~VLDP~CGS-GtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-- 378 (494)
.++..+...+|++||=.|+|. |.+++.+|+......++++|.+++-++.|++ .|. ...+.....|..+.
T Consensus 151 ~~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~----lGa----~~~i~~~~~~~~~~~~ 222 (346)
T 4a2c_A 151 HAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS----FGA----MQTFNSSEMSAPQMQS 222 (346)
T ss_dssp HHHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC----SEEEETTTSCHHHHHH
T ss_pred HHHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH----cCC----eEEEeCCCCCHHHHHH
Confidence 345566788999999888764 3445555554433467899999998887764 332 11111111222111
Q ss_pred cC-CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 379 CF-KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 379 ~~-~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
.. ....+|+|+- ..+.. ..+..+.++|+++ |+++++.
T Consensus 223 ~~~~~~g~d~v~d------~~G~~--------~~~~~~~~~l~~~-G~~v~~g 260 (346)
T 4a2c_A 223 VLRELRFNQLILE------TAGVP--------QTVELAVEIAGPH-AQLALVG 260 (346)
T ss_dssp HHGGGCSSEEEEE------CSCSH--------HHHHHHHHHCCTT-CEEEECC
T ss_pred hhcccCCcccccc------ccccc--------chhhhhhheecCC-eEEEEEe
Confidence 01 1135677665 22321 2334577889998 9888753
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=81.51 E-value=2.6 Score=42.86 Aligned_cols=52 Identities=15% Similarity=0.128 Sum_probs=40.4
Q ss_pred HHHHHHHhCCCCCCEEEEEcCCc-ChHHHHHHhcCCCC-eEEEEeCCHHHHHHHH
Q psy19 300 AYNMVRLASPIPGDVFLDPMCGG-GTIPVECSLSYPHT-FFVCGDINEKLVLKTQ 352 (494)
Q Consensus 300 Aa~ll~la~~~~g~~VLDP~CGS-GtilIEAA~~~~~~-~v~G~Did~~al~~Ar 352 (494)
|...+..+++++|++||-.|||. |.+++.+|+.. ++ +|+++|.+++.++.++
T Consensus 174 a~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~ 227 (398)
T 2dph_A 174 GFHGCVSAGVKPGSHVYIAGAGPVGRCAAAGARLL-GAACVIVGDQNPERLKLLS 227 (398)
T ss_dssp HHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHH
T ss_pred HHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHH
Confidence 33445667889999999999876 77777777654 56 8999999999887765
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=81.15 E-value=3.9 Score=40.34 Aligned_cols=106 Identities=16% Similarity=0.165 Sum_probs=65.4
Q ss_pred HHHHHHHhCCCCCCEEEEEcCCc-ChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc
Q psy19 300 AYNMVRLASPIPGDVFLDPMCGG-GTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378 (494)
Q Consensus 300 Aa~ll~la~~~~g~~VLDP~CGS-GtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l 378 (494)
|+..+..++.++|++||-.|||. |.+++.+|+.. +++|+++|.+++.++.+++ .|. ...++....|+.+.
T Consensus 155 a~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa----~~~i~~~~~~~~~~ 225 (340)
T 3s2e_A 155 VYKGLKVTDTRPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARR----LGA----EVAVNARDTDPAAW 225 (340)
T ss_dssp HHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----TTC----SEEEETTTSCHHHH
T ss_pred HHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHH----cCC----CEEEeCCCcCHHHH
Confidence 44455667888999999998865 67777777654 6799999999998887754 332 11111111121110
Q ss_pred -cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 379 -CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 379 -~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
.-..+.+|+|+-+- +.. ..+..+.+.|+++ |+++++
T Consensus 226 ~~~~~g~~d~vid~~------g~~--------~~~~~~~~~l~~~-G~iv~~ 262 (340)
T 3s2e_A 226 LQKEIGGAHGVLVTA------VSP--------KAFSQAIGMVRRG-GTIALN 262 (340)
T ss_dssp HHHHHSSEEEEEESS------CCH--------HHHHHHHHHEEEE-EEEEEC
T ss_pred HHHhCCCCCEEEEeC------CCH--------HHHHHHHHHhccC-CEEEEe
Confidence 00013688887642 211 2334577889998 998876
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=80.99 E-value=4.3 Score=40.25 Aligned_cols=102 Identities=16% Similarity=0.112 Sum_probs=60.0
Q ss_pred HHHhCCCCCCEEEEEcCCc-ChHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc-c-c
Q psy19 304 VRLASPIPGDVFLDPMCGG-GTIPVECSLSYPHT-FFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ-L-C 379 (494)
Q Consensus 304 l~la~~~~g~~VLDP~CGS-GtilIEAA~~~~~~-~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~-l-~ 379 (494)
+..+++ +|++||-.|+|. |.+++.+|... ++ +|+++|.+++.++.++. .|.. ..+.....|+.+ + .
T Consensus 161 l~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~----~Ga~----~~~~~~~~~~~~~v~~ 230 (348)
T 2d8a_A 161 VLAGPI-SGKSVLITGAGPLGLLGIAVAKAS-GAYPVIVSEPSDFRRELAKK----VGAD----YVINPFEEDVVKEVMD 230 (348)
T ss_dssp HTTSCC-TTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHHHHHH----HTCS----EEECTTTSCHHHHHHH
T ss_pred HHhcCC-CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----hCCC----EEECCCCcCHHHHHHH
Confidence 344567 899999999853 55556656544 56 89999999988887763 2221 001111112111 1 0
Q ss_pred C-CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 380 F-KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 380 ~-~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
. ....+|+||-.-+ .. ..+..+.+.|+++ |+++++.
T Consensus 231 ~~~g~g~D~vid~~g------~~--------~~~~~~~~~l~~~-G~iv~~g 267 (348)
T 2d8a_A 231 ITDGNGVDVFLEFSG------AP--------KALEQGLQAVTPA-GRVSLLG 267 (348)
T ss_dssp HTTTSCEEEEEECSC------CH--------HHHHHHHHHEEEE-EEEEECC
T ss_pred HcCCCCCCEEEECCC------CH--------HHHHHHHHHHhcC-CEEEEEc
Confidence 1 1236999987432 11 2234577889998 9988764
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=80.34 E-value=3.1 Score=40.91 Aligned_cols=100 Identities=11% Similarity=0.085 Sum_probs=58.5
Q ss_pred HhCCCCCCEEEEEcC--CcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc-c-c-C
Q psy19 306 LASPIPGDVFLDPMC--GGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ-L-C-F 380 (494)
Q Consensus 306 la~~~~g~~VLDP~C--GSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~-l-~-~ 380 (494)
.+++++|++||-.|+ |.|..++.+|... +++|++++.+++.++.+++ .|. ...++....|+.+ + . .
T Consensus 135 ~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~Ga----~~~~~~~~~~~~~~~~~~~ 205 (325)
T 3jyn_A 135 TYQVKPGEIILFHAAAGGVGSLACQWAKAL-GAKLIGTVSSPEKAAHAKA----LGA----WETIDYSHEDVAKRVLELT 205 (325)
T ss_dssp TSCCCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHH----HTC----SEEEETTTSCHHHHHHHHT
T ss_pred hcCCCCCCEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCC----CEEEeCCCccHHHHHHHHh
Confidence 346788999998762 3455555555443 6799999999998888764 221 1011111112111 0 0 1
Q ss_pred CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
....+|+|+-+- +. . .+..+.+.|+++ |+++++.
T Consensus 206 ~~~g~Dvvid~~------g~-~--------~~~~~~~~l~~~-G~iv~~g 239 (325)
T 3jyn_A 206 DGKKCPVVYDGV------GQ-D--------TWLTSLDSVAPR-GLVVSFG 239 (325)
T ss_dssp TTCCEEEEEESS------CG-G--------GHHHHHTTEEEE-EEEEECC
T ss_pred CCCCceEEEECC------Ch-H--------HHHHHHHHhcCC-CEEEEEe
Confidence 124699988743 22 1 122577899998 9988874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 494 | ||||
| d1vbka2 | 175 | d.308.1.1 (A:1-175) Hypothetical protein PH1313, N | 6e-09 | |
| d2c5sa2 | 171 | d.308.1.1 (A:3-173) Thiamine biosynthesis protein | 9e-09 | |
| d2dira1 | 85 | d.308.1.3 (A:8-92) THUMP domain-containing protein | 5e-08 | |
| d1o9ga_ | 249 | c.66.1.29 (A:) rRNA methyltransferase AviRa {Strep | 3e-07 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 8e-04 |
| >d1vbka2 d.308.1.1 (A:1-175) Hypothetical protein PH1313, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: THUMP domain superfamily: THUMP domain-like family: THUMP domain domain: Hypothetical protein PH1313, N-terminal domain species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 53.3 bits (128), Expect = 6e-09
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 219 KFRVTCNRVGKH-TVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYV 273
KFRVT R+ K + S+E + G + + VDL +YDI+I ++I +AY+
Sbjct: 108 KFRVTARRITKEFPLDSLEIQAKVGEYILNNENCEVDLKNYDIEIGIEIMQGKAYI 163
|
| >d2c5sa2 d.308.1.1 (A:3-173) Thiamine biosynthesis protein ThiI, N-terminal domain {Bacillus anthracis [TaxId: 1392]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: THUMP domain superfamily: THUMP domain-like family: THUMP domain domain: Thiamine biosynthesis protein ThiI, N-terminal domain species: Bacillus anthracis [TaxId: 1392]
Score = 52.5 bits (126), Expect = 9e-09
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 219 KFRVTCNRVGKH-TVTSMESERAFGGKLNDTYFWL-VDLDDYDIDINLQIRYNEAYV--- 273
F++T +R KH + +ME GG + + + VD+ + D+++ ++IR +Y+
Sbjct: 103 TFKITVHRSYKHFPMRTMELLPEIGGHILENTEDITVDVHNPDVNVRVEIRSGYSYIMCD 162
Query: 274 ------GLP 276
GLP
Sbjct: 163 ERMGAGGLP 171
|
| >d2dira1 d.308.1.3 (A:8-92) THUMP domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: THUMP domain superfamily: THUMP domain-like family: Minimal THUMP domain: THUMP domain-containing protein 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.2 bits (115), Expect = 5e-08
Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 1/63 (1%)
Query: 213 PEENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWL-VDLDDYDIDINLQIRYNEA 271
N F++ V E R G + VDL + + ++I
Sbjct: 20 KAPNKGTFQIVYKSRNNSHVNREEVIRELAGIVCTLNSENKVDLTNPQYTVVVEIIKAVC 79
Query: 272 YVG 274
+
Sbjct: 80 CLS 82
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} Length = 249 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Score = 49.3 bits (117), Expect = 3e-07
Identities = 33/234 (14%), Positives = 58/234 (24%), Gaps = 56/234 (23%)
Query: 281 SLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC---------SL 331
LH L I + DP CG G + +
Sbjct: 20 VLHSAPGYPAFPVRLATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQV 79
Query: 332 SYPHTFFVCGDINEKLVLKTQANVL---------------------------HNSGNLNR 364
++ K + L L
Sbjct: 80 IASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAARRLRERLTA 139
Query: 365 ---ELKVSPLVCNVRQL-----CFKPACVDGIVTDLPFGKRVGSKSNNFL-LYRLFLIEI 415
L + +V + D ++TDLP+G+R + L +
Sbjct: 140 EGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSL 199
Query: 416 GKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNR 469
+ P A++ +DR I + K +++KI G +S V +
Sbjct: 200 ASAL-P--AHAVIAVTDRSRKIPVAPV-----KALERLKI---GTRSAVMVRAA 242
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 38.3 bits (88), Expect = 8e-04
Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 6/100 (6%)
Query: 296 KPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANV 355
+ ++ LA P DV +D CG G + +E + D N + + T+ N+
Sbjct: 18 AMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLEL--AGRVRRVYAIDRNPEAISTTEMNL 75
Query: 356 LHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFG 395
+ V+ + + + K +D V G
Sbjct: 76 QRH----GLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGG 111
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 494 | |||
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 99.9 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.74 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.7 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.69 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.69 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.68 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 99.66 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.64 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.6 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.6 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.58 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.57 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.56 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.56 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 99.56 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.55 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.55 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 99.54 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.54 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.53 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.53 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.52 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.52 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.52 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.51 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.5 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 99.5 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.48 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.46 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.45 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.42 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.41 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.39 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.38 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.37 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.36 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.36 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.36 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.35 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.35 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.33 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.33 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.33 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.33 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.31 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.3 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.29 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.29 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.29 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.28 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.27 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.27 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.27 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.26 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.26 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.25 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.19 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.19 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.18 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.18 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.18 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.16 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.16 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.15 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.11 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.09 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.08 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.03 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.99 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.89 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 98.82 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 98.82 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.82 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.76 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.73 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.7 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 98.64 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.62 | |
| d2dira1 | 85 | THUMP domain-containing protein 1 {Human (Homo sap | 98.59 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.58 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.53 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 98.53 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.52 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.49 | |
| d1vbka2 | 175 | Hypothetical protein PH1313, N-terminal domain {Ar | 98.49 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.47 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.47 | |
| d2c5sa2 | 171 | Thiamine biosynthesis protein ThiI, N-terminal dom | 98.42 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 98.37 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 98.37 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.35 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.29 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.28 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.28 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.25 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.25 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.18 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 98.15 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.15 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.14 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.08 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.05 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 97.76 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 97.7 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 97.59 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 97.39 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 97.34 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 97.1 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.04 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.75 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 96.71 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 96.68 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 95.99 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 95.9 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.56 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.01 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 94.78 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 94.37 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.14 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 93.87 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 93.66 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 93.58 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 93.5 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.17 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 93.04 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 89.99 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 89.13 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 89.04 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 89.0 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 86.91 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 85.88 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 85.46 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 84.89 | |
| d2oo3a1 | 271 | Uncharacterized protein LPG1296 {Legionella pneumo | 84.31 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 84.07 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 82.04 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 81.88 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 80.74 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 80.51 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 80.25 |
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=99.90 E-value=1.3e-24 Score=210.63 Aligned_cols=158 Identities=15% Similarity=0.081 Sum_probs=126.8
Q ss_pred ceecccccccccccccccccccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcC----------------C
Q psy19 271 AYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY----------------P 334 (494)
Q Consensus 271 ~~l~l~lsg~sL~~Rgy~~~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~----------------~ 334 (494)
+.++...+|.+||+|+|+...+++|.+.+++..+.+++|+++..++|||||||||+||||++. +
T Consensus 10 ~~~~d~ssg~~L~~~~~~~~~~~~Laa~il~~al~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~ 89 (249)
T d1o9ga_ 10 MDSSDLACGVVLHSAPGYPAFPVRLATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPL 89 (249)
T ss_dssp CCCGGGCTTTSSCCBTTBCCCCHHHHHHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHH
T ss_pred ccHHhhcCCCccccCCCCCCcchHHHHHHHHHHhhhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhccc
Confidence 344445578899999997555777888888888889999988999999999999999999971 1
Q ss_pred C------------------------CeEEEEeCCHHHHHHH---HHHHHhccCCCCcccceeeeeeccccccC-----CC
Q psy19 335 H------------------------TFFVCGDINEKLVLKT---QANVLHNSGNLNRELKVSPLVCNVRQLCF-----KP 382 (494)
Q Consensus 335 ~------------------------~~v~G~Did~~al~~A---r~Nl~~~g~~~~~~~~i~~~~~Da~~l~~-----~~ 382 (494)
+ ..++|.|+|+.+++.| +.|+..+|+ ...+.+.+.|+++... ..
T Consensus 90 ~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~A~~~r~n~~~Agl----~~~i~i~~~d~f~~~~~~~~~~~ 165 (249)
T d1o9ga_ 90 ELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAARRLRERLTAEGG----ALPCAIRTADVFDPRALSAVLAG 165 (249)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTS----SCCEEEEECCTTCGGGHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHHHHHHHHHHHHcCC----CceeeeeecchhccCcchhccCC
Confidence 0 3578999999999999 568988875 5667899999876531 23
Q ss_pred CCeeEEEEcCCCccccCCccc-hHHHHHHHHHHHhhcccCCCcEEEEEecCHH
Q psy19 383 ACVDGIVTDLPFGKRVGSKSN-NFLLYRLFLIEIGKIVRPQIGRAILLTSDRK 434 (494)
Q Consensus 383 ~~~D~IVtNPPYG~r~~~~~~-~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~ 434 (494)
...++||||||||+|++.... ..++|..|...+.++| |+ +.++++|.+.+
T Consensus 166 ~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~-p~-~s~~~it~~~~ 216 (249)
T d1o9ga_ 166 SAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASAL-PA-HAVIAVTDRSR 216 (249)
T ss_dssp CCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHS-CT-TCEEEEEESSS
T ss_pred CCCCEEEeCCCccccccccccchHHHHHHHHHHHHccC-CC-CcEEEEeCchh
Confidence 567999999999999985433 5678889999999988 56 88899988754
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=2.8e-17 Score=161.19 Aligned_cols=160 Identities=12% Similarity=0.020 Sum_probs=124.5
Q ss_pred ccccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccce
Q psy19 289 EFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKV 368 (494)
Q Consensus 289 ~~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i 368 (494)
.+-|.|-.|.+....+.... ..+.+|||+|||||.+++.+|...|.+.++|+|+++.|++.|++|++.+++ .++
T Consensus 87 VlIPRpeTE~lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~-----~~v 160 (274)
T d2b3ta1 87 TLIPRPDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-----KNI 160 (274)
T ss_dssp SCCCCTTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC-----CSE
T ss_pred ccccccchhhhhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc-----ccc
Confidence 34588889989887776544 355789999999999999999999999999999999999999999998875 247
Q ss_pred eeeeeccccccCCCCCeeEEEEcCCCcccc-----------C------CccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 369 SPLVCNVRQLCFKPACVDGIVTDLPFGKRV-----------G------SKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 369 ~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~-----------~------~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
.++++|+++. +++.+||+||+||||-... . ...+...+|++++..+.++|+|+ |.+++..+
T Consensus 161 ~~~~~d~~~~-~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~-G~l~lEig 238 (274)
T d2b3ta1 161 HILQSDWFSA-LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSG-GFLLLEHG 238 (274)
T ss_dssp EEECCSTTGG-GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEE-EEEEEECC
T ss_pred eeeecccccc-cCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCC-CEEEEEEC
Confidence 8999998873 4556899999999995321 0 11234578999999999999999 99998655
Q ss_pred C--HHHHHHHHHhccccceeeeeEEEccC
Q psy19 432 D--RKHLIQALHITSALWKCRKQIKINMS 458 (494)
Q Consensus 432 ~--~~~l~~~l~~~~~l~~~~~~~~v~~G 458 (494)
. ...+.+.+...| |...+.+.-.+|
T Consensus 239 ~~q~~~v~~~l~~~g--f~~i~~~kDl~g 265 (274)
T d2b3ta1 239 WQQGEAVRQAFILAG--YHDVETCRDYGD 265 (274)
T ss_dssp SSCHHHHHHHHHHTT--CTTCCEEECTTS
T ss_pred chHHHHHHHHHHHCC--CCeEEEEECCCC
Confidence 3 344666676666 455555555544
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.70 E-value=9e-17 Score=161.20 Aligned_cols=153 Identities=16% Similarity=0.102 Sum_probs=115.0
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc----cCCCCC
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL----CFKPAC 384 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l----~~~~~~ 384 (494)
.++|.+|||+|||+|++++.+|.... ..|+++|+++.+++.|++|++.+|+ ..+++++++|+++. +....+
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~ngl----~~~~~~~~~d~~~~~~~~~~~~~~ 217 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNGV----EDRMKFIVGSAFEEMEKLQKKGEK 217 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTC----GGGEEEEESCHHHHHHHHHHTTCC
T ss_pred cCCCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHcCC----CccceeeechhhhhhHHHHhccCC
Confidence 46789999999999999999998742 4899999999999999999999876 45678999998764 223468
Q ss_pred eeEEEEcCCCccccC-CccchHHHHHHHHHHHhhcccCCCcEEEEEecCH----HHHHHHHHhccccceeeeeEEEccCC
Q psy19 385 VDGIVTDLPFGKRVG-SKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR----KHLIQALHITSALWKCRKQIKINMSG 459 (494)
Q Consensus 385 ~D~IVtNPPYG~r~~-~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~----~~l~~~l~~~~~l~~~~~~~~v~~Gg 459 (494)
||+||+|||+..... ........|.+++..+.++|+|| |.+++.++.. +.|.+.+.+... .
T Consensus 218 fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pG-G~lv~~s~s~~~~~~~f~~~v~~a~~--~----------- 283 (324)
T d2as0a2 218 FDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDG-GILVTCSCSQHVDLQMFKDMIIAAGA--K----------- 283 (324)
T ss_dssp EEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEE-EEEEEEECCTTSCHHHHHHHHHHHHH--H-----------
T ss_pred CCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCC-cEEEEEeCCccCCHHHHHHHHHHHHH--H-----------
Confidence 999999999754322 12234567899999999999999 9999887743 335444443221 1
Q ss_pred ceEEEEEEee-CCCCCCCcccC
Q psy19 460 MKSFVFILNR-TADLFDYAIHG 480 (494)
Q Consensus 460 l~~~i~v~~~-~~~~~d~~~~~ 480 (494)
..+.+.++++ ..+++|||+..
T Consensus 284 ~gr~~~~~~~~~~~~~DhP~~~ 305 (324)
T d2as0a2 284 AGKFLKMLEPYRTQAPDHPILM 305 (324)
T ss_dssp TTEEEEESSCBBCSCTTSCCBT
T ss_pred cCCeEEEeeecCCCCCCCCCCC
Confidence 1234555565 58999999843
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.69 E-value=2.2e-16 Score=145.64 Aligned_cols=124 Identities=20% Similarity=0.151 Sum_probs=106.9
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
|.|.++.+-+.++.+..+.+|++|||+|||+|.+++++|.. ..+|+|+|+++.+++.|++|++.+|+ .++++++
T Consensus 14 ~~~t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~--~~~V~avD~~~~~l~~a~~n~~~~gl----~~~v~~~ 87 (186)
T d1l3ia_ 14 PGPTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQRHGL----GDNVTLM 87 (186)
T ss_dssp CCCCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTC----CTTEEEE
T ss_pred CCCChHHHHHHHHHhcCCCCCCEEEEEECCeEccccccccc--ceEEEEecCCHHHHHHHHHHHHHcCC----CcceEEE
Confidence 67899999999999999999999999999999999999876 56899999999999999999998875 4578999
Q ss_pred eeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 372 VCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 372 ~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
++|+.+.......||.|+++.+++. +..+++.+.+.|||| |++++.....
T Consensus 88 ~gda~~~~~~~~~~D~v~~~~~~~~-----------~~~~~~~~~~~Lkpg-G~lvi~~~~~ 137 (186)
T d1l3ia_ 88 EGDAPEALCKIPDIDIAVVGGSGGE-----------LQEILRIIKDKLKPG-GRIIVTAILL 137 (186)
T ss_dssp ESCHHHHHTTSCCEEEEEESCCTTC-----------HHHHHHHHHHTEEEE-EEEEEEECBH
T ss_pred ECchhhcccccCCcCEEEEeCcccc-----------chHHHHHHHHHhCcC-CEEEEEeecc
Confidence 9999988666679999999987531 235667899999999 9998876544
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.69 E-value=4.4e-17 Score=163.10 Aligned_cols=149 Identities=15% Similarity=0.132 Sum_probs=113.2
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc----cCCCCCee
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL----CFKPACVD 386 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l----~~~~~~~D 386 (494)
.|.+|||+|||+|++++.+|.. +..|+++|+++.+++.|++|++.+|+ ..+.++++|++++ +....+||
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl-----~~~~~i~~d~~~~~~~~~~~~~~fD 217 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGL-----GNVRVLEANAFDLLRRLEKEGERFD 217 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTC-----TTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCC-----CCcceeeccHHHHhhhhHhhhcCCC
Confidence 6889999999999999998865 57899999999999999999999886 2468899998774 23346899
Q ss_pred EEEEcCCCccc-cCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH----HHHHHHHHhccccceeeeeEEEccCCce
Q psy19 387 GIVTDLPFGKR-VGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR----KHLIQALHITSALWKCRKQIKINMSGMK 461 (494)
Q Consensus 387 ~IVtNPPYG~r-~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~----~~l~~~l~~~~~l~~~~~~~~v~~Ggl~ 461 (494)
+||+|||+... ..........|..++..+.++|+|| |.+++.+++. ..|...+.+... ...
T Consensus 218 ~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpG-G~Lv~~scs~~~~~~~f~~~v~~a~~-------------~a~ 283 (318)
T d1wxxa2 218 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEG-GILATASCSHHMTEPLFYAMVAEAAQ-------------DAH 283 (318)
T ss_dssp EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEE-EEEEEEECCTTSCHHHHHHHHHHHHH-------------HTT
T ss_pred EEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCC-CEEEEEeCCcccCHHHHHHHHHHHHH-------------HcC
Confidence 99999996432 2222345667889999999999999 9999888753 334444443211 011
Q ss_pred EEEEEEeeCCCCCCCcccC
Q psy19 462 SFVFILNRTADLFDYAIHG 480 (494)
Q Consensus 462 ~~i~v~~~~~~~~d~~~~~ 480 (494)
+.+.++.+..+++|||+..
T Consensus 284 ~~~~~~~~~~~~~DhP~~~ 302 (318)
T d1wxxa2 284 RLLRVVEKRGQPFDHPVLL 302 (318)
T ss_dssp CCEEEEEEECCCTTSCCBT
T ss_pred CCEEEEEecCCCCCCCCCC
Confidence 2455667888999999854
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.68 E-value=4.7e-16 Score=144.14 Aligned_cols=120 Identities=16% Similarity=0.182 Sum_probs=98.2
Q ss_pred HHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc
Q psy19 300 AYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC 379 (494)
Q Consensus 300 Aa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~ 379 (494)
+..|+......++.+|||+|||+|.+++.+|.. ...++|+|+|+.+++.|++|++.+++. ...+.+.++|+.+ +
T Consensus 41 t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~v~~iD~s~~~i~~a~~n~~~~~l~---~~~i~~~~~d~~~-~ 114 (194)
T d1dusa_ 41 TKILVENVVVDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLD---NYDIRVVHSDLYE-N 114 (194)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCT---TSCEEEEECSTTT-T
T ss_pred HHHHHHhCCcCCCCeEEEEeecCChhHHHHHhh--ccccceeeeccccchhHHHHHHHhCCc---cceEEEEEcchhh-h
Confidence 455677777888999999999999999999887 458999999999999999999988763 2357899999987 4
Q ss_pred CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 380 FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 380 ~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
+++++||+|++||||... .+....+++.+.++|+|| |+++++....
T Consensus 115 ~~~~~fD~Ii~~~p~~~~-------~~~~~~~l~~~~~~Lkpg-G~l~i~~~~~ 160 (194)
T d1dusa_ 115 VKDRKYNKIITNPPIRAG-------KEVLHRIIEEGKELLKDN-GEIWVVIQTK 160 (194)
T ss_dssp CTTSCEEEEEECCCSTTC-------HHHHHHHHHHHHHHEEEE-EEEEEEEEST
T ss_pred hccCCceEEEEcccEEec-------chhhhhHHHHHHHhcCcC-cEEEEEEeCc
Confidence 556799999999998421 233557788999999999 9998876543
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=99.66 E-value=2.4e-16 Score=157.57 Aligned_cols=173 Identities=16% Similarity=0.192 Sum_probs=122.8
Q ss_pred ccccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhc-----CCCCeEEEEeCCHHHHHHHHHHHHhccCCCC
Q psy19 289 EFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS-----YPHTFFVCGDINEKLVLKTQANVLHNSGNLN 363 (494)
Q Consensus 289 ~~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~-----~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~ 363 (494)
+++|.++..-++..+..++..+++.+||||+||||+|+++++.. .....++|+|+|+.++..|+.|+...+.
T Consensus 95 ~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~--- 171 (328)
T d2f8la1 95 QMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--- 171 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC---
T ss_pred EECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh---
Confidence 45677777777777777778888899999999999999998653 2345799999999999999999987754
Q ss_pred cccceeeeeeccccccCCCCCeeEEEEcCCCccccCCc----------cchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 364 RELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSK----------SNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 364 ~~~~i~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~----------~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
...+.++|...... ...||+||+||||+...... .....+|..|+..+.+.|+|| |++++++|+.
T Consensus 172 ---~~~~~~~d~~~~~~-~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~-G~~~~I~p~~ 246 (328)
T d2f8la1 172 ---KMTLLHQDGLANLL-VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPG-GYLFFLVPDA 246 (328)
T ss_dssp ---CCEEEESCTTSCCC-CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEE-EEEEEEEEGG
T ss_pred ---hhhhhccccccccc-cccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCC-CceEEEecCc
Confidence 23567777665433 36899999999997542110 111234667899999999999 9999988843
Q ss_pred -------HHHHHHHHhccccceeeeeEE-----EccCCceEEEEEEeeCCC
Q psy19 434 -------KHLIQALHITSALWKCRKQIK-----INMSGMKSFVFILNRTAD 472 (494)
Q Consensus 434 -------~~l~~~l~~~~~l~~~~~~~~-----v~~Ggl~~~i~v~~~~~~ 472 (494)
..+++.+.+.. .....+. +.+-+..+.|+++++...
T Consensus 247 ~l~~~~~~~lR~~L~~~~---~i~~ii~lp~~~F~~~~~~t~ilvl~K~~~ 294 (328)
T d2f8la1 247 MFGTSDFAKVDKFIKKNG---HIEGIIKLPETLFKSEQARKSILILEKADV 294 (328)
T ss_dssp GGGSTTHHHHHHHHHHHE---EEEEEEECCGGGSCC-CCCEEEEEEEECCT
T ss_pred cccCchhHHHHHHHHhCC---cEEEEEECCccccCCCCCCeEEEEEECCCC
Confidence 23455444433 2222222 245577788888887543
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.64 E-value=6.7e-16 Score=154.34 Aligned_cols=129 Identities=14% Similarity=0.086 Sum_probs=99.1
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc----cCCCC
Q psy19 308 SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL----CFKPA 383 (494)
Q Consensus 308 ~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l----~~~~~ 383 (494)
...+|.+|||+|||+|++++.||... ...|+++|+++.+++.|++|++.+++. ..++.++++|+++. .....
T Consensus 141 ~~~~g~~VLdlf~~~G~~sl~aa~~g-a~~V~~vD~s~~a~~~a~~N~~~n~l~---~~~~~~i~~d~~~~l~~~~~~~~ 216 (317)
T d2b78a2 141 GSAAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLD---MANHQLVVMDVFDYFKYARRHHL 216 (317)
T ss_dssp TTTBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCC---CTTEEEEESCHHHHHHHHHHTTC
T ss_pred HhhCCCceeecCCCCcHHHHHHHhCC-CceEEEecCCHHHHHHHHHHHHHhccc---CcceEEEEccHHHHHHHHHhhcC
Confidence 44578899999999999999988762 247999999999999999999999863 24578999999765 12345
Q ss_pred CeeEEEEcCC-CccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC----HHHHHHHHH
Q psy19 384 CVDGIVTDLP-FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD----RKHLIQALH 441 (494)
Q Consensus 384 ~~D~IVtNPP-YG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~----~~~l~~~l~ 441 (494)
.||+||+||| |+..-.........|.+++..+.++|+|| |.+++.++. ...|...+.
T Consensus 217 ~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pg-G~l~~~scs~~~~~~~f~~~v~ 278 (317)
T d2b78a2 217 TYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSEN-GLIIASTNAANMTVSQFKKQIE 278 (317)
T ss_dssp CEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEE-EEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCC-CEEEEEeCCccCCHHHHHHHHH
Confidence 8999999999 55443334456777999999999999999 999998874 344444443
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.60 E-value=1.3e-15 Score=138.97 Aligned_cols=109 Identities=18% Similarity=0.155 Sum_probs=81.7
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc--cCCCCCee
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL--CFKPACVD 386 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l--~~~~~~~D 386 (494)
...|.+|||+|||||.++++|+.. ++.++++|+|+.+++.|++|++.+++ ..++....+|.... .....+||
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~----~~~v~~~~~d~~~~~~~~~~~~fD 112 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGL----GARVVALPVEVFLPEAKAQGERFT 112 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTC----CCEEECSCHHHHHHHHHHTTCCEE
T ss_pred ccCCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhcc----ccceeeeehhcccccccccCCccc
Confidence 357889999999999999999988 67899999999999999999998876 33455555664322 23346899
Q ss_pred EEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 387 GIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 387 ~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+|++||||+... ..++..++. ..+|+|| |.+++-.+.
T Consensus 113 ~If~DPPY~~~~------~~~l~~l~~--~~ll~~~-g~ivie~~~ 149 (171)
T d1ws6a1 113 VAFMAPPYAMDL------AALFGELLA--SGLVEAG-GLYVLQHPK 149 (171)
T ss_dssp EEEECCCTTSCT------THHHHHHHH--HTCEEEE-EEEEEEEET
T ss_pred eeEEccccccCH------HHHHHHHHH--cCCcCCC-eEEEEEecC
Confidence 999999998532 223444433 3589998 887765543
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.60 E-value=2e-15 Score=135.06 Aligned_cols=108 Identities=18% Similarity=0.169 Sum_probs=86.2
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc-cCCCCCeeEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-CFKPACVDGI 388 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-~~~~~~~D~I 388 (494)
-.|.+|||+|||||++++||+.+.. ..|+++|+|+.+++.+++|++.+++ .++++++++|+... +...++||+|
T Consensus 13 ~~g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~~~----~~~~~ii~~D~~~~l~~~~~~fDiI 87 (152)
T d2esra1 13 FNGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMTKA----ENRFTLLKMEAERAIDCLTGRFDLV 87 (152)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTTTC----GGGEEEECSCHHHHHHHBCSCEEEE
T ss_pred CCCCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhccc----ccchhhhccccccccccccccccee
Confidence 3688999999999999999999854 4899999999999999999997764 56789999999875 3445789999
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHH--hhcccCCCcEEEEEecC
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEI--GKIVRPQIGRAILLTSD 432 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l--~rvLkpg~G~lvllt~~ 432 (494)
++||||... .+...+..+ .++|+|+ |.+++-++.
T Consensus 88 f~DPPy~~~---------~~~~~l~~i~~~~~L~~~-g~iiiE~~~ 123 (152)
T d2esra1 88 FLDPPYAKE---------TIVATIEALAAKNLLSEQ-VMVVCETDK 123 (152)
T ss_dssp EECCSSHHH---------HHHHHHHHHHHTTCEEEE-EEEEEEEET
T ss_pred Eechhhccc---------hHHHHHHHHHHCCCcCCC-eEEEEEeCC
Confidence 999999632 233344433 3579998 887775544
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.58 E-value=4.9e-15 Score=138.65 Aligned_cols=95 Identities=22% Similarity=0.296 Sum_probs=76.3
Q ss_pred cchHHHHHHHHHHhC---CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 294 TLKPTIAYNMVRLAS---PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 294 ~L~e~lAa~ll~la~---~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
++++.+|+.|+..+. --.|.+|||+|||||.++++|+...+ ..|+|+|+|+.+++.|++|++.++. ...+
T Consensus 26 ~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~~N~~~~~~------~~~~ 98 (201)
T d1wy7a1 26 RTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKG------KFKV 98 (201)
T ss_dssp CCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTT------SEEE
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcCC-CEEEEEcCcHHHHHHHHHHHHHcCC------CceE
Confidence 445677777665543 23678999999999999999988732 5899999999999999999987654 3578
Q ss_pred eeeccccccCCCCCeeEEEEcCCCcccc
Q psy19 371 LVCNVRQLCFKPACVDGIVTDLPFGKRV 398 (494)
Q Consensus 371 ~~~Da~~l~~~~~~~D~IVtNPPYG~r~ 398 (494)
..+|+..++ ..||+||+||||+...
T Consensus 99 ~~~d~~~~~---~~fD~Vi~nPP~~~~~ 123 (201)
T d1wy7a1 99 FIGDVSEFN---SRVDIVIMNPPFGSQR 123 (201)
T ss_dssp EESCGGGCC---CCCSEEEECCCCSSSS
T ss_pred EECchhhhC---CcCcEEEEcCcccccc
Confidence 889988753 6799999999998543
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=4.2e-15 Score=136.97 Aligned_cols=116 Identities=12% Similarity=0.106 Sum_probs=86.4
Q ss_pred HHHHHHhCC-CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc-
Q psy19 301 YNMVRLASP-IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL- 378 (494)
Q Consensus 301 a~ll~la~~-~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l- 378 (494)
.++.++... -.+.+|||+|||||.+++||+.++. ..|+++|+|+.+++.+++|++..+. ..+.++++|+...
T Consensus 32 e~lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa-~~v~~VE~~~~a~~~~k~N~~~~~~-----~~~~ii~~d~~~~l 105 (183)
T d2fpoa1 32 ETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKA-----GNARVVNSNAMSFL 105 (183)
T ss_dssp HHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTC-----CSEEEECSCHHHHH
T ss_pred HHHHhhhhcccchhhhhhhhccccceeeeEEecCc-ceeEEEEEeechhhHHHHHHhhccc-----cceeeeeecccccc
Confidence 555544432 3678999999999999999999853 4799999999999999999997653 3467889998875
Q ss_pred cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHh--hcccCCCcEEEEEecC
Q psy19 379 CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIG--KIVRPQIGRAILLTSD 432 (494)
Q Consensus 379 ~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~--rvLkpg~G~lvllt~~ 432 (494)
......||+|++||||+... +..++..+. .+|+++ |.+++-++.
T Consensus 106 ~~~~~~fDlIf~DPPY~~~~---------~~~~l~~l~~~~~L~~~-~iIiiE~~~ 151 (183)
T d2fpoa1 106 AQKGTPHNIVFVDPPFRRGL---------LEETINLLEDNGWLADE-ALIYVESEV 151 (183)
T ss_dssp SSCCCCEEEEEECCSSSTTT---------HHHHHHHHHHTTCEEEE-EEEEEEEEG
T ss_pred cccccccCEEEEcCccccch---------HHHHHHHHHHCCCCCCC-eEEEEEecC
Confidence 33456899999999998532 223333333 478988 877775543
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.56 E-value=1.7e-14 Score=136.66 Aligned_cols=115 Identities=17% Similarity=0.117 Sum_probs=96.3
Q ss_pred HHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc
Q psy19 299 IAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378 (494)
Q Consensus 299 lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l 378 (494)
....|+..+.+++|.+|||+|||+|.++..++.. +..++|+|+++.|++.|++++...+. .++.++++|+.++
T Consensus 4 ~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~--~~~v~gvD~S~~~l~~A~~~~~~~~~-----~~~~~~~~d~~~~ 76 (234)
T d1xxla_ 4 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKGV-----ENVRFQQGTAESL 76 (234)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHHTC-----CSEEEEECBTTBC
T ss_pred HHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHh--CCeEEEEeCChhhhhhhhhhhccccc-----ccccccccccccc
Confidence 4556889999999999999999999999999887 56899999999999999999998764 3478999999999
Q ss_pred cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 379 CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 379 ~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
|+++++||+|++.--+. ...+ ...+++++.++|||| |++++.
T Consensus 77 ~~~~~~fD~v~~~~~l~----~~~d----~~~~l~~~~r~Lkpg-G~~~~~ 118 (234)
T d1xxla_ 77 PFPDDSFDIITCRYAAH----HFSD----VRKAVREVARVLKQD-GRFLLV 118 (234)
T ss_dssp CSCTTCEEEEEEESCGG----GCSC----HHHHHHHHHHHEEEE-EEEEEE
T ss_pred cccccccceeeeeceee----cccC----HHHHHHHHHHeeCCC-cEEEEE
Confidence 99889999999953221 1122 346677899999999 988875
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.56 E-value=3.8e-15 Score=139.03 Aligned_cols=93 Identities=16% Similarity=0.170 Sum_probs=70.3
Q ss_pred cccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCccccee
Q psy19 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVS 369 (494)
Q Consensus 290 ~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~ 369 (494)
.+|+++...++..+..+.+. .|.+|||+|||||.++++++...+ ..|+|+|+|+.+++.|++|+.. ++
T Consensus 28 ~T~~~~a~~~~~~~~~~~dl-~Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N~~~----------~~ 95 (197)
T d1ne2a_ 28 PTDASTAAYFLIEIYNDGNI-GGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNCGG----------VN 95 (197)
T ss_dssp CCCHHHHHHHHHHHHHHTSS-BTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHHCTT----------SE
T ss_pred CCCHHHHHHHHHHHHHcCCC-CCCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHcccc----------cc
Confidence 34555544444433344344 588999999999999999888743 4799999999999999999752 36
Q ss_pred eeeeccccccCCCCCeeEEEEcCCCccc
Q psy19 370 PLVCNVRQLCFKPACVDGIVTDLPFGKR 397 (494)
Q Consensus 370 ~~~~Da~~l~~~~~~~D~IVtNPPYG~r 397 (494)
++++|+.+++ +.||+||+|||||..
T Consensus 96 ~~~~D~~~l~---~~fD~Vi~NPPfg~~ 120 (197)
T d1ne2a_ 96 FMVADVSEIS---GKYDTWIMNPPFGSV 120 (197)
T ss_dssp EEECCGGGCC---CCEEEEEECCCC---
T ss_pred EEEEehhhcC---CcceEEEeCcccchh
Confidence 8999998864 689999999999864
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=99.56 E-value=5.3e-15 Score=153.18 Aligned_cols=169 Identities=17% Similarity=0.184 Sum_probs=120.6
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-------------CCeEEEEeCCHHHHHHHHHHHHhccCC
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-------------HTFFVCGDINEKLVLKTQANVLHNSGN 361 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-------------~~~v~G~Did~~al~~Ar~Nl~~~g~~ 361 (494)
++..++..|+.++.+.++.+|+||+||||+|+++++..+. ...++|+|+++.+...|+.|+...|..
T Consensus 146 TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~ 225 (425)
T d2okca1 146 TPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG 225 (425)
T ss_dssp CCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred cchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc
Confidence 3456788899999998999999999999999999876532 135999999999999999999988753
Q ss_pred CCcccceeeeeeccccccCCCCCeeEEEEcCCCccccCCcc---------chHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 362 LNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKS---------NNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 362 ~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~---------~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
. ....+...|....+. ...||+||+|||||....... .....+-.|+..+.+.|++| |++++++|+
T Consensus 226 ~---~~~~i~~~d~l~~~~-~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~-G~~~iI~p~ 300 (425)
T d2okca1 226 T---DRSPIVCEDSLEKEP-STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTG-GRAAVVLPD 300 (425)
T ss_dssp S---SCCSEEECCTTTSCC-SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEE-EEEEEEEEH
T ss_pred c---ccceeecCchhhhhc-ccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCC-CeEEEEech
Confidence 2 234677888876533 468999999999986542211 01223556899999999999 999999885
Q ss_pred HHH--------HHHHHHhccccceeeeeEE-----EccCCceEEEEEEeeCC
Q psy19 433 RKH--------LIQALHITSALWKCRKQIK-----INMSGMKSFVFILNRTA 471 (494)
Q Consensus 433 ~~~--------l~~~l~~~~~l~~~~~~~~-----v~~Ggl~~~i~v~~~~~ 471 (494)
..+ +++.+-+.. .....+. +.+-+..+.|+++++..
T Consensus 301 ~~L~~~~~~~~iR~~Ll~~~---~i~aIi~LP~~~F~~t~v~t~Ilil~K~k 349 (425)
T d2okca1 301 NVLFEAGAGETIRKRLLQDF---NLHTILRLPTGIFYAQGVKANVLFFSKGQ 349 (425)
T ss_dssp HHHHCSTHHHHHHHHHHHHE---EEEEEEECCSSSSSSTTCCEEEEEEEESS
T ss_pred HHhhhhhhHHHHHHHHHHhc---chhHhhcCCcccccCCCCCeEEEEEECCC
Confidence 432 223332222 1112221 23567788899998754
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.55 E-value=1.8e-14 Score=135.36 Aligned_cols=114 Identities=17% Similarity=0.213 Sum_probs=94.2
Q ss_pred HHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC
Q psy19 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380 (494)
Q Consensus 301 a~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~ 380 (494)
+.|+.+++.+++.+|||+|||+|.+++.++.. +.+++|+|+++.+++.|+.++...+. .++.+.++|+.++|+
T Consensus 5 ~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~i~~A~~~~~~~~~-----~~i~~~~~d~~~l~~ 77 (231)
T d1vl5a_ 5 AKLMQIAALKGNEEVLDVATGGGHVANAFAPF--VKKVVAFDLTEDILKVARAFIEGNGH-----QQVEYVQGDAEQMPF 77 (231)
T ss_dssp HHHHHHHTCCSCCEEEEETCTTCHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEECCC-CCCS
T ss_pred HHHHHhcCCCCcCEEEEecccCcHHHHHHHHh--CCEEEEEECCHHHHhhhhhccccccc-----ccccccccccccccc
Confidence 35778899999999999999999999998877 57899999999999999999987764 457899999999998
Q ss_pred CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
++++||+|++.-=+. .+ .+ ...+++++.++|+|| |++++..
T Consensus 78 ~~~~fD~v~~~~~l~-~~---~d----~~~~l~~~~r~Lkpg-G~l~i~~ 118 (231)
T d1vl5a_ 78 TDERFHIVTCRIAAH-HF---PN----PASFVSEAYRVLKKG-GQLLLVD 118 (231)
T ss_dssp CTTCEEEEEEESCGG-GC---SC----HHHHHHHHHHHEEEE-EEEEEEE
T ss_pred ccccccccccccccc-cc---CC----HHHHHHHHHHhcCCC-cEEEEEe
Confidence 889999999953211 11 22 346777999999999 9999864
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.55 E-value=4e-14 Score=137.64 Aligned_cols=134 Identities=15% Similarity=0.157 Sum_probs=112.2
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
...+-|.-++.|+.+++++||.+|||.|||||.+++.+|.. .|..+++++|+++++++.|++|++..+. ....++.+
T Consensus 77 tqiiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~--~~~~nv~~ 154 (264)
T d1i9ga_ 77 PQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG--QPPDNWRL 154 (264)
T ss_dssp SCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT--SCCTTEEE
T ss_pred ccccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhcc--CCCceEEE
Confidence 45677888899999999999999999999999999998876 6788999999999999999999997642 22456789
Q ss_pred eeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHH
Q psy19 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALH 441 (494)
Q Consensus 371 ~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~ 441 (494)
.++|+.+.++++++||.|++|.|--. .+++++.++|||| |++++.+|..+.+.+.+.
T Consensus 155 ~~~d~~~~~~~~~~fDaV~ldlp~P~-------------~~l~~~~~~LkpG-G~lv~~~P~i~Qv~~~~~ 211 (264)
T d1i9ga_ 155 VVSDLADSELPDGSVDRAVLDMLAPW-------------EVLDAVSRLLVAG-GVLMVYVATVTQLSRIVE 211 (264)
T ss_dssp ECSCGGGCCCCTTCEEEEEEESSCGG-------------GGHHHHHHHEEEE-EEEEEEESSHHHHHHHHH
T ss_pred EecccccccccCCCcceEEEecCCHH-------------HHHHHHHhccCCC-CEEEEEeCccChHHHHHH
Confidence 99999988888889999999987321 3345789999999 999999998755555443
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=99.54 E-value=7e-15 Score=137.41 Aligned_cols=161 Identities=17% Similarity=0.195 Sum_probs=109.6
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
.++.++..|+.++...++.+|||||||+|+|++.++.. .....++|+|+++.++..+ ....++++
T Consensus 3 TP~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~--------------~~~~~~~~ 68 (223)
T d2ih2a1 3 TPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------------PWAEGILA 68 (223)
T ss_dssp CCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--------------TTEEEEES
T ss_pred CCHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc--------------ccceeeee
Confidence 35678999999999999999999999999999887654 3346799999998764332 22356778
Q ss_pred ccccccCCCCCeeEEEEcCCCccccCCc---------------------cchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 374 NVRQLCFKPACVDGIVTDLPFGKRVGSK---------------------SNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 374 Da~~l~~~~~~~D~IVtNPPYG~r~~~~---------------------~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
|...... ...||+|++||||+...... .....+|..|+..+.+.|++| |++++++|+
T Consensus 69 ~~~~~~~-~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~-G~~~~I~p~ 146 (223)
T d2ih2a1 69 DFLLWEP-GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPG-GVLVFVVPA 146 (223)
T ss_dssp CGGGCCC-SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEE-EEEEEEEEG
T ss_pred ehhcccc-ccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccC-CceEEEEee
Confidence 8776643 36899999999997532111 012236788999999999999 999999874
Q ss_pred H-------HHHHHHHHhccccceeeeeEE-EccCCceEEEEEEeeCCC
Q psy19 433 R-------KHLIQALHITSALWKCRKQIK-INMSGMKSFVFILNRTAD 472 (494)
Q Consensus 433 ~-------~~l~~~l~~~~~l~~~~~~~~-v~~Ggl~~~i~v~~~~~~ 472 (494)
. ..+++.+.+... ........ +.+-+..+.|+++++...
T Consensus 147 ~~l~~~~~~~lR~~l~~~~~-i~i~~~~~~F~~~~v~t~i~~~~k~~~ 193 (223)
T d2ih2a1 147 TWLVLEDFALLREFLAREGK-TSVYYLGEVFPQKKVSAVVIRFQKSGK 193 (223)
T ss_dssp GGGTCGGGHHHHHHHHHHSE-EEEEEEESCSTTCCCCEEEEEEESSSC
T ss_pred eeccCcchHHHHHHHHhcCC-EEEEcchhcCCCCCCcEEEEEEEeCCC
Confidence 3 223444443221 11110001 123466778888876544
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=7.2e-14 Score=134.87 Aligned_cols=164 Identities=10% Similarity=0.008 Sum_probs=110.9
Q ss_pred chHHHHHHHHHHhCC-----CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCccccee
Q psy19 295 LKPTIAYNMVRLASP-----IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVS 369 (494)
Q Consensus 295 L~e~lAa~ll~la~~-----~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~ 369 (494)
.+..+...+..+... .+..++||+|||||.|++.+|...|+..++|+|+++.|++.|++|++.+++ ..++.
T Consensus 40 ~r~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l----~~~~~ 115 (250)
T d2h00a1 40 LRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL----SDLIK 115 (250)
T ss_dssp HHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC----TTTEE
T ss_pred CHHHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCC----Cccee
Confidence 344444445444422 234589999999999999999888889999999999999999999999875 45566
Q ss_pred eeeeccccc------cCCCCCeeEEEEcCCCccccCC---------------------ccc------hHHHHHHHHHHHh
Q psy19 370 PLVCNVRQL------CFKPACVDGIVTDLPFGKRVGS---------------------KSN------NFLLYRLFLIEIG 416 (494)
Q Consensus 370 ~~~~Da~~l------~~~~~~~D~IVtNPPYG~r~~~---------------------~~~------~~~ly~~fL~~l~ 416 (494)
+.+.+.... ....+.||+|||||||-..... ... -..+|.+++++..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~ 195 (250)
T d2h00a1 116 VVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSL 195 (250)
T ss_dssp EEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHH
T ss_pred eeeeccHHhhhhhhhhcccCceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHH
Confidence 766554332 1123579999999999632100 000 0246888999999
Q ss_pred hcccCCCcEEEEEecCH---HHHHHHHHhccccceeeeeEEEccCCceEEEE
Q psy19 417 KIVRPQIGRAILLTSDR---KHLIQALHITSALWKCRKQIKINMSGMKSFVF 465 (494)
Q Consensus 417 rvLkpg~G~lvllt~~~---~~l~~~l~~~~~l~~~~~~~~v~~Ggl~~~i~ 465 (494)
.++++. |.+....+.. ..+.+.+...+ +...+.+.+..|.-..++.
T Consensus 196 ~~~~~~-g~~t~~ig~~~~l~~i~~~L~~~g--~~~i~~ie~~qG~~~r~ii 244 (250)
T d2h00a1 196 QLKKRL-RWYSCMLGKKCSLAPLKEELRIQG--VPKVTYTEFCQGRTMRWAL 244 (250)
T ss_dssp HHGGGB-SCEEEEESSTTSHHHHHHHHHHTT--CSEEEEEEEEETTEEEEEE
T ss_pred HHhhcC-cEEEEEecchhhHHHHHHHHHHcC--CCeEEEEEecCCCEeEEEE
Confidence 999987 6665544432 33566666655 3445666677776555543
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.53 E-value=4.3e-14 Score=137.94 Aligned_cols=134 Identities=15% Similarity=0.152 Sum_probs=103.4
Q ss_pred cccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCccccee
Q psy19 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVS 369 (494)
Q Consensus 290 ~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~ 369 (494)
+-|.|-.|.|...++......+...|+|.|||||.+++.++. .|.+.|+|+|+++.|++.|++|++.+++ ..++.
T Consensus 89 lIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~----~~~~~ 163 (271)
T d1nv8a_ 89 FVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGV----SDRFF 163 (271)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTC----TTSEE
T ss_pred cCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCC----CceeE
Confidence 457788899988888765544556899999999999999875 5789999999999999999999998875 44567
Q ss_pred eeeecccccc-CCCCCeeEEEEcCCCccccCC---------------ccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 370 PLVCNVRQLC-FKPACVDGIVTDLPFGKRVGS---------------KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 370 ~~~~Da~~l~-~~~~~~D~IVtNPPYG~r~~~---------------~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+..+|+.... ...+.||+||+||||-..... ..+...+|++++ .++|+|| |.+++-.+.
T Consensus 164 i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~---~~~L~~~-G~l~~Eig~ 238 (271)
T d1nv8a_ 164 VRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFF---GRYDTSG-KIVLMEIGE 238 (271)
T ss_dssp EEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHH---HHCCCTT-CEEEEECCT
T ss_pred EeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHH---HHhcCCC-CEEEEEECH
Confidence 7888887652 223689999999999543210 123346788775 4689999 998886653
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=4.3e-14 Score=134.83 Aligned_cols=124 Identities=10% Similarity=-0.004 Sum_probs=101.0
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
.|..+...+.|+..+++.+|.+|||+|||+|.++..++... ++.++|+|+++.+++.|++++..+|+ .+++++.+
T Consensus 15 ~p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~-~~~v~GvD~s~~~~~~ar~~~~~~gl----~~~v~~~~ 89 (245)
T d1nkva_ 15 NPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGV----SERVHFIH 89 (245)
T ss_dssp SSCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEE
T ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhc-CCEEEEEecccchhhHHHHHHHHhhc----cccchhhh
Confidence 35677778889999999999999999999999999888765 47999999999999999999998875 45689999
Q ss_pred eccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 373 CNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 373 ~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+|+.++. .+++||+|++.--+. ...+ +..+++++.++|||| |++++..+
T Consensus 90 ~d~~~~~-~~~~fD~v~~~~~~~----~~~d----~~~~l~~~~r~LkPG-G~l~i~~~ 138 (245)
T d1nkva_ 90 NDAAGYV-ANEKCDVAACVGATW----IAGG----FAGAEELLAQSLKPG-GIMLIGEP 138 (245)
T ss_dssp SCCTTCC-CSSCEEEEEEESCGG----GTSS----SHHHHHHHTTSEEEE-EEEEEEEE
T ss_pred hHHhhcc-ccCceeEEEEEehhh----ccCC----HHHHHHHHHHHcCcC-cEEEEEec
Confidence 9999974 468999999853221 1112 346777899999999 99888543
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.52 E-value=2.3e-13 Score=134.89 Aligned_cols=154 Identities=13% Similarity=0.049 Sum_probs=105.9
Q ss_pred EecCcceecccccccccccccccccccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCH
Q psy19 266 IRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINE 345 (494)
Q Consensus 266 l~~~~~~l~l~lsg~sL~~Rgy~~~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~ 345 (494)
+..+.+.+.++++. .++-|+. ......+.-++.. +.....+.+|||+|||||++++.||.. ++.|+++|+++
T Consensus 93 v~e~gl~f~v~~~~--~~~tG~f-~dqr~nr~~~~~~---~~~~~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~ 164 (309)
T d2igta1 93 LSLLGVEFLGRFTA--FRHVGVF-PEQIVHWEWLKNA---VETADRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASK 164 (309)
T ss_dssp EEETTEEEEEECCS--SSCCSCC-GGGHHHHHHHHHH---HHHSSSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCH
T ss_pred EEEeEEEEEEeccC--CCccccc-cchhHHHHHHHHH---HhhccCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChH
Confidence 34456666666642 2344431 1111223323322 233446789999999999999999887 67999999999
Q ss_pred HHHHHHHHHHHhccCCCCcccceeeeeecccccc----CCCCCeeEEEEcCCC-cccc-CCccchHHHHHHHHHHHhhcc
Q psy19 346 KLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC----FKPACVDGIVTDLPF-GKRV-GSKSNNFLLYRLFLIEIGKIV 419 (494)
Q Consensus 346 ~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~----~~~~~~D~IVtNPPY-G~r~-~~~~~~~~ly~~fL~~l~rvL 419 (494)
.+++.|++|++.+|+. ..++.++++|+++.- .....||+||+|||+ +... +....+...+..++..+.++|
T Consensus 165 ~al~~a~~N~~ln~~~---~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll 241 (309)
T d2igta1 165 KAIGWAKENQVLAGLE---QAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREIL 241 (309)
T ss_dssp HHHHHHHHHHHHHTCT---TSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHhhhhhccc---CCcEEEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhc
Confidence 9999999999999863 235789999998751 223689999999994 4322 222345566667777889999
Q ss_pred cCCCcEEEEEec
Q psy19 420 RPQIGRAILLTS 431 (494)
Q Consensus 420 kpg~G~lvllt~ 431 (494)
+|+ |.++++++
T Consensus 242 ~~~-g~~ll~t~ 252 (309)
T d2igta1 242 SPK-ALGLVLTA 252 (309)
T ss_dssp CTT-CCEEEEEE
T ss_pred CCC-CCEEEEec
Confidence 998 76666554
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.52 E-value=4.1e-14 Score=137.89 Aligned_cols=121 Identities=11% Similarity=0.015 Sum_probs=98.6
Q ss_pred hHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecc
Q psy19 296 KPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNV 375 (494)
Q Consensus 296 ~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da 375 (494)
.+.++..|...+.+.++.+|||+|||+|.+++.+|... ++.|+|+|+++.+++.|++++...|+ .+++++.++|+
T Consensus 52 ~~~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl----~~~v~~~~~d~ 126 (282)
T d2o57a1 52 DEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGL----ADNITVKYGSF 126 (282)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTC----TTTEEEEECCT
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccc----ccccccccccc
Confidence 34566666667788899999999999999999988754 57899999999999999999998875 45789999999
Q ss_pred ccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 376 RQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 376 ~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
.++|+++++||+|++.--+. .+ .+ ...+++++.++|||| |++++..
T Consensus 127 ~~l~~~~~sfD~V~~~~~l~-h~---~d----~~~~l~~~~~~Lkpg-G~l~~~~ 172 (282)
T d2o57a1 127 LEIPCEDNSYDFIWSQDAFL-HS---PD----KLKVFQECARVLKPR-GVMAITD 172 (282)
T ss_dssp TSCSSCTTCEEEEEEESCGG-GC---SC----HHHHHHHHHHHEEEE-EEEEEEE
T ss_pred ccccccccccchhhccchhh-hc---cC----HHHHHHHHHHhcCCC-cEEEEEE
Confidence 99998889999999964321 11 22 245777999999999 9988754
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.52 E-value=4.1e-14 Score=130.25 Aligned_cols=124 Identities=13% Similarity=0.113 Sum_probs=92.8
Q ss_pred cchHHHHHHHHHHhC-CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 294 TLKPTIAYNMVRLAS-PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 294 ~L~e~lAa~ll~la~-~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
|+...+-.++.++.. .-.|.+|||+|||||.+++||+.++. ..|+++|+|+.+++.+++|++..+. ..++.+++
T Consensus 23 Pt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa-~~v~~ve~~~~a~~~~~~N~~~~~~----~~~~~i~~ 97 (182)
T d2fhpa1 23 PTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAITKE----PEKFEVRK 97 (182)
T ss_dssp CCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHTC----GGGEEEEE
T ss_pred cCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecch-hHHHHHHHHHHHHHHHHHHhhhhhc----cccccccc
Confidence 444455556666554 34789999999999999999999843 4799999999999999999998764 45688999
Q ss_pred eccccc-c---CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHh--hcccCCCcEEEEEecC
Q psy19 373 CNVRQL-C---FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIG--KIVRPQIGRAILLTSD 432 (494)
Q Consensus 373 ~Da~~l-~---~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~--rvLkpg~G~lvllt~~ 432 (494)
+|+.+. . .....||+|++||||+... |...+..+. .+|+++ |.+++-++.
T Consensus 98 ~D~~~~l~~~~~~~~~fDlIflDPPY~~~~---------~~~~l~~i~~~~~L~~~-giIi~E~~~ 153 (182)
T d2fhpa1 98 MDANRALEQFYEEKLQFDLVLLDPPYAKQE---------IVSQLEKMLERQLLTNE-AVIVCETDK 153 (182)
T ss_dssp SCHHHHHHHHHHTTCCEEEEEECCCGGGCC---------HHHHHHHHHHTTCEEEE-EEEEEEEET
T ss_pred ccchhhhhhhcccCCCcceEEechhhhhhH---------HHHHHHHHHHCCCCCCC-EEEEEEcCC
Confidence 998764 1 1335799999999997532 333444443 479998 877665543
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.51 E-value=4.9e-14 Score=136.43 Aligned_cols=120 Identities=20% Similarity=0.184 Sum_probs=93.6
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEE
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGI 388 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~I 388 (494)
.++|.+|||+|||||.+++.+++. +.+|+|+|+|+.|++.|++|++.++++ +.+.++|+... ++.++||+|
T Consensus 118 ~~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~~------~~~~~~d~~~~-~~~~~fD~V 188 (254)
T d2nxca1 118 LRPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVR------PRFLEGSLEAA-LPFGPFDLL 188 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCC------CEEEESCHHHH-GGGCCEEEE
T ss_pred cCccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCCc------eeEEecccccc-ccccccchh
Confidence 468899999999999999998887 678999999999999999999998762 35788887764 344789999
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE---EecCHHHHHHHHHhccccceeee
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL---LTSDRKHLIQALHITSALWKCRK 451 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl---lt~~~~~l~~~l~~~~~l~~~~~ 451 (494)
++|..+ .....+++++.++|||| |++++ +..+...+.+.+...| ++...
T Consensus 189 ~ani~~-----------~~l~~l~~~~~~~LkpG-G~lilSgil~~~~~~v~~~~~~~G--f~~~~ 240 (254)
T d2nxca1 189 VANLYA-----------ELHAALAPRYREALVPG-GRALLTGILKDRAPLVREAMAGAG--FRPLE 240 (254)
T ss_dssp EEECCH-----------HHHHHHHHHHHHHEEEE-EEEEEEEEEGGGHHHHHHHHHHTT--CEEEE
T ss_pred hhcccc-----------ccHHHHHHHHHHhcCCC-cEEEEEecchhhHHHHHHHHHHCC--CEEEE
Confidence 998532 22445677899999999 99886 3344555777777766 44444
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.50 E-value=2.5e-13 Score=131.73 Aligned_cols=101 Identities=13% Similarity=0.087 Sum_probs=85.0
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEE
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGI 388 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~I 388 (494)
.++|++|||+|||+|++++.+|... .+.|+|+|+||.+++.+++|++.+++ .+++.++++|+++++. .+.||.|
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~~n~l----~~~v~~~~~D~~~~~~-~~~~D~I 178 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKV----EDRMSAYNMDNRDFPG-ENIADRI 178 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTC----TTTEEEECSCTTTCCC-CSCEEEE
T ss_pred cCCccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHHHhCC----CceEEEEEcchHHhcc-CCCCCEE
Confidence 3689999999999999999999874 46999999999999999999999876 5678999999998854 3689999
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
|+|||+... .|+..+.++|++| |.+.+
T Consensus 179 i~~~p~~~~------------~~l~~a~~~l~~g-G~lh~ 205 (260)
T d2frna1 179 LMGYVVRTH------------EFIPKALSIAKDG-AIIHY 205 (260)
T ss_dssp EECCCSSGG------------GGHHHHHHHEEEE-EEEEE
T ss_pred EECCCCchH------------HHHHHHHhhcCCC-CEEEE
Confidence 999996421 3455688899998 87754
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=2e-14 Score=152.66 Aligned_cols=172 Identities=17% Similarity=0.194 Sum_probs=114.8
Q ss_pred hHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC------------------CCeEEEEeCCHHHHHHHHHHHHh
Q psy19 296 KPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP------------------HTFFVCGDINEKLVLKTQANVLH 357 (494)
Q Consensus 296 ~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~------------------~~~v~G~Did~~al~~Ar~Nl~~ 357 (494)
+..++..|+.++.+.++.+|+||+||||+|+++|..... ...++|+|+++.++..|+.|+..
T Consensus 149 P~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l 228 (524)
T d2ar0a1 149 PRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL 228 (524)
T ss_dssp CHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT
T ss_pred ccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHh
Confidence 445678888899999999999999999999999876421 12589999999999999999998
Q ss_pred ccCCCCcccceeeeeecccccc-CCCCCeeEEEEcCCCccccCCcc------chHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 358 NSGNLNRELKVSPLVCNVRQLC-FKPACVDGIVTDLPFGKRVGSKS------NNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 358 ~g~~~~~~~~i~~~~~Da~~l~-~~~~~~D~IVtNPPYG~r~~~~~------~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
.+....+.....+...|....+ .....||+||+|||||....... .....+-.|+..+.+.|++| |++++|+
T Consensus 229 ~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~g-Gr~aiIl 307 (524)
T d2ar0a1 229 HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG-GRAAVVV 307 (524)
T ss_dssp TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred hcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhcccc-CcEEEEE
Confidence 7753322112223334433321 12357999999999986543211 01112335889999999999 9999999
Q ss_pred cCHHH--------HHHHHHhccccceeeeeEE-----EccCCceEEEEEEeeCC
Q psy19 431 SDRKH--------LIQALHITSALWKCRKQIK-----INMSGMKSFVFILNRTA 471 (494)
Q Consensus 431 ~~~~~--------l~~~l~~~~~l~~~~~~~~-----v~~Ggl~~~i~v~~~~~ 471 (494)
|+..+ +++.+-+.. .....+. +.+-|..+.|+++++..
T Consensus 308 P~~~Lf~~~~~~~iR~~Ll~~~---~i~aII~LP~~~F~~t~i~t~Il~l~K~k 358 (524)
T d2ar0a1 308 PDNVLFEGGKGTDIRRDLMDKC---HLHTILRLPTGIFYAQGVKTNVLFFTKGT 358 (524)
T ss_dssp EHHHHHCCTHHHHHHHHHHHHE---EEEEEEECCSSCSSSCSCCEEEEEEEEBC
T ss_pred ehHHhhhhhhhHHHHHHHHHcC---CceEEEECCCCcCCCCCCCeEEEEEECCC
Confidence 85432 233332222 1112221 23557888999998743
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.48 E-value=2.4e-13 Score=131.11 Aligned_cols=132 Identities=12% Similarity=0.111 Sum_probs=96.6
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
.+.+-|.=++.|+.+++.+||.+|||.|||||.+++.+|.. .+...|+++|+++.+++.|++|++.++. ..++++
T Consensus 66 ~qiiypkD~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~----~~nv~~ 141 (250)
T d1yb2a1 66 TQIISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD----IGNVRT 141 (250)
T ss_dssp ---------------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC----CTTEEE
T ss_pred CcccCHHHHHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcC----CCceEE
Confidence 45566677778899999999999999999999999888865 5678999999999999999999997643 356789
Q ss_pred eeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHh
Q psy19 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHI 442 (494)
Q Consensus 371 ~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~ 442 (494)
.++|+.+. +++..||.|++|.|-.. .+++++.++|||| |++++.+|..+.+.+....
T Consensus 142 ~~~Di~~~-~~~~~fD~V~ld~p~p~-------------~~l~~~~~~LKpG-G~lv~~~P~i~Qv~~~~~~ 198 (250)
T d1yb2a1 142 SRSDIADF-ISDQMYDAVIADIPDPW-------------NHVQKIASMMKPG-SVATFYLPNFDQSEKTVLS 198 (250)
T ss_dssp ECSCTTTC-CCSCCEEEEEECCSCGG-------------GSHHHHHHTEEEE-EEEEEEESSHHHHHHHHHH
T ss_pred EEeeeecc-cccceeeeeeecCCchH-------------HHHHHHHHhcCCC-ceEEEEeCCcChHHHHHHH
Confidence 99999876 44578999999987221 3456789999999 9999999986555555443
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.46 E-value=2.9e-13 Score=131.72 Aligned_cols=131 Identities=14% Similarity=0.135 Sum_probs=107.5
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
+..+-|.-++.|+.++++++|.+|||+|||||.+++.+|.. .++++++|+|+++++++.|++|++.+++ ...+.+
T Consensus 84 ~qiiypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~----~~~v~~ 159 (266)
T d1o54a_ 84 TQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL----IERVTI 159 (266)
T ss_dssp CCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC----GGGEEE
T ss_pred ccccchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhcc----ccCcEE
Confidence 56677888999999999999999999999999999999876 4678999999999999999999998765 456677
Q ss_pred eeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHH
Q psy19 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALH 441 (494)
Q Consensus 371 ~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~ 441 (494)
...|+... +....+|.|+.|.|=- ..+++++.++|||| |++++++|..+.+.+.+.
T Consensus 160 ~~~d~~~~-~~~~~~D~V~~d~p~p-------------~~~l~~~~~~LKpG-G~lv~~~P~~~Qv~~~~~ 215 (266)
T d1o54a_ 160 KVRDISEG-FDEKDVDALFLDVPDP-------------WNYIDKCWEALKGG-GRFATVCPTTNQVQETLK 215 (266)
T ss_dssp ECCCGGGC-CSCCSEEEEEECCSCG-------------GGTHHHHHHHEEEE-EEEEEEESSHHHHHHHHH
T ss_pred Eecccccc-ccccceeeeEecCCCH-------------HHHHHHHHhhcCCC-CEEEEEeCcccHHHHHHH
Confidence 88886543 4456899999988711 14566899999999 999999998655554443
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.45 E-value=2.6e-13 Score=126.03 Aligned_cols=110 Identities=19% Similarity=0.206 Sum_probs=88.1
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEE
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGI 388 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~I 388 (494)
.+++.+|||+|||+|.+++.++.. +..|+|+|+++.|++.|++++...+. .+.++.+|+.++++++++||+|
T Consensus 35 l~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~------~~~~~~~d~~~l~~~~~~fD~I 106 (226)
T d1ve3a1 35 MKKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRES------NVEFIVGDARKLSFEDKTFDYV 106 (226)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC------CCEEEECCTTSCCSCTTCEEEE
T ss_pred cCCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccc------cccccccccccccccCcCceEE
Confidence 357789999999999999999986 67999999999999999999986543 3467889999999888999999
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
++.= ....-. ..+ ...+|+++.++|||| |++++..++.
T Consensus 107 ~~~~--~l~~~~---~~d-~~~~l~~i~~~Lkpg-G~lii~~~~~ 144 (226)
T d1ve3a1 107 IFID--SIVHFE---PLE-LNQVFKEVRRVLKPS-GKFIMYFTDL 144 (226)
T ss_dssp EEES--CGGGCC---HHH-HHHHHHHHHHHEEEE-EEEEEEEECH
T ss_pred EEec--chhhCC---hhH-HHHHHHHHHHHcCcC-cEEEEEEcCc
Confidence 9952 211111 112 446788999999999 9998877664
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=7.1e-13 Score=132.40 Aligned_cols=136 Identities=13% Similarity=0.108 Sum_probs=106.0
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCC------CCc
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGN------LNR 364 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~------~~~ 364 (494)
...+-|.=|+.|+.+++++||.+|||.|||||.+.+.+|.. .+..+|+++|+++++++.|++|++..+.. ...
T Consensus 79 tqiiypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~ 158 (324)
T d2b25a1 79 TAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEW 158 (324)
T ss_dssp SCCCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCC
T ss_pred CcccccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhcc
Confidence 55677788889999999999999999999999999988865 57789999999999999999999875421 123
Q ss_pred ccceeeeeecccccc--CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHH
Q psy19 365 ELKVSPLVCNVRQLC--FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALH 441 (494)
Q Consensus 365 ~~~i~~~~~Da~~l~--~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~ 441 (494)
.+++.+.++|+.... +.+..||.|+.|.|--. .++.++.++|||| |++++++|..+.+.+.+.
T Consensus 159 ~~nv~~~~~di~~~~~~~~~~~fD~V~LD~p~P~-------------~~l~~~~~~LKpG-G~lv~~~P~i~Qv~~~~~ 223 (324)
T d2b25a1 159 PDNVDFIHKDISGATEDIKSLTFDAVALDMLNPH-------------VTLPVFYPHLKHG-GVCAVYVVNITQVIELLD 223 (324)
T ss_dssp CCCEEEEESCTTCCC-------EEEEEECSSSTT-------------TTHHHHGGGEEEE-EEEEEEESSHHHHHHHHH
T ss_pred ccceeEEecchhhcccccCCCCcceEeecCcCHH-------------HHHHHHHHhccCC-CEEEEEeCCHHHHHHHHH
Confidence 456889999987653 34568999999987321 2355799999999 999999998765555543
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.41 E-value=7.9e-13 Score=123.71 Aligned_cols=121 Identities=16% Similarity=0.244 Sum_probs=95.0
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc--CCCCCeeEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC--FKPACVDGI 388 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~--~~~~~~D~I 388 (494)
++..|||+|||+|.+++..|..+|+..++|+|+++.++..|.+++...++ .++.++++|+..+. ++++++|.|
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l-----~Nv~~~~~Da~~l~~~~~~~~~d~v 103 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-----QNVKLLNIDADTLTDVFEPGEVKRV 103 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-----SSEEEECCCGGGHHHHCCTTSCCEE
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhc-----cCchhcccchhhhhcccCchhhhcc
Confidence 34589999999999999999999999999999999999999999998765 35789999998874 667889977
Q ss_pred EEc--CCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHH
Q psy19 389 VTD--LPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQA 439 (494)
Q Consensus 389 VtN--PPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~ 439 (494)
.++ .||-+.... ...-+...|++++.++|||| |.+.+.|.+..+....
T Consensus 104 ~i~fp~P~~k~~h~--k~Rl~~~~~l~~~~r~Lkpg-G~l~i~TD~~~y~~~~ 153 (204)
T d2fcaa1 104 YLNFSDPWPKKRHE--KRRLTYSHFLKKYEEVMGKG-GSIHFKTDNRGLFEYS 153 (204)
T ss_dssp EEESCCCCCSGGGG--GGSTTSHHHHHHHHHHHTTS-CEEEEEESCHHHHHHH
T ss_pred ccccccccchhhhc--chhhhHHHHHHHHHHhCCCC-cEEEEEECChHHHHHH
Confidence 665 344332111 11123457888999999999 9999998776654433
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.39 E-value=4.5e-12 Score=118.87 Aligned_cols=120 Identities=12% Similarity=0.086 Sum_probs=95.4
Q ss_pred ccchHHHHHHHHHH--hCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 293 TTLKPTIAYNMVRL--ASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 293 a~L~e~lAa~ll~l--a~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
.|.+..+|++++.- ...+||++|||+|||+|++...+|...+...|+|+|+++.|++.|+++++..+ ++.+
T Consensus 36 ~p~rsklaa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~-------ni~~ 108 (209)
T d1nt2a_ 36 VPWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN-------NIIP 108 (209)
T ss_dssp CGGGCHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS-------SEEE
T ss_pred CCcchHHHHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC-------CceE
Confidence 36888999988764 35689999999999999999999988777899999999999999999988643 3578
Q ss_pred eeeccccccCC---CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 371 LVCNVRQLCFK---PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 371 ~~~Da~~l~~~---~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+.+|+...+.. ...+|+|..|.+... + ...++.++.++|||| |++++..
T Consensus 109 i~~d~~~~~~~~~~~~~vd~v~~~~~~~~------~----~~~~l~~~~~~Lkpg-G~l~i~~ 160 (209)
T d1nt2a_ 109 LLFDASKPWKYSGIVEKVDLIYQDIAQKN------Q----IEILKANAEFFLKEK-GEVVIMV 160 (209)
T ss_dssp ECSCTTCGGGTTTTCCCEEEEEECCCSTT------H----HHHHHHHHHHHEEEE-EEEEEEE
T ss_pred EEeeccCccccccccceEEEEEecccChh------h----HHHHHHHHHHHhccC-CeEEEEE
Confidence 88888776432 236788888865431 1 346777899999999 9988764
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.38 E-value=2.2e-12 Score=122.31 Aligned_cols=116 Identities=17% Similarity=0.155 Sum_probs=89.3
Q ss_pred HHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCC
Q psy19 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKP 382 (494)
Q Consensus 303 ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~ 382 (494)
++.-....++.+|||+|||+|.+++.++.. +..++|+|+++.|++.|++++...+. ++.+.++|+.+++++
T Consensus 33 ~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~~~------~i~~~~~d~~~l~~~- 103 (251)
T d1wzna1 33 IFKEDAKREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNL------KIEFLQGDVLEIAFK- 103 (251)
T ss_dssp HHHHTCSSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC------CCEEEESCGGGCCCC-
T ss_pred HHHHhcCCCCCEEEEeCCCCCccchhhccc--ceEEEEEeeccccccccccccccccc------cchheehhhhhcccc-
Confidence 333334556779999999999999999887 67899999999999999999987653 468999999999876
Q ss_pred CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 383 ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 383 ~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
+.||+|++- ++.- . .-+.. -...+|+++.++|||| |.+++-.+..
T Consensus 104 ~~fD~I~~~--~~~~-~-~~~~~-~~~~~L~~~~~~Lkpg-G~lii~~~~~ 148 (251)
T d1wzna1 104 NEFDAVTMF--FSTI-M-YFDEE-DLRKLFSKVAEALKPG-GVFITDFPCW 148 (251)
T ss_dssp SCEEEEEEC--SSGG-G-GSCHH-HHHHHHHHHHHHEEEE-EEEEEEEEC-
T ss_pred cccchHhhh--hhhh-h-cCChH-HHHHHHHHHHHHcCCC-cEEEEEeccc
Confidence 589999982 2211 1 11112 2457888999999999 9998866654
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.37 E-value=8.7e-13 Score=121.19 Aligned_cols=108 Identities=12% Similarity=0.101 Sum_probs=80.6
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc---cCCCCCeeE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL---CFKPACVDG 387 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l---~~~~~~~D~ 387 (494)
.+.+|||+|||||++++||+.++. ..++.+|.|+.+++..++|++..+... ....+...|+... ......||+
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA-~~v~fVE~~~~a~~~ik~Ni~~l~~~~---~~~~~~~~d~~~~l~~~~~~~~fDl 118 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSS---EQAEVINQSSLDFLKQPQNQPHFDV 118 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCT---TTEEEECSCHHHHTTSCCSSCCEEE
T ss_pred ccceEeecccCccceeeeeeeecc-eeeEEeecccchhhhHhhHHhhhcccc---cccccccccccccccccccCCcccE
Confidence 677999999999999999999853 489999999999999999999876521 2345666776543 222357999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHh--hcccCCCcEEEEEecC
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIG--KIVRPQIGRAILLTSD 432 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~--rvLkpg~G~lvllt~~ 432 (494)
|++||||+.. ++...+..+. .+|+++ |.+++-++.
T Consensus 119 IFlDPPY~~~---------~~~~~l~~l~~~~~L~~~-~liiiE~~~ 155 (183)
T d2ifta1 119 VFLDPPFHFN---------LAEQAISLLCENNWLKPN-ALIYVETEK 155 (183)
T ss_dssp EEECCCSSSC---------HHHHHHHHHHHTTCEEEE-EEEEEEEES
T ss_pred EEechhHhhh---------hHHHHHHHHHHhCCcCCC-cEEEEEecC
Confidence 9999999753 2344444444 478988 877775554
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.36 E-value=3.5e-12 Score=117.56 Aligned_cols=113 Identities=12% Similarity=0.122 Sum_probs=89.8
Q ss_pred HHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCC
Q psy19 304 VRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPA 383 (494)
Q Consensus 304 l~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~ 383 (494)
+..+.+..+.+|||+|||+|..++..+.+ +..++|+|+++.|++.|++++...++ ..+.+...|+..+++ ++
T Consensus 23 ~~~~~~~~~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~-----~~~~~~~~d~~~~~~-~~ 94 (198)
T d2i6ga1 23 LAAAKVVAPGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGL-----DNLQTDLVDLNTLTF-DG 94 (198)
T ss_dssp HHHHTTSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-----TTEEEEECCTTTCCC-CC
T ss_pred HHHcccCCCCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhccc-----cchhhhheecccccc-cc
Confidence 33445544559999999999999999987 67999999999999999999987765 246788899988866 47
Q ss_pred CeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 384 CVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 384 ~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+||+|+++..+.. +.. . -...+++++.++|+|| |++++.+.
T Consensus 95 ~fD~I~~~~~~~~-~~~-~----~~~~~l~~~~~~L~pg-G~~~~~~~ 135 (198)
T d2i6ga1 95 EYDFILSTVVMMF-LEA-Q----TIPGLIANMQRCTKPG-GYNLIVAA 135 (198)
T ss_dssp CEEEEEEESCGGG-SCT-T----HHHHHHHHHHHTEEEE-EEEEEEEE
T ss_pred cccEEEEeeeeec-CCH-H----HHHHHHHHHHHHcCCC-cEEEEEEe
Confidence 8999999877642 221 1 2456788999999999 99888654
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=1.4e-12 Score=126.46 Aligned_cols=120 Identities=19% Similarity=0.269 Sum_probs=94.7
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
..++...+++.+..... .++.+|||+|||+|.++..++..+++..++|+|+++.|++.|+++.. ++.+.
T Consensus 66 ~~~l~~~~~~~l~~~~~-~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~----------~~~~~ 134 (268)
T d1p91a_ 66 YQPLRDAIVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP----------QVTFC 134 (268)
T ss_dssp THHHHHHHHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT----------TSEEE
T ss_pred hHHHHHHHHHHHHHhcC-CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccc----------cccce
Confidence 34566666666555443 45679999999999999999988888999999999999999987532 25789
Q ss_pred eeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHH
Q psy19 372 VCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQ 438 (494)
Q Consensus 372 ~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~ 438 (494)
++|+.++|+++++||+|++.-- ... ++++.|+|||| |++++.+++...+.+
T Consensus 135 ~~d~~~l~~~~~sfD~v~~~~~-------~~~--------~~e~~rvLkpg-G~l~~~~p~~~~l~e 185 (268)
T d1p91a_ 135 VASSHRLPFSDTSMDAIIRIYA-------PCK--------AEELARVVKPG-GWVITATPGPRHLME 185 (268)
T ss_dssp ECCTTSCSBCTTCEEEEEEESC-------CCC--------HHHHHHHEEEE-EEEEEEEECTTTTHH
T ss_pred eeehhhccCCCCCEEEEeecCC-------HHH--------HHHHHHHhCCC-cEEEEEeeCCcchHH
Confidence 9999999999899999998521 111 34688999999 999999997654443
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.36 E-value=1.1e-11 Score=117.77 Aligned_cols=135 Identities=10% Similarity=0.070 Sum_probs=101.2
Q ss_pred ccccccccc---ccccccccccchHHHHHHHHHHh---CCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHH
Q psy19 276 PVTQTSLHR---RNIVEFNITTLKPTIAYNMVRLA---SPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLV 348 (494)
Q Consensus 276 ~lsg~sL~~---Rgy~~~~~a~L~e~lAa~ll~la---~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al 348 (494)
...||.+.+ ..||.- .|.+..|||+++.-. .++||++|||+|||+|++...+|.. .+...|+|+|+++.++
T Consensus 34 ~vyge~~~~~~~~e~R~w--~p~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l 111 (227)
T d1g8aa_ 34 RVYGERVIKWEGEEYRIW--NPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVL 111 (227)
T ss_dssp CCTTCCEEEETTEEEEEC--CTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHH
T ss_pred cccCceEEEcCCeeEEEE--CCCccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHH
Confidence 345565543 244533 467999999987643 4789999999999999999998876 5678999999999999
Q ss_pred HHHHHHHHhccCCCCcccceeeeeeccccc---cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcE
Q psy19 349 LKTQANVLHNSGNLNRELKVSPLVCNVRQL---CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGR 425 (494)
Q Consensus 349 ~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l---~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~ 425 (494)
+.++.+++..+ .+..+..|+... +.....+|+|+.|.|+... ...++.++.++|||| |+
T Consensus 112 ~~a~~~a~~~~-------~~~~i~~d~~~~~~~~~~~~~vD~i~~d~~~~~~----------~~~~l~~~~~~Lkpg-G~ 173 (227)
T d1g8aa_ 112 RELVPIVEERR-------NIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQ----------AKILIDNAEVYLKRG-GY 173 (227)
T ss_dssp HHHHHHHSSCT-------TEEEEECCTTCGGGGTTTCCCEEEEEECCCSTTH----------HHHHHHHHHHHEEEE-EE
T ss_pred HHHHHHHHhcC-------CceEEEEECCCcccccccccceEEEEEEccccch----------HHHHHHHHHHhcccC-Ce
Confidence 99999987543 245666776554 2334689999999875321 335677899999999 98
Q ss_pred EEEEe
Q psy19 426 AILLT 430 (494)
Q Consensus 426 lvllt 430 (494)
+++.+
T Consensus 174 lvi~~ 178 (227)
T d1g8aa_ 174 GMIAV 178 (227)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88753
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.35 E-value=3.7e-12 Score=119.09 Aligned_cols=123 Identities=17% Similarity=0.240 Sum_probs=96.8
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc--CCCCCeeEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC--FKPACVDGI 388 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~--~~~~~~D~I 388 (494)
.+..|||+|||+|.++++.|...|+..++|+|+++.++..|..++...++ .++.+.++|+..+. +++.++|.|
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l-----~Ni~~~~~da~~l~~~~~~~~~~~i 105 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-----PNIKLLWVDGSDLTDYFEDGEIDRL 105 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-----SSEEEEECCSSCGGGTSCTTCCSEE
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc-----ccceeeecCHHHHhhhccCCceehh
Confidence 34589999999999999999999999999999999999999999998765 35789999998874 566789988
Q ss_pred EEcCC--CccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHH
Q psy19 389 VTDLP--FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALH 441 (494)
Q Consensus 389 VtNPP--YG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~ 441 (494)
.++-| |.+.-.. ..+-+...||..+.++|+|| |.+.+.|.+..++...+.
T Consensus 106 ~i~fPdPw~K~~h~--krRl~~~~~l~~~~~~Lkpg-G~l~i~TD~~~Y~~~~le 157 (204)
T d1yzha1 106 YLNFSDPWPKKRHE--KRRLTYKTFLDTFKRILPEN-GEIHFKTDNRGLFEYSLV 157 (204)
T ss_dssp EEESCCCCCSGGGG--GGSTTSHHHHHHHHHHSCTT-CEEEEEESCHHHHHHHHH
T ss_pred cccccccccchhhh--hhhhhHHHHHHHHHHhCCCC-cEEEEEECCccHHHHHHH
Confidence 77755 4332111 11123457888999999999 999999987766554443
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.35 E-value=1.9e-12 Score=121.68 Aligned_cols=120 Identities=14% Similarity=-0.017 Sum_probs=96.2
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
+.+.|.+.+.|+.++++++|++|||+|||||.++..+|.. .+...|+++|+++.+++.|++|++..++ .++.+.
T Consensus 57 ~i~~P~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~-----~n~~~~ 131 (213)
T d1dl5a1 57 TSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-----ENVIFV 131 (213)
T ss_dssp EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-----CSEEEE
T ss_pred eeccchhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc-----cccccc
Confidence 3466888889999999999999999999999999888765 4677999999999999999999998764 345788
Q ss_pred eeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 372 VCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 372 ~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
++|+.+..+..++||+|+++.... . . ...+.+.|||| |++++....
T Consensus 132 ~~d~~~~~~~~~~fD~I~~~~~~~----~---~-------p~~l~~~LkpG-G~lv~pv~~ 177 (213)
T d1dl5a1 132 CGDGYYGVPEFSPYDVIFVTVGVD----E---V-------PETWFTQLKEG-GRVIVPINL 177 (213)
T ss_dssp ESCGGGCCGGGCCEEEEEECSBBS----C---C-------CHHHHHHEEEE-EEEEEEBCB
T ss_pred cCchHHccccccchhhhhhhccHH----H---h-------HHHHHHhcCCC-cEEEEEECc
Confidence 899988765567899999975321 1 1 11356689999 999886544
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.33 E-value=2.1e-12 Score=121.30 Aligned_cols=104 Identities=14% Similarity=0.070 Sum_probs=82.2
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
.++.+|||+|||+|.++..++.. +..|+|+|+++.|++.|++|... .++++|+.++++++++||+|+
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~-----------~~~~~~~~~l~~~~~~fD~ii 107 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVK-----------NVVEAKAEDLPFPSGAFEAVL 107 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCS-----------CEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCEEEEECCCCchhccccccc--ceEEEEeeccccccccccccccc-----------cccccccccccccccccccee
Confidence 36679999999999999999887 67999999999999999986431 356789999998889999999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHH
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRK 434 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~ 434 (494)
+.=..-..+. + ...+|+++.++|||| |.+++.+++..
T Consensus 108 ~~~~~~~~~~---d----~~~~l~~i~r~Lk~g-G~~ii~~~~~~ 144 (246)
T d2avna1 108 ALGDVLSYVE---N----KDKAFSEIRRVLVPD-GLLIATVDNFY 144 (246)
T ss_dssp ECSSHHHHCS---C----HHHHHHHHHHHEEEE-EEEEEEEEBHH
T ss_pred eecchhhhhh---h----HHHHHHHHHhhcCcC-cEEEEEECCHH
Confidence 8322111121 2 245778999999999 99998887653
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.33 E-value=2.8e-12 Score=116.02 Aligned_cols=127 Identities=11% Similarity=0.073 Sum_probs=92.7
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCC-------cccc
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLN-------RELK 367 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~-------~~~~ 367 (494)
+++.+.+.+-.+ .+.+|.+|||+|||+|..++.+|.. |..|+|+|+++.|++.|++++...+.... ....
T Consensus 5 ~~~~~~~~~~~l-~~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (201)
T d1pjza_ 5 VNKDLQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPG 81 (201)
T ss_dssp STHHHHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSS
T ss_pred HHHHHHHHHHHc-CCCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccc
Confidence 456666655554 5678999999999999999999988 78999999999999999999875432100 0123
Q ss_pred eeeeeeccccccCC-CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 368 VSPLVCNVRQLCFK-PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 368 i~~~~~Da~~l~~~-~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+.++++|+.+++.. ...||+|++.--+. .-....+..+++.+.++|||| |++++...
T Consensus 82 ~~~~~~d~~~l~~~~~~~~D~i~~~~~l~------~l~~~~~~~~~~~i~~~Lkpg-G~l~l~~~ 139 (201)
T d1pjza_ 82 IEIWCGDFFALTARDIGHCAAFYDRAAMI------ALPADMRERYVQHLEALMPQA-CSGLLITL 139 (201)
T ss_dssp SEEEEECCSSSTHHHHHSEEEEEEESCGG------GSCHHHHHHHHHHHHHHSCSE-EEEEEEEE
T ss_pred cceecccccccccccccceeEEEEEeeeE------ecchhhhHHHHHHHHHhcCCC-cEEEEEEc
Confidence 56888898887532 35799998842211 111233567888999999999 98877554
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=1.3e-11 Score=124.10 Aligned_cols=130 Identities=19% Similarity=0.204 Sum_probs=100.3
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
.....+.|...++.++.+.++.+|||++||+|+|++.+|.. ...|+|+|+++.+++.|++|++.+|+ .++.++
T Consensus 193 N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~~na~~n~i-----~n~~~~ 265 (358)
T d1uwva2 193 NAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGL-----QNVTFY 265 (358)
T ss_dssp BHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTC-----CSEEEE
T ss_pred chhhhhHHHHHHHHhhccCCCceEEEecccccccchhcccc--ccEEEeccCcHHHHHHHHHhHHhccc-----ccceee
Confidence 34567778888888888889999999999999999999876 57999999999999999999999876 346788
Q ss_pred eeccccc-c---CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHh
Q psy19 372 VCNVRQL-C---FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHI 442 (494)
Q Consensus 372 ~~Da~~l-~---~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~ 442 (494)
.+|+.+. . .....+|+||.||| |.|.. +... .+.+. +| -+++.+++++..+.+.+..
T Consensus 266 ~~~~~~~~~~~~~~~~~~d~vilDPP---R~G~~----~~~~----~l~~~-~~--~~ivYVSCnp~TlaRDl~~ 326 (358)
T d1uwva2 266 HENLEEDVTKQPWAKNGFDKVLLDPA---RAGAA----GVMQ----QIIKL-EP--IRIVYVSCNPATLARDSEA 326 (358)
T ss_dssp ECCTTSCCSSSGGGTTCCSEEEECCC---TTCCH----HHHH----HHHHH-CC--SEEEEEESCHHHHHHHHHH
T ss_pred ecchhhhhhhhhhhhccCceEEeCCC---CccHH----HHHH----HHHHc-CC--CEEEEEeCCHHHHHHHHHH
Confidence 8887654 1 12357999999999 66642 1222 33332 33 5788999999877666543
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.33 E-value=5.5e-12 Score=120.65 Aligned_cols=123 Identities=17% Similarity=0.141 Sum_probs=93.3
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC-CCCCeeE
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF-KPACVDG 387 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~-~~~~~D~ 387 (494)
.+++.+|||+|||+|..+..++... ...++|+|+++.|++.|+..+...+. ...+.+.++|+...++ ..++||+
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~~-~~~v~GiD~S~~~l~~A~~r~~~~~~----~~~v~f~~~D~~~~~~~~~~~fD~ 96 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKR----RFKVFFRAQDSYGRHMDLGKEFDV 96 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSCC----SSEEEEEESCTTTSCCCCSSCEEE
T ss_pred CCCcCEEEEecccCcHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHhcCC----CcceEEEEcchhhhcccccccceE
Confidence 3578899999999999998887763 25799999999999999998886543 3467899999987765 3468999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHH
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALH 441 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~ 441 (494)
|+++-=..... ...+-...++..+.++|+|| |++++.+++...+...+.
T Consensus 97 V~~~~~l~~~~----~~~~~~~~~l~~i~~~Lk~g-G~~i~~~~~~~~i~~~~~ 145 (252)
T d1ri5a_ 97 ISSQFSFHYAF----STSESLDIAQRNIARHLRPG-GYFIMTVPSRDVILERYK 145 (252)
T ss_dssp EEEESCGGGGG----SSHHHHHHHHHHHHHTEEEE-EEEEEEEECHHHHHHHHH
T ss_pred EEEcceeeecC----CCHHHHHHHHHHHhceeCCC-CEEEEEecCHHHHHHHHH
Confidence 99953211111 12334567888999999999 999999998765555444
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.31 E-value=7.2e-12 Score=123.25 Aligned_cols=119 Identities=18% Similarity=0.170 Sum_probs=91.8
Q ss_pred HHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc
Q psy19 300 AYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC 379 (494)
Q Consensus 300 Aa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~ 379 (494)
...++..+++++|.+|||+|||.|++++.+|..+ ++.++|+++++..++.|++.+...|+ ..++.+...|...
T Consensus 50 ~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~-g~~v~git~s~~q~~~a~~~~~~~~l----~~~v~~~~~d~~~-- 122 (291)
T d1kpia_ 50 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY-DVNVIGLTLSENQYAHDKAMFDEVDS----PRRKEVRIQGWEE-- 122 (291)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHSCC----SSCEEEEECCGGG--
T ss_pred HHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhc-CcceeeccchHHHHHHHHHHHHhhcc----chhhhhhhhcccc--
Confidence 4446677789999999999999999999988765 58999999999999999999998765 4556777777643
Q ss_pred CCCCCeeEEEEcCCCccccCCc--cchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 380 FKPACVDGIVTDLPFGKRVGSK--SNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 380 ~~~~~~D~IVtNPPYG~r~~~~--~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
.+++||.|++-=-+- .++.. ....+-|+.+++.+.++|||| |++++
T Consensus 123 -~~~~fD~i~sie~~e-H~~~~~~~~~~~~~~~~f~~i~~~Lkpg-G~~~l 170 (291)
T d1kpia_ 123 -FDEPVDRIVSLGAFE-HFADGAGDAGFERYDTFFKKFYNLTPDD-GRMLL 170 (291)
T ss_dssp -CCCCCSEEEEESCGG-GTTCCSSCCSTTHHHHHHHHHHHTSCTT-CEEEE
T ss_pred -cccccceEeechhHH-hcchhhhhhHHHHHHHHHHHHHHhCCCC-CceEE
Confidence 357899999842221 11111 011245889999999999999 99986
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.30 E-value=6.7e-12 Score=119.14 Aligned_cols=112 Identities=13% Similarity=0.149 Sum_probs=85.9
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt 390 (494)
++.+|||+|||+|.+++.++.. +..++|+|+++.|++.|++++...+. ++.++++|+.++++. ++||+|+|
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~--g~~v~GvD~S~~ml~~A~~~~~~~~~------~v~~~~~d~~~~~~~-~~fD~i~~ 107 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGL------KPRLACQDISNLNIN-RKFDLITC 107 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTC------CCEEECCCGGGCCCS-CCEEEEEE
T ss_pred CCCeEEEEeCcCCHHHHHHHHh--CCccEeeccchhhhhhccccccccCc------cceeeccchhhhccc-ccccccce
Confidence 4578999999999999999987 56899999999999999999887653 368999999998764 68999998
Q ss_pred cC-CCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHH
Q psy19 391 DL-PFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLI 437 (494)
Q Consensus 391 NP-PYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~ 437 (494)
-- .++ .+....+ ...+++.+.++|+|| |.+++-..+...+.
T Consensus 108 ~~~~~~-~~~~~~~----~~~~l~~~~~~Lkpg-G~~i~~~~~~~~~~ 149 (246)
T d1y8ca_ 108 CLDSTN-YIIDSDD----LKKYFKAVSNHLKEG-GVFIFDINSYYKLS 149 (246)
T ss_dssp CTTGGG-GCCSHHH----HHHHHHHHHTTEEEE-EEEEEEEECHHHHH
T ss_pred eeeeee-ccCCHHH----HHHHHHHHHHhCCCC-eEEEEEeCCHHHHh
Confidence 21 111 1222222 345777999999999 99887555554333
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=5.9e-12 Score=118.82 Aligned_cols=129 Identities=10% Similarity=-0.025 Sum_probs=94.6
Q ss_pred cchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCC------------
Q psy19 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGN------------ 361 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~------------ 361 (494)
...+.|...+..+....++.+|||||||+|..++.+|.. |..|+|+|+++.||+.|+++....+..
T Consensus 28 ~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~ 105 (229)
T d2bzga1 28 QGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVF 105 (229)
T ss_dssp TCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEE
T ss_pred CCCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhccccccee
Confidence 345666666667777788999999999999999999987 789999999999999999887643210
Q ss_pred CCcccceeeeeecccccc-CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 362 LNRELKVSPLVCNVRQLC-FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 362 ~~~~~~i~~~~~Da~~l~-~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
......+++.++|++.++ ...+.||+|+.--=+. .... .....+++++.++|||| |++++++.
T Consensus 106 ~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~---~~~~---~~r~~~~~~~~~~Lkpg-G~~~l~~~ 169 (229)
T d2bzga1 106 KSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALV---AINP---GDRKCYADTMFSLLGKK-FQYLLCVL 169 (229)
T ss_dssp EETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTT---TSCG---GGHHHHHHHHHHTEEEE-EEEEEEEE
T ss_pred eecCCcEEEEEcchhhccccccCceeEEEEEEEEE---eccc---hhhHHHHHHHHhhcCCc-ceEEEEEc
Confidence 001246789999999885 4457899998732111 1111 12445667899999999 98877653
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=5e-12 Score=118.58 Aligned_cols=109 Identities=17% Similarity=0.193 Sum_probs=84.9
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeE
Q psy19 308 SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG 387 (494)
Q Consensus 308 ~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~ 387 (494)
...++.+|||+|||+|.++..++... ...|+|+|+++.|++.|++++...+. ..+++.++|+.++++++++||+
T Consensus 57 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~ak~~~~~~~~-----~~~~f~~~d~~~~~~~~~~fD~ 130 (222)
T d2ex4a1 57 NKTGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGK-----RVRNYFCCGLQDFTPEPDSYDV 130 (222)
T ss_dssp -CCCCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGG-----GEEEEEECCGGGCCCCSSCEEE
T ss_pred CCCCCCEEEEeccCCCHhhHHHHHhc-CCEEEEeecCHHHhhccccccccccc-----cccccccccccccccccccccc
Confidence 34567899999999999998876553 35899999999999999999886542 3568999999999877789999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
|++.--+.. +.. .-...+++++.++|+|| |.+++.
T Consensus 131 I~~~~~l~h-~~~-----~~~~~~l~~i~~~Lk~~-G~~~i~ 165 (222)
T d2ex4a1 131 IWIQWVIGH-LTD-----QHLAEFLRRCKGSLRPN-GIIVIK 165 (222)
T ss_dssp EEEESCGGG-SCH-----HHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred ccccccccc-chh-----hhhhhHHHHHHHhcCCc-ceEEEE
Confidence 999643221 111 12346788999999999 988875
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.29 E-value=1.7e-11 Score=114.94 Aligned_cols=109 Identities=14% Similarity=0.197 Sum_probs=83.9
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhc--CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCee
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLS--YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVD 386 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~--~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D 386 (494)
.+++.+|||+|||+|.+++.++.. .|+.+++|+|+++.|++.|++++...+. ...+.+..+|+..+++ ..+|
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~----~~~~~~~~~d~~~~~~--~~~d 110 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS----EIPVEILCNDIRHVEI--KNAS 110 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCC----SSCEEEECSCTTTCCC--CSEE
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcc----cchhhhccchhhcccc--ccce
Confidence 467889999999999999988875 3678999999999999999999986543 3456778888887654 5789
Q ss_pred EEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 387 GIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 387 ~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+|+++- ....-...+ ...+|+++.++|+|| |.+++..
T Consensus 111 ~i~~~~--~l~~~~~~d----~~~~l~~i~~~Lkpg-G~li~~~ 147 (225)
T d1im8a_ 111 MVILNF--TLQFLPPED----RIALLTKIYEGLNPN-GVLVLSE 147 (225)
T ss_dssp EEEEES--CGGGSCGGG----HHHHHHHHHHHEEEE-EEEEEEE
T ss_pred eeEEee--eccccChhh----HHHHHHHHHHhCCCC-ceeeccc
Confidence 998862 222222223 236777899999999 9988763
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.28 E-value=8.6e-12 Score=122.34 Aligned_cols=123 Identities=20% Similarity=0.197 Sum_probs=94.8
Q ss_pred ccccchHHH---HHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccc
Q psy19 291 NITTLKPTI---AYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELK 367 (494)
Q Consensus 291 ~~a~L~e~l---Aa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~ 367 (494)
...+|.+.- ...|+..+++++|.+|||+|||.|++++.+|... ++.|+|+++++..++.|++.+...|+ .++
T Consensus 39 ~~~tL~eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~----~~~ 113 (285)
T d1kpga_ 39 DDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSEN----LRS 113 (285)
T ss_dssp TTCCHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCC----CSC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhh----hhh
Confidence 344554432 2445666788999999999999999999988776 68999999999999999999987764 567
Q ss_pred eeeeeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 368 VSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 368 i~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
+.+..+|+..++ ++||.|++-=-+ +.++. .-|..+++++.++|+|| |++++
T Consensus 114 v~~~~~d~~~~~---~~fD~i~si~~~-eh~~~-----~~~~~~~~~~~r~Lkpg-G~~~l 164 (285)
T d1kpga_ 114 KRVLLAGWEQFD---EPVDRIVSIGAF-EHFGH-----ERYDAFFSLAHRLLPAD-GVMLL 164 (285)
T ss_dssp EEEEESCGGGCC---CCCSEEEEESCG-GGTCT-----TTHHHHHHHHHHHSCTT-CEEEE
T ss_pred hHHHHhhhhccc---ccccceeeehhh-hhcCc-----hhHHHHHHHHHhhcCCC-CcEEE
Confidence 889999998764 689999982111 01111 22667888999999999 99987
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.27 E-value=1.1e-11 Score=117.75 Aligned_cols=119 Identities=10% Similarity=0.118 Sum_probs=90.7
Q ss_pred ccchHHHHHHHHHHh---CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCccccee
Q psy19 293 TTLKPTIAYNMVRLA---SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVS 369 (494)
Q Consensus 293 a~L~e~lAa~ll~la---~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~ 369 (494)
.|-+..|||+++.-. ..++|.+|||+|||+|+++..+|...|+..|+|+|+++.|++.|+.++...+ .+.
T Consensus 53 ~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~-------ni~ 125 (230)
T d1g8sa_ 53 NPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERE-------NII 125 (230)
T ss_dssp CTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCT-------TEE
T ss_pred CCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhc-------ccc
Confidence 467889999987743 4689999999999999999999998888899999999999999999876432 345
Q ss_pred eeeecccccc-CCCC--CeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 370 PLVCNVRQLC-FKPA--CVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 370 ~~~~Da~~l~-~~~~--~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
++.+|+...+ +.+. .+|+++++..+- .+ ...++.++.++|||| |++++.
T Consensus 126 ~i~~d~~~~~~~~~~~~~v~~i~~~~~~~------~~----~~~~l~~~~r~LKpg-G~~~i~ 177 (230)
T d1g8sa_ 126 PILGDANKPQEYANIVEKVDVIYEDVAQP------NQ----AEILIKNAKWFLKKG-GYGMIA 177 (230)
T ss_dssp EEECCTTCGGGGTTTCCCEEEEEECCCST------TH----HHHHHHHHHHHEEEE-EEEEEE
T ss_pred eEEEeeccCcccccccceeEEeeccccch------HH----HHHHHHHHHHhcccC-ceEEEE
Confidence 6777777653 2333 455566654321 12 345677899999999 988875
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.27 E-value=1e-11 Score=121.39 Aligned_cols=113 Identities=18% Similarity=0.159 Sum_probs=88.4
Q ss_pred HHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC
Q psy19 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380 (494)
Q Consensus 301 a~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~ 380 (494)
..++..+++++|++|||+|||.|++++.++... ++.|+|+|+++.+++.|++.+...|+ ...+.+...|...++
T Consensus 42 ~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~~~~~l----~~~~~~~~~d~~~~~- 115 (280)
T d2fk8a1 42 DLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDT----NRSRQVLLQGWEDFA- 115 (280)
T ss_dssp HHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCC----SSCEEEEESCGGGCC-
T ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhC-ceeEEEecchHHHHHHHHHHHHhhcc----ccchhhhhhhhhhhc-
Confidence 345555678999999999999999999988765 57999999999999999999997765 345677777877653
Q ss_pred CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
++||.|++-=-+. .++ ..-|..+++++.++|||| |++++
T Consensus 116 --~~fD~i~si~~~e-h~~-----~~~~~~~f~~i~~~Lkpg-G~~~i 154 (280)
T d2fk8a1 116 --EPVDRIVSIEAFE-HFG-----HENYDDFFKRCFNIMPAD-GRMTV 154 (280)
T ss_dssp --CCCSEEEEESCGG-GTC-----GGGHHHHHHHHHHHSCTT-CEEEE
T ss_pred --cchhhhhHhhHHH-Hhh-----hhhHHHHHHHHHhccCCC-ceEEE
Confidence 6899999832111 111 122678888999999999 99987
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.27 E-value=2e-11 Score=118.90 Aligned_cols=120 Identities=13% Similarity=0.050 Sum_probs=93.4
Q ss_pred HHHHHHHHHHh-CCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 297 PTIAYNMVRLA-SPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 297 e~lAa~ll~la-~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
+.+...+++.. ....+.+|||+|||+|.+++.++...+ +..++|+|+++.+++.|++|+...+. ++.+.++|
T Consensus 12 ~d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~------~~~f~~~d 85 (281)
T d2gh1a1 12 DDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY------DSEFLEGD 85 (281)
T ss_dssp HHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS------EEEEEESC
T ss_pred HHHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc------cccccccc
Confidence 44445555433 456678999999999999999888765 57899999999999999999986542 46889999
Q ss_pred cccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 375 VRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 375 a~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+.+++++ ++||+|+++--+. .+. + ...+++++.++|||| |.++++.++
T Consensus 86 ~~~~~~~-~~fD~v~~~~~l~-~~~---d----~~~~l~~~~~~Lkpg-G~lii~~~~ 133 (281)
T d2gh1a1 86 ATEIELN-DKYDIAICHAFLL-HMT---T----PETMLQKMIHSVKKG-GKIICFEPH 133 (281)
T ss_dssp TTTCCCS-SCEEEEEEESCGG-GCS---S----HHHHHHHHHHTEEEE-EEEEEEECC
T ss_pred ccccccc-CCceEEEEehhhh-cCC---C----HHHHHHHHHHHcCcC-cEEEEEECC
Confidence 9998875 5899999975432 122 2 235677899999999 999988875
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=7.6e-12 Score=118.51 Aligned_cols=127 Identities=20% Similarity=0.086 Sum_probs=96.1
Q ss_pred cccchHHHHHHHHHHh--CCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccce
Q psy19 292 ITTLKPTIAYNMVRLA--SPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKV 368 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la--~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i 368 (494)
..-+.|.+.+.|+.+. ..++|++|||+|||||.....+|.+ .+...|+|+|+++++++.|++|++..++.......+
T Consensus 55 ~~is~P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~ 134 (224)
T d1i1na_ 55 ATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRV 134 (224)
T ss_dssp EEECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSE
T ss_pred hhhhhhHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccce
Confidence 3445678888899877 6789999999999999887666654 567899999999999999999998765421112456
Q ss_pred eeeeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 369 SPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 369 ~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
.+..+|+....+..+.||+|+++--.. . . . ..+.+.|||| |++++.....
T Consensus 135 ~~~~gD~~~~~~~~~~fD~I~~~~~~~----~---i---p----~~l~~~LkpG-G~LV~pv~~~ 184 (224)
T d1i1na_ 135 QLVVGDGRMGYAEEAPYDAIHVGAAAP----V---V---P----QALIDQLKPG-GRLILPVGPA 184 (224)
T ss_dssp EEEESCGGGCCGGGCCEEEEEECSBBS----S---C---C----HHHHHTEEEE-EEEEEEESCT
T ss_pred EEEEeecccccchhhhhhhhhhhcchh----h---c---C----HHHHhhcCCC-cEEEEEEccC
Confidence 788999988766667999999974221 1 1 1 1366789999 9999876543
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.26 E-value=7.1e-11 Score=113.09 Aligned_cols=116 Identities=12% Similarity=0.012 Sum_probs=90.1
Q ss_pred HHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc
Q psy19 300 AYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC 379 (494)
Q Consensus 300 Aa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~ 379 (494)
+..++....+.+..+|||+|||+|.+++.++..+|+..++++|+ +.+++.|++++...++ ..++.++.+|+++.
T Consensus 69 ~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~rv~~~~~D~~~~- 142 (253)
T d1tw3a2 69 FDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGL----SDRVDVVEGDFFEP- 142 (253)
T ss_dssp THHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTC----TTTEEEEECCTTSC-
T ss_pred HHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhc----ccchhhccccchhh-
Confidence 34455566777778999999999999999999999999999998 6799999999998764 46789999998763
Q ss_pred CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 380 FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 380 ~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
.+ .+||+|++.-=... .. .+-...+|+++.++|||| |++++.
T Consensus 143 ~~-~~~D~v~~~~vlh~-~~-----d~~~~~~L~~~~~~LkPG-G~l~i~ 184 (253)
T d1tw3a2 143 LP-RKADAIILSFVLLN-WP-----DHDAVRILTRCAEALEPG-GRILIH 184 (253)
T ss_dssp CS-SCEEEEEEESCGGG-SC-----HHHHHHHHHHHHHTEEEE-EEEEEE
T ss_pred cc-cchhheeecccccc-CC-----chhhHHHHHHHHHhcCCC-cEEEEE
Confidence 22 57999998522110 11 122346788999999999 999885
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.25 E-value=1e-11 Score=114.90 Aligned_cols=128 Identities=17% Similarity=0.266 Sum_probs=100.4
Q ss_pred HHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc
Q psy19 299 IAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378 (494)
Q Consensus 299 lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l 378 (494)
|...++.+..++++..++|.+||+|+.....+...|++.++|+|.|+.|++.|+.++...+ .++.++++++.++
T Consensus 11 ll~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~------~r~~~~~~~f~~~ 84 (192)
T d1m6ya2 11 MVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS------DRVSLFKVSYREA 84 (192)
T ss_dssp THHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT------TTEEEEECCGGGH
T ss_pred HHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc------ccccchhHHHhhH
Confidence 3444566778899999999999999999888888888999999999999999999998653 4568888888765
Q ss_pred c-----CCCCCeeEEEEcCCCcc-ccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 379 C-----FKPACVDGIVTDLPFGK-RVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 379 ~-----~~~~~~D~IVtNPPYG~-r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
. +..++||.|+.|.++.. .+............+|..+.++|+|| |++++++-..
T Consensus 85 ~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~g-G~l~ii~f~s 144 (192)
T d1m6ya2 85 DFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPG-GRIVVISFHS 144 (192)
T ss_dssp HHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEE-EEEEEEESSH
T ss_pred HHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCC-Ceeeeecccc
Confidence 2 33468999999977521 11112223445667899999999999 9999988764
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.19 E-value=4.8e-11 Score=116.44 Aligned_cols=131 Identities=16% Similarity=0.073 Sum_probs=87.1
Q ss_pred HHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc
Q psy19 300 AYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC 379 (494)
Q Consensus 300 Aa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~ 379 (494)
.+.++.+.+..++.+|||+|||+|.+++.+|.. +..|+|+|+++.||+.|++++..++.... .....+..+|+..++
T Consensus 45 ~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 121 (292)
T d1xvaa_ 45 KAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPA-FDKWVIEEANWLTLD 121 (292)
T ss_dssp HHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHH-HHTCEEEECCGGGHH
T ss_pred HHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccc-cceeeeeeccccccc
Confidence 344455555566789999999999999999987 67999999999999999999987653111 012233444544331
Q ss_pred ---CCCCCeeEEEEcC-CCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHH
Q psy19 380 ---FKPACVDGIVTDL-PFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKH 435 (494)
Q Consensus 380 ---~~~~~~D~IVtNP-PYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~ 435 (494)
+...+||.|++-- -+. .+........-...+|+++.++|||| |.+++-+.+...
T Consensus 122 ~~~~~~~~fd~v~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~li~~~~~~~~ 179 (292)
T d1xvaa_ 122 KDVPAGDGFDAVICLGNSFA-HLPDSKGDQSEHRLALKNIASMVRPG-GLLVIDHRNYDY 179 (292)
T ss_dssp HHSCCTTCEEEEEECSSCGG-GSCCTTSSSHHHHHHHHHHHHTEEEE-EEEEEEEECHHH
T ss_pred cccCCCCCceEEEEecCchh-hcCCcccChHHHHHHHHHHHHHcCcC-cEEEEeecCHHH
Confidence 1236899999721 111 11111111122456888999999999 998887766543
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=1.3e-11 Score=123.17 Aligned_cols=128 Identities=9% Similarity=-0.022 Sum_probs=97.2
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCC---C-cccc
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNL---N-RELK 367 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~---~-~~~~ 367 (494)
...+.+.+.+.|+..++.+++++|||+|||+|.+++.+|...+...++|+|+++.+++.|+.+++...... + ...+
T Consensus 132 ~~e~~~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~ 211 (328)
T d1nw3a_ 132 YGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAE 211 (328)
T ss_dssp CCCCCHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred hhhhHHHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCc
Confidence 44577788889999999999999999999999999999988777789999999999999998876532100 0 1246
Q ss_pred eeeeeeccccccCCCCC--eeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 368 VSPLVCNVRQLCFKPAC--VDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 368 i~~~~~Da~~l~~~~~~--~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+.++++|+.++++.+.. .|+|++|= ... ..+ ....|.++.+.|||| |+++..
T Consensus 212 i~~~~gd~~~~~~~~~~~~advi~~~~---~~f--~~~----~~~~l~e~~r~LKpG-g~iv~~ 265 (328)
T d1nw3a_ 212 YTLERGDFLSEEWRERIANTSVIFVNN---FAF--GPE----VDHQLKERFANMKEG-GRIVSS 265 (328)
T ss_dssp EEEEECCTTSHHHHHHHHHCSEEEECC---TTT--CHH----HHHHHHHHHTTCCTT-CEEEES
T ss_pred eEEEECcccccccccccCcceEEEEcc---eec--chH----HHHHHHHHHHhCCCC-cEEEEe
Confidence 78999999988765432 47787752 111 112 235667899999999 998764
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=7.3e-11 Score=116.38 Aligned_cols=118 Identities=14% Similarity=0.066 Sum_probs=88.5
Q ss_pred HHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc
Q psy19 298 TIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ 377 (494)
Q Consensus 298 ~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~ 377 (494)
....+|.......+|.+|||+|||+|.+++.||..++ ..|+|+|.++.+.. |++++..++. ..++.++++|+.+
T Consensus 22 ~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~-a~~~~~~~~~----~~~i~~~~~~~~~ 95 (311)
T d2fyta1 22 SYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQ-AMDIIRLNKL----EDTITLIKGKIEE 95 (311)
T ss_dssp HHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHH-HHHHHHHTTC----TTTEEEEESCTTT
T ss_pred HHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHH-HHHHHHHhCC----CccceEEEeeHHH
Confidence 3445565555666789999999999999999998743 58999999998765 5666665553 4678999999999
Q ss_pred ccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEE
Q psy19 378 LCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAI 427 (494)
Q Consensus 378 l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lv 427 (494)
++++..+||+|++++....-... .....++....++|+|| |+++
T Consensus 96 l~~~~~~~D~Ivse~~~~~~~~e-----~~~~~~~~a~~~~Lkp~-G~ii 139 (311)
T d2fyta1 96 VHLPVEKVDVIISEWMGYFLLFE-----SMLDSVLYAKNKYLAKG-GSVY 139 (311)
T ss_dssp SCCSCSCEEEEEECCCBTTBTTT-----CHHHHHHHHHHHHEEEE-EEEE
T ss_pred hcCccccceEEEEeeeeeecccc-----cccHHHHHHHHhcCCCC-cEEe
Confidence 98777899999999765432221 12445555678899999 8764
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.18 E-value=3e-10 Score=109.15 Aligned_cols=116 Identities=12% Similarity=0.005 Sum_probs=89.5
Q ss_pred HHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC
Q psy19 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380 (494)
Q Consensus 301 a~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~ 380 (494)
..++....+.+..+|||+|||+|.++++++..+|+.+++++|+ |.+++.|++++...++ .+++.+..+|++. +.
T Consensus 71 ~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~----~~ri~~~~~d~~~-~~ 144 (256)
T d1qzza2 71 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGL----ADRVTVAEGDFFK-PL 144 (256)
T ss_dssp HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC----TTTEEEEECCTTS-CC
T ss_pred HHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCC----cceeeeeeeeccc-cc
Confidence 3444555667778999999999999999999999999999998 8899999999997765 4567889999876 34
Q ss_pred CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+ ..+|+|++.-=... . ..+-...+|+++.+.|+|| |+++++-
T Consensus 145 p-~~~D~v~~~~vLh~-~-----~d~~~~~lL~~i~~~Lkpg-G~llI~d 186 (256)
T d1qzza2 145 P-VTADVVLLSFVLLN-W-----SDEDALTILRGCVRALEPG-GRLLVLD 186 (256)
T ss_dssp S-CCEEEEEEESCGGG-S-----CHHHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred c-ccchhhhccccccc-c-----CcHHHHHHHHHHHhhcCCc-ceeEEEE
Confidence 3 46999988422110 1 1122346788999999999 9988863
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.18 E-value=1.2e-10 Score=111.83 Aligned_cols=114 Identities=11% Similarity=0.027 Sum_probs=87.9
Q ss_pred HHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC
Q psy19 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380 (494)
Q Consensus 301 a~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~ 380 (494)
..++......++.+|||+|||+|.++..++... ...|+|+|+++.+++.|++++... ..+++.++|+.++++
T Consensus 83 ~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~-~~~v~~vD~s~~~l~~a~~~~~~~-------~~~~~~~~d~~~~~~ 154 (254)
T d1xtpa_ 83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM-------PVGKFILASMETATL 154 (254)
T ss_dssp HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS-------SEEEEEESCGGGCCC
T ss_pred HHHHhhCCCCCCCeEEEecccCChhhHHHHhhc-CceEEEEcCCHHHHHhhhcccccc-------ccceeEEcccccccc
Confidence 344555555677899999999999998876543 247999999999999999887632 246889999999988
Q ss_pred CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
++++||+|++.-.+.. +.. .-...+++++.++|+|| |.+++.
T Consensus 155 ~~~~fD~I~~~~vl~h-l~d-----~d~~~~l~~~~~~Lkpg-G~iii~ 196 (254)
T d1xtpa_ 155 PPNTYDLIVIQWTAIY-LTD-----ADFVKFFKHCQQALTPN-GYIFFK 196 (254)
T ss_dssp CSSCEEEEEEESCGGG-SCH-----HHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred CCCccceEEeeccccc-cch-----hhhHHHHHHHHHhcCCC-cEEEEE
Confidence 7789999999876542 211 11346788999999999 988874
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=6.6e-11 Score=111.69 Aligned_cols=109 Identities=13% Similarity=0.046 Sum_probs=82.5
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc--cCCCCCeeE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL--CFKPACVDG 387 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l--~~~~~~~D~ 387 (494)
.+|.+|||+|||+|..++.++... ...++|+|+|+.+++.|++++...+ ..+.++..|+..+ ++++++||.
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~-~~~v~~id~s~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~fD~ 124 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQT------HKVIPLKGLWEDVAPTLPDGHFDG 124 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGGCS------SEEEEEESCHHHHGGGSCTTCEEE
T ss_pred cCCCeEEEeeccchHHHHHHHHcC-CCeEEEeCCCHHHHHHHHHHhhhcc------cccccccccccccccccccccccc
Confidence 367899999999999999888753 3689999999999999999987543 2356667776654 566789999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
|+.|+........ .......+++++.|+|||| |++++.
T Consensus 125 i~fD~~~~~~~~~---~~~~~~~~~~~~~r~LkpG-G~~~~~ 162 (229)
T d1zx0a1 125 ILYDTYPLSEETW---HTHQFNFIKNHAFRLLKPG-GVLTYC 162 (229)
T ss_dssp EEECCCCCBGGGT---TTHHHHHHHHTHHHHEEEE-EEEEEC
T ss_pred eeecccccccccc---cccCHHHHHHHHHHHcCCC-cEEEEE
Confidence 9999864322211 1223556888999999999 988764
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.16 E-value=4.5e-11 Score=118.40 Aligned_cols=106 Identities=16% Similarity=0.030 Sum_probs=83.8
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
.+|.+|||+|||+|.+++.||..++ ..|+|+|.++. +..|+++++.++. .+++.++++|+.+++++.+++|+|+
T Consensus 32 ~~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~-~~~a~~~~~~n~~----~~~v~~~~~~~~~~~~~~~~~D~iv 105 (316)
T d1oria_ 32 FKDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSI-SDYAVKIVKANKL----DHVVTIIKGKVEEVELPVEKVDIII 105 (316)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTT-HHHHHHHHHHTTC----TTTEEEEESCTTTCCCSSSCEEEEE
T ss_pred CCcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHH-HhhhhhHHHHhCC----ccccceEeccHHHcccccceeEEEe
Confidence 4788999999999999999998743 47999999975 5778888887765 5678999999999988778999999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEE
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAI 427 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lv 427 (494)
+++.... +..... +..++..+.++|+|| |+++
T Consensus 106 s~~~~~~-l~~e~~----~~~~l~~~~r~Lkp~-G~ii 137 (316)
T d1oria_ 106 SEWMGYC-LFYESM----LNTVLHARDKWLAPD-GLIF 137 (316)
T ss_dssp ECCCBBT-BTBTCC----HHHHHHHHHHHEEEE-EEEE
T ss_pred eeeeeee-eccHHH----HHHHHHHHHhcCCCC-eEEE
Confidence 9876432 222222 456666899999999 8664
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.15 E-value=8.8e-11 Score=116.79 Aligned_cols=114 Identities=14% Similarity=0.097 Sum_probs=86.7
Q ss_pred HHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC
Q psy19 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380 (494)
Q Consensus 301 a~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~ 380 (494)
.++.......+|.+|||+|||+|.+++.||..+. ..|+|+|.++ ++..|++++..++. ..++.++++|+.++++
T Consensus 28 ~aI~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga-~~V~avd~s~-~~~~a~~~~~~~~~----~~~i~~i~~~~~~l~~ 101 (328)
T d1g6q1_ 28 NAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGA-KHVIGVDMSS-IIEMAKELVELNGF----SDKITLLRGKLEDVHL 101 (328)
T ss_dssp HHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCC-SEEEEEESST-HHHHHHHHHHHTTC----TTTEEEEESCTTTSCC
T ss_pred HHHHhccccCCcCEEEEeCCCCCHHHHHHHHhCC-CEEEEEeCCH-HHHHHHHHHHHhCc----cccceEEEeehhhccC
Confidence 3444433445788999999999999999998742 5899999997 66889999988765 5678899999999988
Q ss_pred CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEE
Q psy19 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRA 426 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~l 426 (494)
++.++|+|++++....-. .... ...++....++|||| |++
T Consensus 102 ~~~~~D~i~se~~~~~~~-~e~~----~~~~~~a~~r~Lkpg-G~i 141 (328)
T d1g6q1_ 102 PFPKVDIIISEWMGYFLL-YESM----MDTVLYARDHYLVEG-GLI 141 (328)
T ss_dssp SSSCEEEEEECCCBTTBS-TTCC----HHHHHHHHHHHEEEE-EEE
T ss_pred cccceeEEEEEecceeec-cchh----HHHHHHHHHhccCCC-eEE
Confidence 878999999987643222 1222 334555688999999 866
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.11 E-value=1.5e-10 Score=108.51 Aligned_cols=104 Identities=13% Similarity=0.120 Sum_probs=80.0
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
..+.+|||+|||+|.++..++.. +..|+|+|+++.+++.|+.+.. ..+.+.++|+.+++++ ++||+|+
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~--g~~v~giD~s~~~i~~a~~~~~---------~~~~~~~~~~~~~~~~-~~fD~I~ 86 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRLK---------DGITYIHSRFEDAQLP-RRYDNIV 86 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSC---------SCEEEEESCGGGCCCS-SCEEEEE
T ss_pred CCCCcEEEEeCCCcHHHHHHHHc--CCeEEEEeCcHHHhhhhhcccc---------cccccccccccccccc-ccccccc
Confidence 45668999999999999988876 5689999999999999997743 2367889999888764 7999999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHh-hcccCCCcEEEEEecCHH
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIG-KIVRPQIGRAILLTSDRK 434 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~-rvLkpg~G~lvllt~~~~ 434 (494)
+.=- +....+. ..++.++. ++|+|| |.+++.+|+..
T Consensus 87 ~~~v----leh~~d~----~~~l~~i~~~~Lk~g-G~l~i~~pn~~ 123 (225)
T d2p7ia1 87 LTHV----LEHIDDP----VALLKRINDDWLAEG-GRLFLVCPNAN 123 (225)
T ss_dssp EESC----GGGCSSH----HHHHHHHHHTTEEEE-EEEEEEEECTT
T ss_pred ccce----eEecCCH----HHHHHHHHHHhcCCC-ceEEEEeCCcc
Confidence 9422 1111222 35566787 799999 99999887643
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.09 E-value=1.6e-10 Score=106.35 Aligned_cols=97 Identities=18% Similarity=0.126 Sum_probs=76.6
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
.++.+|||+|||+|.++..++ .++|+|+++.+++.|+++ + +.+.++|+.++++++++||+|+
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~----~--------~~~~~~d~~~l~~~~~~fD~I~ 96 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR----G--------VFVLKGTAENLPLKDESFDFAL 96 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT----T--------CEEEECBTTBCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCcccccccc------eEEEEeCChhhccccccc----c--------cccccccccccccccccccccc
Confidence 456689999999999987653 468999999999999864 1 3689999999998888999999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
+.-= +....+ ...+++++.++|+|| |.+++.+++.
T Consensus 97 ~~~~----l~h~~d----~~~~l~~~~~~L~pg-G~l~i~~~~~ 131 (208)
T d1vlma_ 97 MVTT----ICFVDD----PERALKEAYRILKKG-GYLIVGIVDR 131 (208)
T ss_dssp EESC----GGGSSC----HHHHHHHHHHHEEEE-EEEEEEEECS
T ss_pred cccc----cccccc----cccchhhhhhcCCCC-ceEEEEecCC
Confidence 9632 111123 346778999999999 9999988754
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.08 E-value=3.7e-10 Score=106.73 Aligned_cols=115 Identities=14% Similarity=-0.032 Sum_probs=90.3
Q ss_pred cchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
-..|.+.+.|+..+.+++|++|||+|||||.+...+|.. ..+|+++|+++.+++.|++|+... .++.++.+
T Consensus 53 ~~~p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l--~~~V~aiE~~~~~~~~A~~~~~~~-------~nv~~~~~ 123 (224)
T d1vbfa_ 53 TTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSYY-------NNIKLILG 123 (224)
T ss_dssp ECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTC-------SSEEEEES
T ss_pred eehhhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHH--hcccccccccHHHHHHHHHHHhcc-------cccccccC
Confidence 356777778999999999999999999999998888877 579999999999999999987632 35789999
Q ss_pred ccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 374 NVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 374 Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
|........++||.|+++-... .. . ..+.+.|+|| |++++....
T Consensus 124 d~~~g~~~~~pfD~Iiv~~a~~-------~i---p----~~l~~qLk~G-GrLV~pvg~ 167 (224)
T d1vbfa_ 124 DGTLGYEEEKPYDRVVVWATAP-------TL---L----CKPYEQLKEG-GIMILPIGV 167 (224)
T ss_dssp CGGGCCGGGCCEEEEEESSBBS-------SC---C----HHHHHTEEEE-EEEEEEECS
T ss_pred chhhcchhhhhHHHHHhhcchh-------hh---h----HHHHHhcCCC-CEEEEEEcC
Confidence 9877544457899999863211 11 1 1355689999 999987654
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.03 E-value=7.6e-10 Score=103.88 Aligned_cols=119 Identities=17% Similarity=0.052 Sum_probs=94.4
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
.-+.|.+.+.|+.++..++|++|||+|||||..+..+|.+. +..|+++|+++..++.|++|+...|. .++.+.+
T Consensus 60 ~is~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~-----~nv~~~~ 133 (215)
T d1jg1a_ 60 TVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGV-----KNVHVIL 133 (215)
T ss_dssp EECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEE
T ss_pred hhhhhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCC-----ceeEEEE
Confidence 34668888999999999999999999999999988877653 46799999999999999999998774 4578999
Q ss_pred eccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 373 CNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 373 ~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+|........+.||.|+..-... .. .. .+.+.|+|| |++++....
T Consensus 134 gd~~~g~~~~~pfD~Iiv~~a~~----~i------p~----~l~~qL~~g-GrLv~pv~~ 178 (215)
T d1jg1a_ 134 GDGSKGFPPKAPYDVIIVTAGAP----KI------PE----PLIEQLKIG-GKLIIPVGS 178 (215)
T ss_dssp SCGGGCCGGGCCEEEEEECSBBS----SC------CH----HHHHTEEEE-EEEEEEECS
T ss_pred CccccCCcccCcceeEEeecccc----cC------CH----HHHHhcCCC-CEEEEEEcc
Confidence 99988644457899999953211 11 11 245579999 999886654
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.99 E-value=7.1e-10 Score=113.31 Aligned_cols=126 Identities=16% Similarity=0.064 Sum_probs=88.9
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCC---C-cccce
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNL---N-RELKV 368 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~---~-~~~~i 368 (494)
+.+.+.+.+.|+..+++++|++|||+|||+|.+++.+|..++...++|+|+++.+++.|+++++..+... + ....+
T Consensus 198 GEl~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~ 277 (406)
T d1u2za_ 198 GELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNV 277 (406)
T ss_dssp CCBCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCE
T ss_pred ccCCHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccc
Confidence 4578888889999999999999999999999999999988776789999999999999999987643100 0 00111
Q ss_pred ee-eeeccccccCC---CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 369 SP-LVCNVRQLCFK---PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 369 ~~-~~~Da~~l~~~---~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
.+ ..+|+...+.. -...|+|++|= | .. ..+ ....|.++.+.|||| |++++
T Consensus 278 ~~~~~~~f~~~~~~d~~~~~adVV~inn-~--~f--~~~----l~~~L~ei~r~LKPG-GrIVs 331 (406)
T d1u2za_ 278 EFSLKKSFVDNNRVAELIPQCDVILVNN-F--LF--DED----LNKKVEKILQTAKVG-CKIIS 331 (406)
T ss_dssp EEEESSCSTTCHHHHHHGGGCSEEEECC-T--TC--CHH----HHHHHHHHHTTCCTT-CEEEE
T ss_pred eeeeeechhhccccccccccceEEEEec-c--cC--chH----HHHHHHHHHHhcCCC-cEEEE
Confidence 22 23444332211 12567888752 1 11 112 345667899999999 99765
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.89 E-value=2.9e-09 Score=100.37 Aligned_cols=123 Identities=16% Similarity=0.087 Sum_probs=89.6
Q ss_pred chHHHHHHHHHHh--CCCCCCEEEEEcCCcChHHHHHHhc------CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCccc
Q psy19 295 LKPTIAYNMVRLA--SPIPGDVFLDPMCGGGTIPVECSLS------YPHTFFVCGDINEKLVLKTQANVLHNSGNLNREL 366 (494)
Q Consensus 295 L~e~lAa~ll~la--~~~~g~~VLDP~CGSGtilIEAA~~------~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~ 366 (494)
+.|.+.+.|+.+. ..+++++|||+|||||.+..-++.. .++.+|+++|+++++++.|++|+...+....-..
T Consensus 62 s~P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~ 141 (223)
T d1r18a_ 62 SAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSG 141 (223)
T ss_dssp CCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ehhhhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCcc
Confidence 4577778888876 6789999999999999987666654 1235899999999999999999865432100013
Q ss_pred ceeeeeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 367 KVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 367 ~i~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
++.+.++|........+.||.|+++-... . . .. .+.+.|+|| |++++....
T Consensus 142 nv~~~~~d~~~~~~~~~~fD~Iiv~~a~~----~---~---p~----~l~~~Lk~g-G~lV~pvg~ 192 (223)
T d1r18a_ 142 QLLIVEGDGRKGYPPNAPYNAIHVGAAAP----D---T---PT----ELINQLASG-GRLIVPVGP 192 (223)
T ss_dssp SEEEEESCGGGCCGGGCSEEEEEECSCBS----S---C---CH----HHHHTEEEE-EEEEEEESC
T ss_pred EEEEEecccccccccccceeeEEEEeech----h---c---hH----HHHHhcCCC-cEEEEEEec
Confidence 57889999988755557899999964321 1 1 11 356799999 999886653
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=3.9e-09 Score=101.59 Aligned_cols=127 Identities=11% Similarity=-0.024 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhc----CCC--CeEEEEeCCHHHHHHHHHHHHhccCCCCccccee
Q psy19 296 KPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS----YPH--TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVS 369 (494)
Q Consensus 296 ~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~----~~~--~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~ 369 (494)
.+.+...+-.+...+++.+|||+|||+|.+...++.. +++ ..++|+|+++.|++.|++++.....-. ...+.
T Consensus 25 ~~~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~--~~~~~ 102 (280)
T d1jqea_ 25 DKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLE--NVKFA 102 (280)
T ss_dssp HHTHHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCT--TEEEE
T ss_pred HHHHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccc--ccccc
Confidence 3444444444445556668999999999987665442 333 467999999999999999987432100 01223
Q ss_pred eeeeccccc------cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 370 PLVCNVRQL------CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 370 ~~~~Da~~l------~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
+.+.++..+ +.++++||+|++.--+ ....+ ...+++.+.++|+|| |.+++++.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l----~~~~d----~~~~l~~l~~~Lkpg-G~l~i~~~~~ 163 (280)
T d1jqea_ 103 WHKETSSEYQSRMLEKKELQKWDFIHMIQML----YYVKD----IPATLKFFHSLLGTN-AKMLIIVVSG 163 (280)
T ss_dssp EECSCHHHHHHHHTTSSSCCCEEEEEEESCG----GGCSC----HHHHHHHHHHTEEEE-EEEEEEEECT
T ss_pred chhhhhhhhcchhcccCCCCceeEEEEccce----ecCCC----HHHHHHHHHhhCCCC-CEEEEEEecC
Confidence 344443321 3456799999994321 11123 346777899999999 9988876643
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=2.1e-09 Score=101.54 Aligned_cols=130 Identities=14% Similarity=0.142 Sum_probs=83.9
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCccc----------------------
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNREL---------------------- 366 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~---------------------- 366 (494)
..+|.+|||+|||+|.+++.++..+ ...|+|+|+++.+++.|++++...+.......
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 127 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence 4567899999999999877666542 34799999999999999999986543110000
Q ss_pred --ce-ee----eeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec--------
Q psy19 367 --KV-SP----LVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS-------- 431 (494)
Q Consensus 367 --~i-~~----~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~-------- 431 (494)
.+ .. ...+....++..++||+|++.-= +.......+-+..+++++.++|||| |.+++...
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~----l~~~~~~~~~~~~~l~~i~~~LkpG-G~li~~~~~~~~~~~~ 202 (257)
T d2a14a1 128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLA----MECACCSLDAYRAALCNLASLLKPG-GHLVTTVTLRLPSYMV 202 (257)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESC----HHHHCSSHHHHHHHHHHHHTTEEEE-EEEEEEEESSCCEEEE
T ss_pred hhhhhcccccccccccccccccCCcccEEeehhh----HHHhcccHHHHHHHHHHHHhccCCC-cEEEEEEeccccccee
Confidence 00 00 11122222455678999998321 1000112344678889999999999 98887542
Q ss_pred ----------CHHHHHHHHHhcc
Q psy19 432 ----------DRKHLIQALHITS 444 (494)
Q Consensus 432 ----------~~~~l~~~l~~~~ 444 (494)
....+.+.+...|
T Consensus 203 ~~~~~~~~~~~~~~~~~~l~~aG 225 (257)
T d2a14a1 203 GKREFSCVALEKGEVEQAVLDAG 225 (257)
T ss_dssp TTEEEECCCCCHHHHHHHHHHTT
T ss_pred ccccccccCCCHHHHHHHHHHCC
Confidence 3455677777766
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.82 E-value=5.6e-09 Score=99.10 Aligned_cols=94 Identities=15% Similarity=0.157 Sum_probs=80.3
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
..++++..++..++..+++.||++|||+|.+...++.. +..++++|+|+.+++.++++... ..++.++++|
T Consensus 5 ~d~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~--~~~v~avE~D~~l~~~l~~~~~~-------~~n~~i~~~D 75 (235)
T d1qama_ 5 TSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVD-------HDNFQVLNKD 75 (235)
T ss_dssp CCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTT-------CCSEEEECCC
T ss_pred CCHHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC--cCceEEEeeccchHHHHHHHhhc-------ccchhhhhhh
Confidence 46788899999999999999999999999999998877 57899999999999999987652 2357899999
Q ss_pred cccccCCCCCeeEEEEcCCCccc
Q psy19 375 VRQLCFKPACVDGIVTDLPFGKR 397 (494)
Q Consensus 375 a~~l~~~~~~~D~IVtNPPYG~r 397 (494)
+.+++++......||.|.||...
T Consensus 76 ~l~~~~~~~~~~~vv~NLPYnIs 98 (235)
T d1qama_ 76 ILQFKFPKNQSYKIFGNIPYNIS 98 (235)
T ss_dssp GGGCCCCSSCCCEEEEECCGGGH
T ss_pred hhhccccccccceeeeeehhhhh
Confidence 99987665555679999999854
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.76 E-value=2.2e-08 Score=101.13 Aligned_cols=152 Identities=18% Similarity=0.180 Sum_probs=100.3
Q ss_pred EEecCcceecccccccccccccccccccc-cchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeC
Q psy19 265 QIRYNEAYVGLPVTQTSLHRRNIVEFNIT-TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDI 343 (494)
Q Consensus 265 ~l~~~~~~l~l~lsg~sL~~Rgy~~~~~a-~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Di 343 (494)
.+.++.+.+.++-.... . ..-.|+.|. -++-.++-.++... .+.+|||+|||||..+|.+|...+...|++.|+
T Consensus 3 ~i~EG~~~i~vp~~~~~-~-~~~vFYNp~q~~NRDlsvl~~~~~---~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDi 77 (375)
T d2dula1 3 EVQEGKAKILIPKAESI-Y-DSPVFYNPRMALNRDIVVVLLNIL---NPKIVLDALSATGIRGIRFALETPAEEVWLNDI 77 (375)
T ss_dssp EEEETTEEEEEC----------CCCCCGGGHHHHHHHHHHHHHH---CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEES
T ss_pred EEEeCcEEEEecCCCCC-C-CCCcccCHHHhhhhHHHHHHHHHh---CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecC
Confidence 45566666655322110 0 111244443 24445555555555 456899999999999998887655568999999
Q ss_pred CHHHHHHHHHHHHhccCCCCc----------ccceeeeeeccccccC-CCCCeeEEEEcCCCccccCCccchHHHHHHHH
Q psy19 344 NEKLVLKTQANVLHNSGNLNR----------ELKVSPLVCNVRQLCF-KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFL 412 (494)
Q Consensus 344 d~~al~~Ar~Nl~~~g~~~~~----------~~~i~~~~~Da~~l~~-~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL 412 (494)
|+.+++.+++|++.|++.... ...+.+.+.|+..+.. ....||+|..|| ||... .||
T Consensus 78 s~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~~~~~fDvIDiDP-fGs~~-----------pfl 145 (375)
T d2dula1 78 SEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDLDP-FGSPM-----------EFL 145 (375)
T ss_dssp CHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHSTTCEEEEEECC-SSCCH-----------HHH
T ss_pred CHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHhhcCcCCcccCCC-CCCcH-----------HHH
Confidence 999999999999998753210 1235566777765532 235799999996 77431 467
Q ss_pred HHHhhcccCCCcEEEEEecCHH
Q psy19 413 IEIGKIVRPQIGRAILLTSDRK 434 (494)
Q Consensus 413 ~~l~rvLkpg~G~lvllt~~~~ 434 (494)
..+.+.++.| |.+.+-+.|..
T Consensus 146 dsAi~a~~~~-Gll~vTaTD~a 166 (375)
T d2dula1 146 DTALRSAKRR-GILGVTATDGA 166 (375)
T ss_dssp HHHHHHEEEE-EEEEEEECCHH
T ss_pred HHHHHHhccC-CEEEEEecCch
Confidence 7888889988 88877766654
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=7.5e-08 Score=94.04 Aligned_cols=141 Identities=13% Similarity=0.019 Sum_probs=96.5
Q ss_pred cccccccccc-ccccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHH-hcCCCCeEEEEeCCHHHHHHHHHHHH
Q psy19 279 QTSLHRRNIV-EFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECS-LSYPHTFFVCGDINEKLVLKTQANVL 356 (494)
Q Consensus 279 g~sL~~Rgy~-~~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA-~~~~~~~v~G~Did~~al~~Ar~Nl~ 356 (494)
..++++.|+. ....+++- .+.+..+.+|+.|||.|||.|+=.+.+| ++.....|+++|+++.-++..+.|++
T Consensus 67 ~~~~~~~G~~~~QD~sS~l------~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~ 140 (293)
T d2b9ea1 67 EHPLYRAGHLILQDRASCL------PAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLA 140 (293)
T ss_dssp TSHHHHTTSEEECCTGGGH------HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHH
T ss_pred cChHHhCcEEEEcCCcccc------cccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHH
Confidence 3345666663 23344432 2234578899999999999998665544 44556789999999999999999999
Q ss_pred hccCCCCcccceeeeeeccccccCCC---CCeeEEEEcCCC---ccccC----------Cc---cchHHHHHHHHHHHhh
Q psy19 357 HNSGNLNRELKVSPLVCNVRQLCFKP---ACVDGIVTDLPF---GKRVG----------SK---SNNFLLYRLFLIEIGK 417 (494)
Q Consensus 357 ~~g~~~~~~~~i~~~~~Da~~l~~~~---~~~D~IVtNPPY---G~r~~----------~~---~~~~~ly~~fL~~l~r 417 (494)
..|+ ..+.+...|+..+.... +.||.|+.|||= |..-. .. ..+..+...++..+..
T Consensus 141 r~g~-----~~~~~~~~d~~~~~~~~~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~~ 215 (293)
T d2b9ea1 141 RAGV-----SCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALT 215 (293)
T ss_dssp HTTC-----CSEEEEECCGGGSCTTCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTT
T ss_pred hcCc-----cceeeeehhhhhhcccccccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhhh
Confidence 9876 24678888988774322 579999999993 21100 00 1234455567777764
Q ss_pred cccCCCcEEEEEecC
Q psy19 418 IVRPQIGRAILLTSD 432 (494)
Q Consensus 418 vLkpg~G~lvllt~~ 432 (494)
|+|| |+++..|+.
T Consensus 216 -l~~g-G~lvYsTCS 228 (293)
T d2b9ea1 216 -FPSL-QRLVYSTCS 228 (293)
T ss_dssp -CTTC-CEEEEEESC
T ss_pred -cccc-cEEEEeecc
Confidence 7898 999998883
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.70 E-value=9.1e-08 Score=94.31 Aligned_cols=143 Identities=16% Similarity=0.097 Sum_probs=102.3
Q ss_pred ccccccccccc-ccccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHh-cCCCCeEEEEeCCHHHHHHHHHHH
Q psy19 278 TQTSLHRRNIV-EFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL-SYPHTFFVCGDINEKLVLKTQANV 355 (494)
Q Consensus 278 sg~sL~~Rgy~-~~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~-~~~~~~v~G~Did~~al~~Ar~Nl 355 (494)
+..+.++.|+. ....+ +...+.+..+++|+.|||.|||.|+=...++. +.....+++.|+++.-+...+.|+
T Consensus 88 ~~~~~~~~G~~~vQD~a------S~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~ 161 (313)
T d1ixka_ 88 TSTPEFLTGLIYIQEAS------SMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNL 161 (313)
T ss_dssp GGSHHHHTTSEEECCHH------HHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHH
T ss_pred ccCHhhhhceEEEeccc------ccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHH
Confidence 44456666763 22222 22333455789999999999999986554443 334578999999999999999999
Q ss_pred HhccCCCCcccceeeeeeccccccCCCCCeeEEEEcCCC-ccccC----------Cc---cchHHHHHHHHHHHhhcccC
Q psy19 356 LHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPF-GKRVG----------SK---SNNFLLYRLFLIEIGKIVRP 421 (494)
Q Consensus 356 ~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPPY-G~r~~----------~~---~~~~~ly~~fL~~l~rvLkp 421 (494)
+..|+ ..+.+...|...++.....||.|+.|||= |...- .. ..+..+-.++|..+.+.|||
T Consensus 162 ~r~~~-----~~i~~~~~d~~~~~~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~ 236 (313)
T d1ixka_ 162 SRLGV-----LNVILFHSSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP 236 (313)
T ss_dssp HHHTC-----CSEEEESSCGGGGGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred HHHHh-----hccccccccccccccccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCC
Confidence 98875 23456777888776555789999999993 32110 00 12456677899999999999
Q ss_pred CCcEEEEEecC
Q psy19 422 QIGRAILLTSD 432 (494)
Q Consensus 422 g~G~lvllt~~ 432 (494)
| |+++..|+.
T Consensus 237 g-G~lVYsTCS 246 (313)
T d1ixka_ 237 G-GILVYSTCS 246 (313)
T ss_dssp E-EEEEEEESC
T ss_pred C-cEEEEeecc
Confidence 9 999998883
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=1.7e-08 Score=96.75 Aligned_cols=116 Identities=18% Similarity=0.192 Sum_probs=75.4
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcc----------------------
Q psy19 308 SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRE---------------------- 365 (494)
Q Consensus 308 ~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~---------------------- 365 (494)
+...|.+|||+|||+|.+.+..+..+ ...|+|+|+++.|++.|++++..........
T Consensus 51 g~~~g~~vLDiGcG~g~~~~~~~~~~-~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 129 (263)
T d2g72a1 51 GEVSGRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ 129 (263)
T ss_dssp SCSCCSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred CCCCCcEEEEeccCCCHHHHHHhccc-CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHH
Confidence 45678899999999998875545443 3589999999999999999886433211100
Q ss_pred ---cceeeeeeccccc------cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 366 ---LKVSPLVCNVRQL------CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 366 ---~~i~~~~~Da~~l------~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
....+..+|+..- +...++||+|++-- - +.......+-|..+++.+.++|||| |.+++.
T Consensus 130 ~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~--~--l~~i~~~~~~~~~~l~~~~~~LkPG-G~li~~ 197 (263)
T d2g72a1 130 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAF--C--LEAVSPDLASFQRALDHITTLLRPG-GHLLLI 197 (263)
T ss_dssp HHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEES--C--HHHHCSSHHHHHHHHHHHHTTEEEE-EEEEEE
T ss_pred hhhhhhccccccccCCCccccCCcCcCccCeeeeHH--H--HHHHccCHHHHHHHHHHHHHHcCCC-CEEEEe
Confidence 0012334455432 22345799999831 0 1000011234788999999999999 988774
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.62 E-value=8.4e-08 Score=93.27 Aligned_cols=122 Identities=17% Similarity=0.091 Sum_probs=90.6
Q ss_pred HHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-CCCC
Q psy19 305 RLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-FKPA 383 (494)
Q Consensus 305 ~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~~~~ 383 (494)
.+..+++|..|||.|+|.|+=.+.+|.......|+++|+++.-+...+.|++..|+. .+.+...|..... ...+
T Consensus 96 ~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~-----~~~~~~~~~~~~~~~~~~ 170 (284)
T d1sqga2 96 TWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK-----ATVKQGDGRYPSQWCGEQ 170 (284)
T ss_dssp HHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC-----CEEEECCTTCTHHHHTTC
T ss_pred cccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccc-----ceeeeccccccchhcccc
Confidence 345788999999999999988877776655678999999999999999999998762 1233334443221 2236
Q ss_pred CeeEEEEcCCC-cccc-CC------------ccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 384 CVDGIVTDLPF-GKRV-GS------------KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 384 ~~D~IVtNPPY-G~r~-~~------------~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
.||.|+.|+|= |... .. ...+..+-.++|..+.++|+|| |+++..|+.
T Consensus 171 ~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~g-G~lvYsTCS 232 (284)
T d1sqga2 171 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTG-GTLVYATCS 232 (284)
T ss_dssp CEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEE-EEEEEEESC
T ss_pred cccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCC-ceEEEeeec
Confidence 89999999993 2211 00 0134566778999999999999 999998883
|
| >d2dira1 d.308.1.3 (A:8-92) THUMP domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: THUMP domain superfamily: THUMP domain-like family: Minimal THUMP domain: THUMP domain-containing protein 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=4.7e-08 Score=78.12 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=54.2
Q ss_pred eEEEEEEEEecCcccChHHHHHHHHHHHHhhc-CCCCCCCCCCEEEEEEEecCcceecc
Q psy19 218 LKFRVTCNRVGKHTVTSMESERAFGGKLNDTY-FWLVDLDDYDIDINLQIRYNEAYVGL 275 (494)
Q Consensus 218 ~tFrV~~~~~g~~~~~s~~~~~~v~~aI~d~~-~~~vdl~~pdi~i~v~l~~~~~~l~l 275 (494)
.||+|.++|.+++.|+|+++.+.+|++|.+.+ +++|||++||++|.|.+.++.|.+|+
T Consensus 25 ~TF~V~~krr~~~~l~s~ev~~~vg~~v~~~~~~~~VdL~~Pd~~I~Vev~~~~~~iSv 83 (85)
T d2dira1 25 GTFQIVYKSRNNSHVNREEVIRELAGIVCTLNSENKVDLTNPQYTVVVEIIKAVCCLSV 83 (85)
T ss_dssp CEEEEEEECSSCCSSCHHHHHHHHHHHHHHHCTTCEECSSSCSEEEEEEEETTEEEEEE
T ss_pred ceEEEEEEeCCCCCCCHHHHHHHHHHHHHhhCCCceeeccCCCEEEEEEEeCCEEEEEE
Confidence 59999999999889999999999999998876 68999999999999999999999875
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.58 E-value=3.2e-09 Score=101.50 Aligned_cols=94 Identities=11% Similarity=0.141 Sum_probs=79.1
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
.++.++..++..+...+++.||++|||+|++...++.. +..++++|+|+.+++.++.+... ..++.++++|
T Consensus 13 ~d~~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~~-------~~n~~ii~~D 83 (245)
T d1yuba_ 13 TSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKL-------NTRVTLIHQD 83 (245)
T ss_dssp CCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTT-------CSEEEECCSC
T ss_pred CCHHHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhhh-------ccchhhhhhh
Confidence 45667778889999999999999999999999988887 57899999999988877655431 2467899999
Q ss_pred cccccCCCCCeeEEEEcCCCccc
Q psy19 375 VRQLCFKPACVDGIVTDLPFGKR 397 (494)
Q Consensus 375 a~~l~~~~~~~D~IVtNPPYG~r 397 (494)
+.+++++...++.||+|.||...
T Consensus 84 ~l~~~~~~~~~~~vv~NLPY~Is 106 (245)
T d1yuba_ 84 ILQFQFPNKQRYKIVGNIPYHLS 106 (245)
T ss_dssp CTTTTCCCSSEEEEEEECCSSSC
T ss_pred hhccccccceeeeEeeeeehhhh
Confidence 99998877788899999999754
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=1.8e-07 Score=90.63 Aligned_cols=94 Identities=23% Similarity=0.288 Sum_probs=80.7
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
.+++++..++..++..+++.||++|+|.|++..+++.. +..++++|+|+.++...++...... ...++.++++|
T Consensus 5 ~d~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~--~~~v~aiE~D~~l~~~L~~~~~~~~----~~~~~~~i~~D 78 (278)
T d1zq9a1 5 KNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTP----VASKLQVLVGD 78 (278)
T ss_dssp CCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTST----TGGGEEEEESC
T ss_pred CCHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc--CCcEEEEEEccchhHHHHHHHhhhc----cccchhhhHHH
Confidence 46788999999999999999999999999999998887 5799999999999999999887542 24567899999
Q ss_pred cccccCCCCCeeEEEEcCCCcc
Q psy19 375 VRQLCFKPACVDGIVTDLPFGK 396 (494)
Q Consensus 375 a~~l~~~~~~~D~IVtNPPYG~ 396 (494)
+...+++ .+..||.|+||..
T Consensus 79 ~l~~~~~--~~~~vV~NLPY~I 98 (278)
T d1zq9a1 79 VLKTDLP--FFDTCVANLPYQI 98 (278)
T ss_dssp TTTSCCC--CCSEEEEECCGGG
T ss_pred Hhhhhhh--hhhhhhcchHHHH
Confidence 9987654 4678999999974
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=98.53 E-value=8e-08 Score=90.18 Aligned_cols=65 Identities=23% Similarity=0.277 Sum_probs=56.3
Q ss_pred ccccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHH
Q psy19 289 EFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVL 356 (494)
Q Consensus 289 ~~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~ 356 (494)
..+|++.+..|+..++.+.. .+|+.||||||||||.+++|... +.+.+|+|+++..++.|++.+.
T Consensus 191 ~~Hp~~kP~~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~~--~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 191 LTHITPKPRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp ----CCCCHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHc
Confidence 34799999999999999886 57899999999999999988887 6899999999999999999875
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.52 E-value=3.1e-07 Score=85.52 Aligned_cols=120 Identities=16% Similarity=0.073 Sum_probs=86.5
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
+.+.-.+.|..++.......||++|||+|..++.+|... ++.+++++|+++.+++.|+.|++.+|+ .++++++.+
T Consensus 40 i~~~~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl----~~~i~l~~G 115 (214)
T d2cl5a1 40 VGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGL----QDKVTILNG 115 (214)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTC----GGGEEEEES
T ss_pred cCHHHHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCC----Cccceeeec
Confidence 455555555555544445699999999999998888764 468999999999999999999998875 567899999
Q ss_pred ccccc-c-----CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 374 NVRQL-C-----FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 374 Da~~l-~-----~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
|+.+. + ...+.||+|..|- .+... ..+ ..+.+..++|+|| |.+++
T Consensus 116 d~~e~l~~l~~~~~~~~~D~ifiD~-------~~~~~-~~~-~~l~~~~~lLkpG-GvIv~ 166 (214)
T d2cl5a1 116 ASQDLIPQLKKKYDVDTLDMVFLDH-------WKDRY-LPD-TLLLEKCGLLRKG-TVLLA 166 (214)
T ss_dssp CHHHHGGGHHHHSCCCCEEEEEECS-------CGGGH-HHH-HHHHHHTTCEEEE-EEEEE
T ss_pred cccccccchhhcccccccceeeecc-------ccccc-ccH-HHHHHHhCccCCC-cEEEE
Confidence 98765 2 2335799999972 11111 111 1244577899998 86553
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=3.7e-07 Score=85.33 Aligned_cols=118 Identities=17% Similarity=0.096 Sum_probs=91.7
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
+.+..+..|..++......+||++|||+|.-++..|...+ +.+++++|+++...+.|+.|++.+|+ ..++++..+
T Consensus 43 i~~~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~----~~~i~~~~G 118 (219)
T d2avda1 43 MTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA----EHKIDLRLK 118 (219)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC----TTTEEEEES
T ss_pred cCHHHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCc----cceEEEEEe
Confidence 4556677777777666667999999999999888887644 68999999999999999999998875 567899999
Q ss_pred ccccc-c-----CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 374 NVRQL-C-----FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 374 Da~~l-~-----~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
|+.+. + ...++||+|..|=- +.. |...++.+.++|+|| |.+++
T Consensus 119 da~e~l~~~~~~~~~~~fD~ifiD~d-------k~~----y~~~~~~~~~lL~~G-Gvii~ 167 (219)
T d2avda1 119 PALETLDELLAAGEAGTFDVAVVDAD-------KEN----CSAYYERCLQLLRPG-GILAV 167 (219)
T ss_dssp CHHHHHHHHHHTTCTTCEEEEEECSC-------STT----HHHHHHHHHHHEEEE-EEEEE
T ss_pred ehhhcchhhhhhcccCCccEEEEeCC-------HHH----HHHHHHHHHHHhcCC-cEEEE
Confidence 98664 1 12468999999731 122 555666788999998 87665
|
| >d1vbka2 d.308.1.1 (A:1-175) Hypothetical protein PH1313, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: THUMP domain superfamily: THUMP domain-like family: THUMP domain domain: Hypothetical protein PH1313, N-terminal domain species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.49 E-value=9.4e-08 Score=86.46 Aligned_cols=60 Identities=32% Similarity=0.468 Sum_probs=55.0
Q ss_pred eEEEEEEEEec-CcccChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEEEecCcceecccc
Q psy19 218 LKFRVTCNRVG-KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPV 277 (494)
Q Consensus 218 ~tFrV~~~~~g-~~~~~s~~~~~~v~~aI~d~~~~~vdl~~pdi~i~v~l~~~~~~l~l~l 277 (494)
.||+|+|+|.+ .+.|+|+++++.+|++|.+.++++|||+|||++|.|.+.++.++++...
T Consensus 107 ~tF~V~~kR~~k~f~~tS~ei~~~vG~~i~~~~~~~VdL~nPd~~i~vEI~~~~~yv~~~~ 167 (175)
T d1vbka2 107 PKFRVTARRITKEFPLDSLEIQAKVGEYILNNENCEVDLKNYDIEIGIEIMQGKAYIYTEK 167 (175)
T ss_dssp CEEEEEEEESSSCSSSCHHHHHHHHHHHHHHHSSCEECSSSCSEEEEEEEETTEEEEESCC
T ss_pred CcEEEEEEecCCCCCCChHHHHHHHHHHHhhcCCCeeeccCCCEEEEEEEEeCcEEEEEee
Confidence 49999999999 4679999999999999988899999999999999999999999987543
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.47 E-value=2.1e-07 Score=84.63 Aligned_cols=121 Identities=20% Similarity=0.267 Sum_probs=87.8
Q ss_pred HHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-
Q psy19 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC- 379 (494)
Q Consensus 301 a~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~- 379 (494)
..++....+++|..++|..||.|+...+.... +.+|+|+|+|+.++..|+... ..++.+++.++.++.
T Consensus 8 ~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~---------~~~~~~~~~~f~~~~~ 76 (182)
T d1wg8a2 8 QEALDLLAVRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLH---------LPGLTVVQGNFRHLKR 76 (182)
T ss_dssp HHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTC---------CTTEEEEESCGGGHHH
T ss_pred HHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhcc---------ccceeEeehHHHHHHH
Confidence 34455567889999999999999998877765 679999999999999887521 234678888776652
Q ss_pred ----CCCCCeeEEEEcCCCccc-cCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 380 ----FKPACVDGIVTDLPFGKR-VGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 380 ----~~~~~~D~IVtNPPYG~r-~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
...+.+|.|+.|..+... +.............|.....+|++| |++++++-+.
T Consensus 77 ~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~g-g~~~ii~fhs 134 (182)
T d1wg8a2 77 HLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPG-GRLVVIAFHS 134 (182)
T ss_dssp HHHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEE-EEEEEEECSH
T ss_pred HHHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCC-CeEEEEeccc
Confidence 233679999999854211 1111122233445888899999999 9999988764
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.47 E-value=1.9e-07 Score=91.91 Aligned_cols=113 Identities=18% Similarity=0.092 Sum_probs=83.5
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc-cCCCCCeeEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-CFKPACVDGIV 389 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-~~~~~~~D~IV 389 (494)
...+||.+|.|.|+++.+++...+...|.++|||+..++.|++.+...+....-..+++++.+|++.. .-.+.+||+||
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEE
Confidence 34689999999999999988776778999999999999999998754321111235788999999886 22346899999
Q ss_pred EcCC--CccccCCccchHHHH-HHHHHHHhhcccCCCcEEEE
Q psy19 390 TDLP--FGKRVGSKSNNFLLY-RLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 390 tNPP--YG~r~~~~~~~~~ly-~~fL~~l~rvLkpg~G~lvl 428 (494)
.|++ ++.... ...|| ..|++.+.+.|+|| |.+++
T Consensus 157 ~D~~dp~~~~~~----~~~L~t~eF~~~~~~~L~p~-Gvlv~ 193 (312)
T d1uira_ 157 IDLTDPVGEDNP----ARLLYTVEFYRLVKAHLNPG-GVMGM 193 (312)
T ss_dssp EECCCCBSTTCG----GGGGSSHHHHHHHHHTEEEE-EEEEE
T ss_pred EeCCCcccccch----hhhhhhHHHHHHHHHhcCCC-ceEEE
Confidence 9874 553211 11122 35667899999999 98776
|
| >d2c5sa2 d.308.1.1 (A:3-173) Thiamine biosynthesis protein ThiI, N-terminal domain {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: THUMP domain superfamily: THUMP domain-like family: THUMP domain domain: Thiamine biosynthesis protein ThiI, N-terminal domain species: Bacillus anthracis [TaxId: 1392]
Probab=98.42 E-value=1.6e-07 Score=84.66 Aligned_cols=59 Identities=25% Similarity=0.419 Sum_probs=54.1
Q ss_pred eEEEEEEEEecCc-ccChHHHHHHHHHHHHhhc-CCCCCCCCCCEEEEEEEecCcceeccc
Q psy19 218 LKFRVTCNRVGKH-TVTSMESERAFGGKLNDTY-FWLVDLDDYDIDINLQIRYNEAYVGLP 276 (494)
Q Consensus 218 ~tFrV~~~~~g~~-~~~s~~~~~~v~~aI~d~~-~~~vdl~~pdi~i~v~l~~~~~~l~l~ 276 (494)
.||+|+|+|.++| .++|+++++.+|++|.+.+ +++|||+|||++|+|.+.++.++++..
T Consensus 102 ~tF~Vr~kR~~k~f~~tS~ei~~~lG~~il~~~~~~kVdL~nPd~~i~veI~~~~ayi~~~ 162 (171)
T d2c5sa2 102 KTFKITVHRSYKHFPMRTMELLPEIGGHILENTEDITVDVHNPDVNVRVEIRSGYSYIMCD 162 (171)
T ss_dssp CEEEEEEEECCTTCSSCHHHHHHHHHHHHHTTSSSCEECSSSCSEEEEEEECSSEEEEEEE
T ss_pred ceEEEEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCeeeccCCCEEEEEEEEcCeEEEEEE
Confidence 4999999999987 7999999999999998877 579999999999999999999988654
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=98.37 E-value=2.5e-07 Score=87.83 Aligned_cols=67 Identities=19% Similarity=0.153 Sum_probs=60.6
Q ss_pred ccccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhc
Q psy19 289 EFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN 358 (494)
Q Consensus 289 ~~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~ 358 (494)
..+|++.+..|...++.... .+|+.||||||||||.+++|... +.+.+|+|+++..++.|++.+...
T Consensus 186 ~~Hp~~kP~~L~~~~I~~~s-~~gdiVLDpF~GSGTT~~Aa~~l--gR~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 186 VGHPTQKPAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp CSCTTCCCHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred ccCccccchhHHHHHHHhhc-CCCCEEEecCCCCcHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 35799999999999999875 58999999999999999999888 679999999999999999999854
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=98.37 E-value=1.8e-07 Score=90.27 Aligned_cols=65 Identities=12% Similarity=0.218 Sum_probs=58.6
Q ss_pred cccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHh
Q psy19 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH 357 (494)
Q Consensus 290 ~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~ 357 (494)
.+|++.++.|...++.++.. +|+.||||||||||.+++|... +...+|+|+++++++.|+..+..
T Consensus 230 ~hpt~kP~~L~~rlI~~~s~-~gdiVlDpF~GSGTT~~AA~~l--gR~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 230 AHPARFPAKLPEFFIRMLTE-PDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp CCSSCCCTHHHHHHHHHHCC-TTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGSC
T ss_pred cCCCcCchHHHHHhhhhccc-CCCEEEecCCCCcHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHHHh
Confidence 47999999999999998864 7899999999999999998887 78999999999999999887664
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.35 E-value=4.1e-06 Score=80.69 Aligned_cols=113 Identities=12% Similarity=0.041 Sum_probs=80.7
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccC-----CCCcccceeeeeeccccccCCCCCe
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSG-----NLNRELKVSPLVCNVRQLCFKPACV 385 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~-----~~~~~~~i~~~~~Da~~l~~~~~~~ 385 (494)
....||-+|+|.|+.+.+++. ++..+|.++|||+.+++.|++-...... ......+++++.+|+...-..+++|
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y 150 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 150 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence 446899999999999988765 5667899999999999999975532210 0012357899999998762234689
Q ss_pred eEEEEcCCCccccCCccchHHHH-HHHHHHHhhcccCCCcEEEEEe
Q psy19 386 DGIVTDLPFGKRVGSKSNNFLLY-RLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 386 D~IVtNPPYG~r~~~~~~~~~ly-~~fL~~l~rvLkpg~G~lvllt 430 (494)
|+||.|++-+... . ..|| ..|++.+.+.|+|+ |.+++=+
T Consensus 151 DvIi~D~~~~~~~--~---~~L~t~eF~~~~~~~L~~~-Gv~v~q~ 190 (276)
T d1mjfa_ 151 DVIIADSTDPVGP--A---KVLFSEEFYRYVYDALNNP-GIYVTQA 190 (276)
T ss_dssp EEEEEECCCCC----------TTSHHHHHHHHHHEEEE-EEEEEEE
T ss_pred CEEEEeCCCCCCC--c---ccccCHHHHHhhHhhcCCC-ceEEEec
Confidence 9999999865322 1 1222 25777899999999 9877643
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.29 E-value=9.5e-06 Score=78.00 Aligned_cols=115 Identities=16% Similarity=0.003 Sum_probs=83.9
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc-cCCCCCeeEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-CFKPACVDGIV 389 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-~~~~~~~D~IV 389 (494)
....||-+|-|.|+++-+++...+..+|.++|||+..++.|++....+... --..+++++.+|+... .-...+||+||
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~-~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGK-LDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTT-TTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhccc-ccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 446899999999999999887666679999999999999999977543211 1235788999998875 22346899999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
.|+|-.......---. .|++.+.+.|+|+ |.++.=++
T Consensus 154 ~D~~~p~~~~~~L~t~----eFy~~~~~~L~~~-Gv~v~q~~ 190 (274)
T d1iy9a_ 154 VDSTEPVGPAVNLFTK----GFYAGIAKALKED-GIFVAQTD 190 (274)
T ss_dssp ESCSSCCSCCCCCSTT----HHHHHHHHHEEEE-EEEEEECC
T ss_pred EcCCCCCCcchhhccH----HHHHHHHhhcCCC-ceEEEecC
Confidence 9987443222111112 4555799999999 98777544
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.28 E-value=5.2e-07 Score=86.09 Aligned_cols=94 Identities=11% Similarity=0.120 Sum_probs=75.8
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
..++++..|+..+...+++.||++|||+|.+.-.++.. +.+++++|+|+.+++..+..... ..++.++++|
T Consensus 5 ~d~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~-------~~~~~ii~~D 75 (252)
T d1qyra_ 5 NDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGER--LDQLTVIELDRDLAARLQTHPFL-------GPKLTIYQQD 75 (252)
T ss_dssp CCHHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT--CSCEEEECCCHHHHHHHHTCTTT-------GGGEEEECSC
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc--CCceEEEEeccchhHHHHHHhhh-------ccchhHHhhh
Confidence 45788899999999999999999999999999988876 57899999999999988764321 2467899999
Q ss_pred cccccCCC-----CCeeEEEEcCCCccc
Q psy19 375 VRQLCFKP-----ACVDGIVTDLPFGKR 397 (494)
Q Consensus 375 a~~l~~~~-----~~~D~IVtNPPYG~r 397 (494)
+.++++.. +..-.||.|+||...
T Consensus 76 ~l~~~~~~~~~~~~~~~~vvgNlPY~Is 103 (252)
T d1qyra_ 76 AMTFNFGELAEKMGQPLRVFGNLPYNIS 103 (252)
T ss_dssp GGGCCHHHHHHHHTSCEEEEEECCTTTH
T ss_pred hhhhcccccccccCCCeEEEecchHHHH
Confidence 98874321 234489999999753
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.28 E-value=1.2e-06 Score=82.26 Aligned_cols=117 Identities=15% Similarity=0.048 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 296 KPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 296 ~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
.+..++.|-.++......+||++|||+|.-++..|...+ +++++.+|+++...+.|++|+..+|+ .+++.++.+|
T Consensus 44 ~~~~g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~----~~~i~~~~g~ 119 (227)
T d1susa1 44 SADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV----DHKIDFREGP 119 (227)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC----GGGEEEEESC
T ss_pred CHHHHHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhcc----ccceeeeehH
Confidence 344455555555544556999999999988888876554 68999999999999999999998875 5688999999
Q ss_pred cccc-c-C-----CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 375 VRQL-C-F-----KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 375 a~~l-~-~-----~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
+.+. + + ..++||+|+.|= .+.. |...++.+.++|+|| |.+++
T Consensus 120 a~~~L~~l~~~~~~~~~fD~iFiDa-------~k~~----y~~~~e~~~~ll~~g-Giii~ 168 (227)
T d1susa1 120 ALPVLDEMIKDEKNHGSYDFIFVDA-------DKDN----YLNYHKRLIDLVKVG-GVIGY 168 (227)
T ss_dssp HHHHHHHHHHCGGGTTCBSEEEECS-------CSTT----HHHHHHHHHHHBCTT-CCEEE
T ss_pred HHHHHHHHHhccccCCceeEEEecc-------chhh----hHHHHHHHHhhcCCC-cEEEE
Confidence 8765 2 1 235899999972 1222 667777888999999 87665
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=7e-06 Score=79.39 Aligned_cols=114 Identities=13% Similarity=0.000 Sum_probs=81.3
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc-cCCCCCeeEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-CFKPACVDGIV 389 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-~~~~~~~D~IV 389 (494)
...+||-+|-|.|+++-++....+..++.++|||+.+++.|++-+..+.. ..-..+++++.+|++.. .-..++||+||
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~-~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAI-GYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHG-GGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhcc-ccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 44689999999999999988766678999999999999999987643211 01235789999998876 22346899999
Q ss_pred EcCCCccccCCccchHHHHH-HHHHHHhhcccCCCcEEEEEec
Q psy19 390 TDLPFGKRVGSKSNNFLLYR-LFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~-~fL~~l~rvLkpg~G~lvllt~ 431 (494)
.|++-.... ...||. .|++.+.+.|+|+ |.+++=+.
T Consensus 157 ~D~~~p~~~-----~~~L~t~eF~~~~~~~L~~~-Gi~v~q~~ 193 (285)
T d2o07a1 157 TDSSDPMGP-----AESLFKESYYQLMKTALKED-GVLCCQGE 193 (285)
T ss_dssp EECC----------------CHHHHHHHHHEEEE-EEEEEEEE
T ss_pred EcCCCCCCc-----ccccccHHHHHHHHHhcCCC-CeEEEecc
Confidence 998643221 123343 5777899999999 98877544
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.25 E-value=1.1e-05 Score=74.35 Aligned_cols=139 Identities=14% Similarity=0.165 Sum_probs=97.1
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt 390 (494)
++..++|+|||.|--++-.|..+|+..++.+|.+.+-+.-.+.-+...++ .++.+++..+.++.. ..+||+|++
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L-----~nv~v~~~R~E~~~~-~~~fD~V~s 138 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL-----ENIEPVQSRVEEFPS-EPPFDGVIS 138 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-----SSEEEEECCTTTSCC-CSCEEEEEC
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC-----cceeeeccchhhhcc-ccccceehh
Confidence 45789999999999999999899999999999999999988888877664 246888888887643 358999988
Q ss_pred cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHhccccceee--eeEEEccCCceEEEEEEe
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCR--KQIKINMSGMKSFVFILN 468 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~~~~l~~~~--~~~~v~~Ggl~~~i~v~~ 468 (494)
|.-. . +..++.-+..+++++ |+++++-+... .+.+......|... ..+.+....-++++++++
T Consensus 139 ------RA~~--~----~~~ll~~~~~~l~~~-g~~~~~KG~~~--~eEl~~~~~~~~~~~~~~~~~p~~~~~R~iv~ik 203 (207)
T d1jsxa_ 139 ------RAFA--S----LNDMVSWCHHLPGEQ-GRFYALKGQMP--EDEIALLPEEYQVESVVKLQVPALDGERHLVVIK 203 (207)
T ss_dssp ------SCSS--S----HHHHHHHHTTSEEEE-EEEEEEESSCC--HHHHHTSCTTEEEEEEEEEECC--CCEEEEEEEE
T ss_pred ------hhhc--C----HHHHHHHHHHhcCCC-cEEEEECCCCH--HHHHHhhhcCCEEEEEEEecCCCCCCcEEEEEEE
Confidence 4322 2 345666788899999 99998877431 12222221124332 333344445566777776
Q ss_pred eC
Q psy19 469 RT 470 (494)
Q Consensus 469 ~~ 470 (494)
..
T Consensus 204 k~ 205 (207)
T d1jsxa_ 204 AN 205 (207)
T ss_dssp EC
T ss_pred ec
Confidence 54
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.18 E-value=1.1e-05 Score=78.34 Aligned_cols=115 Identities=12% Similarity=-0.027 Sum_probs=81.3
Q ss_pred CCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc-cCCCCCeeEEEE
Q psy19 312 GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-CFKPACVDGIVT 390 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-~~~~~~~D~IVt 390 (494)
..+||=+|.|.|+++-+++...+...|.++|||+.+++.|++-+..... .--..+++++.+|+... .-..+.||+||.
T Consensus 90 pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~-~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 168 (295)
T d1inla_ 90 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSC-GFDDPRAEIVIANGAEYVRKFKNEFDVIII 168 (295)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHG-GGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcc-cccCCCcEEEhhhHHHHHhcCCCCCCEEEE
Confidence 4689999999999999988766667899999999999999987654321 01135788999999876 223468999999
Q ss_pred cCCCccccCCccchHHHH-HHHHHHHhhcccCCCcEEEEEecC
Q psy19 391 DLPFGKRVGSKSNNFLLY-RLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly-~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
|++-+.... ...|| ..|++.+.+.|+|+ |.+++=+.+
T Consensus 169 D~~dp~~~~----~~~L~t~efy~~~~~~L~~~-Gi~v~q~~s 206 (295)
T d1inla_ 169 DSTDPTAGQ----GGHLFTEEFYQACYDALKED-GVFSAETED 206 (295)
T ss_dssp EC--------------CCSHHHHHHHHHHEEEE-EEEEEECCC
T ss_pred cCCCCCcCc----hhhhccHHHHHHHHhhcCCC-cEEEEecCC
Confidence 986432111 11122 35666899999999 988775543
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=98.15 E-value=2.1e-06 Score=81.55 Aligned_cols=93 Identities=6% Similarity=-0.071 Sum_probs=71.4
Q ss_pred HHhCCCCC--CEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCC----cccceeeeeeccccc
Q psy19 305 RLASPIPG--DVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLN----RELKVSPLVCNVRQL 378 (494)
Q Consensus 305 ~la~~~~g--~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~----~~~~i~~~~~Da~~l 378 (494)
...+.+.+ .+|||..||.|+.+..+|.. ++.|+++|.+|......+.+++.+..+.. ...+++++++|+.++
T Consensus 80 kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~ 157 (250)
T d2oyra1 80 KAVGIKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA 157 (250)
T ss_dssp HHTTCBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHH
T ss_pred HHhcCCCCCCCEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHH
Confidence 33455444 48999999999999999988 78999999999999998888876543211 134788999998775
Q ss_pred -cCCCCCeeEEEEcCCCccccC
Q psy19 379 -CFKPACVDGIVTDLPFGKRVG 399 (494)
Q Consensus 379 -~~~~~~~D~IVtNPPYG~r~~ 399 (494)
.-....||+|..||||..+..
T Consensus 158 L~~~~~~~DvIYlDPMFp~~~K 179 (250)
T d2oyra1 158 LTDITPRPQVVYLDPMFPHKQK 179 (250)
T ss_dssp STTCSSCCSEEEECCCCCCCCC
T ss_pred HhccCCCCCEEEECCCCccccc
Confidence 222357999999999976643
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.15 E-value=5.6e-06 Score=78.28 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=76.9
Q ss_pred HHHHHHHHHhC-CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccc
Q psy19 298 TIAYNMVRLAS-PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVR 376 (494)
Q Consensus 298 ~lAa~ll~la~-~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~ 376 (494)
..+..++.... +....+|||+|||+|+++++++..+|+.+++..|+ |..+ +..+ ..+++.+..+|++
T Consensus 67 ~~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi-------~~~~----~~~ri~~~~gd~~ 134 (244)
T d1fp1d2 67 TEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVI-------ENAP----PLSGIEHVGGDMF 134 (244)
T ss_dssp HHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-------TTCC----CCTTEEEEECCTT
T ss_pred HHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhh-------hccC----CCCCeEEecCCcc
Confidence 34445555555 56668999999999999999999999999999998 4333 2222 2467899999987
Q ss_pred cccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 377 QLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 377 ~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+ +.+ ..|++++- ++- +.-..+--..+|+.+.+.|+|| |+++++
T Consensus 135 ~-~~p--~~D~~~l~-----~vL-h~~~de~~~~iL~~~~~aL~pg-g~llI~ 177 (244)
T d1fp1d2 135 A-SVP--QGDAMILK-----AVC-HNWSDEKCIEFLSNCHKALSPN-GKVIIV 177 (244)
T ss_dssp T-CCC--CEEEEEEE-----SSG-GGSCHHHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred c-ccc--cceEEEEe-----hhh-hhCCHHHHHHHHHHHHHHcCCC-cEEEEE
Confidence 6 333 35888773 111 1111222446777899999999 998875
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.14 E-value=1.5e-05 Score=77.84 Aligned_cols=114 Identities=13% Similarity=-0.032 Sum_probs=80.7
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc-cCCCCCeeEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-CFKPACVDGIV 389 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-~~~~~~~D~IV 389 (494)
...+||-+|-|.|+++-+++...+..+|.++|||+.+++.|++-+..+.. .--..+++++.+|+... .-...+||+||
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~-~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSC-GFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSG-GGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhcc-ccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 34689999999999999988765557899999999999999987654321 01135788999999876 22346899999
Q ss_pred EcCCCccccCCccchHHHH-HHHHHHHhhcccCCCcEEEEEec
Q psy19 390 TDLPFGKRVGSKSNNFLLY-RLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly-~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
.|++-... . ...|| ..|++.+.+.|+|+ |.++.=+.
T Consensus 185 ~D~~dp~~--~---~~~L~t~eFy~~~~~~L~~~-Gi~v~q~~ 221 (312)
T d2b2ca1 185 TDSSDPVG--P---AESLFGQSYYELLRDALKED-GILSSQGE 221 (312)
T ss_dssp ECCC------------------HHHHHHHHEEEE-EEEEEECC
T ss_pred EcCCCCCC--c---chhhhhHHHHHHHHhhcCCC-cEEEEecC
Confidence 99874321 1 12233 35777899999999 98887554
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.08 E-value=6.3e-05 Score=70.66 Aligned_cols=145 Identities=10% Similarity=0.076 Sum_probs=100.2
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC---CCCeeE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK---PACVDG 387 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~---~~~~D~ 387 (494)
.+.+++|+|+|.|--+|-.|..+|+..++-+|.+.+-+.-.+.-....|+ .++.+++..+..+... .+.||+
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L-----~n~~i~~~R~E~~~~~~~~~~~~D~ 144 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL-----ENTTFCHDRAETFGQRKDVRESYDI 144 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC-----SSEEEEESCHHHHTTCTTTTTCEEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCC-----CCcEEEeehhhhccccccccccceE
Confidence 56789999999999999999889999999999999988887777776654 2356777777665321 258999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH--HHH---HHHHHhccccceeeeeEEEccCCceE
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR--KHL---IQALHITSALWKCRKQIKINMSGMKS 462 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~--~~l---~~~l~~~~~l~~~~~~~~v~~Ggl~~ 462 (494)
|++ |.-. . ...++.-...+++++ |+++++-+.. +.+ .+.+...+..+.....+.+...+-.+
T Consensus 145 v~s------RAva--~----l~~ll~~~~~~l~~~-g~~i~~KG~~~~~El~~a~~~~~~~~~~~~~v~~~~lp~~~~~r 211 (239)
T d1xdza_ 145 VTA------RAVA--R----LSVLSELCLPLVKKN-GLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDR 211 (239)
T ss_dssp EEE------ECCS--C----HHHHHHHHGGGEEEE-EEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEE
T ss_pred EEE------hhhh--C----HHHHHHHHhhhcccC-CEEEEECCCChHHHHHHHHHHHHHcCCEEEEEEEEeCCCCCCCE
Confidence 999 5433 2 345566788999998 9988886642 222 22333333222234445554556667
Q ss_pred EEEEEeeCCCC
Q psy19 463 FVFILNRTADL 473 (494)
Q Consensus 463 ~i~v~~~~~~~ 473 (494)
+++++++....
T Consensus 212 ~lv~i~K~~~~ 222 (239)
T d1xdza_ 212 NIMVIRKIKNT 222 (239)
T ss_dssp EEEEEEECSCC
T ss_pred EEEEEEECCCC
Confidence 88888875544
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.05 E-value=6.7e-05 Score=72.49 Aligned_cols=114 Identities=13% Similarity=0.093 Sum_probs=83.9
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc--cCCCCCeeEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL--CFKPACVDGI 388 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l--~~~~~~~D~I 388 (494)
...+||=+|-|.|+++-+++..++...+.++|||+.+++.|++-...+.. ..-..+++++.+|++.. ....++||+|
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~-~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAI-GYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHG-GGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhc-cccCCCcEEEEccHHHHHhhccccCccEE
Confidence 34689999999999999988776667899999999999999986643221 11245788999998776 2334589999
Q ss_pred EEcCCCccccCCccchHHHH-HHHHHHHhhcccCCCcEEEEEec
Q psy19 389 VTDLPFGKRVGSKSNNFLLY-RLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly-~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
|.|++=.. +.. ..|| ..|++.+.+.|+|+ |.+++=++
T Consensus 159 i~D~~dp~--~~~---~~L~t~eF~~~~~~~L~~~-Gi~v~q~~ 196 (290)
T d1xj5a_ 159 IVDSSDPI--GPA---KELFEKPFFQSVARALRPG-GVVCTQAE 196 (290)
T ss_dssp EECCCCTT--SGG---GGGGSHHHHHHHHHHEEEE-EEEEEECC
T ss_pred EEcCCCCC--Ccc---hhhCCHHHHHHHHHhcCCC-cEEEEecC
Confidence 99987432 111 1223 34777899999999 98887554
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.76 E-value=2.5e-05 Score=70.94 Aligned_cols=111 Identities=14% Similarity=0.047 Sum_probs=64.3
Q ss_pred CCCEEEEEcCCcChHHHHHHhc--------CCCCeEEEEeCCHHHHHHHHHHHHhcc----C--------------CCC-
Q psy19 311 PGDVFLDPMCGGGTIPVECSLS--------YPHTFFVCGDINEKLVLKTQANVLHNS----G--------------NLN- 363 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~--------~~~~~v~G~Did~~al~~Ar~Nl~~~g----~--------------~~~- 363 (494)
+.-+|++.|||||--+..+|+. .....|+|.|+|+.+++.|+...-... + ...
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 4468999999999744333322 113579999999999999985431110 0 000
Q ss_pred -------cccceeeeeeccccc-cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 364 -------RELKVSPLVCNVRQL-CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 364 -------~~~~i~~~~~Da~~l-~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
+...+.+...+.... +.+.+.||+|+| |---..=..+...++++.+.+.|+|| |.+++
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~C------RNVLiYf~~~~~~~vl~~l~~~L~pG-G~L~l 169 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFC------RNVMIYFDKTTQEDILRRFVPLLKPD-GLLFA 169 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEE------CSSGGGSCHHHHHHHHHHHGGGEEEE-EEEEE
T ss_pred eeehHHHHHHHHHHhhhhccccccCCCCCccEEEe------ehhHHhcCHHHHHHHHHHHHHHhCCC-cEEEE
Confidence 001122233333322 122468999999 21111111344567888999999999 86543
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.70 E-value=8.6e-05 Score=69.58 Aligned_cols=109 Identities=12% Similarity=0.007 Sum_probs=72.2
Q ss_pred HHHHHHHHhCC-CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc
Q psy19 299 IAYNMVRLASP-IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ 377 (494)
Q Consensus 299 lAa~ll~la~~-~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~ 377 (494)
.+..++....+ .+..+|||+|||+|.++++++..+|+.++++.|+-+. + ..+ ....++.+..+|+++
T Consensus 68 ~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i-------~~~----~~~~r~~~~~~d~~~ 135 (243)
T d1kyza2 68 TMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-I-------EDA----PSYPGVEHVGGDMFV 135 (243)
T ss_dssp HHHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-T-------TTC----CCCTTEEEEECCTTT
T ss_pred HHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-h-------hhc----ccCCceEEecccccc
Confidence 34455555554 4457899999999999999999999999999999653 1 212 224567889999876
Q ss_pred ccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 378 LCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 378 l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+.+.+ |.++. ..-+... ..+-...+|+.+.+.|+|| |++.++
T Consensus 136 -~~P~a--d~~~l----~~vlh~~--~d~~~~~iL~~~~~al~pg-g~~li~ 177 (243)
T d1kyza2 136 -SIPKA--DAVFM----KWICHDW--SDEHCLKFLKNCYEALPDN-GKVIVA 177 (243)
T ss_dssp -CCCCC--SCEEC----SSSSTTS--CHHHHHHHHHHHHHHCCSS-SCEEEE
T ss_pred -cCCCc--ceEEE----EEEeecC--CHHHHHHHHHHHHHhcCCC-ceEEEE
Confidence 33322 33322 1111111 1233456788899999999 887764
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.59 E-value=0.00012 Score=68.92 Aligned_cols=98 Identities=12% Similarity=0.047 Sum_probs=68.7
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt 390 (494)
...+|+|+|||+|+++++++..+|+.+++..|+ |..++ .++ ..++++++.+|+++- .+ .+|++++
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~-------~~~----~~~rv~~~~gD~f~~-~p--~aD~~~l 144 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVE-------NLS----GSNNLTYVGGDMFTS-IP--NADAVLL 144 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT-------TCC----CBTTEEEEECCTTTC-CC--CCSEEEE
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHH-------hCc----ccCceEEEecCcccC-CC--CCcEEEE
Confidence 446899999999999999999999999999998 44332 222 356789999999873 32 4688877
Q ss_pred cCCCccccCCccchHHHHHHHHHHHhhcccCCC--cEEEEE
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQI--GRAILL 429 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~--G~lvll 429 (494)
- ++ -+.-..+--.++|+.+.+.|+||+ |++.++
T Consensus 145 ~-----~v-LHdw~d~~~~~iL~~~~~al~pgg~~~~lli~ 179 (244)
T d1fp2a2 145 K-----YI-LHNWTDKDCLRILKKCKEAVTNDGKRGKVTII 179 (244)
T ss_dssp E-----SC-GGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred E-----ee-cccCChHHHHHHHHHHHHHcCcccCCcEEEEE
Confidence 2 11 111112234467778999999971 455553
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=97.39 E-value=0.00012 Score=67.63 Aligned_cols=75 Identities=11% Similarity=0.085 Sum_probs=51.1
Q ss_pred eeeeeccccc--cCCCCCeeEEEEcCCCccccCC------ccchHHHHHHHHHHHhhcccCCCcEEEEEecCHH--HHHH
Q psy19 369 SPLVCNVRQL--CFKPACVDGIVTDLPFGKRVGS------KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRK--HLIQ 438 (494)
Q Consensus 369 ~~~~~Da~~l--~~~~~~~D~IVtNPPYG~r~~~------~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~--~l~~ 438 (494)
.++++|..++ .++++++|+||+||||+..... ..+-...+..++.++.|+|+|+ |.+++...... .+..
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~-g~~~~~~~~~~~~~~~~ 84 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKD-GSLYIFNTPFNCAFICQ 84 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEE-EEEEEEECHHHHHHHHH
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccC-cccccccCchhhhhhhh
Confidence 4889998875 4677899999999999754321 1223345567888999999998 88776654432 2334
Q ss_pred HHHhcc
Q psy19 439 ALHITS 444 (494)
Q Consensus 439 ~l~~~~ 444 (494)
.+...+
T Consensus 85 ~~~~~g 90 (256)
T d1g60a_ 85 YLVSKG 90 (256)
T ss_dssp HHHHTT
T ss_pred hhhccc
Confidence 455444
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=97.34 E-value=9.5e-05 Score=69.32 Aligned_cols=62 Identities=16% Similarity=0.259 Sum_probs=46.9
Q ss_pred eeeeeccccc--cCCCCCeeEEEEcCCCccccCCc---cchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 369 SPLVCNVRQL--CFKPACVDGIVTDLPFGKRVGSK---SNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 369 ~~~~~Da~~l--~~~~~~~D~IVtNPPYG~r~~~~---~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
.++.+|..++ .++++++|+|+|||||+...+.. .+-.+....++.++.|+|+|+ |.+++...
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~-G~~~~~~~ 72 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPT-GSIAIFGG 72 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCC-ccEEEecC
Confidence 3677898876 57789999999999998654321 233455567788999999999 98888654
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=97.10 E-value=0.00018 Score=68.37 Aligned_cols=62 Identities=16% Similarity=0.255 Sum_probs=46.1
Q ss_pred eeeeeccccc--cCCCCCeeEEEEcCCCccccCCc------cchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 369 SPLVCNVRQL--CFKPACVDGIVTDLPFGKRVGSK------SNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 369 ~~~~~Da~~l--~~~~~~~D~IVtNPPYG~r~~~~------~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
.++++|..++ .++++++|+|++||||+...... .+-.+.+...+.++.++|+|+ |.+++...
T Consensus 14 ~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~-G~i~i~~~ 83 (320)
T d1booa_ 14 SMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPD-GSFVVDFG 83 (320)
T ss_dssp EEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred EEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCccc-Cccccccc
Confidence 6899998875 46678999999999997543221 122344566788999999998 98887654
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.04 E-value=0.0019 Score=57.55 Aligned_cols=103 Identities=15% Similarity=0.077 Sum_probs=71.1
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc--------
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-------- 379 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-------- 379 (494)
.+++..|||+||+.|+..-.++.. .+...++|+|+.+.. .+ ..+.++++|+....
T Consensus 20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~---------------~i-~~~~~~~~d~~~~~~~~~~~~~ 83 (180)
T d1ej0a_ 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD---------------PI-VGVDFLQGDFRDELVMKALLER 83 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC---------------CC-TTEEEEESCTTSHHHHHHHHHH
T ss_pred cCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc---------------cc-CCceEeecccccchhhhhhhhh
Confidence 478999999999999998877654 445789999986621 11 23567888876531
Q ss_pred CCCCCeeEEEEcCCCccc---cCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 380 FKPACVDGIVTDLPFGKR---VGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 380 ~~~~~~D~IVtNPPYG~r---~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
.....+|+|++|.-.... ..++.....|....+.-+.++|++| |.+++
T Consensus 84 ~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~g-G~fV~ 134 (180)
T d1ej0a_ 84 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPG-GSFVV 134 (180)
T ss_dssp HTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEE
T ss_pred ccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCC-CcEEE
Confidence 124679999999754321 1111234456666777888999999 98886
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.75 E-value=0.0014 Score=63.65 Aligned_cols=76 Identities=13% Similarity=-0.018 Sum_probs=58.0
Q ss_pred chHHHHHHHHHHhCCC------CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccce
Q psy19 295 LKPTIAYNMVRLASPI------PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKV 368 (494)
Q Consensus 295 L~e~lAa~ll~la~~~------~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i 368 (494)
.+++++..++..++.. .+..|||+|+|.|.+..+........+++++|+|+..+...+.... ..++
T Consensus 21 ~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~--------~~~~ 92 (322)
T d1i4wa_ 21 WNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE--------GSPL 92 (322)
T ss_dssp CCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT--------TSSC
T ss_pred CCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc--------CCCc
Confidence 6888999998887653 4678999999999998877654222489999999999988776543 1245
Q ss_pred eeeeeccccc
Q psy19 369 SPLVCNVRQL 378 (494)
Q Consensus 369 ~~~~~Da~~l 378 (494)
.++++|+..+
T Consensus 93 ~ii~~D~l~~ 102 (322)
T d1i4wa_ 93 QILKRDPYDW 102 (322)
T ss_dssp EEECSCTTCH
T ss_pred EEEeCchhhc
Confidence 7888888654
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=96.71 E-value=0.0045 Score=58.49 Aligned_cols=95 Identities=14% Similarity=0.221 Sum_probs=64.2
Q ss_pred EEEEEcCCcChHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC-CCCeeEEEEc
Q psy19 314 VFLDPMCGGGTIPVECSLSYPHT-FFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK-PACVDGIVTD 391 (494)
Q Consensus 314 ~VLDP~CGSGtilIEAA~~~~~~-~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~-~~~~D~IVtN 391 (494)
.|+|+|||.|++.+-+-.. |. .++++|+|+.+++..+.|.. ..+..+|+.++... -..+|+++.-
T Consensus 2 k~~~lF~G~Gg~~~gl~~a--G~~~~~a~e~d~~a~~~~~~N~~-----------~~~~~~Di~~~~~~~~~~~dll~~g 68 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNHS-----------AKLIKGDISKISSDEFPKCDGIIGG 68 (324)
T ss_dssp EEEEESCSSCHHHHHHHHH--TCEEEEEEECCHHHHHHHHHHCC-----------SEEEESCTTTSCGGGSCCCSEEEEC
T ss_pred eEEEeCcCcCHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHCC-----------CCCccCChhhCCHhHcccccEEeec
Confidence 6999999999987654443 33 46699999999999888843 13567888887422 1368999999
Q ss_pred CC---C---ccccCCccchHHHHHHHHHHHhhcccCC
Q psy19 392 LP---F---GKRVGSKSNNFLLYRLFLIEIGKIVRPQ 422 (494)
Q Consensus 392 PP---Y---G~r~~~~~~~~~ly~~fL~~l~rvLkpg 422 (494)
|| | |.+.+.......++..+++ +.+.++|.
T Consensus 69 ~PCq~fS~ag~~~g~~d~r~~l~~~~~~-~i~~~~Pk 104 (324)
T d1dcta_ 69 PPCQSWSEGGSLRGIDDPRGKLFYEYIR-ILKQKKPI 104 (324)
T ss_dssp CCCTTTSSSSCCCCSSSHHHHHHHHHHH-HHHHHCCS
T ss_pred ccccccccccccccccccccchHHHHHH-HHHhhCCc
Confidence 99 3 3333333233355555554 45567887
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=96.68 E-value=0.0031 Score=60.21 Aligned_cols=97 Identities=16% Similarity=0.134 Sum_probs=63.8
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC-CCCeeEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHT-FFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK-PACVDGI 388 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~-~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~-~~~~D~I 388 (494)
.+.+|+|+|||.|++...+-.. |. .+.++|+|+.|++..+.|... ..++|+.++... -..+|++
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a--G~~~v~a~e~d~~a~~~~~~N~~~------------~~~~Di~~~~~~~~~~~Dll 75 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGE------------KPEGDITQVNEKTIPDHDIL 75 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSC------------CCBSCGGGSCGGGSCCCSEE
T ss_pred CCCeEEEECccccHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHCCC------------CCcCchhcCchhhcceeeee
Confidence 5689999999999998765544 43 466789999999999998641 124677666322 1369999
Q ss_pred EEcCCC------ccccCCccchHHHHHHHHHHHhhcccCC
Q psy19 389 VTDLPF------GKRVGSKSNNFLLYRLFLIEIGKIVRPQ 422 (494)
Q Consensus 389 VtNPPY------G~r~~~~~~~~~ly~~fL~~l~rvLkpg 422 (494)
+.-||= |.+.+....-..++..+++ +.+.++|.
T Consensus 76 ~ggpPCq~fS~ag~~~g~~d~r~~l~~~~~~-~i~~~kP~ 114 (327)
T d2c7pa1 76 CAGFPCQAFSISGKQKGFEDSRGTLFFDIAR-IVREKKPK 114 (327)
T ss_dssp EEECCCTTTCTTSCCCGGGSTTSCHHHHHHH-HHHHHCCS
T ss_pred ecccccchhhhhhhhcCCcccchhHHHHHHH-HHhccCCc
Confidence 999994 2222211112235555544 44567887
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=95.99 E-value=0.0035 Score=58.57 Aligned_cols=110 Identities=12% Similarity=-0.016 Sum_probs=61.4
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee-eccccccCCCCCee
Q psy19 308 SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV-CNVRQLCFKPACVD 386 (494)
Q Consensus 308 ~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~-~Da~~l~~~~~~~D 386 (494)
.++++..|+|+|||.|..+-.|+..-+...+.|+++--.. . + ........+ .+.+.+.. .|++.+ +....|
T Consensus 63 ~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~---~-e-~P~~~~~~~-~ni~~~~~~~dv~~l--~~~~~D 134 (257)
T d2p41a1 63 LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPG---H-E-EPIPMSTYG-WNLVRLQSGVDVFFI--PPERCD 134 (257)
T ss_dssp SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTT---S-C-CCCCCCSTT-GGGEEEECSCCTTTS--CCCCCS
T ss_pred CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcc---c-c-CCccccccc-cccccchhhhhHHhc--CCCcCC
Confidence 4578889999999999999999877555567777762110 0 0 000000000 01122222 234333 346899
Q ss_pred EEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 387 GIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 387 ~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
+|+||. +...+...--...--+.|+-+.++|+|| |.+++
T Consensus 135 ~vlcDm--~ess~~~~vd~~Rtl~vLela~~wLk~g-g~Fvv 173 (257)
T d2p41a1 135 TLLCDI--GESSPNPTVEAGRTLRVLNLVENWLSNN-TQFCV 173 (257)
T ss_dssp EEEECC--CCCCSSHHHHHHHHHHHHHHHHHHCCTT-CEEEE
T ss_pred EEEeeC--CCCCCCchhhhhhHHHHHHHHHHHcccC-CEEEE
Confidence 999996 3332222100111124567788899999 87765
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.90 E-value=0.006 Score=58.15 Aligned_cols=100 Identities=16% Similarity=0.134 Sum_probs=57.5
Q ss_pred CEEEEEcCCcChHHHHHHhcCCC-CeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC---CCCCeeEE
Q psy19 313 DVFLDPMCGGGTIPVECSLSYPH-TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF---KPACVDGI 388 (494)
Q Consensus 313 ~~VLDP~CGSGtilIEAA~~~~~-~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~---~~~~~D~I 388 (494)
.+|+|+|||.|++...+-..+-. -.++++|+++.+++..+.|... ..++.+|+.++.. +...+|++
T Consensus 3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~----------~~~~~~di~~~~~~~~~~~~~Dll 72 (343)
T d1g55a_ 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH----------TQLLAKTIEGITLEEFDRLSFDMI 72 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT----------SCEECSCGGGCCHHHHHHHCCSEE
T ss_pred CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCC----------CCcccCchhhCCHhHcCCCCccEE
Confidence 47999999999886544333111 2477999999999999988531 1345567665532 12368999
Q ss_pred EEcCC---C---ccccCCccchHHHHHHHHHHHhhc-ccCC
Q psy19 389 VTDLP---F---GKRVGSKSNNFLLYRLFLIEIGKI-VRPQ 422 (494)
Q Consensus 389 VtNPP---Y---G~r~~~~~~~~~ly~~fL~~l~rv-Lkpg 422 (494)
+.-|| | |.+.+.......|+..+++-+..+ -+|.
T Consensus 73 ~ggpPCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk 113 (343)
T d1g55a_ 73 LMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPK 113 (343)
T ss_dssp EECCC------------------CHHHHHHHHGGGCSSCCS
T ss_pred EeecccccccccccccccccccccccchhhhhHhhhcCCCc
Confidence 99999 3 323222222234555555444332 1576
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.56 E-value=0.028 Score=49.06 Aligned_cols=108 Identities=14% Similarity=0.060 Sum_probs=67.3
Q ss_pred HHHHHHHHhCCCCCCEEEEEcCCc-ChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecc--
Q psy19 299 IAYNMVRLASPIPGDVFLDPMCGG-GTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNV-- 375 (494)
Q Consensus 299 lAa~ll~la~~~~g~~VLDP~CGS-GtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da-- 375 (494)
.|+..+..+++++|++|+=.|||. |.+.+.+|+.....+|+++|.++.-++.|++ .|. ...++....+.
T Consensus 15 ta~~a~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~----lGa----~~~i~~~~~~~~~ 86 (174)
T d1jqba2 15 TGFHGAELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF----YGA----TDILNYKNGHIED 86 (174)
T ss_dssp HHHHHHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH----HTC----SEEECGGGSCHHH
T ss_pred HHHHHHHHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh----hCc----cccccccchhHHH
Confidence 345557788999999999888875 6666666665422479999999998888874 221 11111221221
Q ss_pred --ccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 376 --RQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 376 --~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
.++. ....+|+||-. .+.. ..++...+.++|+ |+++++.
T Consensus 87 ~v~~~t-~g~G~D~vid~------~g~~--------~~~~~a~~~~~~~-G~iv~~G 127 (174)
T d1jqba2 87 QVMKLT-NGKGVDRVIMA------GGGS--------ETLSQAVKMVKPG-GIISNIN 127 (174)
T ss_dssp HHHHHT-TTSCEEEEEEC------SSCT--------THHHHHHHHEEEE-EEEEECC
T ss_pred HHHHHh-hccCcceEEEc------cCCH--------HHHHHHHHHHhcC-CEEEEEe
Confidence 1111 12359988763 2222 1223567799998 9998863
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.01 E-value=0.024 Score=48.84 Aligned_cols=108 Identities=12% Similarity=0.013 Sum_probs=64.5
Q ss_pred HHHHHHHHhCCCCCCEEEEEcCC-cChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee-eccc
Q psy19 299 IAYNMVRLASPIPGDVFLDPMCG-GGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV-CNVR 376 (494)
Q Consensus 299 lAa~ll~la~~~~g~~VLDP~CG-SGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~-~Da~ 376 (494)
.|+..+..++.++|++|+-.||| .|.+.+.+|+. .+++++++|.++..++.|++. |.. ..+.... .++.
T Consensus 15 Ta~~al~~~~~~~g~~vlI~GaG~vG~~a~q~ak~-~G~~vi~~~~~~~k~~~a~~l----Ga~----~~i~~~~~~~~~ 85 (168)
T d1piwa2 15 TVYSPLVRNGCGPGKKVGIVGLGGIGSMGTLISKA-MGAETYVISRSSRKREDAMKM----GAD----HYIATLEEGDWG 85 (168)
T ss_dssp HHHHHHHHTTCSTTCEEEEECCSHHHHHHHHHHHH-HTCEEEEEESSSTTHHHHHHH----TCS----EEEEGGGTSCHH
T ss_pred HHHHHHHHhCcCCCCEEEEECCCCcchhHHHHhhh-ccccccccccchhHHHHhhcc----CCc----EEeeccchHHHH
Confidence 34556677899999999999887 45555555543 378999999999988888763 321 1111111 1111
Q ss_pred cccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 377 QLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 377 ~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
. .. .+.+|+|+.--.-+... . + ....+.|+|+ |+++++.
T Consensus 86 ~-~~-~~~~d~vi~~~~~~~~~----~----~----~~~~~~l~~~-G~iv~~G 124 (168)
T d1piwa2 86 E-KY-FDTFDLIVVCASSLTDI----D----F----NIMPKAMKVG-GRIVSIS 124 (168)
T ss_dssp H-HS-CSCEEEEEECCSCSTTC----C----T----TTGGGGEEEE-EEEEECC
T ss_pred H-hh-hcccceEEEEecCCccc----h----H----HHHHHHhhcc-ceEEEec
Confidence 1 11 25789877521111000 0 1 1367789998 9998874
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=94.78 E-value=0.038 Score=48.07 Aligned_cols=100 Identities=14% Similarity=0.107 Sum_probs=62.3
Q ss_pred HHhCCCCCCEEEEEcCCc-ChHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecc-------
Q psy19 305 RLASPIPGDVFLDPMCGG-GTIPVECSLSYPHT-FFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNV------- 375 (494)
Q Consensus 305 ~la~~~~g~~VLDP~CGS-GtilIEAA~~~~~~-~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da------- 375 (494)
+.+.+++|++||-.|||. |.+.+.+|+.. ++ .|+++|.++..++.|++. |. ...++....|.
T Consensus 22 ~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~-Ga~~Vi~~~~~~~~~~~a~~l----Ga----~~vi~~~~~~~~~~~~~i 92 (182)
T d1vj0a2 22 EYPESFAGKTVVIQGAGPLGLFGVVIARSL-GAENVIVIAGSPNRLKLAEEI----GA----DLTLNRRETSVEERRKAI 92 (182)
T ss_dssp TCSSCCBTCEEEEECCSHHHHHHHHHHHHT-TBSEEEEEESCHHHHHHHHHT----TC----SEEEETTTSCHHHHHHHH
T ss_pred HHhCCCCCCEEEEECCCccchhheeccccc-ccccccccccccccccccccc----cc----eEEEeccccchHHHHHHH
Confidence 456788999999998763 55666666554 55 799999999999988753 21 11111112222
Q ss_pred ccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 376 RQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 376 ~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
.++. ....+|+|+- ..+.. ..++.+.+.|+++ |+++++
T Consensus 93 ~~~~-~~~g~Dvvid------~vG~~--------~~~~~a~~~l~~~-G~iv~~ 130 (182)
T d1vj0a2 93 MDIT-HGRGADFILE------ATGDS--------RALLEGSELLRRG-GFYSVA 130 (182)
T ss_dssp HHHT-TTSCEEEEEE------CSSCT--------THHHHHHHHEEEE-EEEEEC
T ss_pred HHhh-CCCCceEEee------cCCch--------hHHHHHHHHhcCC-CEEEEE
Confidence 1111 1246998875 23332 1223577899999 998876
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=94.37 E-value=0.018 Score=53.14 Aligned_cols=95 Identities=7% Similarity=-0.045 Sum_probs=58.3
Q ss_pred CEEEEEcCCcChHHHHHHhc----CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc----CCCCC
Q psy19 313 DVFLDPMCGGGTIPVECSLS----YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC----FKPAC 384 (494)
Q Consensus 313 ~~VLDP~CGSGtilIEAA~~----~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~----~~~~~ 384 (494)
.+||++|++.|.-++..|.. .+.++++|+|+++.....+. ....++.++++|..+.. +....
T Consensus 82 k~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~----------~~~~~I~~i~gDs~~~~~~~~l~~~~ 151 (232)
T d2bm8a1 82 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA----------SDMENITLHQGDCSDLTTFEHLREMA 151 (232)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG----------GGCTTEEEEECCSSCSGGGGGGSSSC
T ss_pred CEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh----------ccccceeeeecccccHHHHHHHHhcC
Confidence 58999999999766544432 35689999999875322111 12356889999876542 23346
Q ss_pred eeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 385 VDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 385 ~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
+|+|+.|= .+... ..+..+ .+..+|++| |.+++
T Consensus 152 ~dlIfID~-------~H~~~-~v~~~~--~~~~lLk~G-G~iIv 184 (232)
T d2bm8a1 152 HPLIFIDN-------AHANT-FNIMKW--AVDHLLEEG-DYFII 184 (232)
T ss_dssp SSEEEEES-------SCSSH-HHHHHH--HHHHTCCTT-CEEEE
T ss_pred CCEEEEcC-------CcchH-HHHHHH--HHhcccCcC-CEEEE
Confidence 78888862 11111 112222 245789998 87665
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.14 E-value=0.068 Score=45.68 Aligned_cols=108 Identities=19% Similarity=0.198 Sum_probs=66.7
Q ss_pred HHHHHHHHhCCCCCCEEEEEcCC--cChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccc
Q psy19 299 IAYNMVRLASPIPGDVFLDPMCG--GGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVR 376 (494)
Q Consensus 299 lAa~ll~la~~~~g~~VLDP~CG--SGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~ 376 (494)
.|+..+..++.++++.|+=.||| .|.+.+.++.......|+++|.++.-++.+++. |. ...+.....|..
T Consensus 15 Ta~~al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----Ga----~~~i~~~~~~~~ 86 (170)
T d1jvba2 15 TTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GA----DYVINASMQDPL 86 (170)
T ss_dssp HHHHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TC----SEEEETTTSCHH
T ss_pred HHHHHHHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----CC----ceeeccCCcCHH
Confidence 47777888899999999999973 344445444444346899999999988888864 21 001111111211
Q ss_pred cc--c-CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 377 QL--C-FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 377 ~l--~-~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+. . .....+|+|+-- .+.. ..++.+.+.++|+ |+++++
T Consensus 87 ~~~~~~~~~~~~d~vid~------~g~~--------~~~~~a~~~l~~~-G~iv~~ 127 (170)
T d1jvba2 87 AEIRRITESKGVDAVIDL------NNSE--------KTLSVYPKALAKQ-GKYVMV 127 (170)
T ss_dssp HHHHHHTTTSCEEEEEES------CCCH--------HHHTTGGGGEEEE-EEEEEC
T ss_pred HHHHHHhhcccchhhhcc------cccc--------hHHHhhhhhcccC-CEEEEe
Confidence 11 0 112468988762 2221 2233578899999 998876
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.87 E-value=0.11 Score=44.51 Aligned_cols=107 Identities=11% Similarity=0.003 Sum_probs=63.8
Q ss_pred HHHHHHhCCCCCCEEEEEcCCcChHHH-HHHhcCCCC-eEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc
Q psy19 301 YNMVRLASPIPGDVFLDPMCGGGTIPV-ECSLSYPHT-FFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378 (494)
Q Consensus 301 a~ll~la~~~~g~~VLDP~CGSGtilI-EAA~~~~~~-~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l 378 (494)
...+..+++++|++|+=.|||..+++. ..|.. .++ +|+++|.++.-++.|++. |. ...+.....|....
T Consensus 16 ~~a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~-~G~~~Vi~~d~~~~rl~~a~~~----Ga----~~~~~~~~~~~~~~ 86 (171)
T d1pl8a2 16 IHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKA-MGAAQVVVTDLSATRLSKAKEI----GA----DLVLQISKESPQEI 86 (171)
T ss_dssp HHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHH-TTCSEEEEEESCHHHHHHHHHT----TC----SEEEECSSCCHHHH
T ss_pred HHHHHHhCCCCCCEEEEECCCccHHHHHHHHHH-cCCceEEeccCCHHHHHHHHHh----CC----cccccccccccccc
Confidence 344567889999999998887554433 33333 355 799999999999988753 21 00111111111111
Q ss_pred ----c-CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 379 ----C-FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 379 ----~-~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
. .....+|+||- ..+.. ..++.+.+.++++ |+++++..
T Consensus 87 ~~~~~~~~g~g~Dvvid------~~G~~--------~~~~~a~~~~~~g-G~iv~~G~ 129 (171)
T d1pl8a2 87 ARKVEGQLGCKPEVTIE------CTGAE--------ASIQAGIYATRSG-GTLVLVGL 129 (171)
T ss_dssp HHHHHHHHTSCCSEEEE------CSCCH--------HHHHHHHHHSCTT-CEEEECSC
T ss_pred cccccccCCCCceEEEe------ccCCc--------hhHHHHHHHhcCC-CEEEEEec
Confidence 0 01246888776 23332 2344678899999 99888643
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.66 E-value=0.11 Score=44.84 Aligned_cols=106 Identities=10% Similarity=0.048 Sum_probs=63.2
Q ss_pred HHHHHhCCCCCCEEEEEcCCcChH-HHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc--
Q psy19 302 NMVRLASPIPGDVFLDPMCGGGTI-PVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-- 378 (494)
Q Consensus 302 ~ll~la~~~~g~~VLDP~CGSGti-lIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-- 378 (494)
++++.+++++|++|+=.|||.-++ .+.+|.......+++.|.++.-++.|++. |. ...+.....|+.+.
T Consensus 19 a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga----~~~i~~~~~~~~~~i~ 90 (174)
T d1f8fa2 19 ACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GA----THVINSKTQDPVAAIK 90 (174)
T ss_dssp HHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TC----SEEEETTTSCHHHHHH
T ss_pred HHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CC----eEEEeCCCcCHHHHHH
Confidence 346677899999999887764332 33333333335778889999988888763 22 11111112222221
Q ss_pred cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 379 CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 379 ~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
.+.++.+|+||-. .+.. ..++.+.++++|+ |+++++.
T Consensus 91 ~~t~gg~D~vid~------~G~~--------~~~~~~~~~~~~~-G~i~~~G 127 (174)
T d1f8fa2 91 EITDGGVNFALES------TGSP--------EILKQGVDALGIL-GKIAVVG 127 (174)
T ss_dssp HHTTSCEEEEEEC------SCCH--------HHHHHHHHTEEEE-EEEEECC
T ss_pred HHcCCCCcEEEEc------CCcH--------HHHHHHHhcccCc-eEEEEEe
Confidence 1223579988762 3322 2334678899998 9998863
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.58 E-value=0.098 Score=44.93 Aligned_cols=101 Identities=16% Similarity=0.068 Sum_probs=63.2
Q ss_pred HHHhCCCCCCEEEEEcC--CcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc---
Q psy19 304 VRLASPIPGDVFLDPMC--GGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL--- 378 (494)
Q Consensus 304 l~la~~~~g~~VLDP~C--GSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l--- 378 (494)
...+++++|++||-.++ |.|.+.+.+|... ++++++++.+++..+.+++ .|. ...++....|+.+.
T Consensus 21 ~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~----~Ga----~~vi~~~~~~~~~~i~~ 91 (174)
T d1yb5a2 21 IHSACVKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQ----NGA----HEVFNHREVNYIDKIKK 91 (174)
T ss_dssp HTTSCCCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----TTC----SEEEETTSTTHHHHHHH
T ss_pred HHHhCCCCCCEEEEEecccccccccccccccc-Ccccccccccccccccccc----cCc----ccccccccccHHHHhhh
Confidence 35667899999999986 3556666666554 6899999989887777764 342 11122222232211
Q ss_pred cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 379 CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 379 ~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
......+|+|+... + . ..+....+.|+|+ |+++++
T Consensus 92 ~t~~~g~d~v~d~~------g-----~----~~~~~~~~~l~~~-G~iv~~ 126 (174)
T d1yb5a2 92 YVGEKGIDIIIEML------A-----N----VNLSKDLSLLSHG-GRVIVV 126 (174)
T ss_dssp HHCTTCEEEEEESC------H-----H----HHHHHHHHHEEEE-EEEEEC
T ss_pred hhccCCceEEeecc------c-----H----HHHHHHHhccCCC-CEEEEE
Confidence 11235699888732 1 1 1234577899999 999886
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=93.50 E-value=0.18 Score=42.82 Aligned_cols=108 Identities=15% Similarity=0.094 Sum_probs=65.1
Q ss_pred HHHHHHHhCCCCCCEEEEEcCC-cChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee--eeccc
Q psy19 300 AYNMVRLASPIPGDVFLDPMCG-GGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL--VCNVR 376 (494)
Q Consensus 300 Aa~ll~la~~~~g~~VLDP~CG-SGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~--~~Da~ 376 (494)
|...+..+++++|++|+-.||| .|.+.+.+|+.+ +++++++|.++.-++.|++.-. .. .+... ..|..
T Consensus 15 a~~a~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga------~~--~~~~~~~~~~~~ 85 (170)
T d1e3ja2 15 GVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGA------DV--TLVVDPAKEEES 85 (170)
T ss_dssp HHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTC------SE--EEECCTTTSCHH
T ss_pred HHHHHHHhCCCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCC------cE--EEeccccccccc
Confidence 3344677889999999998877 344455555544 6899999999999998887321 00 00000 00110
Q ss_pred ----cc-cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 377 ----QL-CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 377 ----~l-~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
.+ ......+|+||-- .+.. ..+..+.++|+++ |+++++..
T Consensus 86 ~~~~~~~~~~g~g~D~vid~------~g~~--------~~~~~a~~~~~~~-G~iv~~G~ 130 (170)
T d1e3ja2 86 SIIERIRSAIGDLPNVTIDC------SGNE--------KCITIGINITRTG-GTLMLVGM 130 (170)
T ss_dssp HHHHHHHHHSSSCCSEEEEC------SCCH--------HHHHHHHHHSCTT-CEEEECSC
T ss_pred hhhhhhhcccccCCceeeec------CCCh--------HHHHHHHHHHhcC-CceEEEec
Confidence 01 0112468888752 2221 2344677899999 99988643
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.17 E-value=0.11 Score=46.04 Aligned_cols=115 Identities=16% Similarity=0.140 Sum_probs=68.5
Q ss_pred HHHHHHHhCCCCCCEEEEEcCCc-ChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc
Q psy19 300 AYNMVRLASPIPGDVFLDPMCGG-GTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378 (494)
Q Consensus 300 Aa~ll~la~~~~g~~VLDP~CGS-GtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l 378 (494)
|+.-+..++.++|++||-.|||. |.+.+.+|.......|+++|.++.-++.|++. |. ...+.....|+.+-
T Consensus 14 a~~a~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga----~~~~~~~~~~~~~~ 85 (195)
T d1kola2 14 GYHGAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GF----EIADLSLDTPLHEQ 85 (195)
T ss_dssp HHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TC----EEEETTSSSCHHHH
T ss_pred HHHHHHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----cc----cEEEeCCCcCHHHH
Confidence 44556788999999999999987 44555555554456899999999999988764 21 00011111222110
Q ss_pred --c-CCCCCeeEEEEcCC-------CccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 379 --C-FKPACVDGIVTDLP-------FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 379 --~-~~~~~~D~IVtNPP-------YG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
. .....+|+++-.-. ....... .. ...++.+.+.++|+ |+++++
T Consensus 86 i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~--~~----~~~l~~~~~~~r~g-G~v~~~ 139 (195)
T d1kola2 86 IAALLGEPEVDCAVDAVGFEARGHGHEGAKHE--AP----ATVLNSLMQVTRVA-GKIGIP 139 (195)
T ss_dssp HHHHHSSSCEEEEEECCCTTCBCSSTTGGGSB--CT----THHHHHHHHHEEEE-EEEEEC
T ss_pred HHHHhCCCCcEEEEECccccccCCcccceeec--Cc----HHHHHHHHHHHhcC-CEEEEe
Confidence 0 11246888874211 0000000 01 13455788999999 999886
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.04 E-value=0.14 Score=43.35 Aligned_cols=108 Identities=18% Similarity=0.156 Sum_probs=64.4
Q ss_pred HHHHHHHHHhCCCCCCEEEEEcCCcChHH-HHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccc
Q psy19 298 TIAYNMVRLASPIPGDVFLDPMCGGGTIP-VECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVR 376 (494)
Q Consensus 298 ~lAa~ll~la~~~~g~~VLDP~CGSGtil-IEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~ 376 (494)
..|+..+..++.++|++||=.|||+-+++ +.+|.. .++.++++|.++.-++.++. .|.. ..+.....|..
T Consensus 14 ~Ta~~al~~~~~~~g~~vlv~G~G~iG~~a~~~a~~-~g~~v~~~~~~~~r~~~~k~----~Ga~----~~~~~~~~~~~ 84 (168)
T d1rjwa2 14 VTTYKALKVTGAKPGEWVAIYGIGGLGHVAVQYAKA-MGLNVVAVDIGDEKLELAKE----LGAD----LVVNPLKEDAA 84 (168)
T ss_dssp HHHHHHHHHHTCCTTCEEEEECCSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHH----TTCS----EEECTTTSCHH
T ss_pred HHHHHHHHHhCCCCCCEEEEeecccchhhhhHHHhc-CCCeEeccCCCHHHhhhhhh----cCcc----eecccccchhh
Confidence 34667788889999999998887764443 333444 36789999999998888766 3321 11111111221
Q ss_pred c-ccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 377 Q-LCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 377 ~-l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
. +......+|.+|.+.+-+ ..+..+.+.|+|+ |+++++
T Consensus 85 ~~~~~~~~~~~~~v~~~~~~--------------~~~~~a~~~l~~~-G~i~~~ 123 (168)
T d1rjwa2 85 KFMKEKVGGVHAAVVTAVSK--------------PAFQSAYNSIRRG-GACVLV 123 (168)
T ss_dssp HHHHHHHSSEEEEEESSCCH--------------HHHHHHHHHEEEE-EEEEEC
T ss_pred hhcccccCCCceEEeecCCH--------------HHHHHHHHHhccC-CceEec
Confidence 1 110012455556654311 2234678889998 998876
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=89.99 E-value=0.54 Score=39.73 Aligned_cols=105 Identities=16% Similarity=0.159 Sum_probs=63.6
Q ss_pred HHHHHHHhCCCCCCEEEEEcCCc-ChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc
Q psy19 300 AYNMVRLASPIPGDVFLDPMCGG-GTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378 (494)
Q Consensus 300 Aa~ll~la~~~~g~~VLDP~CGS-GtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l 378 (494)
|+..+..++.++|++|+=.|||. |.+.+..|+.. ++.++++|.++.-.+.+++ .|. ...++....+...
T Consensus 19 ay~al~~~~~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~----lGa----d~~i~~~~~~~~~- 88 (168)
T d1uufa2 19 TYSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKA----LGA----DEVVNSRNADEMA- 88 (168)
T ss_dssp HHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHH----HTC----SEEEETTCHHHHH-
T ss_pred HHHHHHHhCCCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhc----cCC----cEEEECchhhHHH-
Confidence 45666788999999999887753 44555555543 6788899999887777664 232 1011111111111
Q ss_pred cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 379 CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 379 ~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
.....+|+++-. .+.... +. ...+.++++ |+++++.
T Consensus 89 -~~~~~~D~vid~------~g~~~~----~~----~~~~~l~~~-G~iv~~G 124 (168)
T d1uufa2 89 -AHLKSFDFILNT------VAAPHN----LD----DFTTLLKRD-GTMTLVG 124 (168)
T ss_dssp -TTTTCEEEEEEC------CSSCCC----HH----HHHTTEEEE-EEEEECC
T ss_pred -HhcCCCceeeee------eecchh----HH----HHHHHHhcC-CEEEEec
Confidence 112469988763 222222 12 467799998 9999874
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=89.13 E-value=0.56 Score=39.80 Aligned_cols=108 Identities=19% Similarity=0.114 Sum_probs=62.6
Q ss_pred HHHHHHHh--CCCCCCEEEEEcCCcChHH-HHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccc
Q psy19 300 AYNMVRLA--SPIPGDVFLDPMCGGGTIP-VECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVR 376 (494)
Q Consensus 300 Aa~ll~la--~~~~g~~VLDP~CGSGtil-IEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~ 376 (494)
|+..+..+ ..++|+.|+=.|||...++ +..|.......++++|.+++-++.+++.-. ...+.....+..
T Consensus 19 a~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga--------~~~i~~~~~~~~ 90 (172)
T d1h2ba2 19 AYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGA--------DHVVDARRDPVK 90 (172)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTC--------SEEEETTSCHHH
T ss_pred HHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhccc--------ceeecCcccHHH
Confidence 44555444 4689999999988755443 333433334688999999998888875321 111111111111
Q ss_pred cc-c-CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 377 QL-C-FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 377 ~l-~-~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
.. . .....+|+||-. .+.. ..+....+.|+++ |+++++.
T Consensus 91 ~~~~~~~~~g~d~vid~------~g~~--------~~~~~a~~~l~~~-G~iv~~G 131 (172)
T d1h2ba2 91 QVMELTRGRGVNVAMDF------VGSQ--------ATVDYTPYLLGRM-GRLIIVG 131 (172)
T ss_dssp HHHHHTTTCCEEEEEES------SCCH--------HHHHHGGGGEEEE-EEEEECC
T ss_pred HHHHhhCCCCceEEEEe------cCcc--------hHHHHHHHHHhCC-CEEEEEe
Confidence 11 1 112468988763 2321 2344688899999 9999863
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=89.04 E-value=0.41 Score=40.67 Aligned_cols=111 Identities=10% Similarity=0.048 Sum_probs=67.2
Q ss_pred chHHHHHHHH-HHhCCCCCCEEEEEcCC--cChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 295 LKPTIAYNMV-RLASPIPGDVFLDPMCG--GGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 295 L~e~lAa~ll-~la~~~~g~~VLDP~CG--SGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
+..-.|+..+ ..+..++|++||=.++| .|.+++.+|+.+ ++++++++.++.-++.+++ .|. ...++..
T Consensus 11 ~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~----lGa----~~vi~~~ 81 (179)
T d1qora2 11 LKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALK----AGA----WQVINYR 81 (179)
T ss_dssp HHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHH----HTC----SEEEETT
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHh----cCC----eEEEECC
Confidence 4444565444 45678899998887555 567777777765 6899999999999888774 232 1112222
Q ss_pred eeccccc--cC-CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 372 VCNVRQL--CF-KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 372 ~~Da~~l--~~-~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
..|+.+- .. ....+|+|+..- +. .. + ......++++ |+++++.
T Consensus 82 ~~d~~~~v~~~t~g~g~d~v~d~~------g~-~~----~----~~~~~~l~~~-G~~v~~g 127 (179)
T d1qora2 82 EEDLVERLKEITGGKKVRVVYDSV------GR-DT----W----ERSLDCLQRR-GLMVSFG 127 (179)
T ss_dssp TSCHHHHHHHHTTTCCEEEEEECS------CG-GG----H----HHHHHTEEEE-EEEEECC
T ss_pred CCCHHHHHHHHhCCCCeEEEEeCc------cH-HH----H----HHHHHHHhcC-Ceeeecc
Confidence 2232211 11 234688776632 21 11 2 2467799998 9887754
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.00 E-value=1.8 Score=39.17 Aligned_cols=81 Identities=11% Similarity=0.041 Sum_probs=57.1
Q ss_pred CCCEEEEEcCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-C-------
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-F------- 380 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~------- 380 (494)
.|.++|=-|+++ +|+.+.|..+ .|+.|++.|.++..++.+.+-+...+. ..++.++++|+.+.. .
T Consensus 9 k~Kv~lITGas~-GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~----~~~~~~~~~Dls~~~~v~~~v~~~ 83 (257)
T d1xg5a_ 9 RDRLALVTGASG-GIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGY----PGTLIPYRCDLSNEEDILSMFSAI 83 (257)
T ss_dssp TTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC----SSEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC----CceEEEEEccCCCHHHHHHHHHHH
Confidence 466788778665 4666655542 478999999999999998888876543 335667888887642 0
Q ss_pred --CCCCeeEEEEcCCCcc
Q psy19 381 --KPACVDGIVTDLPFGK 396 (494)
Q Consensus 381 --~~~~~D~IVtNPPYG~ 396 (494)
.-+.+|++|.|..+..
T Consensus 84 ~~~~g~iD~lVnnAg~~~ 101 (257)
T d1xg5a_ 84 RSQHSGVDICINNAGLAR 101 (257)
T ss_dssp HHHHCCCSEEEECCCCCC
T ss_pred HHhcCCCCEEEecccccC
Confidence 1257999999987653
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.91 E-value=0.59 Score=39.74 Aligned_cols=108 Identities=15% Similarity=0.047 Sum_probs=62.1
Q ss_pred HHHHHH-HHHHhCCCCCCEEEEEc--CCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 297 PTIAYN-MVRLASPIPGDVFLDPM--CGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 297 e~lAa~-ll~la~~~~g~~VLDP~--CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
.-.|+. +.+.+.+++|++||=.+ -|.|.+++..|..+ ++.++++.-+++-.+.+++ .|. ...+.....
T Consensus 10 ~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~~----~Ga----~~vi~~~~~ 80 (183)
T d1pqwa_ 10 YLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSR----LGV----EYVGDSRSV 80 (183)
T ss_dssp HHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHT----TCC----SEEEETTCS
T ss_pred HHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccc-cccceeeeccccccccccc----ccc----cccccCCcc
Confidence 334543 34666789999998765 23445556556544 6788888888876666653 332 111111222
Q ss_pred ccccc--c-CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 374 NVRQL--C-FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 374 Da~~l--~-~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
|+.+. . .....+|+|+.. .+. ..+..+.+.|+++ |+++.+
T Consensus 81 ~~~~~v~~~t~~~g~d~v~d~------~g~---------~~~~~~~~~l~~~-G~~v~~ 123 (183)
T d1pqwa_ 81 DFADEILELTDGYGVDVVLNS------LAG---------EAIQRGVQILAPG-GRFIEL 123 (183)
T ss_dssp THHHHHHHHTTTCCEEEEEEC------CCT---------HHHHHHHHTEEEE-EEEEEC
T ss_pred CHHHHHHHHhCCCCEEEEEec------ccc---------hHHHHHHHHhcCC-CEEEEE
Confidence 22221 1 123479999873 221 1223467899998 998876
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=85.88 E-value=0.93 Score=38.68 Aligned_cols=106 Identities=14% Similarity=0.094 Sum_probs=64.6
Q ss_pred HHHHH-HHHhCCCCCCEEEEEcCCc--ChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecc
Q psy19 299 IAYNM-VRLASPIPGDVFLDPMCGG--GTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNV 375 (494)
Q Consensus 299 lAa~l-l~la~~~~g~~VLDP~CGS--GtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da 375 (494)
.|+.. ...+++++|++||=.++|+ |..++.+|... +++++++..+++.++.++.. |. ...+.....|.
T Consensus 16 TA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~----Ga----~~vi~~~~~~~ 86 (182)
T d1v3va2 16 TAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQI----GF----DAAFNYKTVNS 86 (182)
T ss_dssp HHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT----TC----SEEEETTSCSC
T ss_pred HHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHcc-CCEEEEeCCCHHHHHHHHhh----hh----hhhcccccccH
Confidence 45544 4577889999999777644 45566666654 68999999999887777664 21 11111111121
Q ss_pred ccc---cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 376 RQL---CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 376 ~~l---~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
.+. ......+|+|+- ..+. ..+..+.+.|+++ |+++++
T Consensus 87 ~~~~~~~~~~~Gvd~v~D------~vG~---------~~~~~~~~~l~~~-G~~v~~ 127 (182)
T d1v3va2 87 LEEALKKASPDGYDCYFD------NVGG---------EFLNTVLSQMKDF-GKIAIC 127 (182)
T ss_dssp HHHHHHHHCTTCEEEEEE------SSCH---------HHHHHHGGGEEEE-EEEEEC
T ss_pred HHHHHHHhhcCCCceeEE------ecCc---------hhhhhhhhhccCC-CeEEee
Confidence 111 112346898765 2321 2233688999999 998876
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=85.46 E-value=0.55 Score=40.35 Aligned_cols=53 Identities=19% Similarity=0.103 Sum_probs=40.1
Q ss_pred HHHHHhCCCCCCEEEEEcCCcChH-HHHHHhcCCCCeEEEEeCCHHHHHHHHHH
Q psy19 302 NMVRLASPIPGDVFLDPMCGGGTI-PVECSLSYPHTFFVCGDINEKLVLKTQAN 354 (494)
Q Consensus 302 ~ll~la~~~~g~~VLDP~CGSGti-lIEAA~~~~~~~v~G~Did~~al~~Ar~N 354 (494)
++++.+++++|++|+=.|||...+ .+..+......+|+++|.+++-++.|++.
T Consensus 20 Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~ 73 (176)
T d1d1ta2 20 AAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV 73 (176)
T ss_dssp HHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred HHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence 345667899999999998875444 44444444346899999999999999875
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.89 E-value=4 Score=36.51 Aligned_cols=80 Identities=20% Similarity=0.130 Sum_probs=55.0
Q ss_pred CCCEEEEEcCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC--------
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF-------- 380 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~-------- 380 (494)
.|.++|=-|+++| |+.+.|..+ .|+.|+..|.+++.++.....+...| .++..+.+|..+..-
T Consensus 6 ~Gkv~lITGas~G-IG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~------~~~~~~~~Dvs~~~~v~~~~~~i 78 (244)
T d1yb1a_ 6 TGEIVLITGAGHG-IGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG------AKVHTFVVDCSNREDIYSSAKKV 78 (244)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEeeCCCHHHHHHHHHHH
Confidence 4667777777665 444444331 27899999999999999988887654 235677788776420
Q ss_pred --CCCCeeEEEEcCCCccc
Q psy19 381 --KPACVDGIVTDLPFGKR 397 (494)
Q Consensus 381 --~~~~~D~IVtNPPYG~r 397 (494)
..+..|++|.|--.+..
T Consensus 79 ~~~~g~idilinnag~~~~ 97 (244)
T d1yb1a_ 79 KAEIGDVSILVNNAGVVYT 97 (244)
T ss_dssp HHHTCCCSEEEECCCCCCC
T ss_pred HHHcCCCceeEeecccccc
Confidence 13579999999775543
|
| >d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: LPG1296-like domain: Uncharacterized protein LPG1296 species: Legionella pneumophila [TaxId: 446]
Probab=84.31 E-value=1 Score=41.70 Aligned_cols=96 Identities=8% Similarity=-0.076 Sum_probs=65.5
Q ss_pred EEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc-----cCCCCCeeEEEEc
Q psy19 317 DPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-----CFKPACVDGIVTD 391 (494)
Q Consensus 317 DP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-----~~~~~~~D~IVtN 391 (494)
...+||-.|+.. ..-+.-+++.+|++|.-....+.|+.. ..++.+.+.|.... |++ ..-.+|+.|
T Consensus 88 ~~YPGSP~ia~~--llR~~Drl~l~ELHp~e~~~L~~~~~~-------~~~~~v~~~DG~~~l~allPP~-~rRgLVLID 157 (271)
T d2oo3a1 88 SYYPGSPYFAIN--QLRSQDRLYLCELHPTEYNFLLKLPHF-------NKKVYVNHTDGVSKLNALLPPP-EKRGLIFID 157 (271)
T ss_dssp CEEECHHHHHHH--HSCTTSEEEEECCSHHHHHHHTTSCCT-------TSCEEEECSCHHHHHHHHCSCT-TSCEEEEEC
T ss_pred CcCCCCHHHHHH--hCCCCCceEEeecCHHHHHHHHHHhcc-------CCCceEEcCchHHHHHhhCCCC-CCceEEEec
Confidence 567888766443 334467899999999998888877542 24578888887653 433 567799999
Q ss_pred CCCccccCCccchHHHHHHHHHHHhhccc--CCCcEEEEEec
Q psy19 392 LPFGKRVGSKSNNFLLYRLFLIEIGKIVR--PQIGRAILLTS 431 (494)
Q Consensus 392 PPYG~r~~~~~~~~~ly~~fL~~l~rvLk--pg~G~lvllt~ 431 (494)
|||-..- + |.++++.+.+.++ |. |.+++=.|
T Consensus 158 PpYE~k~----e----y~~v~~~l~~a~kr~~~-g~~~iWYP 190 (271)
T d2oo3a1 158 PSYERKE----E----YKEIPYAIKNAYSKFST-GLYCVWYP 190 (271)
T ss_dssp CCCCSTT----H----HHHHHHHHHHHHHHCTT-SEEEEEEE
T ss_pred CCcCCHH----H----HHHHHHHHHHHHHhCCC-ceEEEEee
Confidence 9997541 2 6666666666666 55 76665444
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=84.07 E-value=0.69 Score=39.67 Aligned_cols=107 Identities=15% Similarity=0.060 Sum_probs=65.3
Q ss_pred HHHHHhCCCCCCEEEEEcCCc-ChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecc--ccc
Q psy19 302 NMVRLASPIPGDVFLDPMCGG-GTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNV--RQL 378 (494)
Q Consensus 302 ~ll~la~~~~g~~VLDP~CGS-GtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da--~~l 378 (494)
++++.+++++|++|+=.|||. |.+++.+|+......|+.+|.++.-++.|++. |. ...++....|. ...
T Consensus 19 a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~----Ga----~~~i~~~~~~~~~~~~ 90 (174)
T d1e3ia2 19 AAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----GA----TDCLNPRELDKPVQDV 90 (174)
T ss_dssp HHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TC----SEEECGGGCSSCHHHH
T ss_pred HHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh----CC----CcccCCccchhhhhhh
Confidence 456778899999999998876 66666666654335799999999988777763 21 11111111111 000
Q ss_pred --cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 379 --CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 379 --~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
....+.+|+++- -.+.. ..+....+.++++.|+++++-
T Consensus 91 ~~~~~~~G~d~vie------~~G~~--------~~~~~a~~~~~~g~G~~v~vG 130 (174)
T d1e3ia2 91 ITELTAGGVDYSLD------CAGTA--------QTLKAAVDCTVLGWGSCTVVG 130 (174)
T ss_dssp HHHHHTSCBSEEEE------SSCCH--------HHHHHHHHTBCTTTCEEEECC
T ss_pred HhhhhcCCCcEEEE------ecccc--------hHHHHHHHHhhcCCeEEEecC
Confidence 011246888875 23332 334467788988438888763
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.04 E-value=1.3 Score=36.92 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=39.2
Q ss_pred HHHHHHHhCCCCCCEEEEEcCCcC-hHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q psy19 300 AYNMVRLASPIPGDVFLDPMCGGG-TIPVECSLSYPHTFFVCGDINEKLVLKTQA 353 (494)
Q Consensus 300 Aa~ll~la~~~~g~~VLDP~CGSG-tilIEAA~~~~~~~v~G~Did~~al~~Ar~ 353 (494)
|+..++.+++++|++|+=.|||.= .+.+.+|+.. +++++++|.++.-++.+++
T Consensus 16 a~~al~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~ 69 (166)
T d1llua2 16 VYKGLKQTNARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARK 69 (166)
T ss_dssp HHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhc
Confidence 556677889999999998877643 2333344433 6899999999999888875
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=81.88 E-value=3.7 Score=36.80 Aligned_cols=80 Identities=15% Similarity=0.073 Sum_probs=55.9
Q ss_pred CCCEEEEEcCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-C-------
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-F------- 380 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~------- 380 (494)
.+.++|=.|+ ++.|+.+.|..+ .++.|+..|.+++.++.+...++..|. ++..+.+|+.+.. .
T Consensus 9 enKvalITGa-s~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~------~~~~~~~Dvt~~~~v~~~~~~~ 81 (251)
T d2c07a1 9 ENKVALVTGA-GRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY------ESSGYAGDVSKKEEISEVINKI 81 (251)
T ss_dssp SSCEEEEEST-TSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTC------CEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC------cEEEEEccCCCHHHHHHHHHHH
Confidence 3556666665 555777766543 468999999999999999888875542 3567788886541 0
Q ss_pred --CCCCeeEEEEcCCCccc
Q psy19 381 --KPACVDGIVTDLPFGKR 397 (494)
Q Consensus 381 --~~~~~D~IVtNPPYG~r 397 (494)
.-+.+|++|.|......
T Consensus 82 ~~~~g~iDilvnnag~~~~ 100 (251)
T d2c07a1 82 LTEHKNVDILVNNAGITRD 100 (251)
T ss_dssp HHHCSCCCEEEECCCCCCC
T ss_pred HHhcCCceeeeeccccccc
Confidence 12689999999876443
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=80.74 E-value=1.1 Score=37.62 Aligned_cols=52 Identities=17% Similarity=0.056 Sum_probs=39.1
Q ss_pred HHHHHhCCCCCCEEEEEcCCcChHHHH-HHhcCCCCeEEEEeCCHHHHHHHHH
Q psy19 302 NMVRLASPIPGDVFLDPMCGGGTIPVE-CSLSYPHTFFVCGDINEKLVLKTQA 353 (494)
Q Consensus 302 ~ll~la~~~~g~~VLDP~CGSGtilIE-AA~~~~~~~v~G~Did~~al~~Ar~ 353 (494)
++.+.+++++|++|+=.|||.+.+... .+.......|+++|.+++-++.|++
T Consensus 19 a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~ 71 (175)
T d1cdoa2 19 AAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV 71 (175)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred HHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH
Confidence 445678899999999999988655433 3334445689999999998887775
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| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=80.51 E-value=0.91 Score=38.73 Aligned_cols=52 Identities=13% Similarity=0.025 Sum_probs=38.5
Q ss_pred HHHHHhCCCCCCEEEEEcCCcChHH-HHHHhcCCCCeEEEEeCCHHHHHHHHH
Q psy19 302 NMVRLASPIPGDVFLDPMCGGGTIP-VECSLSYPHTFFVCGDINEKLVLKTQA 353 (494)
Q Consensus 302 ~ll~la~~~~g~~VLDP~CGSGtil-IEAA~~~~~~~v~G~Did~~al~~Ar~ 353 (494)
++++.+++++|++|+=.|||...+. +..|.......|+++|+++.-++.|++
T Consensus 18 a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~ 70 (174)
T d1p0fa2 18 AAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE 70 (174)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred HHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH
Confidence 3457788999999999988755443 333333333689999999999998876
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| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.25 E-value=2.8 Score=35.76 Aligned_cols=116 Identities=12% Similarity=-0.034 Sum_probs=65.1
Q ss_pred ccccchHHHHHHH-HHHhCCCCC--CEEEEEc--CCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcc
Q psy19 291 NITTLKPTIAYNM-VRLASPIPG--DVFLDPM--CGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRE 365 (494)
Q Consensus 291 ~~a~L~e~lAa~l-l~la~~~~g--~~VLDP~--CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~ 365 (494)
+..++.--.|+.. ...+..++| ++||=.+ -|.|++++..|+.+....|+++..+++........+ |. .
T Consensus 7 galg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~---ga----d 79 (187)
T d1vj1a2 7 GAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSEL---GF----D 79 (187)
T ss_dssp TTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHS---CC----S
T ss_pred HHhhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcc---cc----e
Confidence 3445654455544 456677776 7788766 467899999998764446777766655443333222 21 1
Q ss_pred cceeeeeeccccc--cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 366 LKVSPLVCNVRQL--CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 366 ~~i~~~~~Da~~l--~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
..++....|+.+. ...+..+|+|+= + .+. ..+....+.|+++ |+++.+
T Consensus 80 ~vi~~~~~~~~~~~~~~~~~GvDvv~D-~-----vGg---------~~~~~~~~~l~~~-G~iv~~ 129 (187)
T d1vj1a2 80 AAVNYKTGNVAEQLREACPGGVDVYFD-N-----VGG---------DISNTVISQMNEN-SHIILC 129 (187)
T ss_dssp EEEETTSSCHHHHHHHHCTTCEEEEEE-S-----SCH---------HHHHHHHTTEEEE-EEEEEC
T ss_pred EEeeccchhHHHHHHHHhccCceEEEe-c-----CCc---------hhHHHHhhhcccc-ccEEEe
Confidence 1122222222221 111246998874 2 221 1233588899999 998875
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